BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019990
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/311 (58%), Positives = 224/311 (72%), Gaps = 1/311 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL 303
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 304 PINDFSREKMD 314
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/311 (58%), Positives = 224/311 (72%), Gaps = 1/311 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 62
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 63 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 182
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARK
Sbjct: 183 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 242
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL
Sbjct: 243 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL 302
Query: 304 KVDEFSRAKMD 314
+++FSR KMD
Sbjct: 303 PINDFSREKMD 313
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/312 (51%), Positives = 208/312 (66%), Gaps = 5/312 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LKVDEFSRAKMD 314
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 318 bits (814), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/312 (51%), Positives = 208/312 (66%), Gaps = 5/312 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LKVDEFSRAKMD 314
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 317 bits (811), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 161/312 (51%), Positives = 207/312 (66%), Gaps = 5/312 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L E + +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LKVDEFSRAKMD 314
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 316 bits (810), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/316 (50%), Positives = 209/316 (66%), Gaps = 7/316 (2%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+I E A +AL GV ME+
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59 IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
D AFPLL G+ A D + A KD ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 KHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRA+ QI+ + VS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238
++ + +WGNHS T Y D +A + + V++ + DD W F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWS 298
R DHI DWVLGT G W +MG+ SDGSYGIPEG+I+ FPVT E GE+
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query: 299 IVKGLKVDEFSRAKMD 314
IV+GL +D FS+ +++
Sbjct: 296 IVQGLSIDAFSQERIN 311
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/312 (51%), Positives = 207/312 (66%), Gaps = 5/312 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
+WGNHSS +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LKVDEFSRAKMD 314
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 209/314 (66%), Gaps = 5/314 (1%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
MAK RV VTGAAGQI Y+L+ IA G +LG DQPVIL +LD+ A A+ GV MEL D
Sbjct: 5 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDD 64
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
AFPLL GVV T D A KD ++A++VG PR +GMERKD++S N I+ Q +AL +
Sbjct: 65 CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEV 124
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
A+ + KVLVV NPANTNA I + AP +P KN T + RLDHNRA+ Q++ + V+ ++
Sbjct: 125 ASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIE 184
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
+ +WGNHS T YPD A T++GE ++ + DD W FI TV +RGAAII+AR
Sbjct: 185 KLAVWGNHSPTMYPDFRFA---TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARG 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
DH+RDWVLGT G WV+MG+ SDGSYGIPE +IY PV CE GE+ V
Sbjct: 241 LSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRV 299
Query: 301 KGLKVDEFSRAKMD 314
+GL++D FSR KMD
Sbjct: 300 EGLEIDAFSREKMD 313
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/299 (53%), Positives = 203/299 (67%), Gaps = 7/299 (2%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V VTGAAGQIGYALVP+IARG +LGP PV L +LDIEPA +AL GV+ EL D AFPL
Sbjct: 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL 84
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
L VV T D A V IA+M G FPRK GMERKD++ N I+K Q A+ AA +C
Sbjct: 85 LDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDC 144
Query: 126 KVLVVANPANTNALI-LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
+V+VV NPANTNALI LK + +++T +TRLDHNRA+ ++ + V VS V+NVII
Sbjct: 145 RVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVII 204
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
WGNHSSTQ PD + A + T+ P REA+ DD L+ +F+ V+ RGA II+ R
Sbjct: 205 WGNHSSTQVPDTDSAVIGTT----PAREAIKDDA-LDDDFVQVVRGRGAEIIQLRGLSSA 259
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSD-GSYGIPEGLIYSFPVTCEKGEWSIVKG 302
DH+ DW+ GTP+G +VSMGVYSD YG+P GLI+SFP TC GEW++V G
Sbjct: 260 MSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSG 318
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 175/313 (55%), Gaps = 6/313 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K + V V+GAAG I L+ +A G + GPDQP+ L +L E + AL GV MEL D+
