Query 019988
Match_columns 332
No_of_seqs 38 out of 40
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 10:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019988.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019988hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gmua2 d.58.38.1 (A:71-138) U 6.7 86 0.0063 21.9 1.4 11 306-316 13-23 (68)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 5.6 3.4E+02 0.025 21.0 4.7 40 139-178 276-315 (447)
3 d1dlca3 f.1.3.1 (A:61-289) del 4.1 1E+02 0.0076 25.0 0.4 10 214-223 33-42 (229)
4 d1oeda_ f.36.1.1 (A:) Acetylch 4.0 2.7E+02 0.02 21.4 2.9 28 120-150 8-35 (227)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 3.4 4.4E+02 0.032 16.1 2.9 16 295-310 17-32 (33)
6 d1mjsa_ b.26.1.1 (A:) Smad3 MH 3.2 1.5E+02 0.011 24.3 0.5 19 254-282 163-181 (190)
7 d1oedc_ f.36.1.1 (C:) Acetylch 3.2 3.5E+02 0.026 20.7 3.0 22 120-141 8-29 (260)
8 d1xqma_ d.22.1.1 (A:) GFP-like 3.0 1.3E+02 0.0098 25.5 0.1 24 33-60 119-142 (230)
9 d2rh7a1 d.22.1.1 (A:7-226) Gre 2.9 1E+02 0.0076 26.0 -0.8 23 33-59 118-140 (220)
10 d1eara2 d.58.38.1 (A:75-142) U 2.9 2.5E+02 0.018 19.2 1.4 12 306-317 13-24 (68)
No 1
>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE, C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=6.65 E-value=86 Score=21.87 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=9.2
Q ss_pred HHHHHHHHhhh
Q 019988 306 VQLMRVAWFAG 316 (332)
Q Consensus 306 ~fLMrlaW~~g 316 (332)
..|+|+||+-|
T Consensus 13 ~~L~r~A~HLG 23 (68)
T d1gmua2 13 FMLAKACYALG 23 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 35899999987
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.59 E-value=3.4e+02 Score=21.02 Aligned_cols=40 Identities=15% Similarity=-0.049 Sum_probs=20.8
Q ss_pred hhhhcCCccHHHHHHHHhhhHHHHHHHHHHHHhhhccccc
Q 019988 139 ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARS 178 (332)
Q Consensus 139 issif~~~~la~lLsLf~~ealFyiGatlFLlmaD~~~Rp 178 (332)
+...++-+....-...........+|..+.-.+.||..|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc
Confidence 3444443433333333444444555666666778887663
No 3
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=4.12 E-value=1e+02 Score=24.96 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=5.3
Q ss_pred hcccCcccCC
Q 019988 214 GSQKGFLQPQ 223 (332)
Q Consensus 214 g~~~G~~wP~ 223 (332)
+...|.+||-
T Consensus 33 ~~i~~~lwP~ 42 (229)
T d1dlca3 33 TNFLNTIWPS 42 (229)
T ss_dssp HHHHHHTSSS
T ss_pred HHHHHHhCCC
Confidence 3345666663
No 4
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.96 E-value=2.7e+02 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=22.3
Q ss_pred hhhhHHhhhhccccccccchhhhcCCccHHH
Q 019988 120 LLGPCILLGTGMVPTLWLPISSIFLGPNIAS 150 (332)
Q Consensus 120 LLGP~vLvaS~i~P~l~Lpissif~~~~la~ 150 (332)
++.|++++....+=.||+|-++ ++-++-
T Consensus 8 li~P~~li~~ls~~~F~lp~~s---~eRi~l 35 (227)
T d1oeda_ 8 VIIPCLLFSFLTGLVFYLPTDS---GEKMTL 35 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---GGGHHH
T ss_pred HHHHHHHHHHHHHHHheecCCC---CccEEe
Confidence 6789999999999999999876 454433
