Query 019991
Match_columns 332
No_of_seqs 211 out of 2304
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0647 NagD Predicted sugar p 100.0 2.3E-44 5E-49 333.6 23.5 224 22-266 2-234 (269)
2 KOG2882 p-Nitrophenyl phosphat 100.0 2.8E-40 6.2E-45 304.5 22.8 232 16-266 10-268 (306)
3 PRK10444 UMP phosphatase; Prov 100.0 1.9E-37 4.2E-42 286.6 23.2 213 30-267 1-219 (248)
4 TIGR01457 HAD-SF-IIA-hyp2 HAD- 100.0 3.8E-37 8.2E-42 284.8 24.2 218 30-268 1-224 (249)
5 TIGR01452 PGP_euk phosphoglyco 100.0 5.1E-36 1.1E-40 281.5 24.1 222 29-267 1-247 (279)
6 PLN02645 phosphoglycolate phos 100.0 6.6E-36 1.4E-40 284.9 24.2 237 13-267 13-275 (311)
7 TIGR01459 HAD-SF-IIA-hyp4 HAD- 100.0 1.4E-35 3.1E-40 272.8 25.3 234 21-266 1-240 (242)
8 TIGR01460 HAD-SF-IIA Haloacid 100.0 1.1E-33 2.4E-38 259.6 22.6 216 33-267 1-234 (236)
9 TIGR01458 HAD-SF-IIA-hyp3 HAD- 100.0 3.1E-33 6.7E-38 259.8 24.1 213 30-268 1-225 (257)
10 TIGR01456 CECR5 HAD-superfamil 100.0 3.4E-32 7.4E-37 260.5 19.8 216 32-267 2-291 (321)
11 KOG3040 Predicted sugar phosph 100.0 2.2E-30 4.7E-35 226.8 20.6 214 29-267 6-226 (262)
12 PF13344 Hydrolase_6: Haloacid 99.8 2E-20 4.4E-25 150.0 8.9 100 33-140 1-101 (101)
13 KOG1618 Predicted phosphatase 99.8 2.9E-19 6.4E-24 165.6 16.0 221 32-281 37-346 (389)
14 TIGR02252 DREG-2 REG-2-like, H 99.6 1.4E-15 3.1E-20 135.4 9.3 92 170-265 106-203 (203)
15 TIGR02253 CTE7 HAD superfamily 99.6 2.4E-15 5.3E-20 135.4 10.5 97 170-269 95-197 (221)
16 PLN03243 haloacid dehalogenase 99.6 6.7E-16 1.5E-20 143.9 5.6 93 171-267 111-209 (260)
17 PLN02575 haloacid dehalogenase 99.6 8.6E-16 1.9E-20 149.4 5.7 95 170-268 217-317 (381)
18 COG0637 Predicted phosphatase/ 99.6 3.4E-15 7.4E-20 135.8 7.2 97 170-270 87-189 (221)
19 PLN02770 haloacid dehalogenase 99.6 1.3E-15 2.7E-20 140.8 4.2 95 170-268 109-209 (248)
20 PRK11587 putative phosphatase; 99.6 1.9E-15 4.1E-20 136.7 4.3 94 170-268 84-183 (218)
21 PRK10748 flavin mononucleotide 99.6 8.8E-15 1.9E-19 134.3 8.8 92 170-270 114-211 (238)
22 TIGR03351 PhnX-like phosphonat 99.5 7.6E-15 1.6E-19 132.4 6.9 95 170-268 88-192 (220)
23 TIGR01422 phosphonatase phosph 99.5 7.9E-15 1.7E-19 135.4 6.5 94 170-267 100-201 (253)
24 PRK13226 phosphoglycolate phos 99.5 8.2E-15 1.8E-19 133.7 6.2 93 171-267 97-195 (229)
25 PRK09449 dUMP phosphatase; Pro 99.5 9.8E-15 2.1E-19 132.0 6.6 96 170-269 96-198 (224)
26 PRK13288 pyrophosphatase PpaX; 99.5 7.8E-15 1.7E-19 132.0 5.1 95 170-268 83-183 (214)
27 PRK10826 2-deoxyglucose-6-phos 99.5 2.3E-14 5E-19 129.7 7.1 97 170-270 93-195 (222)
28 TIGR01656 Histidinol-ppas hist 99.5 5.1E-13 1.1E-17 113.8 14.7 44 224-268 99-146 (147)
29 PRK13478 phosphonoacetaldehyde 99.5 2E-14 4.4E-19 134.0 6.2 95 170-268 102-204 (267)
30 COG1011 Predicted hydrolase (H 99.5 2.9E-14 6.2E-19 128.7 6.8 100 170-273 100-205 (229)
31 PRK10725 fructose-1-P/6-phosph 99.5 1.5E-14 3.2E-19 127.1 4.5 89 175-268 93-187 (188)
32 TIGR02247 HAD-1A3-hyp Epoxide 99.5 6.4E-14 1.4E-18 125.6 8.6 99 170-270 95-199 (211)
33 PLN02940 riboflavin kinase 99.5 9.5E-14 2.1E-18 136.2 9.4 95 170-268 94-195 (382)
34 TIGR02254 YjjG/YfnB HAD superf 99.5 1E-13 2.3E-18 124.7 8.6 94 171-268 99-199 (224)
35 TIGR01990 bPGM beta-phosphoglu 99.5 2.1E-13 4.6E-18 119.2 10.3 91 170-266 88-184 (185)
36 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 5.7E-14 1.2E-18 122.8 5.5 91 170-266 89-185 (185)
37 TIGR01449 PGP_bact 2-phosphogl 99.5 6.4E-14 1.4E-18 125.3 6.0 94 170-267 86-185 (213)
38 COG0546 Gph Predicted phosphat 99.5 4.7E-14 1E-18 128.1 5.0 97 169-269 89-191 (220)
39 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 1.2E-12 2.7E-17 108.9 12.8 45 224-268 83-132 (132)
40 PRK14988 GMP/IMP nucleotidase; 99.5 1.2E-13 2.7E-18 125.8 7.3 92 170-265 94-191 (224)
41 PRK10563 6-phosphogluconate ph 99.5 1.1E-13 2.5E-18 124.8 6.9 90 171-267 90-186 (221)
42 TIGR01454 AHBA_synth_RP 3-amin 99.4 1.1E-13 2.4E-18 123.7 5.6 94 170-267 76-175 (205)
43 PRK13223 phosphoglycolate phos 99.4 1.4E-13 3.1E-18 129.0 6.0 94 170-267 102-201 (272)
44 PLN02779 haloacid dehalogenase 99.4 1.3E-12 2.9E-17 123.3 11.1 95 170-268 145-247 (286)
45 KOG3085 Predicted hydrolase (H 99.4 2.9E-12 6.3E-17 116.9 12.5 94 172-269 116-215 (237)
46 PRK06769 hypothetical protein; 99.4 4.9E-12 1.1E-16 110.8 13.4 45 223-268 90-138 (173)
47 PRK13222 phosphoglycolate phos 99.4 4.4E-13 9.5E-18 120.9 6.6 94 170-267 94-193 (226)
48 TIGR01993 Pyr-5-nucltdase pyri 99.4 2.1E-13 4.6E-18 119.7 4.0 91 170-266 85-184 (184)
49 cd01427 HAD_like Haloacid deha 99.4 1.2E-11 2.5E-16 100.9 12.1 126 32-266 1-139 (139)
50 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 1.3E-11 2.8E-16 107.6 12.7 46 28-73 11-69 (166)
51 TIGR00213 GmhB_yaeD D,D-heptos 99.3 3.2E-11 7E-16 105.7 14.7 46 222-268 102-152 (176)
52 PRK13225 phosphoglycolate phos 99.3 2.1E-12 4.5E-17 121.2 5.6 92 170-268 143-240 (273)
53 PLN02919 haloacid dehalogenase 99.3 3.3E-12 7.1E-17 139.4 7.7 96 170-269 162-264 (1057)
54 PRK08942 D,D-heptose 1,7-bisph 99.3 3.3E-11 7.2E-16 105.9 12.3 45 223-268 100-148 (181)
55 TIGR01428 HAD_type_II 2-haloal 99.3 5.6E-12 1.2E-16 111.9 6.7 97 170-270 93-195 (198)
56 PRK06698 bifunctional 5'-methy 99.2 7.2E-12 1.6E-16 125.7 4.4 94 170-268 331-428 (459)
57 TIGR01549 HAD-SF-IA-v1 haloaci 99.2 1.5E-11 3.3E-16 104.6 5.5 83 172-260 67-154 (154)
58 TIGR01548 HAD-SF-IA-hyp1 haloa 99.2 3E-11 6.6E-16 107.4 7.5 81 174-259 111-197 (197)
59 PHA02597 30.2 hypothetical pro 99.2 1.4E-10 3E-15 102.9 11.7 95 170-271 75-178 (197)
60 PF13242 Hydrolase_like: HAD-h 99.1 1.2E-10 2.6E-15 88.0 6.1 46 223-268 1-50 (75)
61 PRK09456 ?-D-glucose-1-phospha 99.1 1.5E-10 3.3E-15 103.1 7.7 94 171-268 86-186 (199)
62 KOG2914 Predicted haloacid-hal 99.1 2.2E-10 4.7E-15 104.1 7.2 94 172-268 95-197 (222)
63 PRK05446 imidazole glycerol-ph 99.1 3.3E-09 7.1E-14 102.9 15.1 46 223-269 101-150 (354)
64 PF13419 HAD_2: Haloacid dehal 99.0 1.6E-10 3.4E-15 98.6 4.5 92 171-266 79-176 (176)
65 PLN02811 hydrolase 99.0 5.8E-10 1.3E-14 101.0 7.0 96 170-268 79-185 (220)
66 TIGR01509 HAD-SF-IA-v3 haloaci 99.0 5.3E-10 1.1E-14 97.1 6.0 91 171-266 87-183 (183)
67 TIGR01672 AphA HAD superfamily 99.0 2.1E-09 4.6E-14 98.8 9.4 94 170-267 115-211 (237)
68 TIGR01668 YqeG_hyp_ppase HAD s 99.0 3.9E-09 8.5E-14 92.2 9.8 88 169-268 43-137 (170)
69 TIGR01261 hisB_Nterm histidino 98.9 2.6E-09 5.7E-14 92.7 5.7 100 170-270 30-150 (161)
70 TIGR01691 enolase-ppase 2,3-di 98.9 5.2E-09 1.1E-13 95.3 7.7 100 169-270 95-199 (220)
71 COG0241 HisB Histidinol phosph 98.8 1.9E-07 4.2E-12 82.1 14.3 49 223-272 102-154 (181)
72 TIGR00338 serB phosphoserine p 98.8 4.2E-09 9.1E-14 94.8 3.7 95 171-270 87-197 (219)
73 COG2179 Predicted hydrolase of 98.8 1.5E-08 3.3E-13 87.0 6.6 87 172-270 49-141 (175)
74 TIGR01681 HAD-SF-IIIC HAD-supe 98.6 7.8E-08 1.7E-12 80.1 6.9 55 31-86 1-68 (128)
75 PRK10530 pyridoxal phosphate ( 98.6 6.5E-06 1.4E-10 76.3 19.5 60 28-89 1-61 (272)
76 TIGR01684 viral_ppase viral ph 98.6 5.8E-08 1.3E-12 91.2 5.7 73 29-104 125-201 (301)
77 TIGR01685 MDP-1 magnesium-depe 98.5 9E-08 2E-12 84.1 5.1 102 171-273 47-163 (174)
78 PLN02954 phosphoserine phospha 98.5 6.2E-07 1.4E-11 80.9 10.3 92 171-266 86-195 (224)
79 PHA02530 pseT polynucleotide k 98.5 2.5E-07 5.4E-12 87.4 7.5 96 168-267 186-296 (300)
80 KOG3109 Haloacid dehalogenase- 98.5 2.5E-07 5.4E-12 82.8 6.9 94 172-270 103-208 (244)
81 PHA03398 viral phosphatase sup 98.4 2E-07 4.3E-12 87.7 5.1 74 29-105 127-204 (303)
82 TIGR01493 HAD-SF-IA-v2 Haloaci 98.4 1.8E-07 3.9E-12 81.1 3.0 80 170-259 91-175 (175)
83 TIGR01663 PNK-3'Pase polynucle 98.4 3.5E-06 7.7E-11 85.7 12.1 50 22-73 162-224 (526)
84 TIGR01670 YrbI-phosphatas 3-de 98.4 1.4E-06 3E-11 74.9 7.8 100 30-139 1-113 (154)
85 TIGR01668 YqeG_hyp_ppase HAD s 98.4 2.9E-06 6.3E-11 74.0 9.8 94 28-128 23-118 (170)
86 TIGR02726 phenyl_P_delta pheny 98.3 1.3E-06 2.9E-11 76.4 7.0 104 29-140 6-120 (169)
87 PF09419 PGP_phosphatase: Mito 98.2 7.6E-06 1.6E-10 71.4 9.9 94 167-268 57-165 (168)
88 TIGR01685 MDP-1 magnesium-depe 98.2 3.7E-06 8E-11 73.9 6.0 68 30-100 2-106 (174)
89 PRK11133 serB phosphoserine ph 98.2 5E-06 1.1E-10 80.0 7.4 96 171-268 183-291 (322)
90 PRK09484 3-deoxy-D-manno-octul 98.1 6.6E-06 1.4E-10 72.6 7.2 109 21-139 14-133 (183)
91 PRK11009 aphA acid phosphatase 98.1 5.7E-06 1.2E-10 76.2 6.6 94 169-268 114-212 (237)
92 PRK11009 aphA acid phosphatase 98.1 1.2E-05 2.6E-10 74.1 8.5 67 32-99 65-170 (237)
93 PHA02530 pseT polynucleotide k 98.1 8.3E-06 1.8E-10 77.0 7.5 77 30-110 158-248 (300)
94 PRK00192 mannosyl-3-phosphogly 98.0 1.2E-05 2.5E-10 75.3 6.9 61 28-90 2-63 (273)
95 COG1778 Low specificity phosph 98.0 1.4E-05 3.1E-10 68.2 6.3 109 23-141 3-122 (170)
96 TIGR02461 osmo_MPG_phos mannos 98.0 1.5E-05 3.2E-10 72.8 6.8 56 32-89 1-56 (225)
97 TIGR01261 hisB_Nterm histidino 98.0 1.7E-05 3.6E-10 68.8 6.5 58 31-88 2-84 (161)
98 TIGR02244 HAD-IG-Ncltidse HAD 98.0 6.7E-05 1.4E-09 72.6 11.1 37 38-74 168-212 (343)
99 TIGR01485 SPP_plant-cyano sucr 98.0 0.00037 8.1E-09 64.2 15.6 57 32-90 3-63 (249)
100 PTZ00445 p36-lilke protein; Pr 97.9 0.00015 3.3E-09 65.2 12.2 48 223-271 154-209 (219)
101 PRK01158 phosphoglycolate phos 97.9 2.1E-05 4.6E-10 71.1 6.8 60 28-89 1-61 (230)
102 TIGR01533 lipo_e_P4 5'-nucleot 97.9 2.6E-05 5.7E-10 73.0 7.5 69 29-97 74-170 (266)
103 TIGR01681 HAD-SF-IIIC HAD-supe 97.9 3.8E-05 8.2E-10 63.9 6.9 81 170-258 30-126 (128)
104 TIGR01689 EcbF-BcbF capsule bi 97.9 4E-05 8.6E-10 63.8 6.7 42 31-72 2-50 (126)
105 TIGR01686 FkbH FkbH-like domai 97.9 1.6E-05 3.4E-10 76.4 4.7 66 29-97 2-83 (320)
106 smart00577 CPDc catalytic doma 97.8 4.1E-05 8.9E-10 65.2 5.7 70 30-102 2-98 (148)
107 TIGR02726 phenyl_P_delta pheny 97.8 2.4E-05 5.2E-10 68.5 4.0 82 177-271 42-129 (169)
108 TIGR02471 sucr_syn_bact_C sucr 97.8 0.00085 1.8E-08 61.2 14.5 55 32-89 1-55 (236)
109 TIGR01487 SPP-like sucrose-pho 97.8 5.5E-05 1.2E-09 68.0 6.5 57 30-88 1-58 (215)
110 PRK10513 sugar phosphate phosp 97.7 6.3E-05 1.4E-09 69.8 6.6 60 28-89 1-61 (270)
111 PRK03669 mannosyl-3-phosphogly 97.7 6.7E-05 1.5E-09 70.1 6.8 58 29-88 6-64 (271)
112 smart00775 LNS2 LNS2 domain. T 97.7 7.3E-05 1.6E-09 64.5 6.1 42 32-73 1-54 (157)
113 PRK12702 mannosyl-3-phosphogly 97.7 8.5E-05 1.8E-09 70.2 6.9 59 30-90 1-60 (302)
114 TIGR01486 HAD-SF-IIB-MPGP mann 97.7 7.7E-05 1.7E-09 69.0 6.5 54 33-88 2-56 (256)
115 COG2179 Predicted hydrolase of 97.7 0.00028 6E-09 61.0 8.8 98 20-126 19-118 (175)
116 TIGR02463 MPGP_rel mannosyl-3- 97.7 9E-05 2E-09 66.7 6.3 54 33-88 2-56 (221)
117 PRK10976 putative hydrolase; P 97.7 0.0001 2.2E-09 68.3 6.8 58 30-89 2-60 (266)
118 COG0561 Cof Predicted hydrolas 97.6 0.00012 2.7E-09 67.8 6.7 60 28-89 1-61 (264)
119 PRK15126 thiamin pyrimidine py 97.6 0.00013 2.9E-09 67.9 6.9 58 30-89 2-60 (272)
120 smart00577 CPDc catalytic doma 97.6 9.3E-06 2E-10 69.2 -1.1 86 170-263 46-138 (148)
121 TIGR01686 FkbH FkbH-like domai 97.6 0.00018 3.9E-09 69.1 7.1 85 170-262 32-125 (320)
122 PTZ00174 phosphomannomutase; P 97.5 0.00018 3.8E-09 66.4 6.4 54 28-83 3-57 (247)
123 TIGR01482 SPP-subfamily Sucros 97.5 0.00017 3.8E-09 64.8 5.8 54 33-88 1-55 (225)
124 TIGR01670 YrbI-phosphatas 3-de 97.5 0.00062 1.3E-08 58.3 8.7 79 177-269 36-120 (154)
125 TIGR00099 Cof-subfamily Cof su 97.5 0.00026 5.7E-09 65.2 6.7 55 32-88 1-56 (256)
126 PF00702 Hydrolase: haloacid d 97.4 6.3E-05 1.4E-09 66.5 2.0 80 168-260 126-215 (215)
127 PRK14502 bifunctional mannosyl 97.4 0.00029 6.3E-09 73.4 6.8 83 3-88 389-473 (694)
128 PRK09552 mtnX 2-hydroxy-3-keto 97.4 8.2E-05 1.8E-09 67.2 2.2 89 171-264 76-184 (219)
129 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.4 0.00011 2.3E-09 64.8 2.6 93 171-267 82-190 (201)
130 PLN02887 hydrolase family prot 97.3 0.00066 1.4E-08 70.2 7.9 65 20-88 300-365 (580)
131 PRK09484 3-deoxy-D-manno-octul 97.3 0.00041 8.9E-09 61.2 5.2 79 176-267 55-138 (183)
132 PF09419 PGP_phosphatase: Mito 97.3 0.00081 1.8E-08 58.7 6.9 63 28-90 39-110 (168)
133 TIGR01489 DKMTPPase-SF 2,3-dik 97.2 0.0003 6.6E-09 61.1 3.5 86 172-261 75-183 (188)
134 PF08645 PNK3P: Polynucleotide 97.2 0.00072 1.6E-08 58.5 5.7 41 31-71 1-54 (159)
135 PF08282 Hydrolase_3: haloacid 97.2 0.00068 1.5E-08 60.9 5.8 54 33-88 1-55 (254)
136 PF03767 Acid_phosphat_B: HAD 97.2 0.00031 6.8E-09 64.4 3.5 62 29-90 71-160 (229)
137 PRK13582 thrH phosphoserine ph 97.1 0.00081 1.7E-08 59.6 5.7 40 47-89 69-108 (205)
138 COG0637 Predicted phosphatase/ 97.1 0.0011 2.3E-08 60.4 6.4 59 43-104 83-141 (221)
139 TIGR01680 Veg_Stor_Prot vegeta 97.1 0.0011 2.3E-08 62.1 6.5 62 29-90 100-190 (275)
140 TIGR01454 AHBA_synth_RP 3-amin 97.1 0.0015 3.2E-08 58.1 7.2 55 43-100 72-126 (205)
141 PF13419 HAD_2: Haloacid dehal 97.1 0.0012 2.6E-08 55.8 6.4 55 43-100 74-128 (176)
142 TIGR01675 plant-AP plant acid 97.1 0.0012 2.6E-08 60.5 6.4 62 29-90 76-165 (229)
143 PLN02770 haloacid dehalogenase 97.1 0.0011 2.4E-08 61.2 6.3 55 44-101 106-160 (248)
144 TIGR01428 HAD_type_II 2-haloal 97.0 0.00088 1.9E-08 59.1 4.4 56 43-101 89-144 (198)
145 PRK10826 2-deoxyglucose-6-phos 96.9 0.0023 4.9E-08 57.7 6.7 55 43-100 89-143 (222)
146 PF12689 Acid_PPase: Acid Phos 96.9 0.0022 4.7E-08 56.1 6.3 58 30-88 3-86 (169)
147 PF08645 PNK3P: Polynucleotide 96.9 0.00064 1.4E-08 58.8 2.9 96 168-263 28-152 (159)
148 PRK13288 pyrophosphatase PpaX; 96.9 0.0023 5E-08 57.2 6.5 53 45-100 81-133 (214)
149 PF08235 LNS2: LNS2 (Lipin/Ned 96.9 0.0021 4.6E-08 55.4 5.6 40 33-72 2-53 (157)
150 TIGR01449 PGP_bact 2-phosphogl 96.8 0.0033 7.2E-08 55.8 6.9 54 44-100 83-136 (213)
151 TIGR03333 salvage_mtnX 2-hydro 96.8 0.00056 1.2E-08 61.6 1.8 90 171-266 72-180 (214)
152 TIGR02253 CTE7 HAD superfamily 96.8 0.0013 2.8E-08 58.9 3.7 54 44-100 92-145 (221)
153 TIGR01509 HAD-SF-IA-v3 haloaci 96.7 0.0053 1.1E-07 52.9 7.3 51 45-99 84-134 (183)
154 PRK14988 GMP/IMP nucleotidase; 96.7 0.0014 3E-08 59.6 3.5 56 43-101 90-145 (224)
155 PRK09552 mtnX 2-hydroxy-3-keto 96.7 0.0037 8E-08 56.4 6.2 41 43-85 71-111 (219)
156 PLN02575 haloacid dehalogenase 96.7 0.0034 7.3E-08 61.8 6.2 53 46-101 216-268 (381)
157 TIGR01484 HAD-SF-IIB HAD-super 96.7 0.0023 5E-08 56.8 4.6 41 33-73 2-44 (204)
158 PRK11587 putative phosphatase; 96.6 0.0092 2E-07 53.7 8.4 54 43-100 80-133 (218)
159 TIGR02009 PGMB-YQAB-SF beta-ph 96.6 0.0058 1.3E-07 52.9 6.6 52 44-100 86-137 (185)
160 PRK10187 trehalose-6-phosphate 96.6 0.0036 7.7E-08 58.6 5.4 55 30-86 14-75 (266)
161 PLN03243 haloacid dehalogenase 96.5 0.0026 5.6E-08 59.4 4.3 55 44-101 107-161 (260)
162 TIGR01990 bPGM beta-phosphoglu 96.5 0.0063 1.4E-07 52.7 6.2 53 44-101 85-137 (185)
163 PRK13226 phosphoglycolate phos 96.5 0.0048 1E-07 56.1 5.5 51 46-99 95-145 (229)
164 PRK13225 phosphoglycolate phos 96.5 0.008 1.7E-07 56.5 7.1 53 43-98 139-191 (273)
165 TIGR03351 PhnX-like phosphonat 96.4 0.0041 8.9E-08 55.7 4.4 54 45-101 86-141 (220)
166 PRK06698 bifunctional 5'-methy 96.4 0.0087 1.9E-07 60.3 7.1 54 45-101 329-382 (459)
167 PLN02940 riboflavin kinase 96.4 0.0073 1.6E-07 59.5 6.4 56 43-101 90-146 (382)
168 TIGR02252 DREG-2 REG-2-like, H 96.3 0.0047 1E-07 54.6 4.3 51 46-100 105-155 (203)
169 PLN02423 phosphomannomutase 96.3 0.0074 1.6E-07 55.7 5.7 42 29-71 5-48 (245)
170 KOG2961 Predicted hydrolase (H 96.3 0.017 3.6E-07 49.4 7.1 93 172-269 64-169 (190)
171 PRK13582 thrH phosphoserine ph 96.2 0.008 1.7E-07 53.2 5.4 91 171-267 70-170 (205)
172 TIGR02247 HAD-1A3-hyp Epoxide 96.2 0.0042 9.2E-08 55.3 3.5 56 44-100 92-147 (211)
173 TIGR01422 phosphonatase phosph 96.2 0.0038 8.3E-08 57.4 3.3 56 43-100 96-151 (253)
174 COG2503 Predicted secreted aci 96.2 0.011 2.4E-07 54.2 5.9 62 29-90 78-168 (274)
175 TIGR02250 FCP1_euk FCP1-like p 96.2 0.011 2.4E-07 50.9 5.7 39 47-88 59-97 (156)
176 COG3769 Predicted hydrolase (H 96.1 0.015 3.3E-07 52.6 6.3 60 29-90 6-65 (274)
177 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.1 0.013 2.8E-07 51.4 5.8 47 42-90 76-122 (201)
178 PRK13222 phosphoglycolate phos 96.0 0.025 5.4E-07 50.6 7.7 53 44-99 91-143 (226)
179 PRK09449 dUMP phosphatase; Pro 96.0 0.0051 1.1E-07 55.3 3.1 53 45-101 94-146 (224)
180 TIGR02251 HIF-SF_euk Dullard-l 96.0 0.015 3.2E-07 50.4 5.6 64 31-97 2-90 (162)
181 TIGR01490 HAD-SF-IB-hyp1 HAD-s 95.9 0.0097 2.1E-07 52.5 4.5 92 170-265 88-196 (202)
182 COG0546 Gph Predicted phosphat 95.9 0.013 2.8E-07 53.0 5.3 49 46-97 89-137 (220)
183 PRK08238 hypothetical protein; 95.9 0.012 2.6E-07 59.7 5.4 39 47-87 73-111 (479)
184 PF03031 NIF: NLI interacting 95.8 0.007 1.5E-07 51.7 2.7 52 31-83 1-73 (159)
185 TIGR01672 AphA HAD superfamily 95.8 0.028 6E-07 51.9 6.8 68 32-100 65-169 (237)
186 COG4996 Predicted phosphatase 95.7 0.022 4.7E-07 47.6 5.4 63 31-96 1-88 (164)
187 PF05152 DUF705: Protein of un 95.7 0.012 2.6E-07 55.2 4.1 74 29-105 121-198 (297)
188 PRK08238 hypothetical protein; 95.6 0.022 4.8E-07 57.8 6.0 91 172-271 75-169 (479)
189 PRK13223 phosphoglycolate phos 95.5 0.032 7E-07 52.2 6.5 52 45-99 100-151 (272)
190 PRK13478 phosphonoacetaldehyde 95.5 0.013 2.9E-07 54.4 3.9 55 44-100 99-153 (267)
191 TIGR01548 HAD-SF-IA-hyp1 haloa 95.4 0.015 3.2E-07 51.4 3.5 53 46-101 106-158 (197)
192 PF00702 Hydrolase: haloacid d 95.3 0.028 6E-07 49.5 5.1 86 37-129 118-206 (215)
193 TIGR02137 HSK-PSP phosphoserin 95.3 0.035 7.6E-07 49.8 5.5 95 171-269 70-173 (203)
194 TIGR01549 HAD-SF-IA-v1 haloaci 95.2 0.049 1.1E-06 45.8 6.0 52 44-99 62-113 (154)
195 TIGR02254 YjjG/YfnB HAD superf 95.0 0.021 4.5E-07 50.9 3.4 53 44-100 95-147 (224)
196 PLN02811 hydrolase 95.0 0.053 1.2E-06 48.8 6.1 53 44-99 76-129 (220)
197 PRK10725 fructose-1-P/6-phosph 94.9 0.051 1.1E-06 47.2 5.5 55 42-101 84-138 (188)
198 TIGR01489 DKMTPPase-SF 2,3-dik 94.9 0.037 8E-07 47.8 4.6 53 44-99 70-122 (188)
199 TIGR01525 ATPase-IB_hvy heavy 94.9 0.083 1.8E-06 54.6 7.9 100 29-138 363-467 (556)
200 TIGR00338 serB phosphoserine p 94.9 0.085 1.8E-06 47.1 7.0 43 46-90 85-127 (219)
201 TIGR01512 ATPase-IB2_Cd heavy 94.8 0.073 1.6E-06 54.8 7.2 97 32-138 344-445 (536)
202 COG1011 Predicted hydrolase (H 94.8 0.03 6.6E-07 50.1 3.7 54 45-102 98-151 (229)
203 TIGR01511 ATPase-IB1_Cu copper 94.7 0.16 3.5E-06 52.6 9.4 100 29-139 384-487 (562)
204 PRK09456 ?-D-glucose-1-phospha 94.7 0.025 5.4E-07 50.1 2.9 52 46-100 84-136 (199)
205 TIGR01993 Pyr-5-nucltdase pyri 94.6 0.043 9.4E-07 47.7 4.3 53 44-102 82-134 (184)
206 COG4087 Soluble P-type ATPase 94.4 0.28 6E-06 41.1 8.1 98 31-137 15-112 (152)
207 TIGR01488 HAD-SF-IB Haloacid D 94.2 0.046 1E-06 46.9 3.5 84 172-259 76-177 (177)
208 PLN03017 trehalose-phosphatase 94.2 0.068 1.5E-06 52.3 4.8 58 15-73 94-159 (366)
209 TIGR01544 HAD-SF-IE haloacid d 94.1 0.041 9E-07 51.9 3.2 84 172-259 124-230 (277)
210 PRK14501 putative bifunctional 94.1 0.08 1.7E-06 56.5 5.7 56 29-86 491-553 (726)
211 PRK10563 6-phosphogluconate ph 93.9 0.11 2.4E-06 46.5 5.5 50 44-99 86-136 (221)
212 COG4229 Predicted enolase-phos 93.7 0.46 9.9E-06 42.1 8.5 98 167-269 101-206 (229)
213 PLN02919 haloacid dehalogenase 93.7 0.11 2.5E-06 57.6 6.0 52 47-101 162-214 (1057)
214 TIGR02245 HAD_IIID1 HAD-superf 93.7 0.17 3.6E-06 45.3 6.0 58 29-89 20-85 (195)
215 TIGR01512 ATPase-IB2_Cd heavy 93.5 0.11 2.4E-06 53.5 5.2 88 168-266 361-450 (536)
216 TIGR01691 enolase-ppase 2,3-di 93.5 0.15 3.2E-06 46.5 5.4 56 19-74 60-123 (220)
217 TIGR01525 ATPase-IB_hvy heavy 93.4 0.061 1.3E-06 55.6 3.1 89 168-266 383-473 (556)
218 PF06437 ISN1: IMP-specific 5' 93.3 0.14 3E-06 50.0 5.2 57 29-85 146-206 (408)
219 TIGR02137 HSK-PSP phosphoserin 93.3 0.31 6.8E-06 43.7 7.3 44 44-90 66-109 (203)
220 PLN02779 haloacid dehalogenase 93.3 0.23 4.9E-06 46.9 6.6 38 46-85 144-181 (286)
221 PLN02954 phosphoserine phospha 93.0 0.14 3.1E-06 45.8 4.7 41 46-88 84-124 (224)
222 PLN02151 trehalose-phosphatase 93.0 0.17 3.7E-06 49.3 5.5 55 17-72 83-145 (354)
223 PLN02382 probable sucrose-phos 92.9 0.16 3.4E-06 50.7 5.2 57 32-90 11-71 (413)
224 TIGR01544 HAD-SF-IE haloacid d 92.8 0.19 4.1E-06 47.4 5.3 45 44-90 119-163 (277)
225 PRK10748 flavin mononucleotide 92.6 0.089 1.9E-06 48.1 2.8 48 45-101 112-159 (238)
226 PLN02205 alpha,alpha-trehalose 92.1 0.31 6.7E-06 53.0 6.5 53 29-83 595-652 (854)
227 TIGR01533 lipo_e_P4 5'-nucleot 91.0 0.15 3.2E-06 47.9 2.4 86 169-258 118-206 (266)
