RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019990
(332 letters)
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 495 bits (1276), Expect = e-178
Identities = 174/333 (52%), Positives = 225/333 (67%), Gaps = 7/333 (2%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+I E A +AL GV ME+
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59 IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
D AFPLL G+ A D + A KD ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 KHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRA+ QI+ + VS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238
++ + +WGNHS T Y D +A + V++ + DD W F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWS 298
R +SSA SAA++A DHI DWVLGT G W +MG+ SDGSYGIPEG+I+ FPVT E GE+
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query: 299 IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
IV+GL +D FS+ +++ T EL EE+ L
Sbjct: 296 IVQGLSIDAFSQERINVTLNELLEEQNGVQHLL 328
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 493 bits (1270), Expect = e-177
Identities = 174/322 (54%), Positives = 224/322 (69%), Gaps = 5/322 (1%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 62
K P+RV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 122
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 242
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR S
Sbjct: 182 TVWGNHSSTMFPDLFHAEV----DGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 302
SA SAA++A +HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LKVDEFSRAKMDATAEELAEEK 324
L+++EF+R +M+ TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDEM 318
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 487 bits (1255), Expect = e-175
Identities = 199/329 (60%), Positives = 246/329 (74%), Gaps = 1/329 (0%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 64
P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A P
Sbjct: 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 62
Query: 65 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 124
LLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A +
Sbjct: 63 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 184
KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVII
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 182
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARKLSSA
Sbjct: 183 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSA 242
Query: 245 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGL 303
+SAA + CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL
Sbjct: 243 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL 302
Query: 304 KVDEFSRAKMDATAEELAEEKTLAYSCLN 332
+++FSR KMD TA+ELAEEK A+ L+
Sbjct: 303 PINDFSREKMDLTAKELAEEKETAFEFLS 331
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 477 bits (1230), Expect = e-170
Identities = 137/333 (41%), Positives = 188/333 (56%), Gaps = 6/333 (1%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
K + + V+GAAG I L+ +A G + G DQP+ L +L E + +AL GV MEL D
Sbjct: 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 87
Query: 61 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 120
+ +PLL+ V D E +DV+ A+++G PR GMER ++ N I+ Q AL
Sbjct: 88 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 180
A+ N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ + V V
Sbjct: 148 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 207
Query: 181 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 240
NV IWGNHS+TQ PD +A + +PV+E + WL EF TVQ+RG A+I+
Sbjct: 208 NVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 263
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEK-GEWS 298
SSA S A S D I+ V TP+G W S GVY+ G+ YGI E +++S P + G++
Sbjct: 264 RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323
Query: 299 IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 331
+ + D+F ++ + EL EK
Sbjct: 324 LATDVSNDDFLWERIKKSEAELLAEKKCVAHLT 356
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 316 bits (812), Expect = e-107
Identities = 79/324 (24%), Positives = 130/324 (40%), Gaps = 19/324 (5%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
++ + GAAG IG + A L P+ + L +P A L GV E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGF 59
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
L + T+D+ EA D V GG PRKEGM R+D++ N I ++ +
Sbjct: 60 EGL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 183
V+++ NPA+ L+ ++ + +T L LD R ++++ + S V N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 184 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT---EFITTVQQRGAAIIKARK 240
+G H + A V P+ + + D N E V + GA IIK R
Sbjct: 178 TYGGHGEQMAVFASTAKV----NGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG 233
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SS S + + + IR + G W + Y + G ++ + G
Sbjct: 234 RSSFQSPSYVSIEMIRAAMGGE-AFRWPAG-CYVNV-PGFEHIMMAMETTITKDGVKHSD 290
Query: 301 KGLKVDEFSRAKMDATAEELAEEK 324
+E RA + + LA+ +
Sbjct: 291 INQLGNEAERAALKESYSHLAKLR 314
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 88.3 bits (220), Expect = 3e-20
Identities = 65/331 (19%), Positives = 117/331 (35%), Gaps = 50/331 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
+V V GAAG +G A IA R I D+ V +DI + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIA---DEVV---FVDIPDKEDDTVGQAADTNHGI-AY 54
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
E ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 55 DSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDY 113
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLK 173
L +NP + L E + +G +SE
Sbjct: 114 ISLTTSNPVDLLNRHLYEA------------GDRSREQVIGFGGRLDSARFRYVLSEEFD 161
Query: 174 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 233
V +V+ I+ G H Q P + +V + + + + +Q+
Sbjct: 162 APVQNVEGTIL-GEHGDAQVPVFSKVSV----DGTDPEFSGDEKE----QLLGDLQESAM 212
Query: 234 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVT- 291
+I+ + + + H+ + +L S V +G +G E + PV+
Sbjct: 213 DVIE--RKGATEWGPARGVAHMVEAILHDTGEVLPAS--VKLEGEFGH-EDTAFGVPVSL 267
Query: 292 CEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G IV+ +D++ + M AE+L++
Sbjct: 268 GSNGVEEIVE-WDLDDYEQDLMADAAEKLSD 297
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 85.7 bits (213), Expect = 3e-19
Identities = 46/262 (17%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
+ ++ ++ ++ G PRK GM R D++ N+ + + ++ + PN V+ + NP +
Sbjct: 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
+L++F + + N+ +G +++ L V V V+ ++
Sbjct: 128 MVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H T P + V + + + + L E + + R G I+ K
Sbjct: 176 -GGHGDTMVPLTKMSNV----AGVSLEQ-LVKEGKLKQERLDAIVSRTRSGGGEIVALLK 229
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SA A ++A + + L K G YG+ E L P +
Sbjct: 230 TGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI 289
Query: 301 KGLKVDEFSRAKMDATAEELAE 322
+ +++ + R ++ + + +
Sbjct: 290 E-VEISDKEREQLQVSINAIKD 310
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 85.3 bits (212), Expect = 4e-19
Identities = 62/335 (18%), Positives = 121/335 (36%), Gaps = 42/335 (12%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M +V V GA G G ++A V++ DI G +++++
Sbjct: 4 MTIKRKKVSVIGA-GFTGATTAFLLA---QKELADVVLV---DIPQLENPTKGKALDMLE 56
Query: 61 AA-FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 119
A+ + T D ++ V+ G RK GM R D+++ N I K+ + K
Sbjct: 57 ASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAK 116
Query: 120 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ 167
H +PN ++V+ NP + + + R +GQ
Sbjct: 117 H-SPNAIIVVLTNPVDAMTYSVFKE------------AGFPKERVIGQSGVLDTARFRTF 163
Query: 168 ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITT 227
I++ L + V D+ ++ G H P V ++ G P+ + + +
Sbjct: 164 IAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYA----GGIPLETLIPKERL--EAIVER 216
Query: 228 VQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
++ G I+ SA A +++ + + +L + + Y +G YG L
Sbjct: 217 TRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRV-LPAIAYLEGEYGY-SDLYLG 274
Query: 288 FPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
PV + L++ + +D + E +
Sbjct: 275 VPVILGGNGIEKIIELELLADEKEALDRSVESVRN 309
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 84.5 bits (210), Expect = 7e-19
Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 35/266 (13%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V + D + +I ++ G PRK GM R+D++ KN I K + KH + N ++
Sbjct: 58 VTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIII 115
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VV+NP + + + L R +G I+ L V +
Sbjct: 116 VVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
D+ ++ G H P V + TV P+ + + + + + + GA I+
Sbjct: 164 QDINACVL-GGHGDAMVPVVKYTTV----AGIPISDLLPAETI--DKLVERTRNGGAEIV 216
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
+ K SA A +S+ + + ++ K + V +G YGI + PV +
Sbjct: 217 EHLKQGSAFYAPASSVVEMVESIVLDRKRV-LPCAVGLEGQYGI-DKTFVGVPVKLGRNG 274