Sbjct: 40 KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSL 99
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
+PLL+ V D E +D A+++G PR GMER D++ N I+ Q AL A+
Sbjct: 100 YPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVAS 159
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
PN KV+VV NP NTNALI + AP+IP KN LTRLD NRA Q++ + V V NV
Sbjct: 160 PNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 219
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
IWGNHS+TQ PD +A + PV E + D WL EF VQ RG +IK
Sbjct: 220 TIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRS 275
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIV 300
D IR V TP+G W S GVY++G+ YGI E +++S P + G++ V
Sbjct: 276 SAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFV 335
Query: 301 KGLKVDEFSRAKM 313
K + D++ K+
Sbjct: 336 KDVIFDDYLSKKI 348
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 175/308 (56%), Gaps = 6/308 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K + + V+GAAG I L+ +A G + G DQP+ L +L E + +AL GV MEL D+
Sbjct: 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL 89
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
+PLL+ V D E +DV+ A+++G PR GMER ++ N I+ Q AL A+
Sbjct: 90 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ + V V NV
Sbjct: 150 KNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 209
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 242
IWGNHS+TQ PD +A + +PV+E + WL EF TVQ+RG A+I+
Sbjct: 210 TIWGNHSTTQVPDFLNAKIDG----RPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRS 265
Query: 243 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIV 300
D I+ V TP+G W S GVY+ G+ YGI E +++S P + G++ +
Sbjct: 266 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELA 325
Query: 301 KGLKVDEF 308
+ D+F
Sbjct: 326 TDVSNDDF 333
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 24/273 (8%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ + GAAG IG + A + L P+ L + D P A L GV E+ F L
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAM-MRLTPN----LCLYD--PFAVGLEGVAEEIRHCGFEGL 62
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
+ T+D+ EA D V GG PRKEGM R+D++ N I AQ K P+CK
Sbjct: 63 N-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEI-AAQLGKDIKSYCPDCK 120
Query: 127 -VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIW 185
V+++ NPA+ L+ ++ P++ +T L LD R ++++ + S V N +
Sbjct: 121 HVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTY 179
Query: 186 GNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARKX 241
G H + A V + P+ + + D N ++ ++QR GA IIK R
Sbjct: 180 GGHGEQMAVFASTAKVNGT----PLTDLIGTDKLTNEQW-AELKQRVVKGGANIIKLRGR 234
Query: 242 XXXXXXXXXXCDHIRDWVLGT----PKGTWVSM 270
+ IR + G P G +V++
Sbjct: 235 SSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNV 267
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 78 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 72 AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAM 130
Query: 138 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
L++F+ +PA + + LD R +SE V V DV V + G H + P
Sbjct: 131 VWALQKFS-GLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDV-TVFVLGGHGDSMVPLA 188
Query: 197 NHATV 201
++TV
Sbjct: 189 RYSTV 193
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 13/235 (5%)
Query: 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 139
+D ++ ++ G PR GM R D+++KN I +P+ ++VVANP +
Sbjct: 68 EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVANPLDVMTY 126
Query: 140 ILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
+ E A P + + LD R I+E L V V DV+ ++ G H T P +
Sbjct: 127 VAYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQ-ALLMGGHGDTMVPLPRY 184
Query: 199 ATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDW 258
TV G PV + + D+ E + + G I+ + + +
Sbjct: 185 TTV----GGIPVPQLI--DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAE-MTEA 237
Query: 259 VLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 313
+L K + Y DG YG+ + L PV G V + +D +A++
Sbjct: 238 ILKDNK-RILPCAAYCDGEYGLDD-LFIGVPVKLGAGGVEEVIEVDLDADEKAQL 290
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 37/248 (14%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAF 63
++V + GA+G++G A ++A+ +P + L ++ E + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLAK-------EPFMKDLVLIGREHSINKLEGLREDIYDA-- 51
Query: 64 PLLKGVVATTDV-VEACKDVNI------AVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
L G + ++ VE+ +++ I ++ G PRKEGM R D+ N I A
Sbjct: 52 --LAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYA-- 107
Query: 117 LEKHAAPNC--KVLVVANPANT---NALILKEFAPSIPAKNITCLTRLDHNRAMGQISER 171
K A C K+ V+ NP + AL+ +F + + T LD R I++
Sbjct: 108 --KKIAEICDTKIFVITNPVDVMTYKALVDSKFERN---QVFGLGTHLDSLRFKVAIAKF 162
Query: 172 LKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR 231
VH+ +V+ II G H + P ++ TS G P+++ E I V+ +
Sbjct: 163 FGVHIDEVRTRII-GEHGDSMVPLLS----ATSIGGIPIQKFERFKELPIDEIIEDVKTK 217
Query: 232 GAAIIKAR 239
G II+ +
Sbjct: 218 GEQIIRLK 225
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 18/205 (8%)
Query: 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELI 59
A+N +V V GA+G IG L +L + P++ L + DI +