228 TIGR00685 T6PP trehalose-phosp 91.0 0.36 7.9E-06 44.3 4.9 43 29-71 2-51 (244)
229 PLN02580 trehalose-phosphatase 90.9 0.43 9.4E-06 47.1 5.6 57 15-72 102-166 (384)
230 TIGR01488 HAD-SF-IB Haloacid D 90.3 0.43 9.2E-06 40.8 4.5 46 42-89 69-114 (177)
231 TIGR01522 ATPase-IIA2_Ca golgi 90.3 1 2.2E-05 49.4 8.3 58 38-98 520-577 (884)
232 COG4850 Uncharacterized conser 90.2 1.2 2.5E-05 42.8 7.5 58 32-89 163-241 (373)
233 KOG1615 Phosphoserine phosphat 90.2 0.91 2E-05 40.6 6.4 27 46-72 88-114 (227)
234 PRK10671 copA copper exporting 90.0 0.92 2E-05 49.3 7.7 100 30-139 630-733 (834)
235 PF05116 S6PP: Sucrose-6F-phos 89.7 0.29 6.2E-06 45.2 3.1 62 31-98 3-67 (247)
236 PF05761 5_nucleotid: 5' nucle 89.7 0.045 9.9E-07 55.0 -2.4 95 172-266 186-323 (448)
237 TIGR01493 HAD-SF-IA-v2 Haloaci 89.1 0.15 3.3E-06 43.7 0.7 49 42-100 86-134 (175)
238 TIGR01459 HAD-SF-IIA-hyp4 HAD- 88.7 0.31 6.8E-06 44.6 2.6 88 167-261 22-116 (242)
239 PRK05301 pyrroloquinoline quin 88.7 3.8 8.3E-05 40.0 10.3 42 48-89 76-117 (378)
240 PRK11133 serB phosphoserine ph 88.3 1.8 3.9E-05 41.8 7.6 42 46-89 181-222 (322)
241 PRK11590 hypothetical protein; 88.3 0.75 1.6E-05 41.2 4.7 41 45-87 94-135 (211)
242 COG2217 ZntA Cation transport 88.2 1.7 3.8E-05 46.3 7.9 111 32-154 519-641 (713)
243 TIGR01490 HAD-SF-IB-hyp1 HAD-s 88.1 0.63 1.4E-05 40.8 4.0 44 45-90 86-129 (202)
244 TIGR01511 ATPase-IB1_Cu copper 87.5 1.5 3.1E-05 45.6 6.9 84 168-262 404-488 (562)
245 PRK11590 hypothetical protein; 87.1 0.58 1.3E-05 41.9 3.3 27 242-270 179-205 (211)
246 COG4359 Uncharacterized conser 87.1 7.2 0.00016 34.7 9.8 60 189-261 121-180 (220)
247 PRK11033 zntA zinc/cadmium/mer 86.9 2.1 4.5E-05 46.0 7.8 97 30-138 548-648 (741)
248 KOG2116 Protein involved in pl 86.4 1.3 2.7E-05 46.2 5.5 72 31-103 531-619 (738)
249 TIGR02109 PQQ_syn_pqqE coenzym 86.3 7.6 0.00016 37.5 10.8 42 48-89 67-108 (358)
250 TIGR03333 salvage_mtnX 2-hydro 85.9 1.2 2.5E-05 39.9 4.6 42 43-86 67-108 (214)
251 KOG2914 Predicted haloacid-hal 85.7 1.2 2.6E-05 40.7 4.5 35 41-75 87-121 (222)
252 COG5083 SMP2 Uncharacterized p 85.2 1.8 3.9E-05 43.1 5.7 74 29-103 374-464 (580)
253 TIGR02251 HIF-SF_euk Dullard-l 85.0 0.12 2.6E-06 44.6 -2.2 88 172-266 45-138 (162)
254 PHA02597 30.2 hypothetical pro 84.6 1.4 3E-05 38.6 4.3 55 43-100 71-128 (197)
255 TIGR01482 SPP-subfamily Sucros 84.5 1.7 3.7E-05 38.6 5.0 47 223-270 145-195 (225)
256 PF06189 5-nucleotidase: 5'-nu 84.3 1.8 3.8E-05 40.4 5.0 76 32-109 123-232 (264)
257 COG0731 Fe-S oxidoreductases [ 83.6 2.8 6E-05 39.9 6.1 41 29-73 79-120 (296)
258 TIGR01497 kdpB K+-transporting 83.5 3.8 8.3E-05 43.5 7.7 93 37-139 437-529 (675)
259 PF09587 PGA_cap: Bacterial ca 83.0 12 0.00026 34.3 10.0 70 17-88 26-107 (250)
260 PRK01122 potassium-transportin 82.7 4.5 9.8E-05 43.0 7.8 91 37-137 436-526 (679)
261 PRK01158 phosphoglycolate phos 82.5 2.6 5.7E-05 37.6 5.3 46 224-270 154-203 (230)
262 COG1877 OtsB Trehalose-6-phosp 82.4 2.9 6.3E-05 39.2 5.7 42 29-70 17-65 (266)
263 PLN03063 alpha,alpha-trehalose 82.0 2.8 6E-05 45.5 6.1 54 29-84 506-569 (797)
264 TIGR01484 HAD-SF-IIB HAD-super 81.7 3.1 6.8E-05 36.5 5.5 40 223-263 159-202 (204)
265 KOG0207 Cation transport ATPas 81.7 7.3 0.00016 42.3 8.9 115 29-154 702-827 (951)
266 COG0560 SerB Phosphoserine pho 81.4 2.3 5E-05 38.4 4.5 43 45-90 76-119 (212)
267 PRK14010 potassium-transportin 81.3 4.9 0.00011 42.7 7.5 92 37-138 432-523 (673)
268 KOG3085 Predicted hydrolase (H 80.2 2.1 4.5E-05 39.5 3.8 67 30-102 99-165 (237)
269 TIGR00685 T6PP trehalose-phosp 79.8 2.2 4.8E-05 39.0 3.9 42 224-266 160-216 (244)
270 TIGR01545 YfhB_g-proteo haloac 79.6 2.2 4.8E-05 38.4 3.8 28 46-73 94-122 (210)
271 TIGR02886 spore_II_AA anti-sig 79.4 6.8 0.00015 30.6 6.2 58 29-90 38-95 (106)
272 PLN03064 alpha,alpha-trehalose 78.1 4.5 9.7E-05 44.5 6.1 56 29-86 590-661 (934)
273 PF04312 DUF460: Protein of un 78.1 7.6 0.00017 32.7 6.2 57 31-88 44-102 (138)
274 PF05690 ThiG: Thiazole biosyn 77.8 24 0.00051 32.6 9.8 84 172-268 110-205 (247)
275 TIGR01487 SPP-like sucrose-pho 77.8 4.7 0.0001 35.8 5.3 42 227-269 147-192 (215)
276 COG3882 FkbH Predicted enzyme 77.4 3 6.5E-05 42.2 4.2 44 29-72 221-281 (574)
277 PRK13361 molybdenum cofactor b 76.8 11 0.00024 36.1 8.0 41 48-89 75-117 (329)
278 COG0602 NrdG Organic radical a 76.6 2.9 6.4E-05 37.8 3.6 56 17-74 54-111 (212)
279 TIGR01647 ATPase-IIIA_H plasma 75.9 11 0.00024 40.5 8.4 50 38-89 434-483 (755)
280 TIGR01517 ATPase-IIB_Ca plasma 75.8 12 0.00027 41.3 8.9 50 39-90 572-621 (941)
281 PF01740 STAS: STAS domain; I 75.6 3.9 8.4E-05 32.5 3.8 57 30-90 48-104 (117)
282 TIGR03470 HpnH hopanoid biosyn 75.5 23 0.0005 33.9 9.7 43 44-87 81-124 (318)
283 TIGR01684 viral_ppase viral ph 75.2 1.1 2.3E-05 42.7 0.4 77 171-254 148-226 (301)
284 PF06941 NT5C: 5' nucleotidase 74.8 3.1 6.7E-05 36.5 3.3 32 41-72 68-99 (191)
285 COG3700 AphA Acid phosphatase 73.9 3 6.5E-05 36.9 2.8 39 227-266 172-210 (237)
286 cd07041 STAS_RsbR_RsbS_like Su 73.6 9.6 0.00021 29.9 5.6 57 29-89 40-96 (109)
287 TIGR00377 ant_ant_sig anti-ant 72.9 13 0.00028 28.9 6.2 66 21-90 34-99 (108)
288 PF02358 Trehalose_PPase: Treh 72.8 2.5 5.4E-05 38.4 2.2 39 34-72 1-46 (235)
289 TIGR02495 NrdG2 anaerobic ribo 71.8 12 0.00025 32.6 6.2 49 37-87 63-113 (191)
290 PF12710 HAD: haloacid dehalog 71.7 6.2 0.00013 33.8 4.4 39 49-89 92-130 (192)
291 TIGR01116 ATPase-IIA1_Ca sarco 71.2 15 0.00033 40.4 8.2 49 39-89 530-578 (917)
292 KOG2961 Predicted hydrolase (H 70.0 23 0.00049 30.7 7.1 69 29-98 42-120 (190)
293 PF06888 Put_Phosphatase: Puta 69.7 6.4 0.00014 36.3 4.2 55 42-99 67-123 (234)
294 COG4464 CapC Capsular polysacc 69.6 29 0.00062 31.8 8.1 135 32-197 7-141 (254)
295 cd06844 STAS Sulphate Transpor 69.1 15 0.00032 28.5 5.6 57 29-89 38-94 (100)
296 PRK10517 magnesium-transportin 69.1 14 0.00029 40.8 7.2 48 39-88 543-590 (902)
297 cd07043 STAS_anti-anti-sigma_f 68.9 16 0.00034 27.5 5.7 65 21-90 30-94 (99)
298 COG4087 Soluble P-type ATPase 68.2 51 0.0011 27.9 8.7 82 170-264 31-117 (152)
299 PF12689 Acid_PPase: Acid Phos 68.0 8 0.00017 33.8 4.2 97 170-268 46-152 (169)
300 PRK10671 copA copper exporting 67.1 29 0.00063 37.8 9.2 84 168-265 649-737 (834)
301 CHL00162 thiG thiamin biosynth 67.0 52 0.0011 30.8 9.4 83 173-268 125-219 (267)
302 COG1366 SpoIIAA Anti-anti-sigm 66.1 28 0.00061 27.8 6.9 58 29-90 43-100 (117)
303 TIGR01545 YfhB_g-proteo haloac 65.5 2.9 6.3E-05 37.6 1.0 20 29-48 4-23 (210)
304 KOG2134 Polynucleotide kinase 65.0 7.3 0.00016 38.4 3.7 81 29-109 74-182 (422)
305 COG2216 KdpB High-affinity K+ 64.8 26 0.00056 36.1 7.5 121 6-137 403-528 (681)
306 TIGR01524 ATPase-IIIB_Mg magne 64.3 25 0.00055 38.5 8.1 48 39-88 508-555 (867)
307 PRK10076 pyruvate formate lyas 63.5 12 0.00025 33.9 4.5 48 36-83 38-88 (213)
308 KOG2470 Similar to IMP-GMP spe 63.5 17 0.00036 35.6 5.7 94 172-266 243-374 (510)
309 TIGR02463 MPGP_rel mannosyl-3- 63.0 16 0.00035 32.4 5.4 36 226-264 180-219 (221)
310 PRK15122 magnesium-transportin 62.8 23 0.00051 39.0 7.5 48 39-88 543-590 (903)
311 PF12710 HAD: haloacid dehalog 62.6 3.7 8.1E-05 35.2 1.1 13 33-45 1-13 (192)
312 TIGR01523 ATPase-IID_K-Na pota 62.2 30 0.00064 38.9 8.3 48 39-88 639-686 (1053)
313 COG0826 Collagenase and relate 61.8 51 0.0011 32.2 8.9 141 147-299 26-182 (347)
314 smart00775 LNS2 LNS2 domain. T 61.2 40 0.00087 28.7 7.3 91 168-263 26-142 (157)
315 TIGR02668 moaA_archaeal probab 60.0 43 0.00094 31.4 8.0 41 47-88 69-110 (302)
316 COG0560 SerB Phosphoserine pho 60.0 7.8 0.00017 34.9 2.8 42 226-268 143-188 (212)
317 PF00532 Peripla_BP_1: Peripla 58.9 1.2E+02 0.0027 28.0 10.8 28 168-195 161-190 (279)
318 PRK13762 tRNA-modifying enzyme 58.7 28 0.00062 33.5 6.5 34 47-82 143-176 (322)
319 KOG4549 Magnesium-dependent ph 58.3 37 0.0008 28.5 6.1 56 32-88 20-85 (144)
320 PRK00208 thiG thiazole synthas 56.9 89 0.0019 29.1 9.1 98 167-268 102-205 (250)
321 PLN02645 phosphoglycolate phos 56.7 46 0.001 31.6 7.6 84 170-265 45-136 (311)
322 cd06592 GH31_glucosidase_KIAA1 56.0 30 0.00065 32.8 6.2 56 17-72 28-93 (303)
323 cd06591 GH31_xylosidase_XylS X 54.8 39 0.00085 32.3 6.8 44 29-72 39-89 (319)
324 COG0263 ProB Glutamate 5-kinas 54.4 2.2E+02 0.0049 28.0 14.0 200 47-267 29-258 (369)
325 TIGR02666 moaA molybdenum cofa 53.9 59 0.0013 31.1 7.9 41 47-88 72-114 (334)
326 TIGR03278 methan_mark_10 putat 53.7 41 0.00088 33.6 6.8 55 36-90 73-132 (404)
327 TIGR00099 Cof-subfamily Cof su 53.4 28 0.00062 31.6 5.4 41 229-270 190-234 (256)
328 KOG3189 Phosphomannomutase [Li 53.2 26 0.00056 31.7 4.8 38 32-70 13-51 (252)
329 cd04728 ThiG Thiazole synthase 52.0 1.3E+02 0.0028 28.1 9.2 92 173-268 111-205 (248)
330 COG1180 PflA Pyruvate-formate 51.9 25 0.00055 32.7 4.8 46 33-78 80-128 (260)
331 PF05761 5_nucleotid: 5' nucle 51.8 9.4 0.0002 38.6 2.0 26 48-73 185-210 (448)
332 TIGR02826 RNR_activ_nrdG3 anae 51.1 23 0.00051 30.0 4.1 51 17-72 47-98 (147)
333 TIGR03365 Bsubt_queE 7-cyano-7 51.0 18 0.00038 33.2 3.6 39 37-75 73-113 (238)
334 PF13344 Hydrolase_6: Haloacid 50.8 38 0.00083 26.6 5.1 82 169-261 14-100 (101)
335 COG4359 Uncharacterized conser 50.8 28 0.0006 31.2 4.5 31 44-74 71-101 (220)
336 smart00729 Elp3 Elongator prot 49.8 1.6E+02 0.0034 24.9 10.0 54 36-89 51-113 (216)
337 TIGR01522 ATPase-IIA2_Ca golgi 49.7 25 0.00054 38.6 5.0 95 169-264 528-641 (884)
338 COG2022 ThiG Uncharacterized e 49.2 1.3E+02 0.0027 28.0 8.6 84 173-269 118-213 (262)
339 PF09547 Spore_IV_A: Stage IV 48.9 47 0.001 33.6 6.3 88 4-91 115-214 (492)
340 cd06598 GH31_transferase_CtsZ 48.5 59 0.0013 31.0 6.9 69 18-87 23-109 (317)
341 PRK11033 zntA zinc/cadmium/mer 47.2 67 0.0015 34.6 7.8 85 169-265 568-653 (741)
342 TIGR01106 ATPase-IIC_X-K sodiu 46.8 33 0.00071 38.3 5.5 48 39-88 561-608 (997)
343 PRK11840 bifunctional sulfur c 46.7 1.2E+02 0.0027 29.3 8.7 97 167-269 176-280 (326)
344 TIGR02990 ectoine_eutA ectoine 46.6 55 0.0012 30.2 6.1 39 47-89 84-122 (239)
345 COG5610 Predicted hydrolase (H 45.9 7.4 0.00016 39.3 0.2 91 173-275 103-208 (635)
346 PRK00192 mannosyl-3-phosphogly 45.7 34 0.00074 31.6 4.7 38 231-269 194-236 (273)
347 KOG3120 Predicted haloacid deh 45.6 23 0.00051 32.5 3.3 54 42-98 80-134 (256)
348 PF13394 Fer4_14: 4Fe-4S singl 44.9 3.7 8E-05 32.8 -1.7 36 39-74 50-92 (119)
349 cd06595 GH31_xylosidase_XylS-l 43.8 47 0.001 31.3 5.4 55 18-72 24-97 (292)
350 PRK00164 moaA molybdenum cofac 43.7 1E+02 0.0022 29.4 7.7 40 48-88 79-120 (331)
351 TIGR02494 PFLE_PFLC glycyl-rad 43.3 42 0.0009 31.4 4.9 48 36-83 125-175 (295)
352 PRK07094 biotin synthase; Prov 42.5 2.6E+02 0.0057 26.4 10.4 113 48-192 102-215 (323)
353 PLN02951 Molybderin biosynthes 42.5 1.3E+02 0.0029 29.4 8.5 40 48-88 120-161 (373)
354 PLN02177 glycerol-3-phosphate 42.4 17 0.00037 37.2 2.3 21 29-49 21-41 (497)
355 TIGR01452 PGP_euk phosphoglyco 42.3 30 0.00065 32.2 3.8 39 29-73 131-169 (279)
356 cd07042 STAS_SulP_like_sulfate 41.1 58 0.0013 24.7 4.7 57 30-90 41-97 (107)
357 TIGR01494 ATPase_P-type ATPase 38.8 39 0.00085 34.3 4.3 44 30-73 327-374 (499)
358 COG4229 Predicted enolase-phos 38.4 20 0.00044 31.9 1.8 57 20-76 69-133 (229)
359 COG5663 Uncharacterized conser 38.3 34 0.00074 30.1 3.1 37 234-270 128-164 (194)
360 PRK10966 exonuclease subunit S 37.7 94 0.002 30.9 6.6 83 5-89 2-104 (407)
361 TIGR01657 P-ATPase-V P-type AT 37.6 61 0.0013 36.4 5.8 49 39-89 649-697 (1054)
362 TIGR02468 sucrsPsyn_pln sucros 37.4 63 0.0014 36.3 5.7 64 31-98 771-838 (1050)
363 PRK11660 putative transporter; 36.8 75 0.0016 33.0 6.0 56 29-89 490-545 (568)
364 TIGR02461 osmo_MPG_phos mannos 36.0 43 0.00093 30.3 3.6 22 242-264 202-223 (225)
365 PRK11145 pflA pyruvate formate 35.4 52 0.0011 29.8 4.1 37 37-73 71-110 (246)
366 PF11019 DUF2608: Protein of u 35.1 70 0.0015 29.6 5.0 41 50-90 85-126 (252)
367 PRK10976 putative hydrolase; P 35.0 58 0.0012 29.7 4.4 41 229-270 192-236 (266)
368 cd01421 IMPCH Inosine monophos 34.9 88 0.0019 27.8 5.3 56 48-110 10-65 (187)
369 KOG2630 Enolase-phosphatase E- 33.6 2.2E+02 0.0048 26.4 7.6 95 167-266 121-223 (254)
370 cd06603 GH31_GANC_GANAB_alpha 33.5 1.1E+02 0.0023 29.5 6.2 55 18-72 23-87 (339)
371 PHA03398 viral phosphatase sup 33.5 16 0.00035 34.9 0.4 43 171-216 150-193 (303)
372 TIGR02493 PFLA pyruvate format 33.4 72 0.0016 28.6 4.7 46 39-84 68-118 (235)
373 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.4 51 0.0011 26.2 3.4 28 48-75 59-86 (126)
374 cd01335 Radical_SAM Radical SA 33.1 1.2E+02 0.0026 25.1 5.9 42 49-90 59-102 (204)
375 cd01965 Nitrogenase_MoFe_beta_ 33.1 4.9E+02 0.011 25.7 11.8 40 224-265 355-394 (428)
376 PRK10513 sugar phosphate phosp 33.0 85 0.0018 28.6 5.2 40 228-268 197-240 (270)
377 COG0474 MgtA Cation transport 33.0 87 0.0019 34.7 6.0 59 39-100 540-600 (917)
378 TIGR00213 GmhB_yaeD D,D-heptos 32.7 33 0.00071 29.5 2.2 25 171-195 28-53 (176)
379 cd05014 SIS_Kpsf KpsF-like pro 32.5 54 0.0012 26.1 3.4 28 47-74 59-86 (128)
380 PLN02499 glycerol-3-phosphate 31.7 30 0.00065 35.4 2.0 23 29-51 7-29 (498)
381 TIGR01664 DNA-3'-Pase DNA 3'-p 31.5 36 0.00077 29.3 2.2 98 170-267 43-162 (166)
382 PF04055 Radical_SAM: Radical 31.0 1.1E+02 0.0024 24.7 5.1 54 47-101 58-114 (166)
383 TIGR01656 Histidinol-ppas hist 30.8 37 0.0008 28.2 2.2 26 170-195 28-54 (147)
384 PRK06769 hypothetical protein; 30.5 36 0.00079 29.3 2.1 26 170-195 29-55 (173)
385 TIGR03470 HpnH hopanoid biosyn 30.5 1.5E+02 0.0034 28.2 6.6 67 21-88 116-193 (318)
386 COG0647 NagD Predicted sugar p 30.1 2.4E+02 0.0053 26.5 7.7 31 168-198 23-54 (269)
387 PRK13125 trpA tryptophan synth 30.1 1.1E+02 0.0024 27.9 5.4 47 37-83 102-150 (244)
388 smart00540 LEM in nuclear memb 30.1 28 0.0006 23.5 1.0 31 52-84 9-39 (44)
389 PF00919 UPF0004: Uncharacteri 29.8 1.1E+02 0.0024 24.0 4.6 22 133-154 22-43 (98)
390 KOG2470 Similar to IMP-GMP spe 29.8 46 0.001 32.6 2.8 25 50-74 244-268 (510)
391 KOG2134 Polynucleotide kinase 29.0 1.2E+02 0.0027 30.1 5.6 107 146-264 89-230 (422)
392 TIGR01675 plant-AP plant acid 28.7 35 0.00075 31.4 1.7 27 170-196 121-148 (229)
393 TIGR01518 g3p_cytidyltrns glyc 28.6 2.5E+02 0.0055 22.5 6.8 91 175-268 15-112 (125)
394 KOG0202 Ca2+ transporting ATPa 28.6 1.1E+02 0.0023 33.6 5.4 56 31-91 572-627 (972)
395 COG1778 Low specificity phosph 28.4 1.8E+02 0.004 25.3 5.9 77 178-267 44-126 (170)
396 PF06014 DUF910: Bacterial pro 28.2 37 0.00081 24.7 1.5 24 233-257 8-31 (62)
397 cd01037 Restriction_endonuclea 27.7 94 0.002 21.5 3.7 50 19-70 28-80 (80)
398 PF13353 Fer4_12: 4Fe-4S singl 27.7 1.1E+02 0.0025 24.5 4.6 27 49-75 70-97 (139)
399 cd01522 RHOD_1 Member of the R 27.7 1.4E+02 0.0031 23.6 5.1 29 61-89 63-91 (117)
400 PF08282 Hydrolase_3: haloacid 27.5 1E+02 0.0022 26.9 4.6 34 232-267 191-228 (254)
401 COG5663 Uncharacterized conser 27.4 39 0.00084 29.7 1.7 27 32-58 8-34 (194)
402 cd01523 RHOD_Lact_B Member of 27.2 1E+02 0.0022 23.4 4.0 28 61-88 60-87 (100)
403 CHL00200 trpA tryptophan synth 27.1 1.5E+02 0.0033 27.7 5.8 35 36-71 119-153 (263)
404 TIGR00815 sulP high affinity s 27.1 82 0.0018 32.6 4.4 57 30-90 494-550 (563)
405 cd06593 GH31_xylosidase_YicI Y 27.1 2.1E+02 0.0046 26.9 6.9 56 17-72 22-89 (308)
406 TIGR03471 HpnJ hopanoid biosyn 26.8 5.3E+02 0.011 25.9 10.1 67 19-90 234-301 (472)
407 cd04240 AAK_UC AAK_UC: Unchara 26.8 1.2E+02 0.0026 27.0 4.8 50 41-90 2-52 (203)
408 COG1419 FlhF Flagellar GTP-bin 26.7 92 0.002 31.1 4.4 55 16-74 323-377 (407)
409 TIGR01652 ATPase-Plipid phosph 26.7 91 0.002 35.0 4.9 49 39-89 624-672 (1057)
410 cd05710 SIS_1 A subgroup of th 26.5 82 0.0018 25.2 3.5 28 48-75 60-87 (120)
411 COG3473 Maleate cis-trans isom 26.3 5.1E+02 0.011 23.7 8.6 55 51-110 87-143 (238)
412 TIGR00679 hpr-ser Hpr(Ser) kin 26.2 1.4E+02 0.0031 28.6 5.4 92 50-142 70-174 (304)
413 TIGR02836 spore_IV_A stage IV 26.2 1.7E+02 0.0036 29.8 6.0 83 5-88 116-211 (492)
414 PF07184 CTV_P33: Citrus trist 25.9 23 0.00049 31.8 0.0 19 308-327 139-157 (303)
415 PF00072 Response_reg: Respons 25.7 2.9E+02 0.0062 20.6 7.1 65 17-90 31-97 (112)
416 TIGR01662 HAD-SF-IIIA HAD-supe 25.6 47 0.001 26.7 1.9 27 168-194 24-51 (132)
417 PRK10658 putative alpha-glucos 25.4 1.8E+02 0.004 31.0 6.6 53 20-72 284-348 (665)
418 PF14528 LAGLIDADG_3: LAGLIDAD 25.4 19 0.0004 26.5 -0.5 43 34-90 7-49 (77)
419 COG2433 Uncharacterized conser 25.4 3.2E+02 0.0069 28.8 8.0 57 32-88 257-314 (652)
420 KOG3349 Predicted glycosyltran 25.4 88 0.0019 27.1 3.4 42 48-90 87-131 (170)
421 TIGR02491 NrdG anaerobic ribon 25.4 1E+02 0.0022 26.1 3.9 37 37-73 64-106 (154)
422 TIGR01486 HAD-SF-IIB-MPGP mann 24.8 1.1E+02 0.0024 27.8 4.3 38 231-269 180-223 (256)
423 cd06599 GH31_glycosidase_Aec37 24.8 2.6E+02 0.0057 26.6 7.1 58 30-87 45-112 (317)
424 cd04724 Tryptophan_synthase_al 24.8 1.7E+02 0.0037 26.7 5.6 33 38-71 106-138 (242)
425 TIGR02026 BchE magnesium-proto 24.6 5.6E+02 0.012 26.0 9.9 40 50-89 256-300 (497)
426 TIGR03127 RuMP_HxlB 6-phospho 24.6 1.2E+02 0.0025 26.0 4.3 28 48-75 85-112 (179)
427 KOG0370 Multifunctional pyrimi 24.3 1.7E+02 0.0036 32.7 6.0 18 181-198 1013-1030(1435)
428 PRK05428 HPr kinase/phosphoryl 24.1 1.8E+02 0.0039 28.0 5.7 92 50-142 70-174 (308)
429 cd06600 GH31_MGAM-like This fa 23.8 1.3E+02 0.0028 28.7 4.8 43 30-72 40-87 (317)
430 TIGR01458 HAD-SF-IIA-hyp3 HAD- 23.7 1.1E+02 0.0023 28.2 4.1 40 30-73 108-147 (257)
431 PF03709 OKR_DC_1_N: Orn/Lys/A 23.5 56 0.0012 26.3 1.9 46 21-72 29-77 (115)
432 PRK00881 purH bifunctional pho 23.4 2.3E+02 0.0049 29.3 6.5 101 27-153 1-102 (513)
433 PF07075 DUF1343: Protein of u 23.1 80 0.0017 31.1 3.2 51 20-72 71-122 (365)
434 PRK06740 histidinol-phosphatas 22.7 4.8E+02 0.01 25.1 8.5 43 227-270 272-325 (331)
435 COG3700 AphA Acid phosphatase 22.7 2.4E+02 0.0051 25.3 5.6 54 30-83 63-152 (237)
436 PF03537 Glyco_hydro_114: Glyc 22.7 1.4E+02 0.003 22.1 3.8 34 29-72 26-60 (74)
437 COG0794 GutQ Predicted sugar p 22.5 3.1E+02 0.0067 24.7 6.5 28 172-199 100-129 (202)
438 PF14597 Lactamase_B_5: Metall 22.4 1.1E+02 0.0024 27.3 3.6 36 46-81 38-76 (199)
439 PF01380 SIS: SIS domain SIS d 22.4 1.5E+02 0.0032 23.4 4.3 28 48-75 66-93 (131)
440 COG3785 Uncharacterized conser 22.3 52 0.0011 26.4 1.4 33 29-61 27-59 (116)
441 COG3876 Uncharacterized protei 22.2 1E+02 0.0022 29.9 3.5 47 22-70 118-164 (409)
442 PF10881 DUF2726: Protein of u 22.1 2.7E+02 0.0058 22.4 5.8 61 23-83 51-123 (126)
443 PRK06372 translation initiatio 22.1 1.2E+02 0.0026 28.2 4.1 56 16-73 140-196 (253)
444 TIGR00262 trpA tryptophan synt 22.1 2E+02 0.0044 26.6 5.6 39 50-88 103-142 (256)
445 TIGR02329 propionate_PrpR prop 21.8 3.6E+02 0.0078 27.9 7.8 34 237-272 142-175 (526)
446 KOG1154 Gamma-glutamyl kinase 21.7 3.5E+02 0.0077 25.2 6.8 23 50-72 36-58 (285)
447 cd06602 GH31_MGAM_SI_GAA This 21.4 1.6E+02 0.0034 28.5 4.9 43 30-72 40-89 (339)
448 COG2344 AT-rich DNA-binding pr 21.4 1.8E+02 0.0038 26.2 4.6 58 32-89 113-173 (211)
449 TIGR00355 purH phosphoribosyla 21.3 2.1E+02 0.0045 29.5 5.8 57 48-111 10-66 (511)
450 PRK08508 biotin synthase; Prov 21.2 2.3E+02 0.005 26.5 5.8 45 46-90 72-116 (279)
451 cd01518 RHOD_YceA Member of th 21.2 1.5E+02 0.0033 22.5 3.9 30 60-89 59-88 (101)
452 cd05006 SIS_GmhA Phosphoheptos 21.2 1.5E+02 0.0033 25.3 4.3 28 47-74 113-140 (177)
453 PRK00994 F420-dependent methyl 21.2 2.1E+02 0.0045 26.7 5.2 51 36-88 60-111 (277)
454 TIGR00619 sbcd exonuclease Sbc 21.1 2E+02 0.0042 26.5 5.3 66 6-73 3-86 (253)
455 COG1184 GCD2 Translation initi 21.0 1.4E+02 0.003 28.6 4.2 67 5-73 165-232 (301)
456 PRK06731 flhF flagellar biosyn 20.9 88 0.0019 29.4 2.9 52 19-74 199-250 (270)
457 COG2604 Uncharacterized protei 20.7 6.3E+02 0.014 26.6 9.1 109 120-251 249-365 (594)
458 PRK08942 D,D-heptose 1,7-bisph 20.4 73 0.0016 27.3 2.1 25 171-195 31-56 (181)
459 PF01406 tRNA-synt_1e: tRNA sy 20.3 5.9E+02 0.013 24.4 8.3 97 54-199 36-132 (300)
460 cd04906 ACT_ThrD-I_1 First of 20.1 1.7E+02 0.0037 21.9 3.9 21 51-71 55-75 (85)
461 cd00153 RalGDS_RA Ubiquitin do 20.0 1.5E+02 0.0032 23.0 3.4 28 63-90 18-45 (87)
No 1
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=333.64 Aligned_cols=224 Identities=25% Similarity=0.392 Sum_probs=200.0
Q ss_pred HHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCC-hhHHHHHHHh-CCCCccccccccccH
