BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019988
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKSVIPVVTSPCTHVKHSPLCCTKLTPWEPSP
ASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWL
LGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKN
TTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLL
SIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWW
ILILGVQLMRVAWFAGFTSQARRQQSPASADG

High Scoring Gene Products

Symbol, full name Information P value
AT3G60590 protein from Arabidopsis thaliana 2.8e-98
AT5G63040 protein from Arabidopsis thaliana 1.3e-07
AT1G48460 protein from Arabidopsis thaliana 0.00028

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019988
        (332 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103326 - symbol:AT3G60590 species:3702 "Arabi...   976  2.8e-98   1
TAIR|locus:2166330 - symbol:AT5G63040 "AT5G63040" species...   147  1.3e-07   1
TAIR|locus:2198070 - symbol:AT1G48460 "AT1G48460" species...   117  0.00028   1


>TAIR|locus:2103326 [details] [associations]
            symbol:AT3G60590 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009706 "chloroplast
            inner membrane" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
            "plastid" evidence=IDA] EMBL:CP002686 GO:GO:0009706 IPI:IPI00528384
            RefSeq:NP_974468.1 UniGene:At.19770 PRIDE:F4JBW0
            EnsemblPlants:AT3G60590.3 GeneID:825230 KEGG:ath:AT3G60590
            OMA:WFAGFTA PhylomeDB:F4JBW0 ArrayExpress:F4JBW0 Uniprot:F4JBW0
        Length = 404

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 184/318 (57%), Positives = 237/318 (74%)

Query:    17 LWTLPRSMRLVNFKSVIPVVTSPCT-HVKHSPLCCT-KLTPWEPSPASHAPTDDADYKIL 74
             L T+   +RL N   +  + T  C    ++  + CT KL+ WEPSP  HA  ++A   +L
Sbjct:    88 LCTMTPRVRLKNPNMLQKLKTGSCNFRFRNLRVLCTPKLSQWEPSPFIHASAEEAADIVL 147

Query:    75 NKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPT 134
             +K +N+FE++ S++  E    K +    A  +   Q+Q LKWP+WLLGP +LL +GM PT
Sbjct:   148 DKTANVFESIVSESAEEE---KVD--MSAQQRTNSQVQVLKWPIWLLGPSVLLTSGMAPT 202

Query:   135 LWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYK 194
             LWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYK
Sbjct:   203 LWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYK 262

Query:   195 FWNMVANTTGFIIPLLMLFGSQKGFL---QPQLPFIPFAVLLGPYLLLLSIQILTEMLTW 251
             FWNM +   GF++P+L+LFGSQ G L   QPQ+PF+  AV+L PY +LL++Q LTE+LTW
Sbjct:   263 FWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTW 322

Query:   252 HWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRV 311
             HWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRV
Sbjct:   323 HWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRV 382

Query:   312 AWFAGFTSQARRQQSPAS 329
             AWFAGF S+    Q P S
Sbjct:   383 AWFAGFASRTTTGQQPQS 400


>TAIR|locus:2166330 [details] [associations]
            symbol:AT5G63040 "AT5G63040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] EMBL:CP002688 GO:GO:0009507 EMBL:BT024743
            IPI:IPI00521354 RefSeq:NP_568963.1 UniGene:At.29017 PRIDE:Q29Q13
            EnsemblPlants:AT5G63040.1 GeneID:836424 KEGG:ath:AT5G63040
            TAIR:At5g63040 OMA:ISIWSIS Genevestigator:Q3E868 Uniprot:Q29Q13
        Length = 366

 Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 55/224 (24%), Positives = 97/224 (43%)

Query:    65 PTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPC 124
             P DD      N+N      +S  N    P  KTE++      P  Q  + +  +WL+GP 
Sbjct:   106 PRDDDSTIQYNRNDGKPGFISFYN----PRNKTEDIIIP---PETQSPWGRL-LWLIGPA 157

Query:   125 ILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 182
             +L+ + ++P ++L   +S++F    +   L L   + +F  G   FLL+ D   +     
Sbjct:   158 VLVSSFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGKV 217

Query:   183 RACNSKPP-FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFA-VLLGPYLLLL 240
                   P     +  ++       +IP++ +     GF+ P     P A   L PYL+ +
Sbjct:   218 PQNRINPSQLGQRISSVATLVLSLMIPMVTM-----GFVWPWTG--PAASATLAPYLVGI 270

Query:   241 SIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELS 284
              +Q   E    +  SP   + P++++ YR+ QL R  +L   LS
Sbjct:   271 VVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALS 314


>TAIR|locus:2198070 [details] [associations]
            symbol:AT1G48460 "AT1G48460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] EMBL:CP002684 GO:GO:0009941
            EMBL:BT020308 EMBL:BT020516 IPI:IPI00533239 RefSeq:NP_175279.1
            UniGene:At.38414 STRING:Q5PNY9 PaxDb:Q5PNY9 PRIDE:Q5PNY9
            EnsemblPlants:AT1G48460.1 GeneID:841267 KEGG:ath:AT1G48460
            TAIR:At1g48460 eggNOG:NOG270538 InParanoid:Q5PNY9 OMA:RGSSCWP
            PhylomeDB:Q5PNY9 ProtClustDB:CLSN2682225 Genevestigator:Q5PNY9
            Uniprot:Q5PNY9
        Length = 340

 Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
 Identities = 37/166 (22%), Positives = 73/166 (43%)

Query:   118 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSC 175
             +W+L P +L+ + ++P  +L   I + F    +A +++    + +F  G  +FL + D  
Sbjct:   121 LWVLAPVVLISSLILPQFFLSGIIEATFKNDTVAEIVTSFCFETVFYAGLAIFLSVTDRV 180

Query:   176 ARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQ---KGF-LQPQLPFIPFAV 231
              R             FS K W ++    G++    +  G +     F +    P +    
Sbjct:   181 QRPYLD---------FSSKRWGLITGLRGYLTSAFLTMGLKVVVPVFAVYMTWPALGIDA 231

Query:   232 LLG--PYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMR 275
             L+   P+L+  ++Q + E       S  W + P+V+E YR+ Q+ R
Sbjct:   232 LIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQVTR 277


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       332   0.00090  116 3  11 22  0.48    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  243 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.63u 0.09s 27.72t   Elapsed:  00:00:01
  Total cpu time:  27.63u 0.09s 27.72t   Elapsed:  00:00:01
  Start:  Fri May 10 19:04:52 2013   End:  Fri May 10 19:04:53 2013

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