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAE 322
+ + +D+ + +A+ + E
Sbjct: 275 VEQIYEINLDQADLDLLQKSAKIVDE 300
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 84.6 bits (210), Expect = 7e-19
Identities = 74/336 (22%), Positives = 125/336 (37%), Gaps = 56/336 (16%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFP 64
+V V GA+G IG L ++ P++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKN-------SPLVSRLTLYDIAHT----PGVAADLSHIETR 50
Query: 65 L-LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 123
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109
Query: 124 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDV 179
+ + +++NP N+ A + K+ I +T LD RA ++E + + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHG-VYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 168
Query: 180 KNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 238
+V + G H+ T P ++ T K + P + +Q+ G ++KA
Sbjct: 169 -SVPVIGGHAGKTIIPLISQCTP---KVDFPQDQLST--------LTGRIQEAGTEVVKA 216
Query: 239 RK------LSSALSAASSA---CDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP 289
+ LS A + A D + K V P Y F
Sbjct: 217 KAGAGSATLSMAYAGARFVFSLVDAMNG------KEGVVECSFVKSQETDCP----Y-FS 265
Query: 290 VTCEKGEWSIVKGLKVDEFS---RAKMDATAEELAE 322
G+ I K L + + S + EL
Sbjct: 266 TPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 84.5 bits (210), Expect = 9e-19
Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ + E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+
Sbjct: 71 IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+ NP + KE + + N+ G +S L V
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----G 232
SDV +++ G H P + T+ G + + + + I + ++ G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTI----GGILLSD-FVEQGKITHSQINEIIKKTAFGG 230
Query: 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 292
I++ K SA A +++ + L K + Y G Y + L PV
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSV-LVCSTYLTGQYNV-NNLFVGVPVVI 288
Query: 293 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
K V + + + ++ + E +
Sbjct: 289 GKNGIEDVVIVNLSDDEKSLFSKSVESIQN 318
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 84.1 bits (209), Expect = 1e-18
Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 44/270 (16%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V T D +D ++ ++ G PR GM R D+++KN I + +P+ ++
Sbjct: 58 VTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTII 115
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VVANP + + E + NR MG I+E L V V
Sbjct: 116 VVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEELDVSV 163
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
DV+ +++ G H T P + TV G PV + + D E + + G I+
Sbjct: 164 RDVQALLM-GGHGDTMVPLPRYTTV----GGIPVPQLIDDARI--EEIVERTKGAGGEIV 216
Query: 237 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 292
S+ +AA ++D + Y DG YG+ + L PV
Sbjct: 217 DLMGTSAWYAPGAAAAEMTEAILKD------NKRILPCAAYCDGEYGL-DDLFIGVPVKL 269
Query: 293 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G V + +D +A++ +A +
Sbjct: 270 GAGGVEEVIEVDLDADEKAQLKTSAGHVHS 299
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 83.4 bits (207), Expect = 2e-18
Identities = 70/328 (21%), Positives = 124/328 (37%), Gaps = 38/328 (11%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
++V V GAAG IG AL ++ + G + L + DI P GV ++L +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53
Query: 66 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 125
+ D A + ++ ++ G RK GM+R D+ + N I K + K P
Sbjct: 54 KIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKA 112
Query: 126 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 181
+ ++ NP NT A +LK+ A + +T LD R+ ++E +V+
Sbjct: 113 CIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEV 171
Query: 182 VIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK- 240
+I G+ T P + + E + +Q G +++A+
Sbjct: 172 PVIGGHSGVTILP------LLSQVPGVSFTEQEVA------DLTKRIQNAGTEVVEAKAG 219
Query: 241 -----LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKG 295
LS +AA +R L +G V DG +S P+ K
Sbjct: 220 GGSATLSMGQAAARFGLSLVRA--LQGEQGVVECAYVEGDG----QYARFFSQPLLLGKN 273
Query: 296 EWSIVKGL-KVDEFSRAKMDATAEELAE 322
K + + F + ++ + L +
Sbjct: 274 GVEERKSIGTLSAFEQNALEGMLDTLKK 301
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 83.3 bits (207), Expect = 2e-18
Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 44/270 (16%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ + E + +I ++ G RK GM R+ ++ N + A ++ + A + V+
Sbjct: 56 ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+ NP + ++ + T R +G IS++L V
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
V +++ G H +P ++V G P+ ++ + E ++ GA I
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKIT 214
Query: 237 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 292
+ R SS A + RD +Y G YG ++ P
Sbjct: 215 ELRGYSSNYGPAAGLVLTVEAIKRD------SKRIYPYSLYLQGEYGY-NDIVAEVPAVI 267
Query: 293 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
K + L + E + K D + + +
Sbjct: 268 GKSGIERIIELPLTEDEKRKFDEAVQAVKK 297
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 83.0 bits (206), Expect = 3e-18
Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 42/275 (15%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAP 123
V A A + ++ G + G R D++ N I + ++K+ P
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISER 171
++VV NP + ++ E + + N G +++
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172
Query: 172 LKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR 231
L V DV+ +I G H P V + TV P+++ D + + + + +
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITV----NGYPIQK-FIKDGVVTEKQLEEIAEH 226
Query: 232 ----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
G I++ SA A +++ + L K + VY +G YG+ + +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRV-IPCSVYCNGEYGL-KDMFIG 284
Query: 288 FPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
P V L+++E + + + +++
Sbjct: 285 LPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMA 319
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 82.5 bits (205), Expect = 4e-18
Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 35/266 (13%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
V T + + ++ V+ G PRK GM R+D++ N I +A S +PN ++
Sbjct: 59 VTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVII 116
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+V NP + + E + R +GQ I+ V V
Sbjct: 117 MVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFIAMEAGVSV 164
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
DV+ +++ G H P + + PV E +A D + + ++ G I+
Sbjct: 165 EDVQAMLM-GGHGDEMVPLPRFSCI----SGIPVSEFIAPDRL--AQIVERTRKGGGEIV 217
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
K SA A ++A + + VL K + + Y G YG+ + + PV G
Sbjct: 218 NLLKTGSAYYAPAAATAQMVEAVLKDKKRV-MPVAAYLTGQYGL-NDIYFGVPVILGAGG 275
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAE 322
+ L ++E A ++A+A+ +
Sbjct: 276 VEKILELPLNEEEMALLNASAKAVRA 301
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 82.2 bits (204), Expect = 5e-18
Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 37/262 (14%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
++ ++ P + +R +++ N I + A ++K+ PN V+ + NP +
Sbjct: 68 ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDV 126
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
++ + L HN+ G I++ V+ SDV +I
Sbjct: 127 MVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H P + +V G P+ + + E I + + K
Sbjct: 175 -GGHGDGMVPATSSVSV----GGVPLSSFI-KQGLITQEQIDEIVCHTRIAWKEVADNLK 228
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
+A A ++A + + L K V + YG+ +G+ P K +
Sbjct: 229 TGTAYFAPAAAAVKMAEAYLKDKKAV-VPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDI 286
Query: 301 KGLKVDEFSRAKMDATAEELAE 322
L + + + + E+
Sbjct: 287 LELDLTPLEQKLLGESINEVNT 308
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 82.2 bits (204), Expect = 5e-18
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 37/262 (14%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDA 129
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
L++F + L ++ +G +SE V V DV ++
Sbjct: 130 MVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H + P ++TV P+ + V W + + + + QR GA I+ K
Sbjct: 178 -GGHGDSMVPLARYSTV----AGIPLPDLV-KMGWTSQDKLDKIIQRTRDGGAEIVGLLK 231
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 300
SA A +++ + + L K + + G YG+ + + P +
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKKRV-LPVAAQLSGQYGV-KDMYVGVPTVIGANGVERI 289
Query: 301 KGLKVDEFSRAKMDATAEELAE 322
+ +D+ +A+ D + +A
Sbjct: 290 IEIDLDKDEKAQFDKSVASVAG 311
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 81.1 bits (201), Expect = 1e-17
Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 44/335 (13%)
Query: 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMEL- 58
+V + GAAG IG L ++ P++ LH+ D+ A GV ++
