Query 019988
Match_columns 332
No_of_seqs 38 out of 40
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 06:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4686 Predicted sugar transp 60.3 51 0.0011 34.1 8.6 173 61-296 230-428 (459)
2 PRK07668 hypothetical protein; 36.7 1.8E+02 0.0038 28.3 7.9 48 191-243 169-216 (254)
3 PF09973 DUF2208: Predicted me 26.7 53 0.0012 31.4 2.6 108 76-197 60-170 (233)
4 PF11137 DUF2909: Protein of u 26.5 1.3E+02 0.0028 23.7 4.2 55 151-220 4-60 (63)
5 PF06570 DUF1129: Protein of u 26.3 38 0.00083 30.5 1.5 59 114-178 77-137 (206)
6 KOG3882 Tetraspanin family int 26.1 3.5E+02 0.0076 24.3 7.6 89 153-251 12-100 (237)
7 PF15348 GEMIN8: Gemini of Caj 24.6 45 0.00097 31.4 1.7 24 240-263 184-207 (209)
8 PF06643 DUF1158: Protein of u 24.2 81 0.0018 26.1 2.9 21 295-315 53-76 (82)
9 KOG2694 Putative zinc transpor 22.9 1.7E+02 0.0037 29.6 5.3 68 115-182 67-136 (361)
10 COG4858 Uncharacterized membra 19.3 3E+02 0.0065 26.6 5.9 103 114-229 92-198 (226)
No 1
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=60.32 E-value=51 Score=34.05 Aligned_cols=173 Identities=19% Similarity=0.317 Sum_probs=98.8
Q ss_pred CCCCCCccccccccccccceeeeccCCCCCCCCCCCchhhhhccCcccccccccccchhhhh-hHHhhhhccccccccc-
Q 019988 61 ASHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLG-PCILLGTGMVPTLWLP- 138 (332)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~q~~kw~lWLLG-P~vLvaS~i~P~l~Lp- 138 (332)
+.++=.||.|+.++.++.|- +-|+| +-+ ....++-|+|++- =+++-.-.++|-+-+.
T Consensus 230 l~lg~~D~rAerilh~e~g~--------~Ge~p--kLt-----------dv~~f~ppfw~~~iicv~yyva~fPFi~lg~ 288 (459)
T KOG4686|consen 230 LSLGLSDDRAERILHLEEGF--------LGEEP--KLT-----------DVNTFYPPFWVLVIICVLYYVAWFPFITLGP 288 (459)
T ss_pred HHhhhhhhHHHHHHhhhcCc--------ccCCc--ccc-----------cccccCccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34555688888888876442 33343 222 3446788999864 4455555555654443
Q ss_pred --------hhhhcCCccHHHHHHHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCCCceeeehhhhhhhhhhHhHH
Q 019988 139 --------ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLL 210 (332)
Q Consensus 139 --------issif~~~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~~~~~~~~P~~yk~w~~~~~vlG~viPlv 210 (332)
+|+.-.++. -+.+-.+. -.--.+|=++.|+- |.|.|-+.+-.+-.++-
T Consensus 289 ~fF~~rfGlS~~~a~~i-~s~vy~Is-----av~spvfg~i~Dk~----------------G~n~~wv~~a~~~tl~~-- 344 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSAGNI-LSTVYGIS-----AVLSPVFGAISDKY----------------GFNLWWVASACILTLLG-- 344 (459)
T ss_pred HHHHHhhCCChhhccch-hhhhhhhh-----hhhhhhHHHhHhhh----------------cceehhHHHHHHHHHHH--
Confidence 555544433 22211111 11225677788865 44777666533322221
Q ss_pred hhhhcccCcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeeeeee------ehhHHHHhhhhhhh-----
Q 019988 211 MLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVY------ESYRVLQLMRGLKL----- 279 (332)
Q Consensus 211 ~mfg~~~G~~wP~l~~~a~~vaL~PYLvgL~VQi~~E~lt~~~kSpvWp~VPiIy------evYRl~QL~RaaqL----- 279 (332)
+.|. .+ ..+-||..++..-..+-+++- +-||+||.+- ..|-+.|-..-+-|
T Consensus 345 -----H~~l--------~F-t~lsPy~~m~~lGLsysllAc----slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I 406 (459)
T KOG4686|consen 345 -----HSGL--------FF-TFLSPYTSMTFLGLSYSLLAC----SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI 406 (459)
T ss_pred -----hhhH--------Hh-hhccHHHHHHHHhhhHHHHHH----HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence 1222 11 577899998888888888882 3599999875 46777776554444
Q ss_pred -----hcccccchHHHHHHHHH
Q 019988 280 -----GAELSAPAWIVHTVRGL 296 (332)
Q Consensus 280 -----~ae~sal~wv~~q~lGl 296 (332)
++..+...|+..-+.+.