Sbjct: 25 AQNNAKVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 77
Query: 60 DAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 119
AA +KG + + + K ++ V+ G PRK GM R D+ + N +I +A +
Sbjct: 78 KAA---VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQ 134
Query: 120 HAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVH 175
H P + V+ANP N+ A + K+ P K I +T LD RA ++E +
Sbjct: 135 H-CPEAMICVIANPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANTFVAELKGLD 192
Query: 176 VSDVKNVIIWGNHSSTQYPDVNHAT 200
+ V +I G+ T P ++ T
Sbjct: 193 PARVNVPVIGGHAGKTIIPLISQCT 217
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140
D +I ++ G PRK GM R+D++ KN I K + KH+ N ++VV+NP + I
Sbjct: 69 DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----I 123
Query: 141 LKEFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+ A +P + + + LD R I+ L V + D+ N + G H P V
Sbjct: 124 MTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVV 182
Query: 197 NHATV 201
+ TV
Sbjct: 183 KYTTV 187
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 3/207 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
++ ++ G PRK G R D++ N+ + + + KH PN V+ + NP + L+
Sbjct: 75 DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGI-KHNCPNAFVICITNPLDIXVNXLQ 133
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVT 202
+F+ K + LD R +++ L V V V+ + G H T P + V
Sbjct: 134 KFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHGDTXVPLTKXSNVA 192
Query: 203 TSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGT 262
E+ V+E L+ ++ + G I+ K + L
Sbjct: 193 GVSLEQLVKEGKLKQERLDA-IVSRTRSGGGEIVALLKTGSAYYAPAAAGIQXAESFLKD 251
Query: 263 PKGTWVSMGVYSDGSYGIPEGLIYSFP 289
K G YG+ E L P
Sbjct: 252 KKXILPCAAKVKAGXYGLDEDLFVGVP 278
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
+I V+ G PRK GM R+D++S N I + + +H + N ++VV+NP + I+
Sbjct: 71 DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEH-SKNPIIVVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
A +P + + + LD R I+ L V + DV ++ G H P V +
Sbjct: 126 HVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL-GGHGDAMVPVVKY 184
Query: 199 ATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXX-XXXXCDHIRD 257
TV PV + ++ + E + + GA I+ K + +
Sbjct: 185 TTVAGI----PVADLISAERI--AELVERTRTGGAEIVNHLKQGSAFYSPATSVVEMVES 238
Query: 258 WVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDE 307
VL + ++ V DG YGI +G PV K + +K+D+
Sbjct: 239 IVLDRKR--VLTCAVSLDGQYGI-DGTFVGVPVKLGKNGVEHIYEIKLDQ 285
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
+I ++ G PRK GM R+D++ KN I K + KH+ N ++VV+NP + I+
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
A +P + + + LD R I+ L V + D+ N + G H P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 199 ATV 201
TV
Sbjct: 185 TTV 187
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 13 AAGQIGYALVPMIARGIMLGPDQPVILHMLDI---EPAAEALN-GVKMELIDAAFPLLKG 68
AGQIG + ++LG ++M DI P +AL+ M LI + +
Sbjct: 21 GAGQIGSTI------ALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG- 73
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+
Sbjct: 74 ----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGN 187
+ NP + KE IPA + ++ LD R +S L V SDV + I+ G
Sbjct: 129 CITNPLDAMVYYFKE-KSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDV-SAIVVGG 186
Query: 188 HSSTQYPDVNHATV 201
H P + T+
Sbjct: 187 HGDEMIPLTSSVTI 200
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P+
Sbjct: 53 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDA 111
Query: 126 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181
+ +++NP N+ A + K+ P K I +T LD RA ++E + + V
Sbjct: 112 MICIISNPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANAFVAELKGLDPARVSV 170
Query: 182 VIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR 239
+I G+ T P ++ T K + P + L+T +Q+ G ++KA+
Sbjct: 171 PVIGGHAGKTIIPLISQC---TPKVDFP-------QDQLST-LTGRIQEAGTEVVKAK 217
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 17/238 (7%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138
CKD ++ V+ G P+K G R D+++KN++I + + LV ANP +
Sbjct: 70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGI-FLVAANPVDILT 128
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
+F+ + I T LD +R + ++ V V + I G H +++ +
Sbjct: 129 YATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYST 187
Query: 199 ATVTTSKGEKPVR-----EAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCD 253
AT+ G +PVR + V+DD+ E V+ + II +
Sbjct: 188 ATI----GTRPVRDVAKEQGVSDDDLAKLE--DGVRNKAYDIINLKGATFYGIGTALM-- 239
Query: 254 HIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG-LKVDEFSR 310
I +L + + +G Y DG YG+ + I + + G I++ L DE +
Sbjct: 240 RISKAIL-RDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKK 296
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
++ T+D + D ++ V+ G RK GM R D+++ N I K+ + KH +PN ++
Sbjct: 67 IIGTSDYADTA-DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIV 124
Query: 129 VVANPANTNAL-ILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWG 186
V+ NP + + KE P + + + LD R I++ L + V D+ ++ G
Sbjct: 125 VLTNPVDAMTYSVFKE--AGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL-G 181