Q 019991 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKS-LGFDPSLFAGAITSG 99 (332)
Q Consensus 22 ~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~-~~~~~~~L~~-lGl~~~~f~~Iits~ 99 (332)
.++.+ +|++|+||+|||||+|.+++||+.++|+.|+++|+|++|+|||+++ ++.+.++|+. .|++.. .++|+||+
T Consensus 2 ~~~~~--~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~-~~~i~TS~ 78 (269)
T COG0647 2 FDVMD--KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT-PDDIVTSG 78 (269)
T ss_pred cchhh--hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC-HHHeecHH
Confidence 35566 8999999999999999999999999999999999999999999964 5569999999 566677 49999999
Q ss_pred HHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCC--ccEEEEecCCCCCCCCCCCcccCHHHHHHH
Q 019991 100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEE--ADFILAHGTEGMGLPSGDVRPMSLQDLEKI 177 (332)
Q Consensus 100 ~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~--~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~ 177 (332)
+++++||++..+ +++||++|.+.. ..++++.|++++++.+. +++|++ |+|++++|+++.++
T Consensus 79 ~at~~~l~~~~~------~~kv~viG~~~l-~~~l~~~G~~~~~~~~~~~~d~Vv~----------g~d~~~~~e~l~~a 141 (269)
T COG0647 79 DATADYLAKQKP------GKKVYVIGEEGL-KEELEGAGFELVDEEEPARVDAVVV----------GLDRTLTYEKLAEA 141 (269)
T ss_pred HHHHHHHHhhCC------CCEEEEECCcch-HHHHHhCCcEEeccCCCCcccEEEE----------ecCCCCCHHHHHHH
Confidence 999999999865 478999996543 35899999988764333 578888 78999999999999
Q ss_pred HHHHHhCCCcEEEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeCChhhH
Q 019991 178 LEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLESSPYSL 252 (332)
Q Consensus 178 l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~D 252 (332)
+.. .++|+++|+||||..+|.++++.+++|++++.++.+ |+++.+.|||+|.+|+.|+++++. .+||||++.||
T Consensus 142 ~~~-i~~g~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TD 220 (269)
T COG0647 142 LLA-IAAGAPFIATNPDLTVPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTD 220 (269)
T ss_pred HHH-HHcCCcEEEeCCCccccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhh
Confidence 986 577899999999999999998889999999999996 788889999999999999999997 59999999999
Q ss_pred HHHHHHcCCcEEEE
Q 019991 253 LEGSMQLNLDLTVM 266 (332)
Q Consensus 253 I~gA~~aG~~ti~~ 266 (332)
|.+|+++||+|+++
T Consensus 221 I~~a~~~G~~t~LV 234 (269)
T COG0647 221 ILGAKAAGLDTLLV 234 (269)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999988
No 2
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=304.47 Aligned_cols=232 Identities=17% Similarity=0.243 Sum_probs=203.2
Q ss_pred cccccHHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCC-ccccc
Q 019991 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD-PSLFA 93 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~-~~~f~ 93 (332)
+..+..+++++ .+|+|+||+|||||.+..++||+.|+++.|++.|+.+.|+|||+. +++++.++++++|+. ..+ +
T Consensus 10 ~~~~~~~e~l~--~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e-~ 86 (306)
T KOG2882|consen 10 SKSEEARELLD--SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKE-E 86 (306)
T ss_pred hhHHHHHHHHh--hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCc-c
Confidence 33467889999 999999999999999999999999999999999999999999985 678999999999999 664 8
Q ss_pred cccccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccccC-------------------CCCCccEEEEe
Q 019991 94 GAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE-------------------NVEEADFILAH 154 (332)
Q Consensus 94 ~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~-------------------~~~~~~~vv~~ 154 (332)
+|++|..+.+.||++.... +++||++|.... ..+|++.|++... ...++.+||+
T Consensus 87 ~i~ssa~~~a~ylk~~~~~-----~k~Vyvig~~gi-~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvv- 159 (306)
T KOG2882|consen 87 NIFSSAYAIADYLKKRKPF-----GKKVYVIGEEGI-REELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVV- 159 (306)
T ss_pred cccChHHHHHHHHHHhCcC-----CCeEEEecchhh-hHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEE-
Confidence 9999999999999887622 678988886433 2467777764310 1234778999
Q ss_pred cCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcEEEecCCccce-eccceecCCChhHHHHHHh-cCcccccCCCCHHHH
Q 019991 155 GTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTV-EARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWA 232 (332)
Q Consensus 155 ~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~lIaTN~D~~~~-~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if 232 (332)
|+|.+++|.++..++++|.+.++.+++||.|.+.| .++...+++|++++.++.+ +|+|.++|||++.|+
T Consensus 160 ---------g~D~hfsy~KL~kA~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~ 230 (306)
T KOG2882|consen 160 ---------GYDEHFSYPKLMKALNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMF 230 (306)
T ss_pred ---------ecccccCHHHHHHHHHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHH
Confidence 88999999999999999988899999999999887 4454679999999999995 999999999999999
Q ss_pred HHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEE
Q 019991 233 TLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 233 ~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
+..++++++ ++|||||+.|||..|+++|++|+|+
T Consensus 231 ~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLv 268 (306)
T KOG2882|consen 231 EYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLV 268 (306)
T ss_pred HHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEE
Confidence 999999998 7999999999999999999999987
No 3
>PRK10444 UMP phosphatase; Provisional
Probab=100.00 E-value=1.9e-37 Score=286.55 Aligned_cols=213 Identities=19% Similarity=0.273 Sum_probs=187.5
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCccccccccccHHHHHHHHhh
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~ 108 (332)
+++|+||+|||||++.+++||+.+++++|+++|++++++||++. +.+++.++|+++|++..+ ++++||+.+++.||++
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFLRR 79 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-hhEecHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999985 668899999999999885 8999999999999998
Q ss_pred cCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcE
Q 019991 109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM 188 (332)
Q Consensus 109 ~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~l 188 (332)
.. +.++|++|.... ..++++.|+++.+ +++++|++ |+|.+++|+++..+.+.+ ++|+++
T Consensus 80 ~~-------~~~v~~~g~~~l-~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~~~~l~~a~~~l-~~g~~~ 138 (248)
T PRK10444 80 QE-------GKKAYVIGEGAL-IHELYKAGFTITD--INPDFVIV----------GETRSYNWDMMHKAAYFV-ANGARF 138 (248)
T ss_pred CC-------CCEEEEEcCHHH-HHHHHHCcCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHHH-HCCCEE
Confidence 63 467888886432 3467888887653 47789999 567899999999999875 779999
Q ss_pred EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcE
Q 019991 189 VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDL 263 (332)
Q Consensus 189 IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~t 263 (332)
|+||||...+ ++.+++|+++++++.+ |+++...|||+|.+|+.+++++++ ++||||++.+||++|+++|+++
T Consensus 139 i~~n~D~~~~---g~~~~~G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~ 215 (248)
T PRK10444 139 IATNPDTHGR---GFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLET 215 (248)
T ss_pred EEECCCCCCC---CCcCcHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCE
Confidence 9999999754 3568999999999996 888888999999999999999987 6999999989999999999999
Q ss_pred EEEe
Q 019991 264 TVME 267 (332)
Q Consensus 264 i~~~ 267 (332)
+++.
T Consensus 216 vlV~ 219 (248)
T PRK10444 216 ILVL 219 (248)
T ss_pred EEEC
Confidence 9994
No 4
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=100.00 E-value=3.8e-37 Score=284.77 Aligned_cols=218 Identities=17% Similarity=0.248 Sum_probs=193.0
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC-CChhHHHHHHHhCCCCccccccccccHHHHHHHHhh
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s-~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~ 108 (332)
|++|+||+|||||++..++||+.++|++|+++|++++|+|||+ ++.+.+.++|+++|++... ++|++++.++.+||++
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~-~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATL-ETVFTASMATADYMND 79 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEeeHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999987 6778899999999999884 9999999999999998
Q ss_pred cCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcE
Q 019991 109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM 188 (332)
Q Consensus 109 ~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~l 188 (332)
... +++++++|.... ..++++.|+++.+ +++++|++ |++..++|+++..+++.+ ++|+++
T Consensus 80 ~~~------~~~v~~lg~~~l-~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~y~~l~~a~~~l-~~g~~~ 139 (249)
T TIGR01457 80 LKL------EKTVYVIGEEGL-KEAIKEAGYVEDK--EKPDYVVV----------GLDRQIDYEKFATATLAI-RKGAHF 139 (249)
T ss_pred cCC------CCEEEEEcChhH-HHHHHHcCCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHHH-HCCCeE
Confidence 754 467888886432 3477888886543 57889999 567889999999999875 679999
Q ss_pred EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcE
Q 019991 189 VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDL 263 (332)
Q Consensus 189 IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~t 263 (332)
|+||+|..+|..++..+++|++.++++.+ ++++...|||+|.+|+.+++++++ .+||||++.+||.+|+++|+++
T Consensus 140 i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ 219 (249)
T TIGR01457 140 IGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDT 219 (249)
T ss_pred EEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcE
Confidence 99999999997766668999999999985 888999999999999999999987 6999999889999999999999
Q ss_pred EEEec
Q 019991 264 TVMEK 268 (332)
Q Consensus 264 i~~~~ 268 (332)
+|+..
T Consensus 220 v~v~~ 224 (249)
T TIGR01457 220 LLVHT 224 (249)
T ss_pred EEEcC
Confidence 99953
No 5
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=100.00 E-value=5.1e-36 Score=281.48 Aligned_cols=222 Identities=18% Similarity=0.203 Sum_probs=187.7
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCccccccccccHHHHHHHHh
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~ 107 (332)
++++|+||+|||||++..++||+.++|+.|+++|++++++|||+. +..++..+|+++|+.... +++++|+.++..||+
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA-EQLFSSALCAARLLR 79 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEecHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999874 567888999999999885 899999999999999
Q ss_pred hcCChhhhhcCCeEEEeecCcccchhhhcCCccccCC------------------CCCccEEEEecCCCCCCCCCCCccc
Q 019991 108 RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN------------------VEEADFILAHGTEGMGLPSGDVRPM 169 (332)
Q Consensus 108 ~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~------------------~~~~~~vv~~~~~~~~~~~g~d~~~ 169 (332)
+...+ +.+++++|.... ..++++.|++.... .+++++|++ |.|.++
T Consensus 80 ~~~~~-----~~~v~~iG~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv----------~~d~~~ 143 (279)
T TIGR01452 80 QPPDA-----PKAVYVIGEEGL-RAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVV----------GYDEHF 143 (279)
T ss_pred hhCcC-----CCEEEEEcCHHH-HHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEE----------ecCCCC
Confidence 84221 467888886432 34677777764321 136788998 678999
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCccceeccc-eecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~-~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
+|+++.++++.|+++|+++|+||+|..++.... ..++.|.+.+.++.+ |+++...|||+|.+|+.+++++|+ ++
T Consensus 144 ~y~~i~~~l~~L~~~g~~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 144 SYAKLREACAHLREPGCLFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred CHHHHHHHHHHHhcCCCEEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 999999999998778988899999998775443 245677777777774 888888999999999999999987 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEe
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
||||++.+||++|+++||+++++.
T Consensus 224 mIGD~~~tDI~~A~~aGi~si~V~ 247 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMTTVLVL 247 (279)
T ss_pred EECCChHHHHHHHHHcCCcEEEEC
Confidence 999999899999999999999993
No 6
>PLN02645 phosphoglycolate phosphatase
Probab=100.00 E-value=6.6e-36 Score=284.94 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=196.1
Q ss_pred ccccccccHHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCccc
Q 019991 13 HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSL 91 (332)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~~ 91 (332)
.++++.++++++++ +|++|+||+|||||++..++||+.++|++|+++|++++++||++. +.+++.++|+++|++..
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~- 89 (311)
T PLN02645 13 AQLLTLENADELID--SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT- 89 (311)
T ss_pred cccCCHHHHHHHHH--hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC-
Confidence 34468889999999 899999999999999999999999999999999999999999884 66788899999999988
Q ss_pred cccccccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccccC------------------CCCCccEEEE
Q 019991 92 FAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE------------------NVEEADFILA 153 (332)
Q Consensus 92 f~~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~------------------~~~~~~~vv~ 153 (332)
+++|++++..+..||++...+. ++++|++|.... ..+++..|++... ...+.++|++
T Consensus 90 ~~~I~ts~~~~~~~l~~~~~~~----~~~V~viG~~~~-~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~i~aVvv 164 (311)
T PLN02645 90 EEEIFSSSFAAAAYLKSINFPK----DKKVYVIGEEGI-LEELELAGFQYLGGPEDGDKKIELKPGFLMEHDKDVGAVVV 164 (311)
T ss_pred hhhEeehHHHHHHHHHhhccCC----CCEEEEEcCHHH-HHHHHHCCCEEecCccccccccccccccccccCCCCCEEEE
Confidence 4999999999999998753210 356888775322 2466666764321 1134578888
Q ss_pred ecCCCCCCCCCCCcccCHHHHHHHHHHHHh-CCCcEEEecCCccceeccc-eecCCChhHHHHHHh-cCcccccCCCCHH
Q 019991 154 HGTEGMGLPSGDVRPMSLQDLEKILEICAS-KKIPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKL 230 (332)
Q Consensus 154 ~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~-~g~~lIaTN~D~~~~~~~~-~~l~~G~i~~~~e~~-g~e~~~~GKP~p~ 230 (332)
|+|++++|+++..+.+.+.. +|+++|+||+|..++.... ..++.|++.+.++.. ++++..+|||+|.
T Consensus 165 ----------g~d~~~~~~~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~ 234 (311)
T PLN02645 165 ----------GFDRYINYYKIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTF 234 (311)
T ss_pred ----------ecCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHH
Confidence 67899999999999987654 6899999999998754333 357788888877775 7788889999999
Q ss_pred HHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 231 WATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 231 if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
+|+.+++++++ .+||||++.+||++|+++||+++++.
T Consensus 235 ~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~ 275 (311)
T PLN02645 235 MMDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVL 275 (311)
T ss_pred HHHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEc
Confidence 99999999987 69999999899999999999999993
No 7
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=100.00 E-value=1.4e-35 Score=272.83 Aligned_cols=234 Identities=24% Similarity=0.352 Sum_probs=190.3
Q ss_pred HHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc-cccccccccH
Q 019991 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSG 99 (332)
Q Consensus 21 ~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~-~~f~~Iits~ 99 (332)
++++++ +|++|+||+||||+++..++||+.++|++|+++|++++++||++++...+.++|+++|++. . |+.|++++
T Consensus 1 ~~~~~~--~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~-~~~Ii~s~ 77 (242)
T TIGR01459 1 IFDLIN--DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADL-PEMIISSG 77 (242)
T ss_pred Chhhhh--cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccc-cceEEccH
Confidence 467889 9999999999999999999999999999999999999999998877666778999999997 6 68999999
Q ss_pred HHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHH
Q 019991 100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILE 179 (332)
Q Consensus 100 ~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~ 179 (332)
++...++....... -.-+.+++++|.+..+...+++.+....++.+++++|++.+. .+..++|+++.++++
T Consensus 78 ~~~~~~l~~~~~~~-~~~~~~~~~vGd~~~d~~~~~~~~~~~~~~~~~~~~vvv~~~--------~~~~~~~~~~~~~l~ 148 (242)
T TIGR01459 78 EIAVQMILESKKRF-DIRNGIIYLLGHLENDIINLMQCYTTDDENKANASLITIYRS--------ENEKLDLDEFDELFA 148 (242)
T ss_pred HHHHHHHHhhhhhc-cCCCceEEEeCCcccchhhhcCCCccccCCcccCcEEEEcCC--------CcccCCHHHHHHHHH
Confidence 99888876431100 001356787786543334565655543332346777888431 235689999999999
Q ss_pred HHHhCCCcEEEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC-----eEEEeCChhhHHH
Q 019991 180 ICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV-----QMQLESSPYSLLE 254 (332)
Q Consensus 180 ~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~-----~lmIGDs~~~DI~ 254 (332)
.+.++|+++|+||+|..++......++.|.+...++.+|.++...|||+|.+|+.++++++. .+||||++.+||+
T Consensus 149 ~l~~~g~~~i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~ 228 (242)
T TIGR01459 149 PIVARKIPNICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMVGDSFYTDIL 228 (242)
T ss_pred HHHhCCCcEEEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEECCCcHHHHH
Confidence 88888999999999999997655668888888888877778878999999999999999974 5899999889999
Q ss_pred HHHHcCCcEEEE
Q 019991 255 GSMQLNLDLTVM 266 (332)
Q Consensus 255 gA~~aG~~ti~~ 266 (332)
+|+++|++++|+
T Consensus 229 ~a~~~G~~~i~v 240 (242)
T TIGR01459 229 GANRLGIDTALV 240 (242)
T ss_pred HHHHCCCeEEEE
Confidence 999999999997
No 8
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=100.00 E-value=1.1e-33 Score=259.65 Aligned_cols=216 Identities=27% Similarity=0.399 Sum_probs=181.7
Q ss_pred EEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC-CChhHHHHHHHh-CCCCccccccccccHHHHHHHHhhcC
Q 019991 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYLLRRD 110 (332)
Q Consensus 33 vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s-~~~~~~~~~L~~-lGl~~~~f~~Iits~~v~~~~L~~~~ 110 (332)
|+||+||||+++..++||+.++|+.++++|+++.++||++ ++.+++.++|.+ +|++... +++++|+.++..||+++.
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~-~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSP-DQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCH-HHeeeHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999988 677889999998 8999884 999999999999999765
Q ss_pred ChhhhhcCCeEEEeecCcccchhhhcCCccc--cCC------CCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 019991 111 DAWFAALGRSCIHMTWSDRGAISLEGLGLKV--VEN------VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA 182 (332)
Q Consensus 111 ~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~--~~~------~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~ 182 (332)
. |++++++|.+.. ..++++.|++. .++ ...+++|++ |.+.+++|..+..+.+.+
T Consensus 80 ~------~~~v~v~G~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv~----------~~~~~~~~~~~~~a~~~l- 141 (236)
T TIGR01460 80 E------GEKVYVIGVGEL-RESLEGLGFRNDFFDDIDHLAIEKIPAAVIV----------GEPSDFSYDELAKAAYLL- 141 (236)
T ss_pred C------CCEEEEECCHHH-HHHHHHcCCcCcccCcccccccCCCCeEEEE----------CCCCCcCHHHHHHHHHHH-
Confidence 3 567888886432 34788888751 110 122466777 567889999999999865
Q ss_pred hCC-CcEEEecCCccceeccc-eecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----e-EEEeCChhhHHH
Q 019991 183 SKK-IPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----Q-MQLESSPYSLLE 254 (332)
Q Consensus 183 ~~g-~~lIaTN~D~~~~~~~~-~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~-lmIGDs~~~DI~ 254 (332)
+++ +++++||+|..++...+ ..++.|++.+.++.+ ++++...|||+|.+|+.++++++. . +||||++.+||+
T Consensus 142 ~~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~ 221 (236)
T TIGR01460 142 AEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDIL 221 (236)
T ss_pred hCCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHH
Confidence 556 89999999986665555 678899999999986 777778999999999999999986 4 899999889999
Q ss_pred HHHHcCCcEEEEe
Q 019991 255 GSMQLNLDLTVME 267 (332)
Q Consensus 255 gA~~aG~~ti~~~ 267 (332)
+|+++|++++|+.