T Consensus 407 iag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 407 IAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred hhheeecCCCchhhHHHHHHHH
Confidence 33455566765555443
No 2
>PRK07668 hypothetical protein; Validated
Probab=36.73 E-value=1.8e+02 Score=28.29 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=25.6
Q ss_pred CceeeehhhhhhhhhhHhHHhhhhcccCcccCCCCChhHHHHHHHHHHHHHHH
Q 019988 191 FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQ 243 (332)
Q Consensus 191 ~~yk~w~~~~~vlG~viPlv~mfg~~~G~~wP~l~~~a~~vaL~PYLvgL~VQ 243 (332)
.-|++...-..++|.++=++++.+..+-.-|. ..+++..|..+++..+
T Consensus 169 ~~~~ls~~qs~il~~~~~i~~~~~~~~~~~~~-----~~l~l~~p~~i~~~f~ 216 (254)
T PRK07668 169 PMLQFTQMQSYILAGLIFLITVIINIYFLGWF-----GLLYLIIPLSIMFLFK 216 (254)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHH
Confidence 34555555566666666555554333333332 3346777777666543
No 3
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=26.75 E-value=53 Score=31.44 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=56.3
Q ss_pred cccceeeeccCCCCCCCCCCCchhhhhccCcccccccccccc--hhhhhhHHhhhhccccccccchhhhcCCccHHHHHH
Q 019988 76 KNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWP--MWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLS 153 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~q~~kw~--lWLLGP~vLvaS~i~P~l~Lpissif~~~~la~lLs 153 (332)
++..++| |+.+.+...+|||+++|=++- .|-. .=+.-|++++...++=+...|+-+..++....+.+.
T Consensus 60 ~g~~L~e----Ek~~~kl~~kD~el~~E~~~~------~k~~~~~ll~~~i~ii~~~~~~~~v~p~~~~~~~~~~~~~~~ 129 (233)
T PF09973_consen 60 KGRPLFE----EKNANKLMEKDKELQKEYKKQ------MKASMMNLLILPIYIILFFLLYPYVPPFISSILGPSSNELLA 129 (233)
T ss_pred cCCcccc----cccHHHHHHhCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcccccHHHH
Confidence 5667777 555555567888888765321 1111 234456666555553333336444666666666666
Q ss_pred HHhhhHHHHHHHHHHHH-hhhccccccCccccCCCCCCCceeeeh
Q 019988 154 LIGLDCIFNIGATLFLL-MADSCARSKNTTRACNSKPPFSYKFWN 197 (332)
Q Consensus 154 Lf~~ealFyiGatlFLl-maD~~~Rp~~~~~~~~~~~P~~yk~w~ 197 (332)
-|..-.+.|-+..++.. +.-+.-|..++. --.|.+||++.
T Consensus 130 rFl~yl~~Fe~~f~i~~~l~~~~~r~~~~~----~~i~~~y~Vte 170 (233)
T PF09973_consen 130 RFLVYLAYFEIFFAISMFLYRRIMRMSKMM----PMIPRSYKVTE 170 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc----cccccceEEEe
Confidence 55555555544444433 222222322211 12588999873
No 4
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=26.46 E-value=1.3e+02 Score=23.70 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=35.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCCCceeee--hhhhhhhhhhHhHHhhhhcccCcc
Q 019988 151 LLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFW--NMVANTTGFIIPLLMLFGSQKGFL 220 (332)
Q Consensus 151 lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~~~~~~~~P~~yk~w--~~~~~vlG~viPlv~mfg~~~G~~ 220 (332)
++.+.+.=.++++|-++|+++-|+. + +-|.. .+.=..++.++=++.++|.+-|..