Query: 187 NHSSTQYPDVNHA 199
H P V ++
Sbjct: 182 GHGDDMVPLVRYS 194
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 39 LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGME 98
L M+D+ + L G M+L + L +V D + + V+ G ++EG
Sbjct: 48 LAMVDV--MEDKLKGEVMDLQHGSLFLKTKIVGDKDY-SVTANSKVVVVTAGARQQEGES 104
Query: 99 RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 158
R +++ +NV+I+K + K+ +PNC ++VV+NP + + + + + I T
Sbjct: 105 RLNLVQRNVNIFKFIIPNIVKY-SPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTN 163
Query: 159 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP---DVNHATVTTSKGEKPVREAVA 215
LD R I E+L +H S I+ G H + P VN A V+ +G P
Sbjct: 164 LDSARFRHLIGEKLHLHPSSCHAWIV-GEHGDSSVPVWSGVNVAGVSL-QGLNPQMGTEG 221
Query: 216 D-DNW 219
D +NW
Sbjct: 222 DGENW 226
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 199
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 259
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 260 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 314
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 199
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 259
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 260 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 314
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 199
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 259
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 260 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 314
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 11/194 (5%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M K+ +V + GA A M R ++ V++ + + EA++ I+
Sbjct: 3 MVKSRSKVAIIGAGFVGASAAFTMALRQT---ANELVLIDVFKEKAIGEAMD------IN 53
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
P + + KD ++ V+ G RK G R D+ KNV I K + K+
Sbjct: 54 HGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY 113
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
+LVV+NP + ++++++ K I T LD R +SE+L V V +V
Sbjct: 114 YNHGV-ILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172
Query: 181 NVIIWGNHSSTQYP 194
II G H +Q P
Sbjct: 173 GYII-GEHGDSQLP 185
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 17/197 (8%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
N +V V GAAG IG AL ++ + G D L + DI P GV +L +
Sbjct: 2 NAXKVAVIGAAGGIGQALALLLKNRLPAGSD----LALYDIAPVTP---GVAADL--SHI 52
Query: 64 PL---LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
P +KG A D A + ++ ++ G RK G +R D+ + N I K+ A +
Sbjct: 53 PTHVSIKG-YAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERI-AV 110
Query: 121 AAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKVHVS 177
PN + ++ NP NT I E A + + +T LD R+ ++E
Sbjct: 111 VCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPG 170
Query: 178 DVKNVIIWGNHSSTQYP 194
+V+ +I G+ T P
Sbjct: 171 EVRVPVIGGHSGVTILP 187
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 103
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLV 110
Query: 104 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163
+NV+I+K + K+ +PNC +LVV+NP + + + + + I T LD R
Sbjct: 111 QRNVNIFKFIIPNIIKY-SPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSAR 169
Query: 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
+ E+L +H S+ +I G H + P
Sbjct: 170 FRHLMGEKLGIHPSNCHGWVI-GEHGDSSVP 199
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 18/310 (5%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 23 KITVVGV-GQVGMACAISI-----LGKSLTDELALVDV--LEDKLKGEMMDLQHGSLFLQ 74
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
+ + I V+ G ++EG R +++ +NV+++K + K+ +PNC
Sbjct: 75 TPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPNCI 133
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII-- 184
++VV+NP + + + + + I LD R + E+L VH S I+
Sbjct: 134 IIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGE 193
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
G+ S + VN A V + + +NW E V + +IK K
Sbjct: 194 HGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTN 250
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KG 302
D I + + VS V G YGI + S P V +G S++ +
Sbjct: 251 WAIGLSVADLIESMLKNLSRIHPVSTMV--QGMYGIENEVFLSLPCVLNARGLTSVINQK 308
Query: 303 LKVDEFSRAK 312
LK DE ++ K
Sbjct: 309 LKDDEVAQLK 318
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 199
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 259
++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 CISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 260 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 314
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 103
++ + L G M+L + L + + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLV 110
Query: 104 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163
+NV+I+K + K++ PNCK+LVV+NP + + + + + I LD R
Sbjct: 111 QRNVNIFKFIIPNIVKYS-PNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSAR 169
Query: 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
+ ERL VH I+ G H + P
Sbjct: 170 FRYLMGERLGVHPLSCHGWIL-GEHGDSSVP 199
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 11/192 (5%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GAAG IG AL ++ + G + L + DI P + V + I A +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
