BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019991
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT
TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRS
CIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEI
CASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILR
VQMQLESSPYSLLEGSMQLNLDLTVMEKLQIYLLFKLLYLNMMHIHRMCCHHFRGRLILD
LKNAIFFLTEFFCHQMIVSTFMCCETKGCDAP

High Scoring Gene Products

Symbol, full name Information P value
AT5G10460 protein from Arabidopsis thaliana 2.0e-86
SPO_3151
HAD-superfamily subfamily IIA hydrolase, TIGR01459
protein from Ruegeria pomeroyi DSS-3 6.5e-11

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019991
        (332 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142454 - symbol:AT5G10460 "AT5G10460" species...   864  2.0e-86   1
TIGR_CMR|SPO_3151 - symbol:SPO_3151 "HAD-superfamily subf...   173  6.5e-11   1


>TAIR|locus:2142454 [details] [associations]
            symbol:AT5G10460 "AT5G10460" species:3702 "Arabidopsis
            thaliana" [GO:0016787 "hydrolase activity" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=IDA] InterPro:IPR006357
            Pfam:PF13344 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            GO:GO:0016787 eggNOG:COG0647 TIGRFAMs:TIGR01460 EMBL:BT015033
            IPI:IPI00539262 RefSeq:NP_196608.2 UniGene:At.32374
            UniGene:At.32376 ProteinModelPortal:Q6DBI9 SMR:Q6DBI9 STRING:Q6DBI9
            PaxDb:Q6DBI9 PRIDE:Q6DBI9 EnsemblPlants:AT5G10460.1 GeneID:830910
            KEGG:ath:AT5G10460 OMA:HDIKGAN ProtClustDB:CLSN2681040
            Genevestigator:Q6DBI9 InterPro:IPR006356 TIGRFAMs:TIGR01459
            Uniprot:Q6DBI9
        Length = 306

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 163/217 (75%), Positives = 187/217 (86%)

Query:    14 LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
             L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK+V+ISNSSR
Sbjct:     7 LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAKIVIISNSSR 66

Query:    74 RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAIS 133
             RASTT++KLK LGFDPS F GAITSGELTHQ L RRDD WFAALGR CIH+TW+DRGAIS
Sbjct:    67 RASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQRRDDPWFAALGRRCIHITWNDRGAIS 126

Query:   134 LEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANP 193
             LEGL L VVENVEEADF+LAHGTE +GLPSG V P ++ +LEKILE  A++ +PM+VANP
Sbjct:   127 LEGLDLNVVENVEEADFVLAHGTEALGLPSGSVSPRTIDELEKILEKSAARGLPMIVANP 186

Query:   194 DYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKL 230
             DYVTVEA    +MPGTLASK+E+LGGEV+ MGKP K+
Sbjct:   187 DYVTVEANVFHIMPGTLASKYEELGGEVKSMGKPHKM 223


>TIGR_CMR|SPO_3151 [details] [associations]
            symbol:SPO_3151 "HAD-superfamily subfamily IIA hydrolase,
            TIGR01459" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152
            "metabolic process" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=ISS] InterPro:IPR006357 Pfam:PF13344 EMBL:CP000031
            GenomeReviews:CP000031_GR Gene3D:3.40.50.1000 InterPro:IPR023214
            SUPFAM:SSF56784 GO:GO:0016787 RefSeq:YP_168354.1
            ProteinModelPortal:Q5LNQ2 DNASU:3194029 GeneID:3194029
            KEGG:sil:SPO3151 PATRIC:23379747 HOGENOM:HOG000145430 OMA:DVWGVLH
            ProtClustDB:CLSK934070 Uniprot:Q5LNQ2
        Length = 310

 Score = 173 (66.0 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 57/226 (25%), Positives = 101/226 (44%)

Query:     3 AKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG 62
             A  +V   DP + Q +  L  I+E  R++A  +D +G +H+G   YP A++ L+     G
Sbjct:     9 ALATVSKPDPDMTQIITALAEISE--RYRALFVDLWGCVHNGVTAYPEAVAALQAYRAAG 66

Query:    63 AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCI 122
               +V+++NS +  +    +L         +    TSG+     + R       A+G+   
Sbjct:    67 GIVVLVTNSPKPRAGVATQLSQFKVPQDAYDTIATSGDSARSAMFR------GAVGQKVY 120

Query:   123 HMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA 182
              M   +R A   E L  K++++  E   +     EG+ +  G   PM+   + +   + A
Sbjct:   121 FMGEWERDAGFFEPL--KLLDSPVEITRVPLQEAEGI-VCCGPFDPMADPAVNRPDFLYA 177

Query:   183 SKK-IPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKP 227
               K + ++ ANPD V           G LA  + ++GGE  + GKP
Sbjct:   178 KTKGMKLLCANPDIVVDRGEIREWCAGALARLYTEMGGESLYFGKP 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       319   0.00084  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  227 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.71u 0.11s 25.82t   Elapsed:  00:00:01
  Total cpu time:  25.71u 0.11s 25.82t   Elapsed:  00:00:01
  Start:  Fri May 10 19:13:00 2013   End:  Fri May 10 19:13:01 2013

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