T Consensus 222 ~A~~~G~~~i~v~ 234 (236)
T TIGR01460 222 GAKNAGFDTLLVL 234 (236)
T ss_pred HHHHCCCcEEEEe
Confidence 9999999999984
No 9
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=100.00 E-value=3.1e-33 Score=259.80 Aligned_cols=213 Identities=16% Similarity=0.225 Sum_probs=178.4
Q ss_pred ccEEEEeccceeecCCc----cCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCccccccccccHHHHHH
Q 019991 30 FKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~----~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~ 104 (332)
+++|+||+|||||++.. ++||+.++|++|+++|++++++||++. +.+++.++|+.+|++..+ ++|+||+++++.
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~-~~i~ts~~~~~~ 79 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISE-DEVFTPAPAARQ 79 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCH-HHeEcHHHHHHH
Confidence 46899999999999988 999999999999999999999999885 557889999999999885 999999999999
Q ss_pred HHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCC-cccCHHHHHHHHHHHHh
Q 019991 105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDV-RPMSLQDLEKILEICAS 183 (332)
Q Consensus 105 ~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d-~~~~y~~l~~~l~~l~~ 183 (332)
||++.+ .++|+++.+.. ..++.+ +. .+++++|++ |.+ .+++|+++.++++.|.+
T Consensus 80 ~l~~~~--------~~~~~~g~~~~-~~~~~~--~~----~~~~~~Vv~----------g~~~~~~~y~~l~~a~~~L~~ 134 (257)
T TIGR01458 80 LLEEKQ--------LRPMLLVDDRV-LPDFDG--ID----TSDPNCVVM----------GLAPEHFSYQILNQAFRLLLD 134 (257)
T ss_pred HHHhcC--------CCeEEEECccH-HHHhcc--CC----CCCCCEEEE----------ecccCccCHHHHHHHHHHHHc
Confidence 999863 35677665322 224442 21 246788888 454 47999999999998877
Q ss_pred CCCc-EEEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHH
Q 019991 184 KKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSM 257 (332)
Q Consensus 184 ~g~~-lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~ 257 (332)
.+.+ +++||+|..++...+..++.|.+.+.++.. +.++...|||+|.+|+.+++++++ .+||||++.+||++|+
T Consensus 135 ~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~ 214 (257)
T TIGR01458 135 GAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQ 214 (257)
T ss_pred CCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHH
Confidence 7766 588999999887665567888888888875 778888899999999999999987 6999999889999999
Q ss_pred HcCCcEEEEec
Q 019991 258 QLNLDLTVMEK 268 (332)
Q Consensus 258 ~aG~~ti~~~~ 268 (332)
++||+++|+..
T Consensus 215 ~~G~~~i~v~~ 225 (257)
T TIGR01458 215 DCGMRGIQVRT 225 (257)
T ss_pred HcCCeEEEECC
Confidence 99999999953
No 10
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=100.00 E-value=3.4e-32 Score=260.49 Aligned_cols=216 Identities=21% Similarity=0.260 Sum_probs=172.3
Q ss_pred EEEEeccceeecCCccCcCHHHHHHHHHHC----CCeEEEEeCCC-CChhHHHHHH-HhCCCCccccccccccHHHHHHH
Q 019991 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSS-RRASTTIDKL-KSLGFDPSLFAGAITSGELTHQY 105 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~----G~~v~~vTN~s-~~~~~~~~~L-~~lGl~~~~f~~Iits~~v~~~~ 105 (332)
+|+||+|||||++..++||+.++++.|++. |+++.++||++ ++.+++.++| +++|++... ++++++..++..+
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~-~~i~~s~~~~~~l 80 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSP-LQVIQSHSPYKSL 80 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCH-HHHHhhhHHHHHH
Confidence 699999999999999999999999999998 99999999987 4667777877 899999885 8999999888777
Q ss_pred HhhcCChhhhhcCCeEEEeecCcccchhhhcCCcccc----------CC-----------------------CCCccEEE
Q 019991 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVV----------EN-----------------------VEEADFIL 152 (332)
Q Consensus 106 L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~----------~~-----------------------~~~~~~vv 152 (332)
+++.. .+++++|.+.. ..+++..|++.. ++ ..++++|+
T Consensus 81 l~~~~--------~~v~viG~~~~-~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv 151 (321)
T TIGR01456 81 VNKYE--------KRILAVGTGSV-RGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVL 151 (321)
T ss_pred HHHcC--------CceEEEeChHH-HHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEE
Confidence 75442 35666665432 235556665411 00 13578888
Q ss_pred EecCCCCCCCCCCCcccCHHHHHHHHHHHHhC----------CCcEEEecCCccceeccc-eecCCChhHHHHHH----h
Q 019991 153 AHGTEGMGLPSGDVRPMSLQDLEKILEICASK----------KIPMVVANPDYVTVEARA-LRVMPGTLASKFEK----L 217 (332)
Q Consensus 153 ~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~----------g~~lIaTN~D~~~~~~~~-~~l~~G~i~~~~e~----~ 217 (332)
+ |.|....|.+++.+.+.+... ++++++||+|..+|...+ +++++|++.++++. +
T Consensus 152 v----------~~d~~~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~ 221 (321)
T TIGR01456 152 V----------FNDPVDWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLEL 221 (321)
T ss_pred E----------ecCchHHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHh
Confidence 8 445666778888888876542 278999999999998777 47899999998887 3
Q ss_pred -cCcc--cccCCCCHHHHHHHHHHh--------C---------CeEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 218 -GGEV--RWMGKPDKLWATLFTMIL--------R---------VQMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 218 -g~e~--~~~GKP~p~if~~Al~~l--------g---------~~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
|+++ ..+|||+|.+|+.|++++ + -++||||++.+||.||+++||+|+++.
T Consensus 222 tg~~~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~ 291 (321)
T TIGR01456 222 NGKPLQYYTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVK 291 (321)
T ss_pred cCCCcceEEcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEec
Confidence 5543 678999999999999887 2 268999999999999999999999995
No 11
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=226.79 Aligned_cols=214 Identities=20% Similarity=0.274 Sum_probs=184.2
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCccccccccccHHHHHHHHh
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~ 107 (332)
.++++++|+-|||+.+..++||+.|+++.|+.++.++.|+||.+. +.+.+.++|+++|+...+ ++|+||..++++|++
T Consensus 6 ~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e-eei~tsl~aa~~~~~ 84 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE-EEIFTSLPAARQYLE 84 (262)
T ss_pred ccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH-HHhcCccHHHHHHHH
Confidence 689999999999999999999999999999999999999999986 557889999999999996 999999999999998
Q ss_pred hcCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCC-C
Q 019991 108 RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKK-I 186 (332)
Q Consensus 108 ~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g-~ 186 (332)
++.- +..+++..+. ...+.+.+ -.++++||++.. .+.|+|+.+.++++.|++.. .
T Consensus 85 ~~~l-------rP~l~v~d~a--~~dF~gid------Ts~pn~VVigla---------pe~F~y~~ln~AFrvL~e~~k~ 140 (262)
T KOG3040|consen 85 ENQL-------RPYLIVDDDA--LEDFDGID------TSDPNCVVIGLA---------PEGFSYQRLNRAFRVLLEMKKP 140 (262)
T ss_pred hcCC-------CceEEEcccc--hhhCCCcc------CCCCCeEEEecC---------cccccHHHHHHHHHHHHcCCCC
Confidence 8753 3444433221 11233221 247889999422 37899999999999888765 4
Q ss_pred cEEEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCC
Q 019991 187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNL 261 (332)
Q Consensus 187 ~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~ 261 (332)
++|+.++-+++.+..++-+++|.+++.++++ |.++.++|||+|.+|+.|++.+|+ .+||||++..|+-||+++||
T Consensus 141 ~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GM 220 (262)
T KOG3040|consen 141 LLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGM 220 (262)
T ss_pred eEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcc
Confidence 5899999999999888889999999999996 999999999999999999999998 59999999999999999999
Q ss_pred cEEEEe
Q 019991 262 DLTVME 267 (332)
Q Consensus 262 ~ti~~~ 267 (332)
+.|++-
T Consensus 221 rgilVk 226 (262)
T KOG3040|consen 221 RGILVK 226 (262)
T ss_pred eeEEee
Confidence 999883
No 12
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.83 E-value=2e-20 Score=150.00 Aligned_cols=100 Identities=30% Similarity=0.464 Sum_probs=83.3
Q ss_pred EEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCC
Q 019991 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD 111 (332)
Q Consensus 33 vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~ 111 (332)
|+||+|||||++.+++|||.|+|++|+++|++++|+|||++ +++++.++|+++|++..+ ++|+||+++++.||+++..
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTT
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999999999985 668999999999999986 9999999999999998643
Q ss_pred hhhhhcCCeEEEeecCcccchhhhcCCcc
Q 019991 112 AWFAALGRSCIHMTWSDRGAISLEGLGLK 140 (332)
Q Consensus 112 ~~~~~~G~~v~~~g~~~~~~~~l~~~g~~ 140 (332)
++++|++|.+.. ..++++.|++
T Consensus 80 ------~~~v~vlG~~~l-~~~l~~~G~e 101 (101)
T PF13344_consen 80 ------GKKVYVLGSDGL-REELREAGFE 101 (101)
T ss_dssp ------SSEEEEES-HHH-HHHHHHTTEE
T ss_pred ------CCEEEEEcCHHH-HHHHHHcCCC
Confidence 678998886432 3477777763
No 13
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=165.64 Aligned_cols=221 Identities=23% Similarity=0.301 Sum_probs=153.9
Q ss_pred EEEEeccceeecCCccCcCHHHHHHHHHHC----CCeEEEEeCCCCCh-hHHHHHHH-hCCCCccccccccccHHHHHHH
Q 019991 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRA-STTIDKLK-SLGFDPSLFAGAITSGELTHQY 105 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~----G~~v~~vTN~s~~~-~~~~~~L~-~lGl~~~~f~~Iits~~v~~~~ 105 (332)
+|.||+||||.+|..++||+.++++.|.+. .+|++++||++... ..-++.|+ .+|....+ ++++.|....+.+
T Consensus 37 gfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~-dqviqSHsP~r~l 115 (389)
T KOG1618|consen 37 GFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSA-DQVIQSHSPFRLL 115 (389)
T ss_pred eEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCH-HHHHhhcChHHHH
Confidence 899999999999999999999999999998 89999999987433 33455664 58999986 8999998888877
Q ss_pred HhhcCChhhhhcCCeEEEeecCcccchhhhcCCccc-----------------------------cC--C-CCCccEEEE
Q 019991 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV-----------------------------VE--N-VEEADFILA 153 (332)
Q Consensus 106 L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~-----------------------------~~--~-~~~~~~vv~ 153 (332)
...++ ..++++|+ ++. ....++.|++- .. + ....++|++
T Consensus 116 ~~~~~-k~vLv~G~-------~~v-r~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv~~ 186 (389)
T KOG1618|consen 116 VEYHY-KRVLVVGQ-------GSV-REVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAVLL 186 (389)
T ss_pred hhhhh-ceEEEecC-------CcH-HHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccchhccccccceeEEEE
Confidence 63333 23344443 221 11233333210 00 0 234566655
Q ss_pred -ecCCCCCCCCCCCcccCHHHHHHHHHHHHhC--------------CCcEEEecCCccceeccc-eecCCChhHHHHH--
Q 019991 154 -HGTEGMGLPSGDVRPMSLQDLEKILEICASK--------------KIPMVVANPDYVTVEARA-LRVMPGTLASKFE-- 215 (332)
Q Consensus 154 -~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~--------------g~~lIaTN~D~~~~~~~~-~~l~~G~i~~~~e-- 215 (332)
.++.+|+ .+++-+++.+... .+|++++|.|..|+.+.+ +++++|++.-.++
T Consensus 187 ~~dPv~W~-----------~dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR~G~GaF~l~lesi 255 (389)
T KOG1618|consen 187 LGDPVRWE-----------TDLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPRFGHGAFRLCLESI 255 (389)
T ss_pred ecCchhhh-----------hhHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCccccchHHHHHHHHH
Confidence 5667776 3444444433222 247899999999998877 6799998765544
Q ss_pred --Hh-cCc--ccccCCCCHHHHHHHHHHhC--------C-----eEEEeCChhhHHHHHH---------------HcCCc
Q 019991 216 --KL-GGE--VRWMGKPDKLWATLFTMILR--------V-----QMQLESSPYSLLEGSM---------------QLNLD 262 (332)
Q Consensus 216 --~~-g~e--~~~~GKP~p~if~~Al~~lg--------~-----~lmIGDs~~~DI~gA~---------------~aG~~ 262 (332)
.+ |.. ...+|||++..|++|...+. . ..||||++.+||.||+ +.||-
T Consensus 256 y~kltGk~L~~~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~ 335 (389)
T KOG1618|consen 256 YQKLTGKPLRYTTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWI 335 (389)
T ss_pred HHHhcCCcccccccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCce
Confidence 44 432 36799999999999976442 1 3699999999999998 67777
Q ss_pred EEEEecchhhHHHHHHHhh
Q 019991 263 LTVMEKLQIYLLFKLLYLN 281 (332)
Q Consensus 263 ti~~~~~~~~~~~~~~~~~ 281 (332)
||++. .|||-+
T Consensus 336 SILV~--------TGV~~~ 346 (389)
T KOG1618|consen 336 SILVR--------TGVYNG 346 (389)
T ss_pred EEEEe--------eeeecC
Confidence 77764 577763
No 14
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.62 E-value=1.4e-15 Score=135.44 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||.+... . . .+...++..+|+.+ +++....+||+|.+|..+++++|+ .+
T Consensus 106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~-~--~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 181 (203)
T TIGR02252 106 VYPDAIKLLKDLRERGLILGVISNFDSRL-R-G--LLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEAL 181 (203)
T ss_pred eCcCHHHHHHHHHHCCCEEEEEeCCchhH-H-H--HHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEE
Confidence 3588999999998889885 889987542 1 1 24445677788875 667778899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEE
Q 019991 244 QLESSPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~ 265 (332)
||||++.+||++|+++||++||
T Consensus 182 ~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 182 HIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred EECCCchHHHHHHHHcCCeeeC
Confidence 9999987899999999999987
No 15
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.61 E-value=2.4e-15 Score=135.43 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||.+...... .+...++..+|+.+ +++....+||+|.+|..+++++|+ ++
T Consensus 95 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRLGIITDGLPVKQWE---KLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeCCchHHHHH---HHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 3578899999998889885 889987543322 24455688888875 777778899999999999999998 59
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
||||++.+||++|+++|+++||++..
T Consensus 172 ~igDs~~~di~~A~~aG~~~i~~~~~ 197 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTVWINQG 197 (221)
T ss_pred EECCChHHHHHHHHHCCCEEEEECCC
Confidence 99999878999999999999999653
No 16
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.60 E-value=6.7e-16 Score=143.85 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEE
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQ 244 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lm 244 (332)
|+++.++++.|+++|+++ |+||........ .+...++..+|+.+ +++....+||+|++|..|++++|+ ++|
T Consensus 111 ~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~---~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~ 187 (260)
T PLN03243 111 RPGSREFVQALKKHEIPIAVASTRPRRYLER---AIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIV 187 (260)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCcCHHHHHH---HHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEE
Confidence 578999999998899985 889976653332 24445688888885 777777899999999999999998 699
Q ss_pred EeCChhhHHHHHHHcCCcEEEEe
Q 019991 245 LESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 245 IGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
|||+ .+||++|+++||++|++.
T Consensus 188 IgDs-~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 188 FGNS-NSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EcCC-HHHHHHHHHcCCEEEEEe
Confidence 9999 589999999999999996
No 17
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.59 E-value=8.6e-16 Score=149.42 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|+++ |+||........ .+...++..+|+.+ +.+....+||+|++|..+++++|+ ++
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~---~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPRKTLEN---AIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 3588999999999999986 889987654432 25555688899985 777778899999999999999997 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||+. .||++|+++||++|++..
T Consensus 294 ~IGDS~-~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 294 VFGNSN-QTVEAAHDARMKCVAVAS 317 (381)
T ss_pred EEcCCH-HHHHHHHHcCCEEEEECC
Confidence 999995 799999999999999963
No 18
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.57 E-value=3.4e-15 Score=135.82 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
..+++.++++.|..+|+++ ++||+.+..... .+..-++..+|+.+ .++....|||+|++|..|++++|+ .+
T Consensus 87 ~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~---~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 87 PIPGVVELLEQLKARGIPLAVASSSPRRAAER---VLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCccHHHHHHHHHhcCCcEEEecCChHHHHHH---HHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 3478999999998899886 566655432221 24455688889884 778888889999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
+|+|++ .+|++|++|||.++.+....
T Consensus 164 viEDs~-~Gi~Aa~aAGm~vv~v~~~~ 189 (221)
T COG0637 164 VVEDSP-AGIQAAKAAGMRVVGVPAGH 189 (221)
T ss_pred EEecch-hHHHHHHHCCCEEEEecCCC
Confidence 999995 78999999999999997533
No 19
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.57 E-value=1.3e-15 Score=140.81 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|+++ |+||........ .+...++..+|+.+ +++....+||+|++|..+++++|+ .+
T Consensus 109 l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~---~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 109 PLNGLYKLKKWIEDRGLKRAAVTNAPRENAEL---MISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred cCccHHHHHHHHHHcCCeEEEEeCCCHHHHHH---HHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 3688999999998999985 899987664432 24455688888885 777777899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||++ .||++|+++|+++|++..
T Consensus 186 ~vgDs~-~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 186 VFEDSV-SGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred EEcCCH-HHHHHHHHCCCEEEEEeC
Confidence 999996 899999999999999953
No 20
>PRK11587 putative phosphatase; Provisional
Probab=99.56 E-value=1.9e-15 Score=136.66 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|+++ |+||........ .+....+ ..++.+ +++....+||+|.+|..+++++|+ .+
T Consensus 84 ~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~---~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 84 ALPGAIALLNHLNKLGIPWAIVTSGSVPVASA---RHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred eCcCHHHHHHHHHHcCCcEEEEcCCCchHHHH---HHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 3688999999998999986 889876532211 1222222 223333 555566789999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||++ .||++|+++|+++|+++.
T Consensus 160 ~igDs~-~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 160 VVEDAP-AGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred EEecch-hhhHHHHHCCCEEEEECC
Confidence 999995 899999999999999964
No 21
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.56 E-value=8.8e-15 Score=134.30 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~-lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++|+.|+++ .+ .|+||.+... ...++..+|+.+ +++....+||+|.+|+.+++++|+ .+
T Consensus 114 ~~~gv~~~L~~L~~~-~~l~i~Tn~~~~~--------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 114 VPQATHDTLKQLAKK-WPLVAITNGNAQP--------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCccHHHHHHHHHcC-CCEEEEECCCchH--------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 467899999988655 56 5889976531 233578888885 777777899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
||||++..||++|+++||+++|+++..
T Consensus 185 ~VGD~~~~Di~~A~~aG~~~i~v~~~~ 211 (238)
T PRK10748 185 HVGDDLTTDVAGAIRCGMQACWINPEN 211 (238)
T ss_pred EEcCCcHHHHHHHHHCCCeEEEEcCCC
Confidence 999998789999999999999998754
No 22
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.54 E-value=7.6e-15 Score=132.35 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhH--HHHHHh-cCcccccCCCCHHHHHHHHHHhCC----
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLA--SKFEKL-GGEVRWMGKPDKLWATLFTMILRV---- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~--~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~---- 241 (332)
.|+++.++++.|+++|+++ |+||........ .+...++. .+|+.+ +.+....+||+|.+|+.+++++|+
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~---~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTGFDRDTAER---LLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCchHHHHH---HHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 3578899999998899985 889876653332 23333455 667764 666667899999999999999986
Q ss_pred -eEEEeCChhhHHHHHHHcCCcE-EEEec
Q 019991 242 -QMQLESSPYSLLEGSMQLNLDL-TVMEK 268 (332)
Q Consensus 242 -~lmIGDs~~~DI~gA~~aG~~t-i~~~~ 268 (332)
++||||++ +||++|+++||.+ +++..
T Consensus 165 ~~~~igD~~-~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 165 SVAVAGDTP-NDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred HeEEeCCCH-HHHHHHHHCCCCeEEEEec
Confidence 49999996 8999999999999 77743
No 23
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.54 E-value=7.9e-15 Score=135.41 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHH-HHh-cCcccccCCCCHHHHHHHHHHhCC-----
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKL-GGEVRWMGKPDKLWATLFTMILRV----- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~-e~~-g~e~~~~GKP~p~if~~Al~~lg~----- 241 (332)
.|+++.++++.|+++|+++ |+||........ .+...++..+| +.+ +++....+||+|++|..+++++|+
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~---~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTGYTREMMDV---VAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECCCcHHHHHH---HHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 3688999999998999985 889876653321 12222344553 554 777777899999999999999996
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
++||||++ +||++|+++|+++|++.
T Consensus 177 ~l~IGDs~-~Di~aA~~aGi~~i~v~ 201 (253)
T TIGR01422 177 CVKVGDTV-PDIEEGRNAGMWTVGLI 201 (253)
T ss_pred eEEECCcH-HHHHHHHHCCCeEEEEe
Confidence 48999996 89999999999999995
No 24
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.53 E-value=8.2e-15 Score=133.68 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEE
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQ 244 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lm 244 (332)
|+++.++++.|+++|.++ |+||........ .+...++..+|+.+ +++....+||+|++|..+++++|+ .+|
T Consensus 97 ~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~ 173 (229)
T PRK13226 97 FDGVEGMLQRLECAGCVWGIVTNKPEYLARL---ILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVY 173 (229)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCCHHHHHH---HHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 578899999998899885 889976543321 23334566677764 666667899999999999999998 699
Q ss_pred EeCChhhHHHHHHHcCCcEEEEe
Q 019991 245 LESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 245 IGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
|||+. +||++|+++|+++|++.
T Consensus 174 IGDs~-~Di~aA~~aG~~~i~v~ 195 (229)
T PRK13226 174 VGDDE-RDILAARAAGMPSVAAL 195 (229)
T ss_pred eCCCH-HHHHHHHHCCCcEEEEe
Confidence 99995 89999999999999884
No 25
>PRK09449 dUMP phosphatase; Provisional
Probab=99.53 E-value=9.8e-15 Score=131.98 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC-----e
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV-----Q 242 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~-----~ 242 (332)
.|+++.++++.|+ ++.++ |+||........ .+..-++..+|+.+ +++.....||+|.+|+.+++++|+ .
T Consensus 96 ~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~---~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 96 PLPGAVELLNALR-GKVKMGIITNGFTELQQV---RLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred cCccHHHHHHHHH-hCCeEEEEeCCcHHHHHH---HHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 3688999999987 56775 889976543322 24455688889885 777777899999999999999985 4
Q ss_pred EEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 243 MQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
+||||++.+||++|+++||+++|++..
T Consensus 172 ~~vgD~~~~Di~~A~~aG~~~i~~~~~ 198 (224)
T PRK09449 172 LMVGDNLHSDILGGINAGIDTCWLNAH 198 (224)
T ss_pred EEEcCCcHHHHHHHHHCCCcEEEECCC
Confidence 899999878999999999999999753
No 26
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.52 E-value=7.8e-15 Score=131.97 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|+++ |+||........ .+...++..+|+.+ +.+....+||+|.+|+.+++++++ ++
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~---~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEM---GLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 3578899999998899985 789976543322 24444577888875 777778899999999999999997 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||++ .||++|+++|++++++..
T Consensus 160 ~iGDs~-~Di~aa~~aG~~~i~v~~ 183 (214)
T PRK13288 160 MVGDNH-HDILAGKNAGTKTAGVAW 183 (214)
T ss_pred EECCCH-HHHHHHHHCCCeEEEEcC
Confidence 999996 899999999999999853
No 27
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.51 E-value=2.3e-14 Score=129.69 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.++++|.++ |+||........ .+...++..+|+.+ +++....+||+|++|+.+++++|+ .+
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGLASASPLHMLEA---VLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHH---HHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 4688999999998999985 888866543332 24445677888875 667777899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
||||++ .|+++|+++|+++|+++.-.
T Consensus 170 ~igDs~-~Di~aA~~aG~~~i~v~~~~ 195 (222)
T PRK10826 170 ALEDSF-NGMIAAKAARMRSIVVPAPE 195 (222)
T ss_pred EEcCCh-hhHHHHHHcCCEEEEecCCc
Confidence 999996 79999999999999997653
No 28
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.51 E-value=5.1e-13 Score=113.82 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=41.0
Q ss_pred cCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 224 MGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 224 ~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.+||+|.+|+.+++++++ .+||||+ ..||++|+++|++++|+++
T Consensus 99 ~~KP~~~~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 99 CRKPKPGLILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVD 146 (147)
T ss_pred CCCCCHHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecC
Confidence 359999999999999998 6999999 7899999999999999986
No 29
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.50 E-value=2e-14 Score=133.96 Aligned_cols=95 Identities=8% Similarity=0.047 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHH-HHh-cCcccccCCCCHHHHHHHHHHhCC-----
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKL-GGEVRWMGKPDKLWATLFTMILRV----- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~-e~~-g~e~~~~GKP~p~if~~Al~~lg~----- 241 (332)
.|+++.++++.|+++|+++ |+||........ .+....+..++ +.+ +++....+||+|++|..+++++|+
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~---~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGYTREMMDV---VVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHH---HHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 3678999999998999985 888876643221 12221233332 443 667777889999999999999996
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
++||||++ +||++|+++|+++|++..
T Consensus 179 ~l~IGDs~-~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 179 CVKVDDTV-PGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred eEEEcCcH-HHHHHHHHCCCEEEEEcc
Confidence 48999996 899999999999999964
No 30
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.50 E-value=2.9e-14 Score=128.72 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.+.++.+..+ .++ +.||........ .+...++..+|+.+ .++.....||+|.+|+.+++++|+ .+
T Consensus 100 ~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~---~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 100 DYPEALEALKELGKK-YKLGILTNGARPHQER---KLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred cChhHHHHHHHHHhh-ccEEEEeCCChHHHHH---HHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 357778888877666 664 889975543332 23333499999995 778788999999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecchhhH
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQIYL 273 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~~~~ 273 (332)
||||++.+||.||+++||++||+++...+.
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~ 205 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPL 205 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCC
Confidence 999999999999999999999999887654
No 31
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.50 E-value=1.5e-14 Score=127.14 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeCC
Q 019991 175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLESS 248 (332)
Q Consensus 175 ~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs 248 (332)
.+.++.+.++ .++ |+||........ .+...++..+|+.+ +++....+||+|++|+.+++++|+ ++||||+
T Consensus 93 ~e~L~~L~~~-~~l~I~T~~~~~~~~~---~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs 168 (188)
T PRK10725 93 IEVVKAWHGR-RPMAVGTGSESAIAEA---LLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDA 168 (188)
T ss_pred HHHHHHHHhC-CCEEEEcCCchHHHHH---HHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEecc
Confidence 3667666544 564 888876544332 24555688888885 777777899999999999999998 6999999
Q ss_pred hhhHHHHHHHcCCcEEEEec
Q 019991 249 PYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 249 ~~~DI~gA~~aG~~ti~~~~ 268 (332)
..|+++|+++|+++|.+.+
T Consensus 169 -~~di~aA~~aG~~~i~~~~ 187 (188)
T PRK10725 169 -DFGIQAARAAGMDAVDVRL 187 (188)
T ss_pred -HhhHHHHHHCCCEEEeecC
Confidence 5899999999999999865
No 32
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.49 E-value=6.4e-14 Score=125.64 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|+++ |+||......... .......+..+|+.+ +++....+||+|.+|+.+++++|+ ++
T Consensus 95 ~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~-~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l 173 (211)
T TIGR02247 95 LRPSMMAAIKTLRAKGFKTACITNNFPTDHSAE-EALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEECV 173 (211)
T ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCCccchhh-hHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 4688999999998899885 7898654321111 012234567778775 666677799999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
||||+ ..||++|+++||++|++....