T Consensus 4 ~iv~lll~ii~sL~saL~~l~kd~~-~--------------~~rm~~~L~~RV~lS~~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 4 LIVLLLLAIIASLFSALFFLVKDKG-S--------------SKRMVKALGRRVGLSALLFLLILIALYTGWI 60 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-C--------------CchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556677789999999999999953 1 11111 222244555555566667777887
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.29 E-value=38 Score=30.54 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=29.7
Q ss_pred cccchhhhhhHHhhhhccccccccchhhhcCC--ccHHHHHHHHhhhHHHHHHHHHHHHhhhccccc
Q 019988 114 LKWPMWLLGPCILLGTGMVPTLWLPISSIFLG--PNIASLLSLIGLDCIFNIGATLFLLMADSCARS 178 (332)
Q Consensus 114 ~kw~lWLLGP~vLvaS~i~P~l~Lpissif~~--~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp 178 (332)
-.|.+|+-+=..+.+ +-++.-.+...|.+ .+..++++++..=+ +|-.+|..+.+...|.
T Consensus 77 ~~~~~~ld~~L~~~~---if~~~~gi~~~f~~~~~~~~gi~tli~~~i---~~G~~~~~~~~~i~~~ 137 (206)
T PF06570_consen 77 NPWLMALDNSLLFFG---IFSLLFGIMGFFSPKNSNQYGIITLILVSI---VGGLVFYFIFKYIYPY 137 (206)
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence 336666555444332 23344444555544 33336666654332 2335566677777764
No 6
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=26.08 E-value=3.5e+02 Score=24.29 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=54.3
Q ss_pred HHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCCCceeeehhhhhhhhhhHhHHhhhhcccCcccCCCCChhHHHH
Q 019988 153 SLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVL 232 (332)
Q Consensus 153 sLf~~ealFyiGatlFLlmaD~~~Rp~~~~~~~~~~~P~~yk~w~~~~~vlG~viPlv~mfg~~~G~~wP~l~~~a~~va 232 (332)
.+|.+|.+|.+.-.+++.+.=+..-.+....... +..+-.......++|.++=++.++|-. |..+.. --+
T Consensus 12 ~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~---~~~~~~~~~ili~~G~v~~~v~flGc~-Ga~~es------~~l 81 (237)
T KOG3882|consen 12 LLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLL---ESDFLVPAYILIAVGGVVFLVGFLGCC-GALRES------RCL 81 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeEeccchhhcc---ccchhcchhhhhhhhHHHHHHHHhhhh-hhHhhh------HHH
Confidence 4788899998887777777666554444442222 111122334456677777777776321 222222 248
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019988 233 LGPYLLLLSIQILTEMLTW 251 (332)
Q Consensus 233 L~PYLvgL~VQi~~E~lt~ 251 (332)
|..|.+.+.+-++.|...-
T Consensus 82 L~~y~~~l~l~~i~e~~~~ 100 (237)
T KOG3882|consen 82 LLSYFILLLLLFIAELAAG 100 (237)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999988887764
No 7
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=24.57 E-value=45 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhcCCCceeeeee
Q 019988 240 LSIQILTEMLTWHWQSPVWLVTPV 263 (332)
Q Consensus 240 L~VQi~~E~lt~~~kSpvWp~VPi 263 (332)
-++|+-|++..+..+..-||+||.