Sbjct: 5 GAPGFKVAILGAAGGIGQPLAMLMKM-------NPLVSVLHLYDVVNA----PGVTADIS 53
Query: 59 -IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 117
+D + +G + + A +++ ++ G PRK GM R D+ N I K +
Sbjct: 54 HMDTGAVV-RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI 112
Query: 118 EKHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKV 174
K P V +++NP N+ I E A + K + +T LD RA ++E L +
Sbjct: 113 AKC-CPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGL 171
Query: 175 HVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAA 234
DV ++ G+ T P ++ +S ++ + +Q G
Sbjct: 172 DPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR-----------IQNGGTE 220
Query: 235 IIKARK------LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSF 288
+++A+ LS A +A A +R L G V + E ++
Sbjct: 221 VVEAKAGAGSATLSMAYAAVKFADACLRG--LRGDAG--VIECAFVSSQVT--ELPFFAS 274
Query: 289 PVTCEKGEWSIVKGL-KVDEFSRAKMDATAEELAE 322
V + V L ++E+ R ++ +ELA
Sbjct: 275 KVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAG 309
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 81.1 bits (201), Expect = 1e-17
Identities = 61/334 (18%), Positives = 130/334 (38%), Gaps = 46/334 (13%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--- 62
++V + GA+G++G A ++A + ++L + E + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLA---KEPFMKDLVL--IGREHSINKLEGLREDIYDALAGT 55
Query: 63 -FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 121
V + + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 56 RSDA-NIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI- 113
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------IS 169
K+ V+ NP + ++ + N+ G I+
Sbjct: 114 CDT-KIFVITNPVDVMTYKALVD------------SKFERNQVFGLGTHLDSLRFKVAIA 160
Query: 170 ERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 229
+ VH+ +V+ II G H + P ++ ++ G P+++ E I V+
Sbjct: 161 KFFGVHIDEVRTRII-GEHGDSMVPLLSATSI----GGIPIQKFERFKELPIDEIIEDVK 215
Query: 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSF 288
+G II+ + ++A ++ ++ K +S Y DG + +
Sbjct: 216 TKGEQIIR--LKGGSEFGPAAAILNVVRCIVNNEKRLLTLS--AYVDGEFDGIRDVCIGV 271
Query: 289 PVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
PV + V +++D+ +AE + +
Sbjct: 272 PVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK 305
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 78.3 bits (194), Expect = 1e-16
Identities = 74/345 (21%), Positives = 132/345 (38%), Gaps = 61/345 (17%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
K+ +V++ G G +G YA+V IA+ I + +DI + G
Sbjct: 5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGI----------VDI--FKDKTKGDA 51
Query: 56 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
++L +A P + KD ++ V+ G P+K G R D+++KN+ I K+
Sbjct: 52 IDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVD 110
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 167
+ N LV ANP + + L+ NR +G
Sbjct: 111 PIVDS-GFNGIFLVAANPVDILTYATWK------------LSGFPKNRVVGSGTSLDTAR 157
Query: 168 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 223
I+E + V V I+ G H T++P +HA + G + E V + +
Sbjct: 158 FRQSIAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKED 212
Query: 224 FITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSY 278
+ + + IIK + + ++A I +L +S VY DG Y
Sbjct: 213 KLVKMFEDVRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPLS--VYMDGQY 268
Query: 279 GIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G+ + P V G +I++ + + + M +A +L +
Sbjct: 269 GL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKSASQLKK 311
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 77.2 bits (191), Expect = 3e-16
Identities = 75/346 (21%), Positives = 124/346 (35%), Gaps = 62/346 (17%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
M K+ +V + GA G +G +AL+ I +++ +D+ E G
Sbjct: 1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVV----------IDV--NKEKAMGDV 47
Query: 56 MELIDA-AFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQA 114
M+L AF + E CKD +I + G +K G R +++ KN+ I+K
Sbjct: 48 MDLNHGKAFAPQPVKTSYGTY-EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIV 106
Query: 115 SALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------- 167
S + + LV NP + + + L R +G
Sbjct: 107 SEVMAS-GFDGIFLVATNPVDILTYATWK------------FSGLPKERVIGSGTTLDSA 153
Query: 168 -----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT 222
+SE +V II G H T+ P +HA V G PV E V ++
Sbjct: 154 RFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQ 208
Query: 223 EFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGS 277
E + + II+ + + + + I +L VS Y DG
Sbjct: 209 EELDQIVDDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTVS--TYLDGQ 264
Query: 278 YGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
YG + + P V G I + L ++E + + +A L
Sbjct: 265 YGA-DDVYIGVPAVVNRGGIAGITE-LNLNEKEKEQFLHSAGVLKN 308
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 76.8 bits (190), Expect = 4e-16
Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 49/276 (17%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+V++ D + + ++ G ++EG R +++ +NV+I+K + K+ +P CK+L
Sbjct: 76 IVSSKDY-SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133
Query: 129 VVANPANTNA-LILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVH 175
+V+NP + + K ++ NR +G + ERL VH
Sbjct: 134 IVSNPVDILTYVAWK-------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVH 180
Query: 176 VSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT-----EFITTVQQ 230
++ G H + P + V ++ + V
Sbjct: 181 PLSCHGWVL-GEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQWKDVHKQVVD 235
Query: 231 RGAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
+IK + +S LS A A +++ + G YGI E + S
Sbjct: 236 SAYEVIKLKGYTSWAIGLSVADLAESIMKN------LRRVHPISTMIKGLYGIKEDVFLS 289
Query: 288 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
P + + G +VK + + A++ +A+ L
Sbjct: 290 VPCILGQNGISDVVK-VTLTPDEEARLKKSADTLWG 324
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 76.0 bits (188), Expect = 7e-16
Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 42/276 (15%)
Query: 77 EACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 131
+ ++ ++ GF + G R D++ N I ++K+ PN ++VV
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126
Query: 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDV 179
NP + +L + + + N+ +G IS++L V DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 180 KNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR---GAAII 236
I+ G H + + TV G P++E ++ ++ + + R A I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITV----GGIPLQE-FINNKLISDAELEAIFDRTVNTALEI 228
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 296
+S A ++A + + L K + +G YG + PV
Sbjct: 229 VNLH-ASPYVAPAAAIIEMAESYLKDLKKV-LICSTLLEGQYGH-SDIFGGTPVVLGANG 285
Query: 297 WSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
V L+++ +AK D E K LA+ +
Sbjct: 286 VEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH 321
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 75.8 bits (187), Expect = 8e-16
Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 48/274 (17%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+V+ D + V+ G ++EG R +++ +NV+I+K + KH +P+C
Sbjct: 78 IVSGKDY-SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
+ + L+ L +R +G + ERL VH
Sbjct: 136 LHPELGTDKNKQDWK------------LSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----- 231
V +I G H + + +K K V ++ + + ++
Sbjct: 184 CLVIGWVI-GQHGDSVPSVWSGMWD--AKLHKDVVDSAYE--------VIKLKGYTSWAI 232
Query: 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPV 290
G + + + ++ + + ++ VS YGI + + S P
Sbjct: 233 GLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVS--TMVKDFYGIKDNVFLSLPC 290
Query: 291 TCEKG--EWSIVKGLKVDEFSRAKMDATAEELAE 322
G +IVK +K+ ++ +A L +
Sbjct: 291 VLNNGISHCNIVK-MKLKPDEEQQLQKSATTLWD 323
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 74.5 bits (184), Expect = 2e-15
Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 45/300 (15%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
++D+ + G ++LI P + K ++ ++ G P+K G R
Sbjct: 30 LIDV--DKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRL 86
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
++ +N + K A + K+ AP+ V+VV NP + + + +D
Sbjct: 87 QLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKE------------SGMD 133
Query: 161 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 208
+ G I++ V +I G H ++ P + A + G
Sbjct: 134 PRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMI----GGI 188
Query: 209 PVREAVADDNWLNTEFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPK 264
P++ +++ + ++ II+ + + A + A I + + K
Sbjct: 189 PLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE--RKGATHYAIALAVADIVESIFFDEK 246
Query: 265 GTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
+S VY + G+ + L S P + G I++ L ++E +A L
Sbjct: 247 RVLTLS--VYLEDYLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAFRKSASILKN 302