T Consensus 174 ~i~D~-~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 174 FLDDL-GSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred EEcCC-HHHHHHHHHcCCEEEEECCHH
Confidence 99999 589999999999999997543
No 33
>PLN02940 riboflavin kinase
Probab=99.48 E-value=9.5e-14 Score=136.18 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecC-CChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----e
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVM-PGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----Q 242 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~-~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~ 242 (332)
.|+++.++++.|+++|.++ |+||........ .+. ...+..+|+.+ +++....+||+|.+|..+++++|+ .
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~---~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSPRANIEA---KISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHH---HHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 3578899999999999985 889976553321 232 44577788885 777777899999999999999998 6
Q ss_pred EEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 243 MQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
+||||++ .||++|+++||++|++..
T Consensus 171 l~VGDs~-~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 171 LVIEDSL-PGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred EEEeCCH-HHHHHHHHcCCEEEEECC
Confidence 9999996 799999999999999964
No 34
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.48 E-value=1e-13 Score=124.65 Aligned_cols=94 Identities=20% Similarity=0.162 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCCc-EEEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHh-CC----eE
Q 019991 171 LQDLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMIL-RV----QM 243 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~-lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~l-g~----~l 243 (332)
++++.++++.++++ .+ .++||........ .+...++..+|+.+ +++.....||+|.+|+.+++++ |+ .+
T Consensus 99 ~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~---~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 99 LPGAFELMENLQQK-FRLYIVTNGVRETQYK---RLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CccHHHHHHHHHhc-CcEEEEeCCchHHHHH---HHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 57889999988777 66 4889976543321 24445677888885 7777788899999999999999 87 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||++..||++|+++||++||++.
T Consensus 175 ~igD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred EECCCcHHHHHHHHHCCCcEEEECC
Confidence 9999976899999999999999975
No 35
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.48 E-value=2.1e-13 Score=119.18 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||+... . ..+...++..+|+.+ +++....+||+|++|+.+++++++ .+
T Consensus 88 ~~pg~~~~L~~L~~~g~~~~i~s~~~~~-~----~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v 162 (185)
T TIGR01990 88 VLPGIKNLLDDLKKNNIKIALASASKNA-P----TVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECI 162 (185)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCccH-H----HHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 3688999999998899986 77875431 1 124444677788874 666677899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEE
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
||||++ .|+++|+++||++|.+
T Consensus 163 ~vgD~~-~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 163 GIEDAQ-AGIEAIKAAGMFAVGV 184 (185)
T ss_pred EEecCH-HHHHHHHHcCCEEEec
Confidence 999995 8999999999999986
No 36
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.46 E-value=5.7e-14 Score=122.82 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|.++|.++ ++||. .. .. ..+...++..+|+.+ +++....+||+|.+|+.+++++++ .+
T Consensus 89 ~~~g~~~~l~~l~~~g~~i~i~S~~-~~-~~---~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 89 VLPGIENFLKRLKKKGIAVGLGSSS-KN-AD---RILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCcCHHHHHHHHHHcCCeEEEEeCc-hh-HH---HHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4688999999998889986 77876 21 11 124455677888875 666677899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEE
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
||||+ ..|+++|+++|+++|.+
T Consensus 164 ~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 164 VFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred EEeCc-HhhHHHHHHCCCeEeeC
Confidence 99999 58999999999999874
No 37
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.46 E-value=6.4e-14 Score=125.32 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||........ .+...++..+|+.+ +++....+||+|++|..+++++|+ .+
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNKPTPLARP---LLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 3678899999998899885 889876644332 23444577777774 777777899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEe
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
||||+ ..|+++|+++|++++++.
T Consensus 163 ~igDs-~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 163 YVGDS-RVDIQAARAAGCPSVLLT 185 (213)
T ss_pred EeCCC-HHHHHHHHHCCCeEEEEc
Confidence 99999 589999999999999994
No 38
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.46 E-value=4.7e-14 Score=128.07 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=80.8
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCCe----
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRVQ---- 242 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~~---- 242 (332)
..|+++.++++.|..+|+++ |+||+....... .+...++..+|+.+ |.+.....||+|..+..+++++|+.
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~---~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~ 165 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERELDI---LLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA 165 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHH---HHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhhe
Confidence 35688999999999999985 899977765443 35556788889885 7677888999999999999999984
Q ss_pred EEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 243 MQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
+||||+ ..||++|++||++++.+.--
T Consensus 166 l~VGDs-~~Di~aA~~Ag~~~v~v~~g 191 (220)
T COG0546 166 LMVGDS-LNDILAAKAAGVPAVGVTWG 191 (220)
T ss_pred EEECCC-HHHHHHHHHcCCCEEEEECC
Confidence 999999 58999999999999988653
No 39
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.45 E-value=1.2e-12 Score=108.90 Aligned_cols=45 Identities=9% Similarity=0.063 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHh-CC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 224 MGKPDKLWATLFTMIL-RV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 224 ~GKP~p~if~~Al~~l-g~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
..||+|++|+.+++++ ++ .+||||+...||++|+++|+++||++.
T Consensus 83 ~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 83 CRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred CCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 3599999999999999 47 699999657999999999999999974
No 40
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.45 E-value=1.2e-13 Score=125.75 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||........ .+...++..+|+.+ +++....+||+|++|+.+++++|+ .+
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~---~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAHPHNLAV---KLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHH---HHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 3678999999999999985 889965543322 24445688888875 667777899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEE
Q 019991 244 QLESSPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~ 265 (332)
||||++ .|+++|+++||++++
T Consensus 171 ~igDs~-~di~aA~~aG~~~~~ 191 (224)
T PRK14988 171 FIDDSE-PILDAAAQFGIRYCL 191 (224)
T ss_pred EEcCCH-HHHHHHHHcCCeEEE
Confidence 999996 799999999999754
No 41
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.45 E-value=1.1e-13 Score=124.85 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH-h-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-L-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~-~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
|+++.++++.| +.++ |+||.+...... .+..-++..+|+. + +++....+||+|++|+.+++++|+ ++
T Consensus 90 ~~gv~~~L~~L---~~~~~ivTn~~~~~~~~---~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 90 IAGANALLESI---TVPMCVVSNGPVSKMQH---SLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCCHHHHHHHc---CCCEEEEeCCcHHHHHH---HHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 46788888876 3664 889976543332 2445567888853 3 555667889999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEe
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
||||++ .||++|+++|++++++.
T Consensus 164 ~igDs~-~di~aA~~aG~~~i~~~ 186 (221)
T PRK10563 164 LVDDSS-AGAQSGIAAGMEVFYFC 186 (221)
T ss_pred EEeCcH-hhHHHHHHCCCEEEEEC
Confidence 999996 79999999999999984
No 42
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.43 E-value=1.1e-13 Score=123.66 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||........ .+..-++..+|+.+ +.+....+||+|.+|..+++++|+ ++
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPRARS---LLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 3578899999998899885 889976554332 23444567777774 666667799999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEe
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
||||++ .|+++|+++|++++++.
T Consensus 153 ~igD~~-~Di~aA~~~Gi~~i~~~ 175 (205)
T TIGR01454 153 MVGDAV-TDLASARAAGTATVAAL 175 (205)
T ss_pred EEcCCH-HHHHHHHHcCCeEEEEE
Confidence 999995 89999999999999874
No 43
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.43 E-value=1.4e-13 Score=128.97 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|+++|.++ |+||........ .+..-.+..+|+.+ +++....+||+|.+|+.+++++|+ ++
T Consensus 102 ~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~---~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 102 VYPGVRDTLKWLKKQGVEMALITNKPERFVAP---LLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCcHHHHHH---HHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 4688999999988889885 788865532221 12233466677764 666666789999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEe
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
||||+ ..||++|+++|++++++.
T Consensus 179 ~IGD~-~~Di~aA~~aGi~~i~v~ 201 (272)
T PRK13223 179 FVGDS-RSDVLAAKAAGVQCVALS 201 (272)
T ss_pred EECCC-HHHHHHHHHCCCeEEEEe
Confidence 99999 589999999999999984
No 44
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=1.3e-12 Score=123.32 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCC---hhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC----
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPG---TLASKFEKLGGEVRWMGKPDKLWATLFTMILRV---- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G---~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~---- 241 (332)
.|+++.++++.|+++|+++ |+||........ .+... .+...+..++++....+||+|++|..+++++|+
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~---~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTSNEKAVSK---IVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 4689999999999999986 889975543321 11111 111222223455566789999999999999998
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.+||||++ .||++|+++||++|.+.-
T Consensus 222 ~l~IGDs~-~Di~aA~~aG~~~i~v~~ 247 (286)
T PLN02779 222 CVVVEDSV-IGLQAAKAAGMRCIVTKS 247 (286)
T ss_pred EEEEeCCH-HhHHHHHHcCCEEEEEcc
Confidence 69999996 799999999999999943
No 45
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=116.93 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEE
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQL 245 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmI 245 (332)
++++++++.++.+|..+ +.||-|..... .+..-.+..+|+.+ -+.....-||+|.||+.|++++++ .++|
T Consensus 116 ~~~~~~lq~lR~~g~~l~iisN~d~r~~~----~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhI 191 (237)
T KOG3085|consen 116 DGMQELLQKLRKKGTILGIISNFDDRLRL----LLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHI 191 (237)
T ss_pred cHHHHHHHHHHhCCeEEEEecCCcHHHHH----HhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEe
Confidence 66779999998999654 77998877653 24445677889885 555677889999999999999998 6999
Q ss_pred eCChhhHHHHHHHcCCcEEEEecc
Q 019991 246 ESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 246 GDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
||++.+|++||+++||++++++..
T Consensus 192 gD~l~nD~~gA~~~G~~ailv~~~ 215 (237)
T KOG3085|consen 192 GDLLENDYEGARNLGWHAILVDNS 215 (237)
T ss_pred cCccccccHhHHHcCCEEEEEccc
Confidence 999999999999999999999643
No 46
>PRK06769 hypothetical protein; Validated
Probab=99.40 E-value=4.9e-12 Score=110.80 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=41.2
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
...||+|.+|..+++++++ ++||||++ +||++|+++|+++|++..
T Consensus 90 ~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~-~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 90 ECRKPSTGMLLQAAEKHGLDLTQCAVIGDRW-TDIVAAAKVNATTILVRT 138 (173)
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHeEEEcCCH-HHHHHHHHCCCeEEEEec
Confidence 4469999999999999997 69999996 899999999999999964
No 47
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.39 E-value=4.4e-13 Score=120.86 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.++++.++++.++++|.++ ++||........ .+...++..+|+.+ +.+....+||+|.+|+.+++++++ .+
T Consensus 94 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 94 LYPGVKETLAALKAAGYPLAVVTNKPTPFVAP---LLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 3578899999988889875 888876543321 12233455556654 666667899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEe
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
+|||+. .|+++|+++|++++++.
T Consensus 171 ~igD~~-~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 171 FVGDSR-NDIQAARAAGCPSVGVT 193 (226)
T ss_pred EECCCH-HHHHHHHHCCCcEEEEC
Confidence 999995 89999999999999996
No 48
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.39 E-value=2.1e-13 Score=119.75 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHHHHHHh-cCccccc----CCCCHHHHHHHHHHhCC---
Q 019991 170 SLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWM----GKPDKLWATLFTMILRV--- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~----GKP~p~if~~Al~~lg~--- 241 (332)
.++++.++++.|. +...|+||........ .+..-++..+|+.+ +++.... .||+|.+|+.+++++|+
T Consensus 85 ~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~---~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 85 PDPELRNLLLRLP--GRKIIFTNGDRAHARR---ALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCHHHHHHHHhCC--CCEEEEeCCCHHHHHH---HHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 4688999998764 3346889987654332 23444577788875 5555554 59999999999999998
Q ss_pred -eEEEeCChhhHHHHHHHcCCcEEEE
Q 019991 242 -QMQLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 242 -~lmIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
.+||||++ .||++|+++|+++|++
T Consensus 160 ~~l~vgD~~-~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 160 RAIFFDDSA-RNIAAAKALGMKTVLV 184 (184)
T ss_pred ceEEEeCCH-HHHHHHHHcCCEEeeC
Confidence 58999995 7999999999999985
No 49
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.35 E-value=1.2e-11 Score=100.87 Aligned_cols=126 Identities=27% Similarity=0.276 Sum_probs=91.9
Q ss_pred EEEEeccceeecCC---------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHH
Q 019991 32 AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (332)
Q Consensus 32 ~vlfDlDGvL~~g~---------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~ 102 (332)
+++||+||||+... .++||+.++|+.|+++|++++++||+.+ +.+...++.+|+... ++.++++....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~~~ 77 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSR--REVLELLEELGLDDY-FDPVITSNGAA 77 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchH--HHHHHHHHHcCCchh-hhheeccchhh
Confidence 47999999999998 8899999999999999999999999763 334555666666433 22222211000
Q ss_pred HHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 019991 103 HQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA 182 (332)
Q Consensus 103 ~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~ 182 (332)
.. .. .. . +..
T Consensus 78 ~~-------------------------------------~~--~~------~---------~~~---------------- 87 (139)
T cd01427 78 IY-------------------------------------YP--KE------G---------LFL---------------- 87 (139)
T ss_pred hh-------------------------------------cc--cc------c---------ccc----------------
Confidence 00 00 00 0 000
Q ss_pred hCCCcEEEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHH
Q 019991 183 SKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQ 258 (332)
Q Consensus 183 ~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~ 258 (332)
+......|||++..+..+.+.++. .++|||+. +|++.|++
T Consensus 88 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~ 131 (139)
T cd01427 88 -----------------------------------GGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSL-NDIEMAKA 131 (139)
T ss_pred -----------------------------------cccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCH-HHHHHHHH
Confidence 456678899999999999999887 68999995 89999999
Q ss_pred cCCcEEEE
Q 019991 259 LNLDLTVM 266 (332)
Q Consensus 259 aG~~ti~~ 266 (332)
+|+.++++
T Consensus 132 ~g~~~i~v 139 (139)
T cd01427 132 AGGLGVAV 139 (139)
T ss_pred cCCceeeC
Confidence 99999985
No 50
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.35 E-value=1.3e-11 Score=107.62 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=40.0
Q ss_pred cCccEEEEeccceeecCCc-------------cCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 28 RRFKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~g~~-------------~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
|..+.++||+||||+.... ++||+.++|+.|+++|++++++||++.
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3568999999999998532 579999999999999999999999754
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.34 E-value=3.2e-11 Score=105.67 Aligned_cols=46 Identities=7% Similarity=-0.006 Sum_probs=40.9
Q ss_pred cccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcE-EEEec
Q 019991 222 RWMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDL-TVMEK 268 (332)
Q Consensus 222 ~~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~t-i~~~~ 268 (332)
...+||+|.+|..+++++|+ .+||||++ +||++|+++|+++ +++..
T Consensus 102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~aG~~~~i~v~~ 152 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDKL-EDMQAGVAAKVKTNVLVRT 152 (176)
T ss_pred CCCCCCCHHHHHHHHHHcCcChhhEEEEcCCH-HHHHHHHHCCCcEEEEEec
Confidence 34589999999999999998 69999995 8999999999998 68764
No 52
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.30 E-value=2.1e-12 Score=121.23 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.|+++.++++.|.++|+++ |+||........ .+...++..+|+.+ +.++. +|.|+.|..+++++++ .+
T Consensus 143 l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~---~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p~~~l 216 (273)
T PRK13225 143 LFPGVADLLAQLRSRSLCLGILSSNSRQNIEA---FLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQPAAVM 216 (273)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcChhHEE
Confidence 4688999999998899986 889876654332 23444566777664 43332 3557899999999987 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||++ .||++|+++||++|++..
T Consensus 217 ~IGDs~-~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 217 YVGDET-RDVEAARQVGLIAVAVTW 240 (273)
T ss_pred EECCCH-HHHHHHHHCCCeEEEEec
Confidence 999995 799999999999999853
No 53
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=3.3e-12 Score=139.41 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChh-HHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----e
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTL-ASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----Q 242 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i-~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~ 242 (332)
.|+++.++++.|+++|.++ |+||.+....... +..-++ ..+|+.+ +.+....+||+|++|+.+++++|+ .
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~---L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~ 238 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDAN---LAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSEC 238 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHH---HHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccE
Confidence 4688999999999999985 8899877644321 333345 3567775 777778899999999999999998 5
Q ss_pred EEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 243 MQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
+||||++ .||++|+++||++|++..-
T Consensus 239 v~IgDs~-~Di~AA~~aGm~~I~v~~~ 264 (1057)
T PLN02919 239 VVIEDAL-AGVQAARAAGMRCIAVTTT 264 (1057)
T ss_pred EEEcCCH-HHHHHHHHcCCEEEEECCC
Confidence 9999995 7999999999999999754
No 54
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.29 E-value=3.3e-11 Score=105.92 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=40.5
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
..+||+|.+|+.+++++|+ .+||||++ .||++|+++|+.++++..
T Consensus 100 ~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~aG~~~i~v~~ 148 (181)
T PRK08942 100 DCRKPKPGMLLSIAERLNIDLAGSPMVGDSL-RDLQAAAAAGVTPVLVRT 148 (181)
T ss_pred cCCCCCHHHHHHHHHHcCCChhhEEEEeCCH-HHHHHHHHCCCeEEEEcC
Confidence 4579999999999999998 69999995 799999999999998853
No 55
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.28 E-value=5.6e-12 Score=111.89 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
.++++.++++.|+++|.++ |+||.+...... .+...++..+|+.+ +++....+||+|.+|+.+++++|+ .+
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~---~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSNGSPAMLKS---LVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 3578899999998889985 889987654332 23334577888875 777778899999999999999998 58
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
||||++ .|+++|+++||++||+++..
T Consensus 170 ~vgD~~-~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 170 FVASNP-WDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred EEeCCH-HHHHHHHHCCCcEEEecCCC
Confidence 999997 89999999999999998754
No 56
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.21 E-value=7.2e-12 Score=125.69 Aligned_cols=94 Identities=9% Similarity=-0.077 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC--eEEE
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV--QMQL 245 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~--~lmI 245 (332)
.|+++.+++++|+++|.++ |+||........ .+...++..+|+.+ +.+.. .+||+|++|..++++++. .+||
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~---~l~~~~l~~~f~~i~~~d~v-~~~~kP~~~~~al~~l~~~~~v~V 406 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEYLRA---IVSYYDLDQWVTETFSIEQI-NSLNKSDLVKSILNKYDIKEAAVV 406 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHCCcHhhcceeEecCCC-CCCCCcHHHHHHHHhcCcceEEEE
Confidence 4688999999998899986 899987765443 24555678888885 55543 357888999999999887 7999
Q ss_pred eCChhhHHHHHHHcCCcEEEEec
Q 019991 246 ESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 246 GDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||++ .||++|+++||.+|++..
T Consensus 407 GDs~-~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 407 GDRL-SDINAAKDNGLIAIGCNF 428 (459)
T ss_pred eCCH-HHHHHHHHCCCeEEEEeC
Confidence 9996 899999999999999964
No 57
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.21 E-value=1.5e-11 Score=104.59 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC---eEEEe
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV---QMQLE 246 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~---~lmIG 246 (332)
+++.++++.|.++|.++ |+||.+....... +... +..+|+.+ +.+... +||+|.+|..+++++|+ .+|||
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~---~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~~~l~iG 141 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLL---LRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPPEVLHVG 141 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHH---HHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCCCEEEEe
Confidence 56889999888889885 8899876543321 2222 55566654 666566 99999999999999998 59999
Q ss_pred CChhhHHHHHHHcC
Q 019991 247 SSPYSLLEGSMQLN 260 (332)
Q Consensus 247 Ds~~~DI~gA~~aG 260 (332)
|+ ..|+++|+++|
T Consensus 142 Ds-~~Di~aa~~aG 154 (154)
T TIGR01549 142 DN-LNDIEGARNAG 154 (154)
T ss_pred CC-HHHHHHHHHcc
Confidence 99 68999999997
No 58
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.21 E-value=3e-11 Score=107.37 Aligned_cols=81 Identities=15% Similarity=-0.049 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEEeC
Q 019991 174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQLES 247 (332)
Q Consensus 174 l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmIGD 247 (332)
..++++.|+++|.++ |+||.+...... .+..-++..+|+.+ +.+.... ||+|.+|..+++++|+ ++||||
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~~~~---~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD 186 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKDAAK---FLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVGD 186 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHH---HHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEeC
Confidence 478888888889985 889987654432 24444577888775 5555444 9999999999999998 599999
Q ss_pred ChhhHHHHHHHc
Q 019991 248 SPYSLLEGSMQL 259 (332)
Q Consensus 248 s~~~DI~gA~~a 259 (332)
++ .||++|+++
T Consensus 187 ~~-~Di~aA~~a 197 (197)
T TIGR01548 187 TV-DDIITGRKA 197 (197)
T ss_pred CH-HHHHHHHhC
Confidence 96 799999975
No 59
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.20 E-value=1.4e-10 Score=102.95 Aligned_cols=95 Identities=8% Similarity=-0.055 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHH----HHHHh-cCcccccCCCCHHHHHHHHHHhC--Ce
Q 019991 170 SLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLAS----KFEKL-GGEVRWMGKPDKLWATLFTMILR--VQ 242 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~----~~e~~-g~e~~~~GKP~p~if~~Al~~lg--~~ 242 (332)
.|+++.++++.|++++..+++||+........ ...-++.. +|+.+ +.+. .||+|++|..+++++| ..
T Consensus 75 ~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~---~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~~~~~ 148 (197)
T PHA02597 75 AYDDALDVINKLKEDYDFVAVTALGDSIDALL---NRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYGDRVV 148 (197)
T ss_pred CCCCHHHHHHHHHhcCCEEEEeCCccchhHHH---HhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhCCCcE
Confidence 46889999999877654457788654322111 11222333 33332 3333 4788999999999999 57
Q ss_pred EEEeCChhhHHHHHHHc--CCcEEEEecchh
Q 019991 243 MQLESSPYSLLEGSMQL--NLDLTVMEKLQI 271 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~a--G~~ti~~~~~~~ 271 (332)
+||||+. .|+++|+++ ||++++++.-++
T Consensus 149 v~vgDs~-~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 149 CFVDDLA-HNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred EEeCCCH-HHHHHHHHHHcCCcEEEecchhh
Confidence 8999995 799999999 999999976654
No 60
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.12 E-value=1.2e-10 Score=87.99 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=42.9
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.+|||+|.+|+.|++++++ .+||||++.+||++|+++|++++++..
T Consensus 1 ~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 1 VCGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp SCSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred CCCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 4799999999999999998 699999999999999999999999954
No 61
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.12 E-value=1.5e-10 Score=103.12 Aligned_cols=94 Identities=9% Similarity=0.049 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceec-CCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRV-MPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l-~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
|+++.++++.++++|.++ |+||........ .+ ....+..+|+.+ +++....+||+|++|+.+++++|+ ++
T Consensus 86 ~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~---~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 86 RPEVIAIMHKLREQGHRVVVLSNTNRLHTTF---WPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred CHHHHHHHHHHHhCCCcEEEEcCCchhhHHH---HHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 689999999998899885 889976542211 01 122466778775 777788899999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||++ .||++|+++||+++++..
T Consensus 163 ~vgD~~-~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 163 FFDDNA-DNIEAANALGITSILVTD 186 (199)
T ss_pred EeCCCH-HHHHHHHHcCCEEEEecC
Confidence 999995 799999999999999965
No 62
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.08 E-value=2.2e-10 Score=104.08 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh--c-CcccccCCCCHHHHHHHHHHhCC-----e
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL--G-GEVRWMGKPDKLWATLFTMILRV-----Q 242 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~--g-~e~~~~GKP~p~if~~Al~~lg~-----~ 242 (332)
++++++++.|..+|+|+ ++||.++...... .=..+.+...|... | ......|||+|++|..|++++|. .
T Consensus 95 PGa~kLv~~L~~~gip~alat~s~~~~~~~k--~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~ 172 (222)
T KOG2914|consen 95 PGAEKLVNHLKNNGIPVALATSSTSASFELK--ISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKC 172 (222)
T ss_pred CcHHHHHHHHHhCCCCeeEEecCCcccHHHH--HHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccce
Confidence 68899999999999997 8888755432211 11234466666662 3 34478899999999999999997 4
Q ss_pred EEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 243 MQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
++++|++ ..+++|++|||+.|++..
T Consensus 173 lVfeds~-~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 173 LVFEDSP-VGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred EEECCCH-HHHHHHHhcCCeEEEecC
Confidence 8999996 679999999999999976
No 63
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.07 E-value=3.3e-09 Score=102.86 Aligned_cols=46 Identities=4% Similarity=-0.066 Sum_probs=41.4
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
..+||+|.++..+++++++ .+||||+ .+|+++|+++||++||++..
T Consensus 101 ~~rKP~p~~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 101 SCRKPKTGLVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred CCCCCCHHHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEECC
Confidence 3579999999999999876 6999999 58999999999999999663
No 64
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.05 E-value=1.6e-10 Score=98.63 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEE
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQ 244 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lm 244 (332)
++++.++++.|.++|.++ ++||.+...... .+...++..+|+.+ +++.....||+|.+|+.+++++|+ .++
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~---~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~ 155 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIER---VLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF 155 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHH---HHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred hhhhhhhhhhcccccceeEEeecCCcccccc---cccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence 477899999988889986 789986543322 23334566677764 667777899999999999999998 699
Q ss_pred EeCChhhHHHHHHHcCCcEEEE
Q 019991 245 LESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 245 IGDs~~~DI~gA~~aG~~ti~~ 266 (332)
|||++ .|+++|+++||++||+
T Consensus 156 vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 156 VGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EESSH-HHHHHHHHTTSEEEEE
T ss_pred EeCCH-HHHHHHHHcCCeEEeC
Confidence 99997 8999999999999986
No 65
>PLN02811 hydrolase
Probab=99.01 E-value=5.8e-10 Score=100.98 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCc--ccccCCCCHHHHHHHHHHhC---C-
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGE--VRWMGKPDKLWATLFTMILR---V- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e--~~~~GKP~p~if~~Al~~lg---~- 241 (332)
.|+++.++++.|+++|+++ |+||......... ....+.+..+|+.+ +.+ ....+||+|++|..++++++ +
T Consensus 79 l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~--~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 79 LMPGAERLVRHLHAKGIPIAIATGSHKRHFDLK--TQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCchhhHHHH--HcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 3688999999999999986 8888765322111 12234566777764 555 56678999999999999996 5
Q ss_pred ---eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 242 ---QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 ---~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.+||||++ .|+++|+++|+++|++..
T Consensus 157 ~~~~v~IgDs~-~di~aA~~aG~~~i~v~~ 185 (220)
T PLN02811 157 PGKVLVFEDAP-SGVEAAKNAGMSVVMVPD 185 (220)
T ss_pred ccceEEEeccH-hhHHHHHHCCCeEEEEeC
Confidence 69999995 799999999999999954
No 66
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.00 E-value=5.3e-10 Score=97.10 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEE
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQ 244 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lm 244 (332)
++++.++++.|+++|.++ ++||.+... . . .....++..+|+.+ +++....+||+|.+|+.+++++|+ .+|
T Consensus 87 ~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~-~--~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 87 LPGVEPLLEALRARGKKLALLTNSPRDH-A-V--LVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCchHH-H-H--HHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 578899999988889885 889987754 2 1 12224567778874 666677899999999999999987 699
Q ss_pred EeCChhhHHHHHHHcCCcEEEE
Q 019991 245 LESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 245 IGDs~~~DI~gA~~aG~~ti~~ 266 (332)
|||++ .||++|+++|+++|++
T Consensus 163 vgD~~-~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 163 VDDSP-AGIEAAKAAGMHTVLV 183 (183)
T ss_pred EcCCH-HHHHHHHHcCCEEEeC
Confidence 99996 7999999999999975
No 67
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.98 E-value=2.1e-09 Score=98.84 Aligned_cols=94 Identities=4% Similarity=-0.028 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceec-cceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCCeEEEe
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEA-RALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRVQMQLE 246 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~-~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~~lmIG 246 (332)
.++.+.++++.+.++|.++ |+||++..-+.. -...+...++..+|..+ +++.....||+|. .++++.++.+|||
T Consensus 115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i~i~vG 191 (237)
T TIGR01672 115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNIRIHYG 191 (237)
T ss_pred chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCCeEEEe
Confidence 3466888999998999985 889974321100 00012233455566654 6665556788875 3667888899999
Q ss_pred CChhhHHHHHHHcCCcEEEEe
Q 019991 247 SSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 247 Ds~~~DI~gA~~aG~~ti~~~ 267 (332)
|+. .||.+|+++|+++|.+.