T Consensus 184 aalql~fd~~~D~~~P~~WP~IPL 207 (209)
T PF15348_consen 184 AALQLSFDKHCDRKQPKYWPVIPL 207 (209)
T ss_pred HHHHHHHHhhhcccCCCCCCCCCC
Confidence 468999999999999999999996
No 8
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=24.22 E-value=81 Score=26.14 Aligned_cols=21 Identities=33% Similarity=0.906 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHhh
Q 019988 295 GLVCWWILILGV---QLMRVAWFA 315 (332)
Q Consensus 295 Glvc~WsL~lg~---fLMrlaW~~ 315 (332)
-+.|+|-|.||. +..|+.|--
T Consensus 53 l~FClWFLlLGaiEy~viRfiwrR 76 (82)
T PF06643_consen 53 LVFCLWFLLLGAIEYFVIRFIWRR 76 (82)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 368999999986 788998854
No 9
>KOG2694 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=22.92 E-value=1.7e+02 Score=29.60 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=51.5
Q ss_pred ccchhhhhhHHhhhhccccccccc--hhhhcCCccHHHHHHHHhhhHHHHHHHHHHHHhhhccccccCcc
Q 019988 115 KWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 182 (332)
Q Consensus 115 kw~lWLLGP~vLvaS~i~P~l~Lp--issif~~~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~ 182 (332)
.|..-|+|-++...|+++|.+.+| +--.++++-=.-.|-+...=++=-+-..+||++.-.+|-..+++
T Consensus 67 ~Wi~sLlGs~~vglsGifPl~~iP~e~~~~l~s~ag~~rL~~LLsFAiGgLLgdVFLHLLPEAwe~~n~~ 136 (361)
T KOG2694|consen 67 MWIYSLLGSSLVGLSGIFPLFLIPAEIHVLLSSSAGQRRLNLLLSFAIGGLLGDVFLHLLPEAWESNNQD 136 (361)
T ss_pred hhHHHHhhhHHHhhcccceeeeechhhhhhccCchhHHHHHHHHHHHHhhHHHHHHHHhCHHHHhccCCC
Confidence 388889999999999999999999 66667766555444444443444444689999999999877666
No 10
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=19.25 E-value=3e+02 Score=26.61 Aligned_cols=103 Identities=23% Similarity=0.386 Sum_probs=50.3
Q ss_pred cccchhhhhhHHhhhhccccccccc-hhhhcCC-ccHHHHHHHHhhhHHHHHHHHHHHHhhhccccccCccccCCCCCCC
Q 019988 114 LKWPMWLLGPCILLGTGMVPTLWLP-ISSIFLG-PNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPF 191 (332)
Q Consensus 114 ~kw~lWLLGP~vLvaS~i~P~l~Lp-issif~~-~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~~~~~~~~P~ 191 (332)
-+|.||+=+-...+..+. .+. +.++|.. -...++.+++.+-+ .|-..+..|=--.-|++. .++..|+
T Consensus 92 dp~lm~lDssLl~lg~~a----Llsgitaff~~nA~~~GlItlll~a~---vgGfamy~my~y~yr~~a----d~sqr~~ 160 (226)
T COG4858 92 DPWLMWLDSSLLFLGAMA----LLSGITAFFQKNAQVYGLITLLLTAV---VGGFAMYIMYYYAYRMRA----DNSQRPG 160 (226)
T ss_pred CceEEEecccHHHHHHHH----HHHHHHHHHhcCCcchhHHHHHHHHH---hhhHHHHHHHHHHHHhhc----ccccCCc
Confidence 457777644333222221 122 6666654 44556666655432 333444445444555544 2445566
Q ss_pred ceeeehhhhhhhhhhHhHHhhh--hcccCcccCCCCChhH
Q 019988 192 SYKFWNMVANTTGFIIPLLMLF--GSQKGFLQPQLPFIPF 229 (332)
Q Consensus 192 ~yk~w~~~~~vlG~viPlv~mf--g~~~G~~wP~l~~~a~ 229 (332)
+.|+-.+ .+++..+=+++|+ +..--.+=|++++++.
T Consensus 161 ~~K~~lv--~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l 198 (226)
T COG4858 161 TWKYLLV--AVLSMLLWIAVMIATVFLPTSLNPQLPPIAL 198 (226)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHhhCCCcCCcCCchHHH
Confidence 6664333 3333333333333 3333456788888885
Done!