KG + D A + ++ ++ G RK GM+R D+ + N I K + K C
Sbjct: 56 -KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 126 KVLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ ++ NP NT I E + KN + +T LD R+ ++E +V+
Sbjct: 114 -IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVP 172
Query: 183 IIWGNHSSTQYP 194
+I G+ T P
Sbjct: 173 VIGGHSGVTILP 184
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 10/239 (4%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
E CKD +I + G +K G R +++ KN+ I+K S + + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMA-SGFDGIFLVATNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+F+ + I T LD R +SE +V II G H T+ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHII-GEHGDTELPVW 186
Query: 197 NHATVTTSKGEKPVREAVADDNWLNTEFITTV--QQRGAAIIKARKXXXXXXXXXXXCDH 254
+HA V G PV E V ++ E + + + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 255 IRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 313
I +L + + +++ Y DG YG + I P +G + + L ++E + +
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 11/192 (5%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GAAG IG AL ++ + G + L + DI P + V + I A +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
KG + D A + ++ ++ G RK GM+R D+ + N I K + K C
Sbjct: 56 -KGF-SGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 126 KVLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ ++ NP NT I E + KN + +T LD R+ ++E +V+
Sbjct: 114 -IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVP 172
Query: 183 IIWGNHSSTQYP 194
+I G+ T P
Sbjct: 173 VIGGHSGVTILP 184
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 103
++ + L G M+L + L + + + + ++ G ++EG R +++
Sbjct: 50 VDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLV 109
Query: 104 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163
+NV+I+K + K++ P+CK+LVV+NP + + + + + I LD R
Sbjct: 110 QRNVNIFKFIIPNVVKYS-PHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSAR 168
Query: 164 AMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
+ ERL VH I+ G H + P
Sbjct: 169 FRYLMGERLGVHALSCHGWIL-GEHGDSSVP 198
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 168
I+K + K++ PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKYS-PNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SERLKVHVSDVKNVIIWGNHSSTQYP 194
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 168
I+K + K++ PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKYS-PNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SERLKVHVSDVKNVIIWGNHSSTQYP 194
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 18/310 (5%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 22 KITVVGV-GQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
+ + I V+ G ++EG R +++ +NV+++K + K+ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII-- 184
++VV+NP + + + + + I LD R ++E+L +H S I+
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
G+ S + VN A V+ + + +NW E V + +IK K
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTN 249
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KG 302
D I + + VS V G YGI + S P + +G S++ +
Sbjct: 250 WAIGLSVADLIESMLKNLSRIHPVSTMV--KGMYGIENEVFLSLPCILNARGLTSVINQK 307
Query: 303 LKVDEFSRAK 312
LK DE ++ K
Sbjct: 308 LKDDEVAQLK 317
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 10/239 (4%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
E CKD +I + G +K G R +++ KN+ I+K S + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI-FLVATNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+F+ + I T LD R +SE +V II G H T+ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVW 186
Query: 197 NHATVTTSKGEKPVREAVADDNWLNTEFITTV--QQRGAAIIKARKXXXXXXXXXXXCDH 254
+HA V G PV E V ++ E + + + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 255 IRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 313
I +L + + +++ Y DG YG + I P +G + + L ++E + +
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 18/310 (5%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 22 KITVVGV-GQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 67 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 126
+ + I V+ G ++EG R +++ +NV+++K + K+ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII-- 184
++VV+NP + + + + + I LD R ++E+L +H S I+
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 244
G+ S + VN A V+ + + +NW E V + +IK K
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTN 249
Query: 245 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KG 302
D I + + VS V G YGI + S P + +G S++ +
Sbjct: 250 WAIGLSVADLIESMLKNLSRIHPVSTMV--KGMYGIENEVFLSLPCILNARGLTSVINQK 307
Query: 303 LKVDEFSRAK 312
LK DE ++ K
Sbjct: 308 LKDDEVAQLK 317
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138
KD ++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVDILT 132
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
+ + + + T LD R I+E + V V + I G H T++P +H
Sbjct: 133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSH 191
Query: 199 ATV 201
A +
Sbjct: 192 ANI 194
