Query 019989
Match_columns 332
No_of_seqs 124 out of 135
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu1_A DSRBP-ZFA, RNA binding 96.5 0.0016 5.4E-08 54.3 3.5 37 32-68 90-126 (127)
2 1zu1_A DSRBP-ZFA, RNA binding 94.8 0.015 5.2E-07 48.3 3.0 35 35-69 32-66 (127)
3 1zr9_A Zinc finger protein 593 94.8 0.013 4.5E-07 49.5 2.5 39 31-69 46-84 (124)
4 3eph_A TRNA isopentenyltransfe 93.8 0.031 1.1E-06 55.5 3.2 36 34-69 359-400 (409)
5 2yrk_A Zinc finger homeobox pr 84.0 0.66 2.3E-05 34.2 2.7 35 35-69 13-47 (55)
6 3cw1_L U1 small nuclear ribonu 80.7 0.91 3.1E-05 35.5 2.5 32 36-67 4-37 (77)
7 4dgw_A PRE-mRNA-splicing facto 75.6 0.99 3.4E-05 44.7 1.7 39 31-69 288-326 (402)
8 2xus_A Breast cancer metastasi 29.0 1.3E+02 0.0043 21.5 5.4 29 261-290 18-46 (49)
9 2cs3_A Protein C14ORF4, MY039 21.3 39 0.0013 26.9 1.7 19 28-46 8-26 (93)
10 1dl6_A Transcription factor II 20.2 28 0.00097 25.1 0.6 15 32-46 27-41 (58)
11 3gs2_B Chromobox protein homol 20.2 35 0.0012 22.1 1.0 9 205-213 20-28 (30)
No 1
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.49 E-value=0.0016 Score=54.32 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 019989 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (332)
Q Consensus 32 ~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k 68 (332)
..+.+.|.+|++.+.++..+..|+.||.|+.++.++.
T Consensus 90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~ 126 (127)
T 1zu1_A 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126 (127)
T ss_dssp CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence 5678899999999999999999999999999998763
No 2
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=94.83 E-value=0.015 Score=48.33 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.4
Q ss_pred CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 35 ~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~ 69 (332)
.+.|.+|++.+.+++.-.+|..|+.|+.+|..+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999987764
No 3
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=94.77 E-value=0.013 Score=49.51 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 31 ~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~ 69 (332)
+..|+..|..|+....+++.+..|.+||.|+.++..++.
T Consensus 46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 456899999999999999999999999999999999974
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.81 E-value=0.031 Score=55.45 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=31.3
Q ss_pred CCceeecccc------cccCcchhHHhhCChHHHHHHHHHhh
Q 019989 34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 34 G~L~C~lC~~------~vk~EslW~aH~~sk~Hr~~~~~~k~ 69 (332)
-+-+|-+|+. ++-.|--|..|+.|+.||.++.+.+.
T Consensus 359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k 400 (409)
T 3eph_A 359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTR 400 (409)
T ss_dssp CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHH
Confidence 3458999997 78888999999999999999988764
No 5
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=84.02 E-value=0.66 Score=34.19 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=29.6
Q ss_pred CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 35 ~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~ 69 (332)
.+.|++|++.--+-.--..||.|++|-.+|..+-+
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~ 47 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG 47 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred CccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence 48999999987777778899999999999987543
No 6
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=80.67 E-value=0.91 Score=35.47 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=26.9
Q ss_pred ceeecccccccCc--chhHHhhCChHHHHHHHHH
Q 019989 36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI 67 (332)
Q Consensus 36 L~C~lC~~~vk~E--slW~aH~~sk~Hr~~~~~~ 67 (332)
--|--|+.-|.+. +.|..|+.|++|+.|+...
T Consensus 4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y 37 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37 (77)
T ss_pred cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence 4699999999555 4589999999999999873
No 7
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=75.60 E-value=0.99 Score=44.73 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 31 ~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~ 69 (332)
+..+.+-|..|....+++++-.+|+.||+|..++++.+.
T Consensus 288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~ 326 (402)
T 4dgw_A 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN 326 (402)
T ss_dssp ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence 456789999999999999999999999999998876543
No 8
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=29.01 E-value=1.3e+02 Score=21.53 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=22.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019989 261 EMIEEYESVDQKTYREKVEALRKKKKEWEA 290 (332)
Q Consensus 261 ~ere~~eidEQi~~~~RV~~Lk~kk~~~~~ 290 (332)
.+++-.++-||+ |..|+..|+.++++++.
T Consensus 18 LEkqF~~LkEql-Y~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 18 LEKQFSELKEKL-FRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 334445578886 88999999999999865
No 9
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=21.26 E-value=39 Score=26.91 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=14.7
Q ss_pred cccCCCCCceeeccccccc
Q 019989 28 VRYNEFDQPVCRVCDVVLK 46 (332)
Q Consensus 28 A~Y~~~G~L~C~lC~~~vk 46 (332)
..-+....|.|+||+..+-
T Consensus 8 ~~~~~~a~l~CtlC~erLE 26 (93)
T 2cs3_A 8 SPMANSGPLCCTICHERLE 26 (93)
T ss_dssp CSSCSCCSCCCSSSCSCCS
T ss_pred CCCCCCCeeEeecchhhhc
Confidence 3445778999999997764
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.18 E-value=28 Score=25.06 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=13.3
Q ss_pred CCCCceeeccccccc
Q 019989 32 EFDQPVCRVCDVVLK 46 (332)
Q Consensus 32 ~~G~L~C~lC~~~vk 46 (332)
..|.++|..|+.+|-
T Consensus 27 ~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 27 RAGDMICPECGLVVG 41 (58)
T ss_dssp SSCCEECTTTCCEEC
T ss_pred CCCeEEeCCCCCEEe
Confidence 679999999998875
No 11
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=20.17 E-value=35 Score=22.07 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 019989 205 ALPEGFFDN 213 (332)
Q Consensus 205 ~LPeGFFDD 213 (332)
..|.|||-+
T Consensus 20 ~~p~gff~~ 28 (30)
T 3gs2_B 20 QAAEGFFRD 28 (30)
T ss_dssp SCSTTTSCC
T ss_pred CCCcccccc
Confidence 489999975
Done!