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 74.1 bits (183), Expect = 3e-15
Identities = 55/267 (20%), Positives = 92/267 (34%), Gaps = 50/267 (18%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+V D K I V+ G RK GM R D+ KN I K A + ++ AP K+L
Sbjct: 58 IVGGADY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKIL 115
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
VV NP + I+ + + N G +
Sbjct: 116 VVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYNAGAR-- 161
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 236
+++ I G H + + + A + EAV +D V+ A +I
Sbjct: 162 -NIRRAWIIGEHGDSMFVAKSLADF----DGEVDWEAVEND----------VRFVAAEVI 206
Query: 237 KARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVTCEKG 295
K + + + + A + V+ S + G YGI E + P K
Sbjct: 207 K--RKGATIFGPAVAIYRMVKAVVEDTGEIIPTS--MILQGEYGI-ENVAVGVPAKLGKN 261
Query: 296 EWSIVKGLKVDEFSRAKMDATAEELAE 322
+ +K+ + K+ +A+ L E
Sbjct: 262 GAEVAD-IKLSDEEIEKLRNSAKILRE 287
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 72.9 bits (180), Expect = 7e-15
Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 49/276 (17%)
Query: 69 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 128
+ + D E C+D ++ V+ G +K G R +++ V+I KA L K APN +
Sbjct: 64 IDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 176
++ NP + + ++ LT L N+ G I+++ V+V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169
Query: 177 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN--WLNTEFITTVQQR--- 231
+V I G H ++ P AT+ G P+ + L+ + + Q
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 232 -GAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 287
II + ++ +S + D + + +GI + S
Sbjct: 225 AAYKIINGKGATNYAIGMSGVDIIEAVLHD------TNRILPVSSMLKDFHGI-SDICMS 277
Query: 288 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
P + +G + + V + A + +AE L E
Sbjct: 278 VPTLLNRQGVNNTIN-TPVSDKELAALKRSAETLKE 312
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 72.9 bits (180), Expect = 8e-15
Identities = 71/346 (20%), Positives = 131/346 (37%), Gaps = 62/346 (17%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
M K+ +V + GA G +G + + A ++L +D+ E G
Sbjct: 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVL----------IDV--FKEKAIGEA 49
Query: 56 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
M++ P + + KD ++ V+ G RK G R D+ KNV I K
Sbjct: 50 MDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 108
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 167
+ K+ + +LVV+NP + ++++ + L + +G
Sbjct: 109 NIMKY-YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIR 155
Query: 168 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT- 222
+SE+L V V +V II G H +Q P + + K + E + D T
Sbjct: 156 FRYLLSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTE 210
Query: 223 ----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGS 277
+ V+ GA IIK + + + + I + +L V +G
Sbjct: 211 EDKKKIAEDVKTAGATIIK--NKGATYYGIAVSINTIVETLLKNQNTIRTVG--TVINGM 266
Query: 278 YGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
YGI E + S P + +G +++ + + +AE++ +
Sbjct: 267 YGI-EDVAISLPSIVNSEGVQEVLQ-FNLTPEEEEALRFSAEQVKK 310
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 72.5 bits (179), Expect = 1e-14
Identities = 67/344 (19%), Positives = 120/344 (34%), Gaps = 58/344 (16%)
Query: 1 MAKNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVK 55
RV+V GA G +G +AL+ IA I+L +D G
Sbjct: 2 KNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVL----------IDA--NESKAIGDA 48
Query: 56 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
M+ K V + C+D ++ V+ G +K G R D++ KN++I+++
Sbjct: 49 MDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVE 108
Query: 116 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 167
++ LV NP + + + L H R +G
Sbjct: 109 SVMAS-GFQGLFLVATNPVDILTYATWK------------FSGLPHERVIGSGTILDTAR 155
Query: 168 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 223
+ E V +V II G H T+ P + A + G P+R+ V +
Sbjct: 156 FRFLLGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQK 210
Query: 224 FITTVQQR---GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYG 279
+ + A I +K + + + +L VS Y DG YG
Sbjct: 211 DLERIFVNVRDAAYQIIEKK-GATYYGIAMGLARVTRAILHNENAILTVS--AYLDGLYG 267
Query: 280 IPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
+ P V G +++ +++++ + + +A L
Sbjct: 268 E-RDVYIGVPAVINRNGIREVIE-IELNDDEKNRFHHSAATLKS 309
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 71.5 bits (176), Expect = 2e-14
Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 43/289 (14%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
+LD+ + +D L V + D+ A + +
Sbjct: 44 LLDLSEGTKG------ATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVN-SLGSSQSYL 95
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
DV+ NV +++A AL + + + +LV + P + + + + I LD
Sbjct: 96 DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLD 154
Query: 161 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL 220
R I+ LK S + +I G + + S
Sbjct: 155 SQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEEVVSH--------------- 198
Query: 221 NTEFITTVQQRGAAIIKARKLSS---ALSAASSACDHIRDW--VLGTPKGTWVSMGVYSD 275
+ R +++ + S LS A + + V VS +
Sbjct: 199 --TSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVH--S----VS--ALAK 248
Query: 276 GSYGIPEGLIYSFP-VTCEKGEWSIVK-GLKVDEFSRAKMDATAEELAE 322
G Y I + S P + G ++K LK D K+ ++A +
Sbjct: 249 GYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDT-VTEKLQSSASSIHS 296
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 71.0 bits (175), Expect = 4e-14
Identities = 64/345 (18%), Positives = 128/345 (37%), Gaps = 66/345 (19%)
Query: 3 KNPLRVLVTGAAGQIG----YALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVKME 57
N +V++ G G +G +A+ IA ++ +D+ + G ++
Sbjct: 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVI----------VDV--VKDRTKGDALD 49
Query: 58 LIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 117
L DA + CKD ++ V+ G P+K G R D+++KN++I + +
Sbjct: 50 LEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPV 108
Query: 118 EKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ---------- 167
+ LV ANP + + + R +G
Sbjct: 109 VDS-GFDGIFLVAANPVDILTYATWK------------FSGFPKERVIGSGTSLDSSRLR 155
Query: 168 --ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFI 225
+ ++ V V I+ G H +++ + AT+ G +PVR+ VA + ++ + +
Sbjct: 156 VALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI----GTRPVRD-VAKEQGVSDDDL 209
Query: 226 TTVQQR---GAAIIKARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY 278
++ A I K ++ + + +RD + + +G Y DG Y
Sbjct: 210 AKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRD------ENAVLPVGAYMDGQY 263
Query: 279 GIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 322
G+ + P + G I++ + KM +A L +
Sbjct: 264 GL-NDIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQDSAATLKK 306
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 71.0 bits (175), Expect = 4e-14
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 43/264 (16%)
Query: 77 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 136
C D ++ V+ G +K G R D++SKN+ I+K+ + + LV NP +
Sbjct: 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 184
A + + L R +G +SE V V II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 185 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 240
G H T+ P +HA + +P++ + + I + + II+A+
Sbjct: 177 -GEHGDTELPVWSHANI----AGQPLKT-LLEQRPEGKAQIEQIFVQTRDAAYDIIQAKG 230
Query: 241 LSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWS 298
+ + I + + VS +G Y E + P V G +
Sbjct: 231 --ATYYGVAMGLARITEAIFRNEDAVLTVS--ALLEGEYEE-EDVYIGVPAVINRNGIRN 285
Query: 299 IVKGLKVDEFSRAKMDATAEELAE 322
+V+ + +++ ++K +A+ L +
Sbjct: 286 VVE-IPLNDEEQSKFAHSAKTLKD 308
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 70.6 bits (174), Expect = 4e-14
Identities = 49/301 (16%), Positives = 99/301 (32%), Gaps = 46/301 (15%)
Query: 41 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 100
++D+ + +++ A P V + V+ G ++ G R
Sbjct: 30 LVDL--DRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRL 86
Query: 101 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
++ +N ++ + + AP +LV NP + + L+ L
Sbjct: 87 QLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LSGLP 133
Query: 161 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 208
R +G ++E L+V V ++ G H ++ + A V G
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV----GGV 188
Query: 209 PVREAVADDNWLNT-----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263
P+ E + V++ II+ + + + + +L
Sbjct: 189 PLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG--ATYYGIGAGLARLVRAILTDE 246
Query: 264 KGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 321
KG + VS ++ G+ + S P + G V + RA + +AE L
Sbjct: 247 KGVYTVS--AFTPEVAGV-LEVSLSLPRILGAGGVAGTVY-PSLSPEERAALRRSAEILK 302
Query: 322 E 322
E
Sbjct: 303 E 303
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 70.2 bits (173), Expect = 7e-14