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GAAG IG AL ++ + G + L + DI P + V + I A +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
KG + D A + ++ ++ G RK GM+R D+ + N I K + K C
Sbjct: 56 -KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 126 KVLVVANPANTNALILKE 143
+ ++ NP NT I E
Sbjct: 114 -IGIITNPVNTTVAIAAE 130
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138
KD ++ V+ G P++ G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 73 AKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPI-VDSGFNLIFLVAANPVDILT 131
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
+ + + + T LD R I+E + V V + I G H T++P +H
Sbjct: 132 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSH 190
Query: 199 ATV 201
A +
Sbjct: 191 ANI 193
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 103
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 52 VDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 111
Query: 104 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163
+NV+I+K + KH +P+C +LVV+NP + + + + + I LD R
Sbjct: 112 QRNVNIFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSAR 170
Query: 164 AMGQISERLKVHVSDVKNVIIWGNHSST 191
+ ERL VH +I G H +
Sbjct: 171 FRYLMGERLGVHSCSCHGWVI-GEHGDS 197
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 103
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 110
Query: 104 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163
+NV+I+K + KH +P+C +LVV+NP + + + + + I LD R
Sbjct: 111 QRNVNIFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSAR 169
Query: 164 AMGQISERLKVHVSDVKNVIIWGNHSST 191
+ ERL VH +I G H +
Sbjct: 170 FRYLMGERLGVHSCSCHGWVI-GEHGDS 196
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + ++ + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 168
I+K + K+ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SERLKVHVSDVKNVIIWGNHSSTQYP 194
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + ++ + + ++ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 168
I+K + K+ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 169 SERLKVHVSDVKNVIIWGNHSSTQYP 194
ERL VH ++ G H + P
Sbjct: 175 GERLGVHPLSCHGWVL-GEHGDSSVP 199
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138
KD ++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVDILT 132
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
+ + + + T LD R I++ + V V + I G H T++P +H
Sbjct: 133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSV-HAYIMGEHGDTEFPVWSH 191
Query: 199 ATV 201
A +
Sbjct: 192 ANI 194
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANTN 137
C D ++ V+ G +K G R D++SKN+ I+K+ E A+ + +VA NP +
Sbjct: 72 CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVG--EVMASKFDGIFLVATNPVDIL 129
Query: 138 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 197
A +F+ + I T LD R +SE V V II G H T+ P +
Sbjct: 130 AYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWS 188
Query: 198 HATV 201
HA +
Sbjct: 189 HANI 192
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138
C D ++ V+ G +K G R D++SKN+ I+K+ + LV NP + A
Sbjct: 72 CHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI-FLVATNPVDILA 130
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 198
+F+ + I T LD R +SE V V II G H T+ P +H
Sbjct: 131 YATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWSH 189
Query: 199 ATV 201
A +
Sbjct: 190 ANI 192
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK--VLVVANPANT 136
C+D ++ V+ G +K G R D++ KN++I++ S +E A + LV NP +
Sbjct: 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFR---SIVESVMASGFQGLFLVATNPVDI 128
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+F+ + I T LD R + E V +V II G H T+ P
Sbjct: 129 LTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTELPVW 187
Query: 197 NHATVTTSKGEKPVREAV 214
+ A + G P+R+ V
Sbjct: 188 SQAYI----GVMPIRKLV 201
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK--VLVVANPANT 136
C+D ++ V+ G +K G R D++ KN++I++ S +E A + LV NP +
Sbjct: 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFR---SIVESVMASGFQGLFLVATNPVDI 128
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+F+ + I T LD R + E V +V II G H T+ P
Sbjct: 129 LTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTELPVW 187
Query: 197 NHATVTTSKGEKPVREAV 214
+ A + G P+R+ V
Sbjct: 188 SQAYI----GVMPIRKLV 201
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 79 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 138
K I V+ G RK GM R D+ KN I K A + ++A P K+LVV NP +
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMT 125
Query: 139 LIL-KEFAPSIPAKNITCL-TRLDHNRAMGQISERL-KVHVSDVKNVIIWGNHSSTQY 193
I+ KE P + + +LD R + ERL +++ I G H + +
Sbjct: 126 YIMWKESGK--PRNEVFGMGNQLDSQR----LKERLYNAGARNIRRAWIIGEHGDSMF 177
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 80 KDVNIA------VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 133
KD N++ ++ G G R D++ +NV+I KA + +++ P+CK++VV NP
Sbjct: 80 KDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNP 138
Query: 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQY 193
+ ++ + + + I LD R I E+L V+ + ++ G H +
Sbjct: 139 VDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL-GEHGDSSV 197