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=3.40 E-value=4.4e+02 Score=16.06 Aligned_cols=16 Identities=19% Similarity=0.627 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 019988 295 GLVCWWILILGVQLMR 310 (332)
Q Consensus 295 Glvc~WsL~lg~fLMr 310 (332)
-+...|.=+++.|+.|
T Consensus 17 ~ilvfw~gv~avf~ar 32 (33)
T d1xmec1 17 TILVFWLGVYAVFFAR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3445676667777765
No 6
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.25 E-value=1.5e+02 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCCceeeeeeeeehhHHHHhhhhhhhhcc
Q 019988 254 QSPVWLVTPVVYESYRVLQLMRGLKLGAE 282 (332)
Q Consensus 254 kSpvWp~VPiIyevYRl~QL~RaaqL~ae 282 (332)
.-|||.-| .|++++|+.++
T Consensus 163 stPCWiEi----------~l~~pl~~ld~ 181 (190)
T d1mjsa_ 163 STPCWIEL----------HLNGPLQWLDK 181 (190)
T ss_dssp TSSSEEEE----------EEHHHHHHHHH
T ss_pred cCCEEEEE----------ecCChhHHHHH
Confidence 47999887 78899988876
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.23 E-value=3.5e+02 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.2
Q ss_pred hhhhHHhhhhccccccccchhh
Q 019988 120 LLGPCILLGTGMVPTLWLPISS 141 (332)
Q Consensus 120 LLGP~vLvaS~i~P~l~Lpiss 141 (332)
++.|+++++...+=.||+|-++
T Consensus 8 ~~~P~~~~~~l~~~~f~lp~~~ 29 (260)
T d1oedc_ 8 FITPCVLISFLASLAFYLPAES 29 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHeeeCCCC
Confidence 6789999999999999999775
No 8
>d1xqma_ d.22.1.1 (A:) GFP-like non-fluorescent chromoprotein FP595 {Anemonia sulcata [TaxId: 6108]}
Probab=3.01 E-value=1.3e+02 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.0
Q ss_pred cccccCCcccccCcceecccCCCCCCCC
Q 019988 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP 60 (332)
Q Consensus 33 ~~~~~~p~~~~~~~~~~~~~~~~we~s~ 60 (332)
-+|..|| .+.++.--|+.-||||-
T Consensus 119 ~~G~nFP----~dGPVMqkkt~~wePs~ 142 (230)
T d1xqma_ 119 ILGNNFP----ADGPVMQNKVGRWEPGT 142 (230)
T ss_dssp EEEECCC----TTSTTTTTCCCEECCEE
T ss_pred EEEECCC----CCCCcccccccCcCCeE
Confidence 4577888 57888889999999993
No 9
>d2rh7a1 d.22.1.1 (A:7-226) Green fluorescent protein, GFP {Renilla reniformis [TaxId: 6136]}
Probab=2.89 E-value=1e+02 Score=26.02 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.0
Q ss_pred cccccCCcccccCcceecccCCCCCCC
Q 019988 33 IPVVTSPCTHVKHSPLCCTKLTPWEPS 59 (332)
Q Consensus 33 ~~~~~~p~~~~~~~~~~~~~~~~we~s 59 (332)
-++.+|| .+.+++--|.+-||||
T Consensus 118 f~G~nFP----~dGPVMqkkt~~weps 140 (220)
T d2rh7a1 118 FKAKDLR----RMGPVMQQDIVGMQPS 140 (220)
T ss_dssp EEEECCC----TTSTTTTTCEEEECCE
T ss_pred EEEECCC----CCCCcccccccccCCc
Confidence 4567788 5788888899999999
No 10
>d1eara2 d.58.38.1 (A:75-142) Urease metallochaperone UreE, C-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=2.85 E-value=2.5e+02 Score=19.20 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhc
Q 019988 306 VQLMRVAWFAGF 317 (332)
Q Consensus 306 ~fLMrlaW~~g~ 317 (332)
..|+|+||+-|=
T Consensus 13 ~el~~~a~hlGN 24 (68)
T d1eara2 13 QEMGKMAFEIGN 24 (68)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 357899999873
Done!