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 22/205 (10%)
Query: 41 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGM 97
++D + AEA ++ AA P+ G D + ++ G +K G
Sbjct: 30 LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
R D++ KN I++ + + AP+ +LV +NP + + + AP I T
Sbjct: 84 SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140
Query: 158 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD 217
LD R +++ V + ++ G H ++ + A V PV + +
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV----AGMPVADFMQAQ 195
Query: 218 NWLNTEF-----ITTVQQRGAAIIK 237
N E + A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 59.4 bits (145), Expect = 2e-10
Identities = 25/216 (11%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 41 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPR---- 93
+D A A+ ++ DA L + A D ++ + G +
Sbjct: 31 FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85
Query: 94 KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
+R + S+ ++ + L++ + ++V++NP + + +
Sbjct: 86 NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134
Query: 154 TCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV 201
+T ++ +G + E + V + G H ++Q+ + V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191
Query: 202 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 237
+P+ + ++ G ++
Sbjct: 192 ----MGQPIVTLADAGDIDLAAIEEEARKGGFTVLN 223
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 49.3 bits (117), Expect = 9e-07
Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 34/214 (15%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M+ + +++ G G G+A + + + + + D++ EA K E+I
Sbjct: 1 MSLDQIKIAYIGG-GSQGWA--RSLMSDLSIDERMSGTVALYDLDF--EAAQ--KNEVIG 53
Query: 61 AAFPLLKG-VVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS--- 104
+ A + + +A + I+++ G P + G+ + +
Sbjct: 54 NHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGP 113
Query: 105 -------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
+ V I+ A A+ +A P V+ NP + +L + P I A
Sbjct: 114 GGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEV 172
Query: 158 RLDHN---RAMGQISERLKVHVSDVKNVIIWGNH 188
+ + D++ ++ NH
Sbjct: 173 FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH 206
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 45.9 bits (108), Expect = 9e-06
Identities = 44/255 (17%), Positives = 82/255 (32%), Gaps = 37/255 (14%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLG-PDQPVI-LHMLDIEPAAEALNGVKMEL 58
M K +++ G G P I ++ + P+ L + D + + ++
Sbjct: 24 MKKKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV 79
Query: 59 IDAAFPLLKGVVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
ATTD EA DV+ + VG + P K G+ ++
Sbjct: 80 FIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPG 139
Query: 105 ------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT---- 154
+++ +EK++ P+ +L +NPA A + P+ NI
Sbjct: 140 GIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPV 198
Query: 155 CLTRLDHNRAMGQISERLKVHVSDVKNVI----IWGNHSSTQYPDVNHATVTTSKGEKPV 210
+ + +KV + + I + P + + G P
Sbjct: 199 GIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEH--VSQYGYIPK 256
Query: 211 REAVADDNWLNTEFI 225
EA A + N F
Sbjct: 257 TEAEAVEASWNDTFA 271
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 41.2 bits (97), Expect = 3e-04
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
+ + + + GAAG +G L + + LG ++D+
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAG------FS 63
Query: 61 AAFPLLKGVVATTDVVEACKDVNI-------AVMVGG 90
A ++ E + A++ G
Sbjct: 64 GAVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGE 100
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 40.9 bits (95), Expect = 4e-04
Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 38/243 (15%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKM-- 56
M K ++ G G + P + G++ + + L ++DI E L V
Sbjct: 4 MDKRL-KIATIGG----GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA 58
Query: 57 ELIDAAFPLLKGVVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS 104
+ + + + T D A + VGG P K G+ ++
Sbjct: 59 KRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNG 118
Query: 105 --------KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ + + +E+ P+ ++ NPA + + + C
Sbjct: 119 PGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVTEAVLRYTKQEKVVGL-CN 176
Query: 157 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD 216
+++ L V V NH H + + + V + VA
Sbjct: 177 V---PIGMRMGVAKLLGVDADRVHIDFAGLNHMVF----GLHVYLDGVEVTEKVIDLVAH 229
Query: 217 DNW 219
+
Sbjct: 230 PDR 232
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
R+LVTGAAGQ+G + + + + + ++PA V+ +L DA
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMA-----EILRLADLSPLDPAGPNEECVQCDLADAN--A 57
Query: 66 LKGVVATTDVV 76
+ +VA D +
Sbjct: 58 VNAMVAGCDGI 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 9e-04
Identities = 52/357 (14%), Positives = 112/357 (31%), Gaps = 102/357 (28%)
Query: 43 DIEPAAEALNGVKMELIDAAFPLLKGVVA----------TTDVVEAC-----------KD 81
D EP A EL+ F L G V+ V+ C D
Sbjct: 51 DDEPTTPA------ELV-GKF--L-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 82 VN-IAVMVGGFPRKEGMERKDV--------MSKNVSIYKAQASALEKHA-APNCKVLVV- 130
++ +A + ++ K++ + K SAL + N +++ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 131 ---ANPA----------NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVS 177
N T +++ + A+ ++ L R + +E++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLD------AEKVFTQGL 213
Query: 178 DVKNVIIWGNHSSTQYPDVNH-ATVTTSKGEKPVREAVADDNWLNT---------EFITT 227
++ W + S PD ++ ++ S P+ + +++ T E +
Sbjct: 214 NILE---WLENPSNT-PDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 228 VQ---QRGAAIIKARKLSSALSAAS--SACDHIRDWVLGTPKGTWVSMGVYSDGSYGI-- 280
++ ++ A ++ S S + + ++ GV +Y
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF------FI--GVRCYEAYPNTS 318
Query: 281 --PEGLIYSFPVTCEKGEWS---IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 332
P L S + +G S + L E + ++ T L K + S +N
Sbjct: 319 LPPSILEDS--LENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVN 372
Score = 33.5 bits (76), Expect = 0.11
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIAR--GIML------GPDQPVIL--HMLDIEPAAEA 50
+A NP RV + + + Y +V + + G ++ +Q + + ++
Sbjct: 1810 IAINPGRVAASFSQEALQY-VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 51 LNGVKMELIDAA 62
LN +K++ ID
Sbjct: 1869 LNFIKLQKIDII 1880
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 37.6 bits (88), Expect = 0.004
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 RVLVTGAAGQIGYALV 22
++L+ GA GQIG L
Sbjct: 4 KILIIGACGQIGTELT 19
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 36.6 bits (84), Expect = 0.009
Identities = 28/204 (13%), Positives = 62/204 (30%), Gaps = 31/204 (15%)
Query: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAA 62
+R+ V G G + P + +G++ + I + DI+ + + ++ +
Sbjct: 2 HMRIAVIGG----GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD 57
Query: 63 FPLLKGVVATTDVVEACKD---VNIAVMVGGF---------PRKEGMERKD------VMS 104
V+ + A D V GG P K G+ ++ +
Sbjct: 58 RFK---VLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSA 114
Query: 105 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164
+ + N ++ NP+ ++ + + C
Sbjct: 115 ALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYEKFIGL-CNV---PINF 170
Query: 165 MGQISERLKVHVSDVKNVIIWGNH 188
+ +I+E + DV NH
Sbjct: 171 IREIAEMFSARLEDVFLKYYGLNH 194
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 36.1 bits (84), Expect = 0.014
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
+ +P L+TG AG IG L+
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLL 42
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.7 bits (83), Expect = 0.015
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
+ P L+TG AG IG L+
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLL 44
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 35.4 bits (82), Expect = 0.018
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 8 VLVTGAAGQIGYALVPM----------IARGIMLGPDQPVILHMLDIEPAAEALNGVKME 57
+LVTG++GQIG LVP IA I+ + LD+ E V+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKY 61
Query: 58 LIDAAFPL--LKGVVATTDVVEACKDVNI 84
IDA F L + D A VN+
Sbjct: 62 SIDAIFHLAGILSAKGEKDPALAY-KVNM 89
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 35.4 bits (82), Expect = 0.018
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDI 44
R LV G AG IG A+ I + P + LH++DI
Sbjct: 37 RFLVLGGAGSIGQAVTKEIFK---RNPQK---LHVVDI 68
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 34.6 bits (80), Expect = 0.033
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
R+LVTGAAG +G A+ P + + + ++D+ A V +L DA
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLA-----HEVRLSDIVDLGAAEAHEEIVACDLADAQ--A 56
Query: 66 LKGVVATTDVV 76
+ +V D +
Sbjct: 57 VHDLVKDCDGI 67
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 34.5 bits (80), Expect = 0.036
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 2 AKNPLRVLVTGAAGQIGYALV 22