Query: 194 P---DVNHATVT 202
P VN A VT
Sbjct: 198 PIWSGVNVAGVT 209
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 131
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 132 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 131
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 132 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 142
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 143 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140
D + ++ G +K G R D++ KN I++ + + AAP+ +LV +NP + +
Sbjct: 67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITR-AAPDAVLLVTSNPVDLLTDL 125
Query: 141 LKEFAPSIPAKNITCLTRLDHNR 163
+ AP P I T LD R
Sbjct: 126 ATQLAPGQPV--IGSGTVLDSAR 146
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 80 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 139
K ++ ++ G P+K G R ++ +N + K A + K+ AP+ V+VV NP +
Sbjct: 66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTY 124
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 194
+ + P K T LD R I++ V +V + G H ++ P
Sbjct: 125 FFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSV-HVYVIGEHGDSEVP 178
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVXTQVAYRLS 130
Query: 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 192
P + + T LD R ++E L+V V ++ G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLS 130
Query: 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 192
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLS 130
Query: 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 192
P + + T LD R ++E L+V V ++ G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 145
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALS 130
Query: 146 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 192
P + + T LD R ++E L+V V ++ G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 124
V+ ++ + KD ++ ++ GF + G R D++ N I + K+ PN
Sbjct: 61 VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNNCPN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEF 224
I G H + + TV G P++E + + + E
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDQEL 214
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 124
V ++ + K ++ ++ GF + G R D++ N I + K+ PN
Sbjct: 60 VTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNLCPN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 183
++VV NP + +L E + +P I L LD +R IS++L V DV N +
Sbjct: 119 AFIIVVTNPVDVMVQLLFEHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAL 176
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 223
I G H + + TV G P++E + + + E
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDEE 212
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 124
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
I G H + + TV ++ + + D L F TV
Sbjct: 177 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 222
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 124
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
I G H + + TV ++ + + D L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 124
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
I G H + + TV ++ + + D L F TV
Sbjct: 177 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 222
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 124
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
I G H + + TV ++ + + D L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 83 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137
++ ++ GF + G R D++ N I ++K+ PN ++VV NP +
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM 132
Query: 138 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+L + + +P I L LD +R IS++L V DV N I G H +
Sbjct: 133 VQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAHIVGAHGNKMVLLK 190
Query: 197 NHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
+ TV ++ + + D L F TV
Sbjct: 191 RYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1NAS|A Chain A, Sepiapterin Reductase Complexed With N-acetyl Serotonin
pdb|1OAA|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Oxaloacetate
Length = 259
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 10 VTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGV 69
+TGA+ G AL P +AR +L P ++ + +E++ E + A P LK V
Sbjct: 11 LTGASRGFGRALAPQLAR--LLSPGSVML-----VSARSESMLRQLKEELGAQQPDLKVV 63
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGMER 99
+A D+ + V PR EG++R
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQR 93
>pdb|1SEP|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Sepiapterin
Length = 261
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 10 VTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGV 69
+TGA+ G AL P +AR +L P ++ + +E++ E + A P LK V
Sbjct: 13 LTGASRGFGRALAPQLAR--LLSPGSVML-----VSARSESMLRQLKEELGAQQPDLKVV 65
Query: 70 VATTDVVEACKDVNIAVMVGGFPRKEGMER 99
+A D+ + V PR EG++R
Sbjct: 66 LAAADLGTEAGVQRLLSAVRELPRPEGLQR 95
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 83 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 137
++ ++ GF + G R D++ N I ++K+ PN ++VV NP +
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM 132