T Consensus 192 Ds~-~DI~aAk~AGi~~I~V~ 211 (237)
T TIGR01672 192 DSD-NDITAAKEAGARGIRIL 211 (237)
T ss_pred CCH-HHHHHHHHCCCCEEEEE
Confidence 995 89999999999999873
No 68
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.96 E-value=3.9e-09 Score=92.19 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=67.5
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHH-HHhcCcc-cccCCCCHHHHHHHHHHhCC----
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKLGGEV-RWMGKPDKLWATLFTMILRV---- 241 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~-e~~g~e~-~~~GKP~p~if~~Al~~lg~---- 241 (332)
..|+++.++++.|+++|.++ |+||.+.. .....+ +..+... ...+||+|.+|..+++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~------------~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGE------------QRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchH------------HHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHHH
Confidence 45789999999999999885 88997521 011111 2233222 23479999999999999998
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.+||||++.+||++|+++|+++||++.
T Consensus 111 ~l~IGDs~~~Di~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRNGSYTILVEP 137 (170)
T ss_pred EEEECCcchHHHHHHHHcCCeEEEEcc
Confidence 699999987899999999999999953
No 69
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.88 E-value=2.6e-09 Score=92.65 Aligned_cols=100 Identities=10% Similarity=-0.024 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccc--eecCCC-hhHHH-------HHH-h-c----CcccccCCCCHHHH
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARA--LRVMPG-TLASK-------FEK-L-G----GEVRWMGKPDKLWA 232 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~--~~l~~G-~i~~~-------~e~-~-g----~e~~~~GKP~p~if 232 (332)
.|+++.++++.|+++|.++ |+||.+........ ....+. .+.+. |+. + + .+.....||+|.+|
T Consensus 30 ~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~ 109 (161)
T TIGR01261 30 FEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLL 109 (161)
T ss_pred ECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHH
Confidence 3688999999999999985 88997532111000 000000 12222 332 1 2 34455679999999
Q ss_pred HHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 233 TLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 233 ~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
+.+++++++ .+||||+ .+|+++|+++|+++++++.-+
T Consensus 110 ~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 110 EPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred HHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhh
Confidence 999999997 6899999 689999999999999996543
No 70
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.87 E-value=5.2e-09 Score=95.32 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=73.4
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC----eE
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV----QM 243 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~----~l 243 (332)
-.|+++.++++.|+++|.++ |+||.+.......-.....+.+..+|+..- +...-+||+|.+|..+++++|+ .+
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~f-d~~~g~KP~p~~y~~i~~~lgv~p~e~l 173 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYF-DTTVGLKTEAQSYVKIAGQLGSPPREIL 173 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEE-EeCcccCCCHHHHHHHHHHhCcChhHEE
Confidence 45789999999999999985 889976543221100112245555555421 1123369999999999999998 69
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
||||+ ..|+++|+++||+++++.+-.
T Consensus 174 fVgDs-~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 174 FLSDI-INELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred EEeCC-HHHHHHHHHcCCEEEEEECCC
Confidence 99999 589999999999999997643
No 71
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.78 E-value=1.9e-07 Score=82.14 Aligned_cols=49 Identities=6% Similarity=-0.152 Sum_probs=42.1
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecchhh
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQIY 272 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~~~ 272 (332)
...||+|.|++.+++++++ .+||||++ +|+++|.++|++++.+.....+
T Consensus 102 ~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~~~~~~ 154 (181)
T COG0241 102 DCRKPKPGMLLSALKEYNIDLSRSYVVGDRL-TDLQAAENAGIKGVLVLTGIGV 154 (181)
T ss_pred cccCCChHHHHHHHHHhCCCccceEEecCcH-HHHHHHHHCCCCceEEEcCccc
Confidence 4569999999999999987 58999995 8999999999998887555443
No 72
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.77 E-value=4.2e-09 Score=94.79 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH--------h-c--CcccccCCCCHHHHHHHHHH
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK--------L-G--GEVRWMGKPDKLWATLFTMI 238 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~--------~-g--~e~~~~GKP~p~if~~Al~~ 238 (332)
++++.++++.++++|.++ |+||........- ...-++...|.. . + ......++|+|.+|+.++++
T Consensus 87 ~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~---l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 163 (219)
T TIGR00338 87 TEGAEELVKTLKEKGYKVAVISGGFDLFAEHV---KDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRK 163 (219)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCcHHHHHHH---HHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHH
Confidence 467888898888889885 7788654332211 111122222221 0 0 11123467899999999999
Q ss_pred hCC----eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 239 LRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 239 lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
+++ +++|||+ .+|+.+|+++|+.. .++-.+
T Consensus 164 ~~~~~~~~i~iGDs-~~Di~aa~~ag~~i-~~~~~~ 197 (219)
T TIGR00338 164 EGISPENTVAVGDG-ANDLSMIKAAGLGI-AFNAKP 197 (219)
T ss_pred cCCCHHHEEEEECC-HHHHHHHHhCCCeE-EeCCCH
Confidence 987 6999999 58999999999975 455433
No 73
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.77 E-value=1.5e-08 Score=86.99 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcc-cccCCCCHHHHHHHHHHhCC----eEEE
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEV-RWMGKPDKLWATLFTMILRV----QMQL 245 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~-~~~GKP~p~if~~Al~~lg~----~lmI 245 (332)
+.+.+-+..++..|+++ |++|....-. +.+++. .|-.. ...+||.+.-|..|++.++. ++||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV---------~~~~~~---l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRV---------ARAAEK---LGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHH---------Hhhhhh---cCCceeecccCccHHHHHHHHHHcCCChhHEEEE
Confidence 67777787888899986 6777433211 112222 22232 24589999999999999998 6899
Q ss_pred eCChhhHHHHHHHcCCcEEEEecch
Q 019991 246 ESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 246 GDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
||++.|||.||+++||.||+++-..
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEEec
Confidence 9999999999999999999986543
No 74
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.63 E-value=7.8e-08 Score=80.12 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=43.5
Q ss_pred cEEEEeccceeecCC-------------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCC
Q 019991 31 KAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~-------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lG 86 (332)
+.++||+|||||++. .++||+.++|++|+++|++++++||++... .....++..|
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~-~~~~~l~~~~ 68 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPH-VAYELLKIFE 68 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHH-HHHHHHHhcc
Confidence 478999999999993 269999999999999999999999984321 1234456666
No 75
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.60 E-value=6.5e-06 Score=76.31 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=48.4
Q ss_pred cCccEEEEeccceeecCC-ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 28 RRFKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~g~-~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.++.+++|+||||++.. .+-|...++|++++++|++++++|..+ ...+...++.+|+..
T Consensus 1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~--~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRH--HVAIHPFYQALALDT 61 (272)
T ss_pred CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCC--hHHHHHHHHhcCCCC
Confidence 358899999999999876 478888999999999999999999754 333455667777653
No 76
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.60 E-value=5.8e-08 Score=91.16 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=63.1
Q ss_pred CccEEEEeccceeecCCcc----CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH
Q 019991 29 RFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~----ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~ 104 (332)
.++.++||+||||.+.+.. -||+.|+|++|+++|++++++||+++.. +.+.|+++|+... |+.|+++++....
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~--v~~~L~~lGLd~Y-FdvIIs~Gdv~~~ 201 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH--VVESMRKVKLDRY-FDIIISGGHKAEE 201 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHcCCCcc-cCEEEECCccccC
Confidence 5789999999999999875 3999999999999999999999987643 4578999999987 7889998887554
No 77
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.54 E-value=9e-08 Score=84.07 Aligned_cols=102 Identities=5% Similarity=-0.066 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecC-Cccceecc--ceec-CCC---hhHHHHHHh-cCcccccCCCCHHHHHHHHHHh--
Q 019991 171 LQDLEKILEICASKKIPM-VVANP-DYVTVEAR--ALRV-MPG---TLASKFEKL-GGEVRWMGKPDKLWATLFTMIL-- 239 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~-D~~~~~~~--~~~l-~~G---~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~l-- 239 (332)
|+++.++++.|+++|.++ |+||. ........ ...+ ..| .+..+|+.+ +.+.....||.+.+++.+.+.+
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~ 126 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPS 126 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccC
Confidence 588999999999999985 88987 33221110 0001 112 233677774 5544445678888888887766
Q ss_pred CC----eEEEeCChhhHHHHHHHcCCcEEEEecchhhH
Q 019991 240 RV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQIYL 273 (332)
Q Consensus 240 g~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~~~~ 273 (332)
|+ ++||||++ .|+++|+++|++++++......-
T Consensus 127 gl~p~e~l~VgDs~-~di~aA~~aGi~~i~v~~g~~~~ 163 (174)
T TIGR01685 127 VLKPAQILFFDDRT-DNVREVWGYGVTSCYCPSGMDKG 163 (174)
T ss_pred CCCHHHeEEEcChh-HhHHHHHHhCCEEEEcCCCccHH
Confidence 45 69999995 79999999999999996654433
No 78
>PLN02954 phosphoserine phosphatase
Probab=98.53 E-value=6.2e-07 Score=80.90 Aligned_cols=92 Identities=9% Similarity=-0.020 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhH--HHHHH---------h-cC---cccccCCCCHHHHHH
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLA--SKFEK---------L-GG---EVRWMGKPDKLWATL 234 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~--~~~e~---------~-g~---e~~~~GKP~p~if~~ 234 (332)
|+++.++++.++++|.++ |+||........- +...++. ..|.. + |. ++...++|+|.++..
T Consensus 86 ~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~---l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 86 SPGIPELVKKLRARGTDVYLVSGGFRQMIAPV---AAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CccHHHHHHHHHHCCCEEEEECCCcHHHHHHH---HHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 477888998888889885 7787665433211 1111121 12210 1 11 112346778899999
Q ss_pred HHHHhCC--eEEEeCChhhHHHHHHHcCCcEEEE
Q 019991 235 FTMILRV--QMQLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 235 Al~~lg~--~lmIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
+++++|. .+||||++ +|+++|+++|++.+..
T Consensus 163 ~~~~~~~~~~i~iGDs~-~Di~aa~~~~~~~~~~ 195 (224)
T PLN02954 163 IKKKHGYKTMVMIGDGA-TDLEARKPGGADLFIG 195 (224)
T ss_pred HHHHcCCCceEEEeCCH-HHHHhhhcCCCCEEEe
Confidence 9998876 79999995 7999999999987654
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.51 E-value=2.5e-07 Score=87.42 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=72.7
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHH-HHHHh-cCc-------ccccCCCCHHHHHHHHH
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLAS-KFEKL-GGE-------VRWMGKPDKLWATLFTM 237 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~-~~e~~-g~e-------~~~~GKP~p~if~~Al~ 237 (332)
...++++.++++.|.++|.++ ++||.+...... .+....+.. +|+.+ +.+ ....+||+|.++..+++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~---~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~ 262 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEED---TVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFW 262 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHH---HHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHH
Confidence 345899999999998999985 889987765432 122223332 55554 555 24468999999999999
Q ss_pred HhCC-----eEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 238 ILRV-----QMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 238 ~lg~-----~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
+++. .+||||+ ..||++|+++|++++++.
T Consensus 263 ~~~~~~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 263 EKIAPKYDVLLAVDDR-DQVVDMWRRIGLECWQVA 296 (300)
T ss_pred HHhccCceEEEEEcCc-HHHHHHHHHhCCeEEEec
Confidence 8765 5899999 589999999999999984
No 80
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.51 E-value=2.5e-07 Score=82.80 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHHHHHHh-cC---c---ccccCCCCHHHHHHHHHHhCC---
Q 019991 172 QDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GG---E---VRWMGKPDKLWATLFTMILRV--- 241 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~---e---~~~~GKP~p~if~~Al~~lg~--- 241 (332)
..+.+++-.+..++ +++.||.++..... .+...++...|+.+ .. . ...+=||++..|+.|.+..|+
T Consensus 103 ~~LRnlLL~l~~r~-k~~FTNa~k~HA~r---~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p 178 (244)
T KOG3109|consen 103 PVLRNLLLSLKKRR-KWIFTNAYKVHAIR---ILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSP 178 (244)
T ss_pred HHHHHHHHhCcccc-EEEecCCcHHHHHH---HHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCc
Confidence 34555554443333 78999999986654 35555789999884 11 2 356779999999999999998
Q ss_pred --eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 242 --QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 242 --~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
++++-|| ..-|++|++.||+++++-+..
T Consensus 179 ~~t~FfDDS-~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 179 RNTYFFDDS-ERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred CceEEEcCc-hhhHHHHHhccceeEEEEeee
Confidence 5899999 578999999999999996655
No 81
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.45 E-value=2e-07 Score=87.72 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=63.6
Q ss_pred CccEEEEeccceeecCCccC----cCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH
Q 019991 29 RFKAWLLDQFGVLHDGKKPY----PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~i----pGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~ 104 (332)
-++.++||+||||......+ ||+.++|++|+++|++++++||+++.. +...|+++|+... |+.+++++....+
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~--v~~~Le~lgL~~y-FDvII~~g~i~~k 203 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH--VVHSLKETKLEGY-FDIIICGGRKAGE 203 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHH--HHHHHHHcCCCcc-ccEEEECCCcccc
Confidence 46799999999999998764 999999999999999999999987643 4568899999877 6888888887776
Q ss_pred H
Q 019991 105 Y 105 (332)
Q Consensus 105 ~ 105 (332)
+
T Consensus 204 ~ 204 (303)
T PHA03398 204 Y 204 (303)
T ss_pred c
Confidence 5
No 82
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.38 E-value=1.8e-07 Score=81.08 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEE
Q 019991 170 SLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQ 244 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lm 244 (332)
.|+++.++++. ..|+||.+...... .+...++..+|+.+ +.+....+||+|++|+.+++++|+ .+|
T Consensus 91 ~~~g~~~~L~~------~~i~Tn~~~~~~~~---~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 91 PWPDSAAALAR------VAILSNASHWAFDQ---FAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCchHHHHHH------HhhhhCCCHHHHHH---HHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 35667777762 34889987764432 24444688888885 677778899999999999999998 699
Q ss_pred EeCChhhHHHHHHHc
Q 019991 245 LESSPYSLLEGSMQL 259 (332)
Q Consensus 245 IGDs~~~DI~gA~~a 259 (332)
|||+ ..||+||+++
T Consensus 162 vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 162 VAAH-QWDLIGARKF 175 (175)
T ss_pred EecC-hhhHHHHhcC
Confidence 9999 5899999874
No 83
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.36 E-value=3.5e-06 Score=85.75 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=42.0
Q ss_pred HHHhhhcCccEEEEeccceeecCC-------------ccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 22 RHIAETRRFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 22 ~~~~~~~~~~~vlfDlDGvL~~g~-------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.++.. +.+.++||+||||.... .++||+.+.|+.|++.|++++|+||.+.
T Consensus 162 ~~~~~--~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 162 AGVKG--QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCcCc--cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 34445 57899999999999743 2689999999999999999999999653
No 84
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.36 E-value=1.4e-06 Score=74.85 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=65.2
Q ss_pred ccEEEEeccceeecCCc-------------cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcccccccc
Q 019991 30 FKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~-------------~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Ii 96 (332)
++.|+||+||||.++.. +.++ .+|++|+++|++++++||+++.. ....++++|+... |+...
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~--~~~~l~~~gi~~~-~~~~~ 75 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL--VEDRCKTLGITHL-YQGQS 75 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH--HHHHHHHcCCCEE-Eeccc
Confidence 47899999999998532 1122 37999999999999999987543 4567889999876 45544
Q ss_pred ccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCc
Q 019991 97 TSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (332)
Q Consensus 97 ts~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~ 139 (332)
...+.....+.+.+.+ ..+++.+|.+..+...++..|+
T Consensus 76 ~k~~~~~~~~~~~~~~-----~~~~~~vGDs~~D~~~~~~ag~ 113 (154)
T TIGR01670 76 NKLIAFSDILEKLALA-----PENVAYIGDDLIDWPVMEKVGL 113 (154)
T ss_pred chHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence 4445555555554321 1356667765443334445444
No 85
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.35 E-value=2.9e-06 Score=74.05 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=64.5
Q ss_pred cCccEEEEeccceeec--CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHH
Q 019991 28 RRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~--g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~ 105 (332)
..++++++|+||||+. ...++||+.++|+.|++.|++++++||++.. ......++.+|+... +...-...+.....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~-~~~~~~~~~~gl~~~-~~~~KP~p~~~~~~ 100 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGE-QRAKAVEKALGIPVL-PHAVKPPGCAFRRA 100 (170)
T ss_pred CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchH-HHHHHHHHHcCCEEE-cCCCCCChHHHHHH
Confidence 4789999999999995 4468999999999999999999999998631 112233467777643 22333444555555
Q ss_pred HhhcCChhhhhcCCeEEEeecCc
Q 019991 106 LLRRDDAWFAALGRSCIHMTWSD 128 (332)
Q Consensus 106 L~~~~~~~~~~~G~~v~~~g~~~ 128 (332)
+++.+.+ .++++++|.+.
T Consensus 101 l~~~~~~-----~~~~l~IGDs~ 118 (170)
T TIGR01668 101 HPEMGLT-----SEQVAVVGDRL 118 (170)
T ss_pred HHHcCCC-----HHHEEEECCcc
Confidence 6555421 24577777643
No 86
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.33 E-value=1.3e-06 Score=76.35 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=71.2
Q ss_pred CccEEEEeccceeecCCccCcCHHH-----------HHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAIS-----------TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e-----------~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iit 97 (332)
++++++||+||||.++.-.+....+ .++.|+++|++++++||++... ....++++|+... |+.+..
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~--~~~~l~~lgi~~~-f~~~kp 82 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA--VRHRAEELKIKRF-HEGIKK 82 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH--HHHHHHHCCCcEE-EecCCC
Confidence 5899999999999999755544433 8999999999999999986543 4567899999876 565544
Q ss_pred cHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCcc
Q 019991 98 SGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK 140 (332)
Q Consensus 98 s~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~ 140 (332)
..+.....+.+.+.. ..+++.+|.+..+...++..|+.
T Consensus 83 kp~~~~~~~~~l~~~-----~~ev~~iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 83 KTEPYAQMLEEMNIS-----DAEVCYVGDDLVDLSMMKRVGLA 120 (169)
T ss_pred CHHHHHHHHHHcCcC-----HHHEEEECCCHHHHHHHHHCCCe
Confidence 445555555555321 13566677654333345555553
No 87
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.25 E-value=7.6e-06 Score=71.38 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=63.6
Q ss_pred cccCHHHHHHHHHHHHhCCCc---EEEecCCccceeccceecCCChhHHHHHHh-cCccc--ccCCCCHHHHHHHHHHhC
Q 019991 167 RPMSLQDLEKILEICASKKIP---MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVR--WMGKPDKLWATLFTMILR 240 (332)
Q Consensus 167 ~~~~y~~l~~~l~~l~~~g~~---lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~--~~GKP~p~if~~Al~~lg 240 (332)
...-++.+.+.++.+++.+.. +|+||........ .+.-++.++.. |-... ...|| .-++.+++.++
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~------~~~~a~~~~~~lgIpvl~h~~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP------DGERAEALEKALGIPVLRHRAKKP--GCFREILKYFK 128 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc------cHHHHHHHHHhhCCcEEEeCCCCC--ccHHHHHHHHh
Confidence 333457888889888776543 6889975443311 12345566663 65543 24688 44555555543
Q ss_pred C---------eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 241 V---------QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 241 ~---------~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
. .+||||++.|||.+|+++|+.+||+.+
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 1 589999999999999999999999964
No 88
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.15 E-value=3.7e-06 Score=73.89 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=53.7
Q ss_pred ccEEEEeccceeecC---------------------------CccCcCHHHHHHHHHHCCCeEEEEeCC-CCChhHHHHH
Q 019991 30 FKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNS-SRRASTTIDK 81 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g---------------------------~~~ipGa~e~L~~L~~~G~~v~~vTN~-s~~~~~~~~~ 81 (332)
.+.++||+|+|+|+. ..++||+.++|+.|+++|++++++||+ +.. .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--~~~~~ 79 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--WAYEI 79 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH--HHHHH
Confidence 478999999999973 267999999999999999999999998 443 23456
Q ss_pred HHhCCCC---------ccccccccccHH
Q 019991 82 LKSLGFD---------PSLFAGAITSGE 100 (332)
Q Consensus 82 L~~lGl~---------~~~f~~Iits~~ 100 (332)
|+.+|+. .. |+.++++.+
T Consensus 80 L~~~~l~~~~~~~~~~~~-Fd~iv~~~~ 106 (174)
T TIGR01685 80 LGTFEITYAGKTVPMHSL-FDDRIEIYK 106 (174)
T ss_pred HHhCCcCCCCCcccHHHh-ceeeeeccC
Confidence 7888887 55 567776643
No 89
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.15 E-value=5e-06 Score=79.98 Aligned_cols=96 Identities=7% Similarity=-0.012 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCC-hhHHHHHHh-----cC--cccccCCCCHHHHHHHHHHhCC
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPG-TLASKFEKL-----GG--EVRWMGKPDKLWATLFTMILRV 241 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G-~i~~~~e~~-----g~--e~~~~GKP~p~if~~Al~~lg~ 241 (332)
++++.++++.+++.|.++ |+|+....+...-...++.- .+...++.. |. .....+||++..+..+++++|+
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi 262 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEI 262 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCC
Confidence 477888888888888885 77776543322100001100 011111110 11 1234579999999999999997
Q ss_pred ----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 242 ----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 ----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
+++|||+. +|+.++++||+..++ |-
T Consensus 263 ~~~qtIaVGDg~-NDl~m~~~AGlgiA~-nA 291 (322)
T PRK11133 263 PLAQTVAIGDGA-NDLPMIKAAGLGIAY-HA 291 (322)
T ss_pred ChhhEEEEECCH-HHHHHHHHCCCeEEe-CC
Confidence 69999995 899999999998776 53
No 90
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.13 E-value=6.6e-06 Score=72.64 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=68.4
Q ss_pred HHHHhhhcCccEEEEeccceeecC-------C-ccCcCHH---HHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 21 LRHIAETRRFKAWLLDQFGVLHDG-------K-KPYPGAI---STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 21 ~~~~~~~~~~~~vlfDlDGvL~~g-------~-~~ipGa~---e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
+.+... .++.|+||+||||.++ . ...+-.. ..++.|+++|++++++||++.. .....++++|+..
T Consensus 14 ~~~~~~--~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~--~v~~~l~~lgl~~ 89 (183)
T PRK09484 14 VMAKAE--NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSK--LVEDRMTTLGITH 89 (183)
T ss_pred HHHHhh--CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHcCCce
Confidence 334445 6999999999999986 2 2222222 5789999999999999997643 3456778899876
Q ss_pred cccccccccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCc
Q 019991 90 SLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (332)
Q Consensus 90 ~~f~~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~ 139 (332)
. |...-.........+++.+.. ...++.+|.+..+...++..|+
T Consensus 90 ~-f~g~~~k~~~l~~~~~~~gl~-----~~ev~~VGDs~~D~~~a~~aG~ 133 (183)
T PRK09484 90 L-YQGQSNKLIAFSDLLEKLAIA-----PEQVAYIGDDLIDWPVMEKVGL 133 (183)
T ss_pred e-ecCCCcHHHHHHHHHHHhCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence 5 443222334444445544321 1356667765544445555555
No 91
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.11 E-value=5.7e-06 Score=76.19 Aligned_cols=94 Identities=5% Similarity=0.029 Sum_probs=63.6
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceecc-ceecCCChh--HHHHHHh-cCcccccCCCCHHHHHHHHHHhCCeE
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEAR-ALRVMPGTL--ASKFEKL-GGEVRWMGKPDKLWATLFTMILRVQM 243 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~-~~~l~~G~i--~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~~l 243 (332)
..|+++.++++.+.++|.++ ++||.+....... .......++ ..++..+ +++. ..||++.- +++++++.+
T Consensus 114 ~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~~i~I 188 (237)
T PRK11009 114 IPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKKNIRI 188 (237)
T ss_pred cchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhcCCeE
Confidence 45688999999998999985 8899753211100 001111223 4444443 3332 37888863 667889999
Q ss_pred EEeCChhhHHHHHHHcCCcEEEEec
Q 019991 244 QLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
||||+. .|+++|++||+++|.+.+
T Consensus 189 ~IGDs~-~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 189 FYGDSD-NDITAAREAGARGIRILR 212 (237)
T ss_pred EEcCCH-HHHHHHHHcCCcEEEEec
Confidence 999995 899999999999998854
No 92
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.10 E-value=1.2e-05 Score=74.07 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=50.4
Q ss_pred EEEEeccceeecCC-----------------------------------ccCcCHHHHHHHHHHCCCeEEEEeCCCC-Ch
Q 019991 32 AWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLATTGAKMVVISNSSR-RA 75 (332)
Q Consensus 32 ~vlfDlDGvL~~g~-----------------------------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~ 75 (332)
+|+||+|||+.++. .++||+.++|+.|+++|++++++||.+. ..
T Consensus 65 av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~ 144 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKT 144 (237)
T ss_pred EEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCccc
Confidence 99999999999732 2567799999999999999999999763 23
Q ss_pred hHHHHHHH-hCCCC--ccccccccccH
Q 019991 76 STTIDKLK-SLGFD--PSLFAGAITSG 99 (332)
Q Consensus 76 ~~~~~~L~-~lGl~--~~~f~~Iits~ 99 (332)
+...+.|. .+|++ .. |..+++++
T Consensus 145 ~~t~~~Llk~~gip~~~~-f~vil~gd 170 (237)
T PRK11009 145 ETVSKTLADDFHIPADNM-NPVIFAGD 170 (237)
T ss_pred HHHHHHHHHHcCCCcccc-eeEEEcCC
Confidence 44555555 59994 43 45555544
No 93
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.09 E-value=8.3e-06 Score=77.02 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=57.6
Q ss_pred ccEEEEeccceeec-------------CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc-cccccc
Q 019991 30 FKAWLLDQFGVLHD-------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGA 95 (332)
Q Consensus 30 ~~~vlfDlDGvL~~-------------g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~-~~f~~I 95 (332)
.+.++||+||||.+ ...++||+.++++.|+++|++++++||++... ....++.+|+.. . |+.+
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~--~~~~l~~l~~~~~~-f~~i 234 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC--EEDTVEWLRQTDIW-FDDL 234 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh--HHHHHHHHHHcCCc-hhhh
Confidence 57899999999998 55789999999999999999999999987533 223445555554 4 5666
Q ss_pred cccHHHHHHHHhhcC
Q 019991 96 ITSGELTHQYLLRRD 110 (332)
Q Consensus 96 its~~v~~~~L~~~~ 110 (332)
++.. ....|++...
T Consensus 235 ~~~~-~~~~~~~~~~ 248 (300)
T PHA02530 235 IGRP-PDMHFQREQG 248 (300)
T ss_pred hCCc-chhhhcccCC
Confidence 6655 4555776643
No 94
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.02 E-value=1.2e-05 Score=75.30 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=50.8
Q ss_pred cCccEEEEeccceeec-CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 28 RRFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~-g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+.++.+++|+||||.+ +....+++.++|++|++.|++++++|+.+. ..+...++.+|+..+
T Consensus 2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~--~~~~~~~~~l~l~~~ 63 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTA--AEVEVLRKELGLEDP 63 (273)
T ss_pred CcceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCCC
Confidence 4689999999999999 556889999999999999999999998653 345567788887643
No 95
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=68.18 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=75.2
Q ss_pred HHhhhcCccEEEEeccceeecCCccCcCHHH-----------HHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccc
Q 019991 23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAIS-----------TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL 91 (332)
Q Consensus 23 ~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e-----------~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~ 91 (332)
+.++ +++..++|+||||.+|.-.+..-.| -|+.|.+.|++++++|. |.+.-+..+.+.+|+...