+ +V +TG GQIG +
Sbjct: 18 GSHMKKVFITGICGQIGSHIA 38
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 33.4 bits (77), Expect = 0.094
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
+ PL++ + G+ G A+ ++ + M + V ++I+
Sbjct: 17 LKDGPLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMV--DIIN 73
Query: 61 AA---------FPLLKGVVATTDVVEACKDVNIAVMV 88
PL +VA +D+ D ++ + +
Sbjct: 74 NKHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFI 110
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 33.4 bits (76), Expect = 0.10
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+++TGA G +G L
Sbjct: 2 NIVITGAKGFVGKNLK 17
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 32.9 bits (76), Expect = 0.11
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIAR--GIMLG-----PDQPVILHMLDIEPAAEALNG 53
M +RV + GA G++G L+ G+ LG ++ E A G
Sbjct: 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAG-ELAGAGKTG 59
Query: 54 VKMEL-IDAAFPLLKGVV------ATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMS 104
V ++ +DA + T + + C+ +++G GF + G + +
Sbjct: 60 VTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFD-EAGKQAIRDAA 118
Query: 105 KNVSIYKA 112
+++I A
Sbjct: 119 ADIAIVFA 126
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 32.7 bits (75), Expect = 0.11
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 59
+ +RVLV GA G++ L+ +G +PV + + E E +++
Sbjct: 17 LYFQGMRVLVVGANGKVARYLLSELKNKG-----HEPVAMVR-NEEQGPELRERGASDIV 70
Query: 60 DAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKD 101
A D A ++ V G G ++
Sbjct: 71 VAN--------LEEDFSHAFASIDAVVFAAGSGPHTGADKTI 104
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 32.9 bits (76), Expect = 0.12
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 1 MAKNPL--RVLVTGAAGQIGYALV 22
M +N L R+L+TG AG IG L
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLA 24
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 32.9 bits (76), Expect = 0.13
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 7 RVLVTGAAGQIGYALVPMIA-RGIMLGPDQPVILHMLDI 44
+L+ G GQ+G+ L +A G ++ D D
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDF 40
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 32.5 bits (75), Expect = 0.16
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
M+ ++ VTG G +G +V
Sbjct: 1 MSL---KIAVTGGTGFLGQYVV 19
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 32.4 bits (74), Expect = 0.16
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 25/108 (23%)
Query: 7 RVLVTGAAGQIGYALVPM-IARGI-----------MLGPDQPVILH---MLDIEPAAEAL 51
++++ GA+G +G AL+ + RG + ++ + + + ++ E
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC 65
Query: 52 NGVKMELIDAAFPLLKG-------VVATTDVVEACKDVNIA--VMVGG 90
G +I A P + +++ K + +MVGG
Sbjct: 66 KGADA-VISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 32.5 bits (75), Expect = 0.16
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 RVLVTGAAGQIGYALV-PMIARGIMLGPDQPVI 38
R+LVTG AG IG V ++A P VI
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI 34
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 31.9 bits (72), Expect = 0.18
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGIMLGPDQPVIL--HMLDIEPAAEALNGVKMELIDAAF 63
++ + GA G+ G ++ RG + + + I + +N ++ ++ D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRG-----HEVTAIVRNAGKITQTHKDINILQKDIFDLTL 56
Query: 64 PLLKGVVATTDVVEACKD 81
L D D
Sbjct: 57 SDLSDQNVVVDAYGISPD 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.19
Identities = 36/229 (15%), Positives = 66/229 (28%), Gaps = 74/229 (32%)
Query: 31 LGPDQPVILH-M-------LDIEPAAEALNGVKMELIDAAFPL------LKGVVATTDVV 76
L P + V++ + + A + K + LK + V+
Sbjct: 147 LRPAKNVLIDGVLGSGKTWV----ALDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVL 199
Query: 77 EACKDVNIAVMVGGFPRKEGME----RKDVMSKNVSIY---KAQASAL--------EKHA 121
E + + + R + R + + K + L K
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 122 AP---NCKVLVV-ANPANTNAL------------ILKEFAP----SIPAKNITC----LT 157
+CK+L+ T+ L P S+ K + C L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 158 R--LDHN-RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 203
R L N R + I+E ++ ++ W N + VN +TT
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLA------TWDN-----WKHVNCDKLTT 357
Score = 29.4 bits (65), Expect = 2.1
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 199
IL F + N C D +++ +S+ ++ ++I D
Sbjct: 21 ILSVFEDAF-VDNFDCKDVQDMPKSI--LSKE------EIDHII--------MSKDAVSG 63
Query: 200 T-----VTTSKGEKPVREAVADD-----NWLNTEFITTVQQR 231
T SK E+ V++ V + +L + T +Q
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 32.1 bits (73), Expect = 0.19
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 27/106 (25%)
Query: 7 RVLVTGAAGQIGYALVPMIA---------------RGIMLGPD--QPVILHMLDIEPAAE 49
VL+ GA GQI ++ +A + P Q ++ +L+ +
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQ 84
Query: 50 ALNGVKMELIDAAFPLLKG---VVATTDVVEACKDVNIA--VMVGG 90
A+ G D + L G + V+ A K ++ + V
Sbjct: 85 AMQGQ-----DIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLS 125
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 31.8 bits (73), Expect = 0.23
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
M + RVLVTGA G +G A+
Sbjct: 1 MNR---RVLVTGATGLLGRAVH 19
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 32.2 bits (72), Expect = 0.26
Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 37/214 (17%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELI 59
M +++ + GA G ++L + + P + ++DI+ +
Sbjct: 1 MPS--VKIGIIGA-GSAVFSLR--LVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKY 55
Query: 60 DAAFPLLKGVVATTDVVEACKD---VNIAVMVGGFPRKEGMERKD--------------- 101
T ++ + D V MVGG E + +
Sbjct: 56 VEEVGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFN 115
Query: 102 -VMSKNVSIYKAQASALEKHA------APNCKVLVVANPANTNALILKEFAPSIPAKNIT 154
V Q A +P L ANP ++ I A
Sbjct: 116 MVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRT-VPIKAVGFC 174
Query: 155 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 188
+ + +I E+L + V + NH
Sbjct: 175 -----HGHYGVMEIVEKLGLEEEKVDWQVAGVNH 203
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 31.7 bits (73), Expect = 0.29
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
++L+TGA GQ+G +
Sbjct: 14 KILITGANGQLGREIQ 29
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 31.6 bits (72), Expect = 0.33
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 4 NPLRVLVTGAAGQIGYALVPM-IARGIML-----GPDQPVILHMLDIEPAAEALNGV 54
+PL V +TG+ G +G AL G + +P + PA++ L+G
Sbjct: 146 SPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGA 202
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 31.3 bits (72), Expect = 0.35
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
RV++TGA GQ+G L
Sbjct: 7 RVIITGANGQLGKQLQ 22
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.5 bits (72), Expect = 0.36
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 4 NPLRVLVTGAAGQIGYALV 22
+L+TG AG +G L
Sbjct: 9 ENQTILITGGAGFVGSNLA 27
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 31.4 bits (72), Expect = 0.38
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
R L+TGA+GQ+G L
Sbjct: 2 RTLITGASGQLGIELS 17
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 31.4 bits (72), Expect = 0.38
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 63 FPLLKGVVATTDVVEACKDVNIAVMV 88
L VVA DVV+A +D +I + V
Sbjct: 72 HKLPPNVVAVPDVVQAAEDADILIFV 97
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 31.1 bits (71), Expect = 0.49
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 RVLVTGAAGQIGYALV 22
++VTG AG IG +V
Sbjct: 48 MIIVTGGAGFIGSNIV 63
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 30.4 bits (69), Expect = 0.54
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 25/132 (18%)
Query: 7 RVLVTGAAGQIGYALVPM-IARGI-------------MLGPD--QPVILHMLDIEPAAEA 50
++ + GA GQ G + + G GP V+ +L +
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 51 LNGVKMELIDAAFPLLKGVVATTD------VVEACKDVNIA--VMVGGFPRKEGMERKDV 102
+ G +I T +V A K + V +
Sbjct: 65 VAGQDA-VIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPP 123
Query: 103 MSKNVSIYKAQA 114
+ V+ +
Sbjct: 124 RLQAVTDDHIRM 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.56
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 27/47 (57%)
Query: 105 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPA 150
K ++ K QAS LK +A S PA
Sbjct: 19 KQ-ALKKLQAS-------------------------LKLYADDSAPA 39
Score = 26.5 bits (57), Expect = 8.9
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 9/25 (36%)
Query: 229 QQRGAAIIKARKLSSALS--AASSA 251
Q +K KL ++L A SA
Sbjct: 20 QA-----LK--KLQASLKLYADDSA 37
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 30.4 bits (68), Expect = 0.60
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVP-MIARG 28
++ V GA G+ G A+V RG
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRG 24