Query: 138 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 196
+L + + +P I L LD +R IS++L V DV N I G H +
Sbjct: 133 VQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAHIVGAHGNKMVLLK 190
Query: 197 NHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
+ TV ++ + + D L F TV
Sbjct: 191 RYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 200
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 201 VTTSKGEKPV 210
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 200
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 201 VTTSKGEKPV 210
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 200
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 201 VTTSKGEKPV 210
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 200
L + A KNI + +D N+ +G I+ER D+ I G T+ + A+
Sbjct: 23 LNDIAKVXTEKNIGSVIVVDGNKPVGIITER------DIVKAIGKGKSLETKAEEFXTAS 76
Query: 201 VTTSKGEKPVREAVADDNWLNTEFITTVQQRG 232
+ T + + P+ A+A N + V +G
Sbjct: 77 LITIREDSPITGALALXRQFNIRHLPVVDDKG 108
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 81 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 140
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 141 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 200
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 201 VTTSKGEKPV 210
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From
Hyperthermophilic Archaeon Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 8 VLVTGAAGQIGYALVPMIA 26
+LVTG++GQIG LVP +A
Sbjct: 2 ILVTGSSGQIGTELVPYLA 20
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 8 VLVTGAAGQIGYALVPMIA 26
+LVTG++GQIG LVP +A
Sbjct: 2 ILVTGSSGQIGTELVPYLA 20
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 103
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 52 VDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 111
Query: 104 SKNVSIYKAQASALEKHAAPNC 125
+NV+I+K + KH +P+C
Sbjct: 112 QRNVNIFKFIIPNIVKH-SPDC 132
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 162 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 203
N+ + ++ ER+K + D ++WG + +P H TT
Sbjct: 115 NKILDKVVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATT 156
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+R+LVTG +G +G A+ ++A G L + V + D +L D A
Sbjct: 8 MRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD------------ADLTDTA--- 52
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPR--KEGME--RKDV-MSKNV 107
A + V+ +++A MVGG R K ++ RK+V M+ NV
Sbjct: 53 --QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNV 97
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+R+LVTG +G +G A+ ++A G L + V + D +L D A
Sbjct: 7 MRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD------------ADLTDTA--- 51
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPR--KEGME--RKDV-MSKNV 107
A + V+ +++A MVGG R K ++ RK+V M+ NV
Sbjct: 52 --QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNV 96
>pdb|2OXF|A Chain A, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium In Homodimeric Form At 1.76a
Resolution
pdb|2OXF|F Chain F, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium In Homodimeric Form At 1.76a
Resolution
Length = 250
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE----GMER 99
+ A+ L+G + FP + TT +VEA K + VG + G ER
Sbjct: 106 VTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQER 165
Query: 100 KDVMSKNV 107
D S V
Sbjct: 166 YDTYSGRV 173
>pdb|2I8A|A Chain A, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|B Chain B, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|C Chain C, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|D Chain D, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|E Chain E, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|F Chain F, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2IQ5|A Chain A, Unliganded Crystal Structure Of The Uridine Phosphorylase
From Salmonella Typhimurium At 1.90 A Resolution
pdb|2IQ5|B Chain B, Unliganded Crystal Structure Of The Uridine Phosphorylase
From Salmonella Typhimurium At 1.90 A Resolution
pdb|2OEC|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2QDK|A Chain A, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|B Chain B, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|C Chain C, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|D Chain D, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|E Chain E, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|F Chain F, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2RJ3|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
Length = 252
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 44 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE----GMER 99
+ A+ L+G + FP + TT +VEA K + VG + G ER
Sbjct: 108 VTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQER 167
Query: 100 KDVMSKNV 107
D S V
Sbjct: 168 YDTYSGRV 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,051,132
Number of Sequences: 62578
Number of extensions: 347792
Number of successful extensions: 952
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 119
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)