T Consensus 3 ~ra~--~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITG--r~s~ive~Ra~~LGI~~~- 77 (170)
T COG1778 3 ARAK--NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITG--RDSPIVEKRAKDLGIKHL- 77 (170)
T ss_pred hhhh--hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeC--CCCHHHHHHHHHcCCcee-
Confidence 3455 7999999999999998865554433 57888999999999996 444557789999999977
Q ss_pred cccccccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcCCccc
Q 019991 92 FAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV 141 (332)
Q Consensus 92 f~~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~ 141 (332)
|..+-....+..+.+++.+... +.+..+|.+......|+..|+..
T Consensus 78 ~qG~~dK~~a~~~L~~~~~l~~-----e~~ayiGDD~~Dlpvm~~vGls~ 122 (170)
T COG1778 78 YQGISDKLAAFEELLKKLNLDP-----EEVAYVGDDLVDLPVMEKVGLSV 122 (170)
T ss_pred eechHhHHHHHHHHHHHhCCCH-----HHhhhhcCccccHHHHHHcCCcc
Confidence 6666666666666666554311 12333444444455677777644
No 96
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.99 E-value=1.5e-05 Score=72.78 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=47.3
Q ss_pred EEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.|+||+||||+++....+++.++|++|+++|++++++|+.+ ...+...++.+|+..
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~--~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKT--RAEQEYYREELGVEP 56 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHcCCCC
Confidence 37899999999988888999999999999999999998644 344666778888854
No 97
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.97 E-value=1.7e-05 Score=68.82 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=46.3
Q ss_pred cEEEEeccceeecCC------------ccCcCHHHHHHHHHHCCCeEEEEeCCCC-------------ChhHHHHHHHhC
Q 019991 31 KAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKLKSL 85 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~-------------~~~~~~~~L~~l 85 (332)
++++||-||||.... .++||+.++|++|+++|++++++||++. ....+.+.|+++
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 578999999999832 5789999999999999999999999741 112344557888
Q ss_pred CCC
Q 019991 86 GFD 88 (332)
Q Consensus 86 Gl~ 88 (332)
|+.
T Consensus 82 gl~ 84 (161)
T TIGR01261 82 GII 84 (161)
T ss_pred CCc
Confidence 886
No 98
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.96 E-value=6.7e-05 Score=72.62 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=30.7
Q ss_pred cceeecCC--------ccCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 38 FGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 38 DGvL~~g~--------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
+|.+.... ...||+.++|++|+++|++++++||++..
T Consensus 168 ~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~ 212 (343)
T TIGR02244 168 KGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYD 212 (343)
T ss_pred cchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 56666432 56899999999999999999999998753
No 99
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.95 E-value=0.00037 Score=64.17 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=44.5
Q ss_pred EEEEeccceeec---CC-ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 32 AWLLDQFGVLHD---GK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 32 ~vlfDlDGvL~~---g~-~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
.++.|+||||.+ +. ...|...++++.++++|++++++|.. +..++...++.+++..+
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR--~~~~~~~~~~~~~~~~p 63 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGR--SPHSYKELQKQKPLLTP 63 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCC--CHHHHHHHHhcCCCCCC
Confidence 678899999995 33 56788899999999999999999964 44455566677777654
No 100
>PTZ00445 p36-lilke protein; Provisional
Probab=97.95 E-value=0.00015 Score=65.20 Aligned_cols=48 Identities=6% Similarity=-0.085 Sum_probs=41.6
Q ss_pred ccCCCCHHH--H--HHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecchh
Q 019991 223 WMGKPDKLW--A--TLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQI 271 (332)
Q Consensus 223 ~~GKP~p~i--f--~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~~ 271 (332)
.+-||.|.+ | +.++++.|+ +++|-|+. ..+++|.+.|++++.+...+.
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~-~NVeaA~~lGi~ai~f~~~e~ 209 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDM-NNCKNALKEGYIALHVTGNEG 209 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCH-HHHHHHHHCCCEEEEcCChHh
Confidence 456999999 9 999999998 68999996 579999999999999975544
No 101
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.93 E-value=2.1e-05 Score=71.07 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=47.5
Q ss_pred cCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.++.+++|+||||.+... +-|...++|++|++.|++++++|..+. ..+...++.+|+..
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~ 61 (230)
T PRK01158 1 MKIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVL--CFARAAAKLIGTSG 61 (230)
T ss_pred CceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCCC
Confidence 3578999999999998776 457889999999999999999997553 23444556777753
No 102
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.93 E-value=2.6e-05 Score=72.99 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=54.7
Q ss_pred CccEEEEeccceeecCC---------------------------ccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHH
Q 019991 29 RFKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID 80 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~---------------------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~ 80 (332)
+..+|+||+|+|+.+.. .++||+.++|+.|+++|++++++||++. ..+...+
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~ 153 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK 153 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence 56799999999996422 4679999999999999999999999875 3455678
Q ss_pred HHHhCCCCccccccccc
Q 019991 81 KLKSLGFDPSLFAGAIT 97 (332)
Q Consensus 81 ~L~~lGl~~~~f~~Iit 97 (332)
.|+++|++...++.++.
T Consensus 154 ~Lkk~Gi~~~~~d~lll 170 (266)
T TIGR01533 154 NLKRFGFPQADEEHLLL 170 (266)
T ss_pred HHHHcCcCCCCcceEEe
Confidence 89999998642244444
No 103
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.88 E-value=3.8e-05 Score=63.87 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecC-CccceeccceecCCCh-------hHHHHHHh-cCcccccCCCCHHHHHHHHHHh
Q 019991 170 SLQDLEKILEICASKKIPM-VVANP-DYVTVEARALRVMPGT-------LASKFEKL-GGEVRWMGKPDKLWATLFTMIL 239 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~-D~~~~~~~~~~l~~G~-------i~~~~e~~-g~e~~~~GKP~p~if~~Al~~l 239 (332)
.|+++.++++.|+++|+++ ++||. ....... .+.... +..+|+.+ +++ .||+|.+|..+++++
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~---~l~~~~~~~~i~~l~~~f~~~~~~~----~~pkp~~~~~a~~~l 102 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYE---LLKIFEDFGIIFPLAEYFDPLTIGY----WLPKSPRLVEIALKL 102 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHH---HHHhccccccchhhHhhhhhhhhcC----CCcHHHHHHHHHHHh
Confidence 5899999999999999985 88987 4443322 122223 56777774 443 369999999999999
Q ss_pred C--C----eEEEeCChhhHHHHHHH
Q 019991 240 R--V----QMQLESSPYSLLEGSMQ 258 (332)
Q Consensus 240 g--~----~lmIGDs~~~DI~gA~~ 258 (332)
| + ++||||++ .|+...++
T Consensus 103 g~~~~p~~~l~igDs~-~n~~~~~~ 126 (128)
T TIGR01681 103 NGVLKPKSILFVDDRP-DNNEEVDY 126 (128)
T ss_pred cCCCCcceEEEECCCH-hHHHHHHh
Confidence 9 7 69999995 67776554
No 104
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.86 E-value=4e-05 Score=63.83 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=35.9
Q ss_pred cEEEEeccceeecCC-------ccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 31 KAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~-------~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
++|+||+||||.... .+.+++.+.++.+++.|..++++|..+
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 689999999999753 255788999999999999999999754
No 105
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.85 E-value=1.6e-05 Score=76.36 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=53.2
Q ss_pred CccEEEEeccceeecCC------------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHh----CCCCcccc
Q 019991 29 RFKAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS----LGFDPSLF 92 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~----lGl~~~~f 92 (332)
.++++++|+|+|||.|. .++||+.++|+.|+++|+.++++|||.. +...+.|++ +|+... |
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~--~~a~~~l~~~~~~~~~~~~-f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDE--DDAKKVFERRKDFILQAED-F 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCH--HHHHHHHHhCccccCcHHH-e
Confidence 36899999999999985 4689999999999999999999999865 234566777 777765 4
Q ss_pred ccccc
Q 019991 93 AGAIT 97 (332)
Q Consensus 93 ~~Iit 97 (332)
..+..
T Consensus 79 ~~~~~ 83 (320)
T TIGR01686 79 DARSI 83 (320)
T ss_pred eEEEE
Confidence 54433
No 106
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.78 E-value=4.1e-05 Score=65.21 Aligned_cols=70 Identities=20% Similarity=0.074 Sum_probs=52.3
Q ss_pred ccEEEEeccceeecCC---------------------------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHH
Q 019991 30 FKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~---------------------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L 82 (332)
...+++|+||||.... .++||+.|+|++|+ .+++++++||+++.. ....+
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~--~~~il 78 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY--ADPVL 78 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH--HHHHH
Confidence 4578999999999963 45899999999998 579999999987643 33457
Q ss_pred HhCCCCccccccccccHHHH
Q 019991 83 KSLGFDPSLFAGAITSGELT 102 (332)
Q Consensus 83 ~~lGl~~~~f~~Iits~~v~ 102 (332)
+++|+....|+.++++.+..
T Consensus 79 ~~l~~~~~~f~~i~~~~d~~ 98 (148)
T smart00577 79 DLLDPKKYFGYRRLFRDECV 98 (148)
T ss_pred HHhCcCCCEeeeEEECcccc
Confidence 77887543136666665443
No 107
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.77 E-value=2.4e-05 Score=68.45 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=58.8
Q ss_pred HHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCc-ccccCCCCHHHHHHHHHHhCC----eEEEeCChh
Q 019991 177 ILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGE-VRWMGKPDKLWATLFTMILRV----QMQLESSPY 250 (332)
Q Consensus 177 ~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e-~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~ 250 (332)
+++.|.++|+++ |+||....... ..++..+.. .....||+|..++.+++++++ .++|||++
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~------------~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~- 108 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVR------------HRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDL- 108 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHH------------HHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCH-
Confidence 455678899986 88987554322 222222221 112248999999999999998 69999995
Q ss_pred hHHHHHHHcCCcEEEEecchh
Q 019991 251 SLLEGSMQLNLDLTVMEKLQI 271 (332)
Q Consensus 251 ~DI~gA~~aG~~ti~~~~~~~ 271 (332)
.|+.+++++|+..+--|..+.
T Consensus 109 nDi~~~~~ag~~~am~nA~~~ 129 (169)
T TIGR02726 109 VDLSMMKRVGLAVAVGDAVAD 129 (169)
T ss_pred HHHHHHHHCCCeEECcCchHH
Confidence 899999999998887776543
No 108
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.77 E-value=0.00085 Score=61.17 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=44.2
Q ss_pred EEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.+++|+||||++....++...+.++ ++++|++++++|. |+...+...+..+++..
T Consensus 1 li~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaTG--R~~~~v~~~~~~l~l~~ 55 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIATG--RSVESAKSRYAKLNLPS 55 (236)
T ss_pred CeEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEeC--CCHHHHHHHHHhCCCCC
Confidence 3789999999998877777777777 6889999999996 44556777888888863
No 109
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.77 E-value=5.5e-05 Score=68.02 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=45.5
Q ss_pred ccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
++.|++|+||||++... +-|.+.++|++|++.|++++++|+.+.. .+...++.+++.
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~--~~~~~~~~l~~~ 58 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVP--FARALAVLIGTS 58 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcch--hHHHHHHHhCCC
Confidence 46899999999998765 6689999999999999999999986542 244445666665
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.74 E-value=6.3e-05 Score=69.80 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred cCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.++.+++|+||||++... +-+...++|++++++|++++++|..+. ..+...++.+|+..
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~ 61 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPY--AGVHRYLKELHMEQ 61 (270)
T ss_pred CceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCCh--HHHHHHHHHhCCCC
Confidence 3588999999999999764 557888999999999999999997553 33455667777753
No 111
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.73 E-value=6.7e-05 Score=70.07 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=48.0
Q ss_pred CccEEEEeccceeecCCccC-cCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 29 RFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~i-pGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
+++.|++|+||||++....+ +...++|++|+++|++++++|..+ ...+...++.+|++
T Consensus 6 ~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~~~~l~~~ 64 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKT--AAEMLPLQQTLGLQ 64 (271)
T ss_pred CCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCC--HHHHHHHHHHhCCC
Confidence 68999999999999987655 678899999999999999999755 33455667788874
No 112
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.71 E-value=7.3e-05 Score=64.54 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=38.4
Q ss_pred EEEEeccceeecCC------------ccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 32 AWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 32 ~vlfDlDGvL~~g~------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.|++|+||||.++. ...||+.+++++++++|++++++|..+.
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~ 54 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPI 54 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcH
Confidence 37999999999986 7799999999999999999999998764
No 113
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.70 E-value=8.5e-05 Score=70.17 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=48.0
Q ss_pred ccEEEEeccceeecCC-ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 30 FKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~-~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
++.|++|+||||++.. ..++-+.++|++|+++|+++++.|..+ ..++...++++|+..+
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt--~~ev~~l~~~Lgl~~p 60 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRT--RAQLEHLCRQLRLEHP 60 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHhCCCCe
Confidence 3689999999999955 478889999999999999999999754 3445666678888643
No 114
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.70 E-value=7.7e-05 Score=68.96 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=46.5
Q ss_pred EEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 33 vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
+++|+||||+++.. .++.+.++|+.|++.|++++++|+ |+...+...++.+|+.
T Consensus 2 i~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~Tg--R~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTS--KTAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcC--CCHHHHHHHHHHcCCC
Confidence 78999999999887 788899999999999999999986 4444566778888875
No 115
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.66 E-value=0.00028 Score=61.05 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=68.4
Q ss_pred cHHHHhhhcCccEEEEeccceeecCC--ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccc
Q 019991 20 GLRHIAETRRFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (332)
Q Consensus 20 ~~~~~~~~~~~~~vlfDlDGvL~~g~--~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iit 97 (332)
+...+.. ..++++++|+|-||..-. ..-|.+.+.++.+++.|+++.++||++..+ +....+++|++-. +..---
T Consensus 19 ~~~~L~~-~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R--V~~~~~~l~v~fi-~~A~KP 94 (175)
T COG2179 19 TPDILKA-HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESR--VARAAEKLGVPFI-YRAKKP 94 (175)
T ss_pred CHHHHHH-cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH--HHhhhhhcCCcee-ecccCc
Confidence 3444444 579999999999997644 667888899999999999999999986433 4445677888754 344445
Q ss_pred cHHHHHHHHhhcCChhhhhcCCeEEEeec
Q 019991 98 SGELTHQYLLRRDDAWFAALGRSCIHMTW 126 (332)
Q Consensus 98 s~~v~~~~L~~~~~~~~~~~G~~v~~~g~ 126 (332)
.+......+++.+.+ -+.|..+|.
T Consensus 95 ~~~~fr~Al~~m~l~-----~~~vvmVGD 118 (175)
T COG2179 95 FGRAFRRALKEMNLP-----PEEVVMVGD 118 (175)
T ss_pred cHHHHHHHHHHcCCC-----hhHEEEEcc
Confidence 555666666666543 134555554
No 116
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.66 E-value=9e-05 Score=66.74 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=44.3
Q ss_pred EEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 33 vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
+++|+||||.++.. ..+...++|++|+++|++++++||.+. ..+...++.+|+.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~--~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTA--AEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCC
Confidence 78999999999765 566689999999999999999999664 3345566778875
No 117
>PRK10976 putative hydrolase; Provisional
Probab=97.66 E-value=0.0001 Score=68.31 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=46.8
Q ss_pred ccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
++.+++|+||||++... +-|...++|++++++|++++++|..+. ..+...++.+|+..
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~ 60 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHH--VDVGQIRDNLEIKS 60 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCCC
Confidence 68999999999999765 667788999999999999999997543 33445567777753
No 118
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.62 E-value=0.00012 Score=67.75 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=49.9
Q ss_pred cCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.++.+++|+||||.+... .-+...++|+++++.|++++++|..+. ..+...++.+|+..
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~--~~~~~~~~~l~~~~ 61 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPL--PDVLSILEELGLDG 61 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCh--HHHHHHHHHcCCCc
Confidence 3689999999999999886 667778999999999999999998654 44566777888874
No 119
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.62 E-value=0.00013 Score=67.91 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=47.2
Q ss_pred ccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
++.+++|+||||++... +-+...++|++|+++|++++++|..+ ...+...++.+|+..
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRH--VLEMQHILGALSLDA 60 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHcCCCC
Confidence 68999999999998664 67778899999999999999999754 334556677788753
No 120
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.59 E-value=9.3e-06 Score=69.18 Aligned_cols=86 Identities=7% Similarity=-0.095 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHH-HHHHh-cCcccccCCCCHHHHHHHHHHhCC----e
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLAS-KFEKL-GGEVRWMGKPDKLWATLFTMILRV----Q 242 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~-~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~ 242 (332)
.++++.+.++.|. ++.++ |+||....+.... +..-.+.. .|+.+ +++....+||. |.++++++|. +
T Consensus 46 l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~i---l~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~ 118 (148)
T smart00577 46 KRPGVDEFLKRAS-ELFELVVFTAGLRMYADPV---LDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNV 118 (148)
T ss_pred ECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHH---HHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcE
Confidence 3689999999986 67775 8898877654421 22222322 33554 77888889997 9999999997 6
Q ss_pred EEEeCChhhHHHHHHHcCCcE
Q 019991 243 MQLESSPYSLLEGSMQLNLDL 263 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~t 263 (332)
+||||++ .|++.|+++|+..
T Consensus 119 i~i~Ds~-~~~~aa~~ngI~i 138 (148)
T smart00577 119 IIIDDSP-DSWPFHPENLIPI 138 (148)
T ss_pred EEEECCH-HHhhcCccCEEEe
Confidence 9999995 7999999998764
No 121
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.56 E-value=0.00018 Score=69.07 Aligned_cols=85 Identities=8% Similarity=-0.017 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCC----ChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC---
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMP----GTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV--- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~----G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~--- 241 (332)
.|++++++++.|+++|+++ |+||.+...... .+.. -.+..+|..+ ....||+|..+..+++++|+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~---~l~~~~~~~~~~~~f~~~----~~~~~pk~~~i~~~~~~l~i~~~ 104 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKK---VFERRKDFILQAEDFDAR----SINWGPKSESLRKIAKKLNLGTD 104 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHH---HHHhCccccCcHHHeeEE----EEecCchHHHHHHHHHHhCCCcC
Confidence 4899999999999999986 888887653322 1222 2344455543 12259999999999999987
Q ss_pred -eEEEeCChhhHHHHHHHcCCc
Q 019991 242 -QMQLESSPYSLLEGSMQLNLD 262 (332)
Q Consensus 242 -~lmIGDs~~~DI~gA~~aG~~ 262 (332)
.+||||++ .|++++++++-.
T Consensus 105 ~~vfidD~~-~d~~~~~~~lp~ 125 (320)
T TIGR01686 105 SFLFIDDNP-AERANVKITLPV 125 (320)
T ss_pred cEEEECCCH-HHHHHHHHHCCC
Confidence 69999995 799999997764
No 122
>PTZ00174 phosphomannomutase; Provisional
Probab=97.53 E-value=0.00018 Score=66.44 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=43.9
Q ss_pred cCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH
Q 019991 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (332)
Q Consensus 28 ~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~ 83 (332)
|+++.+++|+||||.++.. +-|...++|++++++|++++++|..+ ...+.+.+.
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~l~ 57 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSD--YPKIKEQLG 57 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHh
Confidence 6799999999999999875 66778899999999999999999754 333444443
No 123
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.50 E-value=0.00017 Score=64.78 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=42.3
Q ss_pred EEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 33 vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
++||+||||+++.. +-|...++|+++++.|++++++|..+. ..+...++.+|++
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~--~~~~~~~~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSV--QFARALAKLIGTP 55 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCC
Confidence 58999999999875 557778999999999999999997543 3344556677754
No 124
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.48 E-value=0.00062 Score=58.35 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=57.1
Q ss_pred HHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcc-cccCCCCHHHHHHHHHHhCC----eEEEeCChh
Q 019991 177 ILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEV-RWMGKPDKLWATLFTMILRV----QMQLESSPY 250 (332)
Q Consensus 177 ~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~-~~~GKP~p~if~~Al~~lg~----~lmIGDs~~ 250 (332)
+++.|+++|.++ |+||...... ...++..|-.. ....||+|..++.+++++|+ ++||||+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~------------~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~vGDs~- 102 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLV------------EDRCKTLGITHLYQGQSNKLIAFSDILEKLALAPENVAYIGDDL- 102 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHH------------HHHHHHcCCCEEEecccchHHHHHHHHHHcCCCHHHEEEECCCH-
Confidence 788888999985 8898654322 22222222221 22348999999999999997 69999995
Q ss_pred hHHHHHHHcCCcEEEEecc
Q 019991 251 SLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 251 ~DI~gA~~aG~~ti~~~~~ 269 (332)
+|+.+++++|+. +.+...
T Consensus 103 ~D~~~~~~ag~~-~~v~~~ 120 (154)
T TIGR01670 103 IDWPVMEKVGLS-VAVADA 120 (154)
T ss_pred HHHHHHHHCCCe-EecCCc
Confidence 899999999997 655433
No 125
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.46 E-value=0.00026 Score=65.22 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=44.8
Q ss_pred EEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.+++|+||||++... +-+...++|++|+++|++++++|+.+. ..+...++.+|+.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~--~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPY--KEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence 378999999999865 557889999999999999999998653 3455566777775
No 126
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.43 E-value=6.3e-05 Score=66.54 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=56.5
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcc---cc--cCCCCHHHHHHHHHHhCC
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEV---RW--MGKPDKLWATLFTMILRV 241 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~---~~--~GKP~p~if~~Al~~lg~ 241 (332)
...++++.++++.|++.|+++ ++|+........ ..+.+|-.. .. .|||+|.+|..+++++++
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~------------~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASA------------IAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHH------------HHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccc------------cccccccccccccccccccccchhHHHHHHHHhc
Confidence 345789999999999999985 666533221111 111112110 00 179999999999999995
Q ss_pred ----eEEEeCChhhHHHHHHHcC
Q 019991 242 ----QMQLESSPYSLLEGSMQLN 260 (332)
Q Consensus 242 ----~lmIGDs~~~DI~gA~~aG 260 (332)
++||||.+ +|+.++++||
T Consensus 194 ~~~~v~~vGDg~-nD~~al~~Ag 215 (215)
T PF00702_consen 194 KPGEVAMVGDGV-NDAPALKAAG 215 (215)
T ss_dssp TGGGEEEEESSG-GHHHHHHHSS
T ss_pred CCCEEEEEccCH-HHHHHHHhCc
Confidence 79999997 8999999997
No 127
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.41 E-value=0.00029 Score=73.38 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=60.4
Q ss_pred cccccCCCCCcccc-ccccHHHHhhhcCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHH
Q 019991 3 AKCSVQSNDPHLFQ-TLNGLRHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTID 80 (332)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~ 80 (332)
+.+++-|.+-++|+ .+.+-...-+ +..+.|++|+||||++... ..+.+.++|+.|+++|++++++|..+. ..+..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~--~~i~~ 465 (694)
T PRK14502 389 LPQMVLPDGELISRAARPSRLPSSG-QFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTM--GEQDL 465 (694)
T ss_pred chheeCCCCCccchhhhcccCCCcC-ceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCH--HHHHH
Confidence 45666777777775 3333333334 4578999999999999654 667789999999999999999997543 34455
Q ss_pred HHHhCCCC
Q 019991 81 KLKSLGFD 88 (332)
Q Consensus 81 ~L~~lGl~ 88 (332)
.++.+|+.
T Consensus 466 l~~~Lgl~ 473 (694)
T PRK14502 466 YRNELGIK 473 (694)
T ss_pred HHHHcCCC
Confidence 56777765
No 128
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.39 E-value=8.2e-05 Score=67.23 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhH--HHH--HH-hcCcccccCCCCHHHH----------HH
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLA--SKF--EK-LGGEVRWMGKPDKLWA----------TL 234 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~--~~~--e~-~g~e~~~~GKP~p~if----------~~ 234 (332)
++++.++++.++++|.++ |+||+...+...- +... +. ..+ +. ..++....+||+|... ..
T Consensus 76 ~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~i---l~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 76 REGFHEFVQFVKENNIPFYVVSGGMDFFVYPL---LQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CcCHHHHHHHHHHcCCeEEEECCCcHHHHHHH---HHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 578899999998999995 8888766543321 1111 11 111 11 1233456678988653 46
Q ss_pred HHHHhCC----eEEEeCChhhHHHHHHHcCCcEE
Q 019991 235 FTMILRV----QMQLESSPYSLLEGSMQLNLDLT 264 (332)
Q Consensus 235 Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti 264 (332)
++++++. .+||||+ .+|+.+|++||+..+
T Consensus 152 ~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 152 LIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVFA 184 (219)
T ss_pred HHHHhccCCCCEEEEeCC-HHHHHHHHHCCccee
Confidence 7777765 6999999 589999999999433
No 129
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.37 E-value=0.00011 Score=64.77 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH-hcCc------cc----ccCCCCHHHHHHHHHH
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-LGGE------VR----WMGKPDKLWATLFTMI 238 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~-~g~e------~~----~~GKP~p~if~~Al~~ 238 (332)
|+++.++++.|+++|.++ |+||........- +...++...+.. +..+ +. .-.+|.+.++..++++
T Consensus 82 ~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~---l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLKTAIVSGGIMCLAKKV---AEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCcHHHHHHH---HHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 577899999988899985 7888655433221 111112222211 0000 00 0012334688888999
Q ss_pred hCC----eEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 239 LRV----QMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 239 lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
+|+ .++|||+ .+|+.+|+++|+..+...
T Consensus 159 ~~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~~ 190 (201)
T TIGR01491 159 LNPSLTETVAVGDS-KNDLPMFEVADISISLGD 190 (201)
T ss_pred hCCCHHHEEEEcCC-HhHHHHHHhcCCeEEECC
Confidence 887 6999999 589999999999776643
No 130
>PLN02887 hydrolase family protein
Probab=97.31 E-value=0.00066 Score=70.22 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=50.6
Q ss_pred cHHHHhhhcCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 20 GLRHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 20 ~~~~~~~~~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
++...-. +++.|++|+||||++... +-+...++|++++++|+.++++|..+ ...+...++.+|+.
T Consensus 300 ~~~~~~~--~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~--~~~i~~~l~~L~l~ 365 (580)
T PLN02887 300 SLRFYKP--KFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKA--RPAVIDILKMVDLA 365 (580)
T ss_pred chhhhcc--CccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHhCcc
Confidence 3444444 799999999999999764 67888999999999999999999754 33445566777765
No 131
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.27 E-value=0.00041 Score=61.20 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC----eEEEeCChh
Q 019991 176 KILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV----QMQLESSPY 250 (332)
Q Consensus 176 ~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~----~lmIGDs~~ 250 (332)
.+++.+.++|+++ |+||........ .+...++..+| .-++|.+..+..+++++|+ .+||||+.
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~---~l~~lgl~~~f--------~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~- 122 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVED---RMTTLGITHLY--------QGQSNKLIAFSDLLEKLAIAPEQVAYIGDDL- 122 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHH---HHHHcCCceee--------cCCCcHHHHHHHHHHHhCCCHHHEEEECCCH-
Confidence 3666677889986 788865432221 01111111111 1246778999999999998 69999995
Q ss_pred hHHHHHHHcCCcEEEEe
Q 019991 251 SLLEGSMQLNLDLTVME 267 (332)
Q Consensus 251 ~DI~gA~~aG~~ti~~~ 267 (332)
.|+.+|+++|+..+ +.
T Consensus 123 ~D~~~a~~aG~~~~-v~ 138 (183)
T PRK09484 123 IDWPVMEKVGLSVA-VA 138 (183)
T ss_pred HHHHHHHHCCCeEe-cC
Confidence 89999999999854 43
No 132
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=97.26 E-value=0.00081 Score=58.72 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=48.6
Q ss_pred cCccEEEEecccee--ecCCccCcCHHHHHHHHHHCCC--eEEEEeCCC-CC---hhHHHHHH-HhCCCCcc
Q 019991 28 RRFKAWLLDQFGVL--HDGKKPYPGAISTLEMLATTGA--KMVVISNSS-RR---ASTTIDKL-KSLGFDPS 90 (332)
Q Consensus 28 ~~~~~vlfDlDGvL--~~g~~~ipGa~e~L~~L~~~G~--~v~~vTN~s-~~---~~~~~~~L-~~lGl~~~ 90 (332)
+.+++++||.|.|| +...++.|...+.++++++.+. +++++|||. +. ...-++.+ +.+|++..