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 30.3 bits (69), Expect = 0.74
Identities = 19/110 (17%), Positives = 28/110 (25%), Gaps = 38/110 (34%)
Query: 7 RVLVTGAAGQIGYALVPMIA------RGIMLGPDQPVILHMLDIEPA----------AEA 50
+ V GA G +G+ I I Q L L+ E A
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA 74
Query: 51 LNGV----------------KMELIDAAFPLLKGVVATTDVVEACKDVNI 84
L G+ E + +A + T AC +
Sbjct: 75 LRGLDGVIFSAGYYPSRPRRWQEEVASA------LGQTNPFYAACLQARV 118
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 30.0 bits (67), Expect = 0.77
Identities = 16/122 (13%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGIMLGPDQPVILHMLDIE--PAAEALNGVKMELIDAAF 63
+ + GAAGQI L ++ D + L+ ++ E ++ ++ +I+ +
Sbjct: 7 YITILGAAGQIAQXLTATLLTYT-----DMHITLYGRQLKTRIPPEIIDHERVTVIEGS- 60
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSK-NVSIYKAQASALEKHAA 122
+ +A + + + + +S+ N+ + A
Sbjct: 61 -----FQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGLSGEF 115
Query: 123 PN 124
P
Sbjct: 116 PV 117
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 30.2 bits (69), Expect = 0.83
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI 38
N + +LVTG AG IG V + + +I
Sbjct: 20 FQSNAMNILVTGGAGFIGSNFVHYMLQS---YETYKII 54
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 30.2 bits (68), Expect = 0.89
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 11/118 (9%)
Query: 2 AKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA 61
+ N VLVTGA+G+ G + + G + + + + + D
Sbjct: 1 SANLPTVLVTGASGRTGQIVYKKLKEG---SDKFVAKGLVRSAQGKEKIGGEADVFIGDI 57
Query: 62 AFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 119
+ A + ++ V++ K E+
Sbjct: 58 TDA--------DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQ 107
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor,
lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB:
3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Length = 307
Score = 29.9 bits (68), Expect = 0.97
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 8 VLVTGAAGQIGYA----LVPMIARGIMLGPDQPVILHM---LDIEPAAEAL-NGVKMELI 59
+ + + G I Y V M+ P PV LH+ E +A+ G +I
Sbjct: 44 LFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103
Query: 60 DA-AFPLLKGVVATTDVVEACKDVNIAV 86
DA + + T+ VV+ + ++V
Sbjct: 104 DASHHAFEENLELTSKVVKMAHNAGVSV 131
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 30.0 bits (68), Expect = 0.98
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
V+V G AG +G LV
Sbjct: 34 NVMVVGGAGFVGSNLV 49
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 29.9 bits (68), Expect = 1.0
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIAR--GIMLG-----PDQPVILHMLDIEPAAEALNG 53
+R+ V GA G++G L+ I R + L + G
Sbjct: 17 QGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDAS-ILIGSDFLG 75
Query: 54 VKMEL-IDAAFPLLKGVV------ATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMS 104
V++ ++AF +G++ A+ ++ ++G GF K + +
Sbjct: 76 VRITDDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFS-KTEEAQIADFA 134
Query: 105 KNVSIYKA 112
K +I K+
Sbjct: 135 KYTTIVKS 142
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 30.0 bits (68), Expect = 1.0
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
++N L++ +TGA G I +
Sbjct: 26 PSEN-LKISITGAGGFIASHIA 46
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 29.8 bits (68), Expect = 1.0
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++VTG AG IG +V ++ ++ V++ L +G E ++ A L+
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSES-----NEIVVIDNLS--------SG-NEEFVNEAARLV 48
Query: 67 KGVVATTDVVEACKDV 82
K +A D+ + K
Sbjct: 49 KADLAADDIKDYLKGA 64
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
fructose-1,6-bisphosphate aldolase, glycolytic pathway,
giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A*
3gb6_A*
Length = 323
Score = 29.9 bits (68), Expect = 1.0
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 8 VLVTGAAGQIGYA----LVPMIARGIMLGPDQPVILHM---LDIEPAAEAL-NGVKMELI 59
V++ + G + Y+ L + + PD P+ +H+ +E A+ G +I
Sbjct: 45 VILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMI 104
Query: 60 DA-AFPLLKGVVATTDVVEACKDVNIAV 86
DA P + V T +VV +++V
Sbjct: 105 DASHHPFDENVRITKEVVAYAHARSVSV 132
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 29.9 bits (68), Expect = 1.1
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 265 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLK-------VDEFSRAKMDATA 317
GTW MG S + L + T E G + LK + + +
Sbjct: 258 GTWSLMGFESQTPFTNDTALAANI--TNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDL 315
Query: 318 EELAEE 323
L
Sbjct: 316 PALIAA 321
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.9 bits (68), Expect = 1.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 8 VLVTGAAGQIGYALV 22
++VTG AG IG +V
Sbjct: 2 IIVTGGAGFIGSNIV 16
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 29.2 bits (66), Expect = 1.3
Identities = 4/24 (16%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 7 RVLVTGAAGQIGYALVPM-IARGI 29
++ + G+ G++G +L+
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDY 25
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A
{Escherichia coli} SCOP: c.1.10.2
Length = 286
Score = 29.5 bits (67), Expect = 1.3
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 12 GAAGQIGYALVPMIARGIMLGPDQPVILHM---LDIEPAAEAL-NGVKMELIDA-AFPLL 66
G I + + + P+ LH+ ++ + GV+ +ID FP
Sbjct: 52 GTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFA 111
Query: 67 KGVVATTDVVEACKDVNIAV 86
+ V VV+ C + +V
Sbjct: 112 ENVKLVKSVVDFCHSQDCSV 131
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 29.5 bits (67), Expect = 1.5
Identities = 16/125 (12%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIAR--GIMLG-----PDQPVILHMLDIEPAAEALNGVKM 56
+ +++ + GA+G++G L+ + L P + D GV +
Sbjct: 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ--DAGAFLGKQTGVAL 63
Query: 57 EL-IDAAFPLLKGVV------ATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMSKNV 107
I+ ++ T ++A ++ +++G GF + + + +
Sbjct: 64 TDDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFS-EPQKAQLRAAGEKI 122
Query: 108 SIYKA 112
++ +
Sbjct: 123 ALVFS 127
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.4 bits (67), Expect = 1.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
R++VTG AG IG LV
Sbjct: 2 RIVVTGGAGFIGSHLV 17
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 29.2 bits (65), Expect = 1.6
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 69 VVATTDVVEACK-DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
V+ D +E D +I V VG R + + + + V + SA
Sbjct: 187 VIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSA 235
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 29.3 bits (65), Expect = 1.8
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGIMLGPDQPVIL--HMLDIEPAAEALNGVKMELIDAA- 62
L+ G G IG +L + GP + + +N V+ ++ D
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDD 62
Query: 63 -FPLLKGVVATTDVV 76
L + T V
Sbjct: 63 SQAKLSPLTDVTHVF 77
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 29.0 bits (66), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI 38
++L+TG AG IG A+V R I+ V+
Sbjct: 2 KILITGGAGFIGSAVV----RHIIKNTQDTVV 29
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 28.7 bits (65), Expect = 2.2
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 124 NCKVLVVA-NPANTNAL-ILKEFAPSIP 149
K +++A N + A I++E A +IP
Sbjct: 69 EVKAIIIACNTISAIAKDIVQEIAKAIP 96
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.20A {Coccidioides immitis}
Length = 306
Score = 28.8 bits (65), Expect = 2.5
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 12 GAAGQIGYALVPMIARGIMLGPDQPVILHM---LDIEPAAEALNGVKMELIDAAF----- 63
A LV A P+ LH+ D E A + + E + F
Sbjct: 61 WAIQYADSLLVRTAASACR-AASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDSIMV 119
Query: 64 -----PLLKGVVATTDVVEACKDVNIAV 86
+ + T ++V C IA
Sbjct: 120 DMSHFSKEENLRLTRELVAYCNARGIAT 147
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 28.9 bits (65), Expect = 2.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 6 LRVLVTGAAGQIGYALV 22
+RVL+ G G IG L
Sbjct: 1 MRVLILGVNGFIGNHLT 17
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 28.3 bits (64), Expect = 2.8
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 6 LRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME-LIDAAFP 64
+RV V GA G++G +V +A D + LD L E +ID P
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAGDPLSLLTDGNTEVVIDFTHP 55
Query: 65 LLKGVVATTDVVEACKDVNIAVMVG--GF--PRKEGMERKDVMSKNVSIYKA 112
+E D I +VG GF R + +E V N S+ A
Sbjct: 56 -----DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIA 102
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 28.7 bits (64), Expect = 3.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 110 YKAQASALEKHAAPNCKVLVVANPAN 135
++ S L+K P K+ NP+N
Sbjct: 231 WQYPDSELDKLKDPAIKIFFCVNPSN 256
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 28.4 bits (64), Expect = 3.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
M V VTGA+G IG LV
Sbjct: 1 MGSQSETVCVTGASGFIGSWLV 22
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 28.5 bits (63), Expect = 3.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
+ RVL+ GA G IG +
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVA 27
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 27.9 bits (63), Expect = 3.5
Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 63
+ ++ + G +G++G + + + + V+ ++ ++ + V ID +
Sbjct: 11 HHMKYGIVGYSGRMGQEIQKVFSE----KGHELVLKVDVNGVEELDSPDVV----IDFSS 62
Query: 64 PLLKGVVATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMSKNVSIYKA 112
P A V+ CK +++G +E ++ +SK V + +A
Sbjct: 63 P-----EALPKTVDLCKKYRAGLVLGTTALK-EEHLQMLRELSKEVPVVQA 107
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 28.7 bits (64), Expect = 3.6
Identities = 12/141 (8%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 114 ASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 173
L++ + + + L+ E A ++ ++ R ++ +
Sbjct: 330 KEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLED 389
Query: 174 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 233
+ +D ++ G+ + P ++ + KP + + + + +R
Sbjct: 390 LLQADF--ALVLGDPTEEA-PILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTD 446
Query: 234 AIIKARKLSSALSAASSACDH 254
+ + L ++ +
Sbjct: 447 KMALFAPYRAPLMKWAAIHEV 467
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 28.2 bits (64), Expect = 4.0
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 109 IYKAQASALEKHAAPNCKVLVVANPAN-TNALILKEFAPSIPAKNITCLT 157
+LE+ + K +++ +P+N +I +E ++
Sbjct: 139 FCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIIS 188
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.9 bits (62), Expect = 4.1
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 1 MAKNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID 60
M R+L+ GA G IG +A+ + +L + +
Sbjct: 1 MGSRS-RILLIGATGYIGRH----VAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKA 55
Query: 61 AAFPLLKGVVATTD-VVEACKDVNIAVMVGGFPRKEG 96
+ ++ G + +VEA K+V++ + G + E
Sbjct: 56 SGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIES 92
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 28.3 bits (63), Expect = 4.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
MA+ + V GA G+ G +L+
Sbjct: 1 MAQQKKTIAVVGATGRQGASLI 22
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 28.2 bits (63), Expect = 4.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 2 AKNPLRVLVTGAAGQIGYALV 22
+ RV+V G G G+A
Sbjct: 8 HHHGSRVMVIGGDGYCGWATA 28
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 27.9 bits (63), Expect = 4.7
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 3 KNPLRVLVTGAAGQIGYALVPMIARGIMLGPDQPVI 38
++VTG AG IG V + PD V
Sbjct: 2 SQFKNIIVTGGAGFIGSNFVHYVYNN---HPDVHVT 34
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 27.7 bits (62), Expect = 4.7
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
+V+V G G +G A++ + G V+ +D+ +A + L+
Sbjct: 5 KVIVYGGKGALGSAILEFFKKN---GYT--VLN--IDLSANDQA----------DSNILV 47
Query: 67 KGVVATTDVVEACKDVNIAVMVGG 90
G T+ ++ + + + G
Sbjct: 48 DGNKNWTEQEQSILEQTASSLQGS 71
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 27.9 bits (63), Expect = 5.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 7 RVLVTGAAGQIG 18
RVLVTG AG IG
Sbjct: 2 RVLVTGGAGFIG 13
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.9 bits (63), Expect = 5.4
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 4 NPLRVLVTGAAGQIG 18
+ +R+L+TG AG +G
Sbjct: 19 SHMRILITGGAGCLG 33
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 27.2 bits (61), Expect = 5.6
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 4 NPLRVLVTGAAGQIGYALVPMIARG 28
N +++L+ GA+G +G A+ + +
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEKK 26
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 27.8 bits (62), Expect = 5.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
+ +VL+ G G IG+ L
Sbjct: 20 GSMKAKKVLILGVNGFIGHHLS 41
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 27.8 bits (63), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVI 38
++LVTG G IG + I + PD VI
Sbjct: 5 KLLVTGGMGFIGSNFIRYI---LEKHPDWEVI 33
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.6 bits (62), Expect = 6.1
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVP-MIARG 28
++L+TG G +G L +++G
Sbjct: 3 KLLITGGCGFLGSNLASFALSQG 25
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 27.6 bits (62), Expect = 6.4
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 7 RVLVTGAAGQIGYALVPM-IARGI-------MLGPDQPVILHMLDIEPAAEALNGVKMEL 58
RV VTG G +G ++ + G + + + ++ A+E L+ +L
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 59 ID 60
+
Sbjct: 63 SN 64
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 27.5 bits (62), Expect = 6.7
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 110 YKAQASALEKHAAPNCKVLVVANPAN-TNALILKEF 144
+ L + P K++ + N N T A++ + +
Sbjct: 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTY 175
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG;
2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB:
1ib4_A*
Length = 339
Score = 27.4 bits (61), Expect = 6.9
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 242 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVK 301
+S+ S + ++C I + P GT + + +DG++ I G +F G V
Sbjct: 12 ASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGET-TFGYKEWSGPLISVS 70
Query: 302 GLKV 305
G +
Sbjct: 71 GSDL 74
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 27.2 bits (60), Expect = 7.0
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 1 MAKNPLRVLVTGAAGQIGYALV 22
M K RVL+ G G IG +V
Sbjct: 1 MDK-KSRVLIVGGTGYIGKRIV 21
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 7.1
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
++++ G G IG + R + I + + ++ E ++
Sbjct: 6 KIIIYGGTGYIGKF----MVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII 61
Query: 67 KGVVATTD-VVEACKDVNIAV 86
+G + + +V K V+I +
Sbjct: 62 EGEMEEHEKMVSVLKQVDIVI 82
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural
genomics, joint center for structural genomics, JCSG;
HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Length = 114
Score = 26.2 bits (58), Expect = 7.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 31 LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 80
L PD P++L ++D E ++ ID + + T V K
Sbjct: 70 LSPDLPIVLEIVDEEERINLF----LKEID---NIDFDGLVFTADVNVVK 112
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.1 bits (61), Expect = 7.8
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 65
LVTG+ IG A IA + G + V+++ E E + ++ + DA
Sbjct: 12 TALVTGSTAGIGKA----IATSLVAEGAN--VLINGRREENVNETIKEIRAQYPDAILQP 65
Query: 66 LKGVVATTD----VVEACKDVNIAV-MVGGFPRKEGMERKD 101
+ + T V+E V+I + +G F E + D
Sbjct: 66 VVADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPD 106
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 27.3 bits (61), Expect = 7.9
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 110 YKAQASALEKHAAPNCKVLVVANPAN-TNALI----LKEFAPSIPAKNITCLT 157
K + ++ +NP N T + L+ ++ +
Sbjct: 168 EKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 27.2 bits (61), Expect = 7.9
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+++TGA G +G +
Sbjct: 2 NIMLTGATGHLGTHIT 17
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 27.2 bits (60), Expect = 8.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
++L+ G G IG +V
Sbjct: 4 KILILGPTGAIGRHIV 19
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 27.4 bits (61), Expect = 8.6
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 1 MAKNPLRVLVTGAAGQIG-YALVPMIARGIMLGPDQPVIL 39
VLVTG AG IG + +V +I G V+
Sbjct: 7 SESTSKIVLVTGGAGYIGSHTVVELIENGY-----DCVVA 41
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 4 NPLRVLVTGAAGQIG 18
+ +RVLV G AG IG
Sbjct: 1 SHMRVLVCGGAGYIG 15
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 27.1 bits (61), Expect = 9.3
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 57 ELIDAAFPLLKGVVATTDV------VEACKDVNIAVM 87
++DAA LK V++T V ++ K I V
Sbjct: 68 RILDAAGANLK-VISTMSVGIDHLALDEIKKRGIRVG 103
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 26.9 bits (60), Expect = 9.3
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 66
RVLV G G +G V V +D+ EA V +++ D+
Sbjct: 9 RVLVYGGRGALGSRCVQAFRAR---NWW--VAS--IDVVENEEASASVIVKMTDSFTEQA 61
Query: 67 KGVVATTDVVEACKD----VNIAVMVGGFPRKEGMERKD---VMSKNV 107
V A + + + +A G K K+ + +++
Sbjct: 62 DQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSI 109
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 26.9 bits (60), Expect = 9.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+LV G +G +G +V
Sbjct: 24 NILVLGGSGALGAEVV 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,069,231
Number of extensions: 312270
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 163
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)