T Consensus 39 ~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl 110 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVL 110 (168)
T ss_pred cCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEE
Confidence 46999999999999 4566889999999999998876 499999985 21 22334455 56888754
No 133
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.19 E-value=0.0003 Score=61.07 Aligned_cols=86 Identities=5% Similarity=-0.025 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cC--------------------cccccCCCCH
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GG--------------------EVRWMGKPDK 229 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~--------------------e~~~~GKP~p 229 (332)
+++.++++.|.++|.++ |+||........ .+...++..+|+.+ +. +....|.+.+
T Consensus 75 ~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~ 151 (188)
T TIGR01489 75 PGFKEFIAFIKEHGIDFIVISDGNDFFIDP---VLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKG 151 (188)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCcHHHHHH---HHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHH
Confidence 56788888888888885 778865543322 12222344455442 22 1234566678
Q ss_pred HHHHHHHHH-hCCeEEEeCChhhHHHHHHHcCC
Q 019991 230 LWATLFTMI-LRVQMQLESSPYSLLEGSMQLNL 261 (332)
Q Consensus 230 ~if~~Al~~-lg~~lmIGDs~~~DI~gA~~aG~ 261 (332)
.+++...+. ..-.++|||+ .+|+.+|+++++
T Consensus 152 ~~~~~~~~~~~~~~i~iGD~-~~D~~aa~~~d~ 183 (188)
T TIGR01489 152 KVIHKLSEPKYQHIIYIGDG-VTDVCPAKLSDV 183 (188)
T ss_pred HHHHHHHhhcCceEEEECCC-cchhchHhcCCc
Confidence 899998887 4457999999 589999999854
No 134
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.19 E-value=0.00072 Score=58.51 Aligned_cols=41 Identities=34% Similarity=0.492 Sum_probs=32.9
Q ss_pred cEEEEeccceeecCC------------ccC-cCHHHHHHHHHHCCCeEEEEeCC
Q 019991 31 KAWLLDQFGVLHDGK------------KPY-PGAISTLEMLATTGAKMVVISNS 71 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~------------~~i-pGa~e~L~~L~~~G~~v~~vTN~ 71 (332)
+..+||+||||.... .++ |++.+.|+.|.+.|+.++++||-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 357899999998752 344 58999999999999999999994
No 135
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.18 E-value=0.00068 Score=60.90 Aligned_cols=54 Identities=33% Similarity=0.420 Sum_probs=43.7
Q ss_pred EEEeccceeecCC-ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 33 WLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 33 vlfDlDGvL~~g~-~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|++|+||||.+.. .+-|...++|+.|+++|.++++.|..+ ...+...+..+++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~--~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRS--YSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSST--HHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCc--ccccccccccccch
Confidence 6899999998854 566788899999999999999999744 34456667777776
No 136
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.17 E-value=0.00031 Score=64.36 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=52.0
Q ss_pred CccEEEEeccceeecC---------------------------CccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHH
Q 019991 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID 80 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g---------------------------~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~ 80 (332)
...+|+||+|+|+.+. ..++||+.++++.++++|..|+++||.+. ..+.-.+
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~ 150 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK 150 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence 6789999999997652 26799999999999999999999999664 3456678
Q ss_pred HHHhCCCCcc
Q 019991 81 KLKSLGFDPS 90 (332)
Q Consensus 81 ~L~~lGl~~~ 90 (332)
.|++.|+...
T Consensus 151 nL~~~G~~~~ 160 (229)
T PF03767_consen 151 NLKKAGFPGW 160 (229)
T ss_dssp HHHHHTTSTB
T ss_pred HHHHcCCCcc
Confidence 8999998763
No 137
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.14 E-value=0.00081 Score=59.60 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=29.2
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
++||+.++|+.|+++ ++++++||+.+.. ....++++|+..
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~--~~~~l~~~gl~~ 108 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEF--AGPLMRQLGWPT 108 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHH--HHHHHHHcCCch
Confidence 478889999999988 8999999876432 334556677653
No 138
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.12 E-value=0.0011 Score=60.39 Aligned_cols=59 Identities=34% Similarity=0.519 Sum_probs=50.0
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~ 104 (332)
.+..++||+.++|+.|+++|+++++.||+++.. +...|+..|+... |+.+++++++...
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~--~~~~L~~~gl~~~-f~~~v~~~dv~~~ 141 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRA--AERVLARLGLLDY-FDVIVTADDVARG 141 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCChHHH--HHHHHHHccChhh-cchhccHHHHhcC
Confidence 456899999999999999999999999987543 4567889999998 7999999887764
No 139
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.12 E-value=0.0011 Score=62.05 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=50.7
Q ss_pred CccEEEEeccceee---------------------c-------CCccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHH
Q 019991 29 RFKAWLLDQFGVLH---------------------D-------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTI 79 (332)
Q Consensus 29 ~~~~vlfDlDGvL~---------------------~-------g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~ 79 (332)
..++++||+|+|+. + ..+++||+.++.+.+++.|.+++++||.+. ..+.-.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 46899999999987 2 235689999999999999999999999764 334557
Q ss_pred HHHHhCCCCcc
Q 019991 80 DKLKSLGFDPS 90 (332)
Q Consensus 80 ~~L~~lGl~~~ 90 (332)
+-|++.|++..
T Consensus 180 ~NL~kaGy~~~ 190 (275)
T TIGR01680 180 ANLKKAGYHTW 190 (275)
T ss_pred HHHHHcCCCCc
Confidence 78899999753
No 140
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.11 E-value=0.0015 Score=58.14 Aligned_cols=55 Identities=25% Similarity=0.359 Sum_probs=44.9
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
....++||+.++|++|+++|++++++||+++.. +...++++|+... |+.++++.+
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~--~~~~l~~~~l~~~-f~~i~~~~~ 126 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPR--ARSLLEALGLLPL-FDHVIGSDE 126 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHcCChhh-eeeEEecCc
Confidence 356889999999999999999999999986543 4567889999877 677777644
No 141
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.11 E-value=0.0012 Score=55.79 Aligned_cols=55 Identities=36% Similarity=0.583 Sum_probs=46.1
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
....++||+.++|+.|++.|++++++||++. +.+...++++|+... |+.++++.+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~--~~~~~~l~~~~~~~~-f~~i~~~~~ 128 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR--ERIERVLERLGLDDY-FDEIISSDD 128 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEH--HHHHHHHHHTTHGGG-CSEEEEGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCc--ccccccccccccccc-cccccccch
Confidence 5668999999999999999999999999853 446678899999976 688887763
No 142
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.09 E-value=0.0012 Score=60.49 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=50.9
Q ss_pred CccEEEEeccceeecC---------------------------CccCcCHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHH
Q 019991 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID 80 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g---------------------------~~~ipGa~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~ 80 (332)
..++++||+|.|+.+. .+++||+.++++.++++|..++++||.+. ..+...+
T Consensus 76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~ 155 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLD 155 (229)
T ss_pred CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 5789999999997762 26789999999999999999999999764 3344567
Q ss_pred HHHhCCCCcc
Q 019991 81 KLKSLGFDPS 90 (332)
Q Consensus 81 ~L~~lGl~~~ 90 (332)
.|++.|++..
T Consensus 156 nL~~~G~~~~ 165 (229)
T TIGR01675 156 NLINAGFTGW 165 (229)
T ss_pred HHHHcCCCCc
Confidence 8889998853
No 143
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.09 E-value=0.0011 Score=61.17 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=46.4
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
...++||+.++|++|+++|++++++||+++. .+...|+++|+... |+.+++++++
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~--~~~~~l~~~gl~~~-Fd~iv~~~~~ 160 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRE--NAELMISLLGLSDF-FQAVIIGSEC 160 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHH--HHHHHHHHcCChhh-CcEEEecCcC
Confidence 4578999999999999999999999998753 35567889999887 7888888754
No 144
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.97 E-value=0.00088 Score=59.14 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=46.0
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
....++||+.++|++|+++|++++++||++. ..+...++++|+... |+.+++++++
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~ 144 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSNGSP--AMLKSLVKHAGLDDP-FDAVLSADAV 144 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHCCChhh-hheeEehhhc
Confidence 3457899999999999999999999999764 335567889999877 6888888653
No 145
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.92 E-value=0.0023 Score=57.70 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=44.6
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
....++||+.++|+.|+++|++++++||+++.. ....++++|+... |+.++++++
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~--~~~~l~~~~l~~~-f~~~~~~~~ 143 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQGLKIGLASASPLHM--LEAVLTMFDLRDY-FDALASAEK 143 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH--HHHHHHhCcchhc-ccEEEEccc
Confidence 356899999999999999999999999976532 4456788999887 677777643
No 146
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.92 E-value=0.0022 Score=56.11 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=39.1
Q ss_pred ccEEEEeccceeecCC--------------------------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH
Q 019991 30 FKAWLLDQFGVLHDGK--------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~--------------------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~ 83 (332)
.+.++||+|+|||.-. .++|++.++|+.|+++|++++++|.+..+ +-..+.|+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P-~~A~~~L~ 81 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP-DWARELLK 81 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H-HHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh-HHHHHHHH
Confidence 5799999999999621 57999999999999999999999965442 33456778
Q ss_pred hCCCC
Q 019991 84 SLGFD 88 (332)
Q Consensus 84 ~lGl~ 88 (332)
.+++.
T Consensus 82 ~l~i~ 86 (169)
T PF12689_consen 82 LLEID 86 (169)
T ss_dssp HTT-C
T ss_pred hcCCC
Confidence 88888
No 147
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.92 E-value=0.00064 Score=58.82 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=59.1
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCcccee--ccceecCCChhHHHHHHhcC--------cccccCCCCHHHHHHHH
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVE--ARALRVMPGTLASKFEKLGG--------EVRWMGKPDKLWATLFT 236 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~--~~~~~l~~G~i~~~~e~~g~--------e~~~~GKP~p~if~~Al 236 (332)
.+-++++.++|+.+.+.|..+ |+||....... .....-...-+...++..+. ......||++-|++.++
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHH
Confidence 445567899999998999885 88997765431 11000000112223332222 12367899999999999
Q ss_pred HHhCC--------eEEEeCC----------hhhHHHHHHHcCCcE
Q 019991 237 MILRV--------QMQLESS----------PYSLLEGSMQLNLDL 263 (332)
Q Consensus 237 ~~lg~--------~lmIGDs----------~~~DI~gA~~aG~~t 263 (332)
+.++. .+||||+ -.+|...|.++|++.
T Consensus 108 ~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 108 KDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 98753 5899995 257999999999974
No 148
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.90 E-value=0.0023 Score=57.23 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=43.9
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
..++||+.++|++|+++|++++++||+++. .+...|+.+|+... |+.++++.+
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~--~~~~~l~~~gl~~~-f~~i~~~~~ 133 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRD--TVEMGLKLTGLDEF-FDVVITLDD 133 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCChhc-eeEEEecCc
Confidence 368999999999999999999999998743 35577899999887 677877543
No 149
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.86 E-value=0.0021 Score=55.43 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=37.0
Q ss_pred EEEeccceeecCC------------ccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 33 vlfDlDGvL~~g~------------~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
|++|+||||..++ ...||+.++...+.++|+++.++|..+
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp 53 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARP 53 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCc
Confidence 7999999999985 577999999999999999999999876
No 150
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.82 E-value=0.0033 Score=55.84 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
...++||+.++|+.|+++|++++++||+++. .....++++|+... |+.++++++
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~ 136 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTP--LARPLLELLGLAKY-FSVLIGGDS 136 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCcHhh-CcEEEecCC
Confidence 3578999999999999999999999997643 35567888999877 677776643
No 151
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.82 E-value=0.00056 Score=61.59 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCC-ChhHHHHH--H-hcCcccccCCCCHHHH----------HHH
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMP-GTLASKFE--K-LGGEVRWMGKPDKLWA----------TLF 235 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~-G~i~~~~e--~-~g~e~~~~GKP~p~if----------~~A 235 (332)
++++.++++.+.++|.++ |+|++...+...- +.. +.....+. . .+......+||+|..+ ..+
T Consensus 72 ~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~i---l~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 72 REGFREFVAFINEHGIPFYVISGGMDFFVYPL---LEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred cccHHHHHHHHHHCCCeEEEECCCcHHHHHHH---HHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 477889999988889985 7777654433211 110 11111111 1 1233456678988776 255
Q ss_pred HHHhCC----eEEEeCChhhHHHHHHHcCCcEEEE
Q 019991 236 TMILRV----QMQLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 236 l~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
+++++. .+||||+ .+|+.+|++||+ ++.
T Consensus 149 l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~--~~a 180 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDS-VTDVEAAKQSDL--CFA 180 (214)
T ss_pred HHHHhhcCCcEEEEeCC-HHHHHHHHhCCe--eEe
Confidence 665543 6999999 589999999998 444
No 152
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.76 E-value=0.0013 Score=58.92 Aligned_cols=54 Identities=31% Similarity=0.433 Sum_probs=44.7
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
...++||+.++|++|+++|++++++||+++. .....++++|+... |+.++++++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~ 145 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPV--KQWEKLERLGVRDF-FDAVITSEE 145 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchH--HHHHHHHhCChHHh-ccEEEEecc
Confidence 3478999999999999999999999998643 24567889999887 688887754
No 153
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.73 E-value=0.0053 Score=52.88 Aligned_cols=51 Identities=35% Similarity=0.522 Sum_probs=40.5
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
..++||+.++|+.|++.|++++++||++... ...+.++|+... |+.++++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~-f~~i~~~~ 134 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDL-FDVVIFSG 134 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHH-CCEEEEcC
Confidence 5789999999999999999999999987543 233445888876 67777654
No 154
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.69 E-value=0.0014 Score=59.59 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=45.4
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
....++||+.++|+.|+++|++++++||+++.. +...++++|+... |+.++++++.
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~-fd~iv~s~~~ 145 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHN--LAVKLEHTGLDAH-LDLLLSTHTF 145 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH--HHHHHHHCCcHHH-CCEEEEeeeC
Confidence 345789999999999999999999999986533 4456888999877 6888877643
No 155
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.69 E-value=0.0037 Score=56.41 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=31.9
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhC
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~l 85 (332)
....++||+.++|++|+++|++++++||+.+.. +...|+++
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~--i~~il~~~ 111 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFF--VYPLLQGL 111 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH--HHHHHHHh
Confidence 345789999999999999999999999986532 33445555
No 156
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.67 E-value=0.0034 Score=61.76 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=44.8
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
.++||+.++|+.|+++|++++++||+++. .+...|+++|+... |+.++++.++
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~--~~~~~L~~lgL~~y-Fd~Iv~sddv 268 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRK--TLENAIGSIGIRGF-FSVIVAAEDV 268 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCHHH-ceEEEecCcC
Confidence 46899999999999999999999998743 35567889999888 7888887764
No 157
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.66 E-value=0.0023 Score=56.76 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=36.3
Q ss_pred EEEeccceeecCC--ccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 33 WLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 33 vlfDlDGvL~~g~--~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
+++|+||||.+.. ++-+.+.++|+.|++.|.+++++|+.+.
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~ 44 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSL 44 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCH
Confidence 7899999999864 5778899999999999999999998664
No 158
>PRK11587 putative phosphatase; Provisional
Probab=96.64 E-value=0.0092 Score=53.66 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=41.6
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
....++||+.++|+.|+++|++++++||+++.. ....++..|+.. ++.++++++
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~--~~~~l~~~~l~~--~~~i~~~~~ 133 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPV--ASARHKAAGLPA--PEVFVTAER 133 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchH--HHHHHHhcCCCC--ccEEEEHHH
Confidence 355789999999999999999999999987542 345677888853 356666654
No 159
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.60 E-value=0.0058 Score=52.93 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
...++||+.++|+.|++.|++++++||+ ......|+++|+... |+.++++.+
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~----~~~~~~l~~~~l~~~-f~~v~~~~~ 137 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS----KNADRILAKLGLTDY-FDAIVDADE 137 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc----hhHHHHHHHcChHHH-CCEeeehhh
Confidence 4689999999999999999999999997 234567888999877 677777653
No 160
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.57 E-value=0.0036 Score=58.60 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=41.8
Q ss_pred ccEEEEeccceeec------CCccCcCHHHHHHHHHH-CCCeEEEEeCCCCChhHHHHHHHhCC
Q 019991 30 FKAWLLDQFGVLHD------GKKPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG 86 (332)
Q Consensus 30 ~~~vlfDlDGvL~~------g~~~ipGa~e~L~~L~~-~G~~v~~vTN~s~~~~~~~~~L~~lG 86 (332)
-..+++|+||||.+ ...+-|...+.|+.|.+ .|.+++++|..+ ...+.+.++.++
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~--~~~~~~~~~~~~ 75 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRS--MVELDALAKPYR 75 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHhcCccc
Confidence 35899999999998 34677899999999998 799999999754 333444444443
No 161
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.55 E-value=0.0026 Score=59.38 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=45.3
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
...++||+.++|+.|+++|++++++||+++. .+...++++|+... |+.++++.++
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~--~~~~~l~~~gl~~~-Fd~ii~~~d~ 161 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRR--YLERAIEAVGMEGF-FSVVLAAEDV 161 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHH--HHHHHHHHcCCHhh-CcEEEecccC
Confidence 3568999999999999999999999998753 24567888999887 6888887643
No 162
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.51 E-value=0.0063 Score=52.72 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
...++||+.++|++|+++|++++++||+.. ....|+++|+... |+.++++.+.
T Consensus 85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~----~~~~l~~~~l~~~-f~~~~~~~~~ 137 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNNIKIALASASKN----APTVLEKLGLIDY-FDAIVDPAEI 137 (185)
T ss_pred CcccCccHHHHHHHHHHCCCeEEEEeCCcc----HHHHHHhcCcHhh-CcEEEehhhc
Confidence 347899999999999999999999998643 1246889999877 6888877643
No 163
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.48 E-value=0.0048 Score=56.11 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=40.6
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
.++||+.++|++|+++|++++++||++.. .....++++|+... |+.++++.
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~--~~~~~l~~~~l~~~-f~~i~~~~ 145 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEY--LARLILPQLGWEQR-CAVLIGGD 145 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHH--HHHHHHHHcCchhc-ccEEEecC
Confidence 57999999999999999999999998653 23456788998876 56666554
No 164
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.46 E-value=0.008 Score=56.50 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=42.9
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcccccccccc
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits 98 (332)
...+++||+.++|+.|+++|++++++||+++. .+...|+++|+... |+.++++
T Consensus 139 ~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~--~~~~~L~~~gl~~~-F~~vi~~ 191 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRSLCLGILSSNSRQ--NIEAFLQRQGLRSL-FSVVQAG 191 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCChhh-eEEEEec
Confidence 34578999999999999999999999998653 35567889999877 5666554
No 165
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.38 E-value=0.0041 Score=55.74 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=44.2
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC--ccccccccccHHH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD--PSLFAGAITSGEL 101 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~--~~~f~~Iits~~v 101 (332)
.+++||+.++|+.|+++|++++++||++... ....|+++|+. .. |+.++++++.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~--~~~~l~~~~l~~~~~-f~~i~~~~~~ 141 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT--AERLLEKLGWTVGDD-VDAVVCPSDV 141 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHHhhhhhhcc-CCEEEcCCcC
Confidence 4799999999999999999999999987543 44677888987 65 6778887653
No 166
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.36 E-value=0.0087 Score=60.28 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=44.4
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
..++||+.++|++|+++|++++++||+++.. ....++++|+... |+.+++++++
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~--~~~~l~~~~l~~~-f~~i~~~d~v 382 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEY--LRAIVSYYDLDQW-VTETFSIEQI 382 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHCCcHhh-cceeEecCCC
Confidence 4689999999999999999999999987533 4567889999877 6777776543
No 167
>PLN02940 riboflavin kinase
Probab=96.36 E-value=0.0073 Score=59.51 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=44.7
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH-hCCCCccccccccccHHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~-~lGl~~~~f~~Iits~~v 101 (332)
....++||+.++|+.|+++|++++++||+++.. +...++ ..|+... |+.+++++++
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~--~~~~l~~~~gl~~~-Fd~ii~~d~v 146 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHGVPMALASNSPRAN--IEAKISCHQGWKES-FSVIVGGDEV 146 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH--HHHHHHhccChHhh-CCEEEehhhc
Confidence 345789999999999999999999999986533 345666 6888877 6888887764
No 168
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.31 E-value=0.0047 Score=54.64 Aligned_cols=51 Identities=37% Similarity=0.393 Sum_probs=42.7
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
.++||+.++|++|++.|++++++||++.. +...++++|+... |+.++++.+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~---~~~~l~~~~l~~~-fd~i~~s~~ 155 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR---LRGLLEALGLLEY-FDFVVTSYE 155 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHCCcHHh-cceEEeecc
Confidence 68999999999999999999999997542 3467888999877 688887764
No 169
>PLN02423 phosphomannomutase
Probab=96.28 E-value=0.0074 Score=55.72 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.4
Q ss_pred CccEEE-EeccceeecCCccC-cCHHHHHHHHHHCCCeEEEEeCC
Q 019991 29 RFKAWL-LDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNS 71 (332)
Q Consensus 29 ~~~~vl-fDlDGvL~~g~~~i-pGa~e~L~~L~~~G~~v~~vTN~ 71 (332)
+++.++ ||+||||.++...+ |...++|++|++. ++++++|..
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTGR 48 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGGS 48 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECCc
Confidence 566555 99999999988644 5668999999976 999999975
No 170
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.27 E-value=0.017 Score=49.45 Aligned_cols=93 Identities=16% Similarity=0.025 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHh---CCCcEEEecCCccceeccceecCCChhHHHHHH-hcCccc--ccCCC--CHHHHHHHHHHhCC--
Q 019991 172 QDLEKILEICAS---KKIPMVVANPDYVTVEARALRVMPGTLASKFEK-LGGEVR--WMGKP--DKLWATLFTMILRV-- 241 (332)
Q Consensus 172 ~~l~~~l~~l~~---~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~-~g~e~~--~~GKP--~p~if~~Al~~lg~-- 241 (332)
+.+..-++.++. +...++.+|+....... ..++.++.++. +|-... ..-|| ..+.+++....--+
T Consensus 64 p~~l~~ie~~~~vygek~i~v~SNsaG~~~~D-----~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~ 138 (190)
T KOG2961|consen 64 PPLLPSIERCKAVYGEKDIAVFSNSAGLTEYD-----HDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCT 138 (190)
T ss_pred chhHHHHHHHHHHhCcccEEEEecCcCccccC-----CchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCC
Confidence 334444444433 23345778865542221 24678889988 455443 34466 44555555442223
Q ss_pred ---eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 242 ---QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 242 ---~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
.+||||++.|||..|+..|--++|++..
T Consensus 139 ~se~~~vGDRlfTDI~~aN~mGs~gVw~~~g 169 (190)
T KOG2961|consen 139 SSELIMVGDRLFTDIVYANRMGSLGVWTEPG 169 (190)
T ss_pred hhHeEEEccchhhhHhhhhhccceeEEeccc
Confidence 4899999999999999999999999753
No 171
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.22 E-value=0.008 Score=53.16 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH-h-c-CcccccC--CCCHHHHHHHHHHhC---C
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-L-G-GEVRWMG--KPDKLWATLFTMILR---V 241 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~-~-g-~e~~~~G--KP~p~if~~Al~~lg---~ 241 (332)
|+++.++++.+.++ .++ |+||+....... .+...++..+|.. + . .+....| +|.|.....++++++ .
T Consensus 70 ~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~---~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 70 LPGAVEFLDWLRER-FQVVILSDTFYEFAGP---LMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCcHHHHHH---HHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 57788999988777 775 788877654432 1233334444443 1 1 1111111 222222334444433 2
Q ss_pred -eEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 242 -QMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 242 -~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
.+||||+ .+|+.+|+++|+.. +++
T Consensus 146 ~~v~iGDs-~~D~~~~~aa~~~v-~~~ 170 (205)
T PRK13582 146 RVIAAGDS-YNDTTMLGEADAGI-LFR 170 (205)
T ss_pred eEEEEeCC-HHHHHHHHhCCCCE-EEC
Confidence 6999999 58999999999844 443
No 172
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.20 E-value=0.0042 Score=55.34 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=40.5
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
...++||+.++|+.|+++|++++++||++.........+...|+... |+.++++.+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~-fd~v~~s~~ 147 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMAL-FDAVVESCL 147 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhh-CCEEEEeee
Confidence 35689999999999999999999999987533222233445566655 677776643
No 173
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.20 E-value=0.0038 Score=57.41 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=43.3
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
....++||+.++|+.|+++|++++++||+++. .....|+++|+....++.++++++
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~--~~~~~l~~~gl~~~f~d~ii~~~~ 151 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTRE--MMDVVAPEAALQGYRPDYNVTTDD 151 (253)
T ss_pred hcCccCCCHHHHHHHHHHCCCeEEEECCCcHH--HHHHHHHHHHhcCCCCceEEcccc
Confidence 35678999999999999999999999997643 344567788887652266777654
No 174
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.18 E-value=0.011 Score=54.20 Aligned_cols=62 Identities=34% Similarity=0.462 Sum_probs=52.2
Q ss_pred CccEEEEeccceeecC---------------------------CccCcCHHHHHHHHHHCCCeEEEEeCCCCCh--hHHH
Q 019991 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTI 79 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g---------------------------~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~--~~~~ 79 (332)
+..+|+.|+|-|+.+. ..++|||.||+++..+.|..+.++||..... ..-.
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~ 157 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI 157 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence 3459999999999874 2678999999999999999999999977533 4567
Q ss_pred HHHHhCCCCcc
Q 019991 80 DKLKSLGFDPS 90 (332)
Q Consensus 80 ~~L~~lGl~~~ 90 (332)
+.|.+.|++..
T Consensus 158 ~nLk~~g~~~~ 168 (274)
T COG2503 158 ENLKSEGLPQV 168 (274)
T ss_pred HHHHHcCcccc
Confidence 88999999865
No 175
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.15 E-value=0.011 Score=50.92 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=29.4
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
+.||+.++|+.|.+. ++++++||+++... ...++.++..
T Consensus 59 ~rPgv~efL~~l~~~-yel~I~T~~~~~yA--~~vl~~ldp~ 97 (156)
T TIGR02250 59 LRPFLHEFLKEASKL-YEMHVYTMGTRAYA--QAIAKLIDPD 97 (156)
T ss_pred ECCCHHHHHHHHHhh-cEEEEEeCCcHHHH--HHHHHHhCcC
Confidence 479999999999955 99999999876432 2345666655
No 176
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.08 E-value=0.015 Score=52.61 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=46.5
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
....++.|+||||.....-...|.+.+..|++.|++++++|+.++ .++...-+.+|++..
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~--aE~~~l~~~l~v~~~ 65 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSSKTR--AEMLYLQKSLGVQGL 65 (274)
T ss_pred cceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEeccchH--HHHHHHHHhcCCCCC
Confidence 356899999999999666677888999999999999999997654 333333356777743
No 177
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.06 E-value=0.013 Score=51.41 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=36.9
Q ss_pred ecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 42 ~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+....++||+.++|+.|+++|++++++||+... .+...++.+|+...
T Consensus 76 ~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~~g~~~~ 122 (201)
T TIGR01491 76 FKEISLRDYAEELVRWLKEKGLKTAIVSGGIMC--LAKKVAEKLNPDYV 122 (201)
T ss_pred HHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHhCCCeE
Confidence 345579999999999999999999999997643 23455677887643
No 178
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.05 E-value=0.025 Score=50.57 Aligned_cols=53 Identities=28% Similarity=0.462 Sum_probs=42.0
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
...++||+.++++.|++.|++++++||+... .....++++|+... |+.++++.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~ 143 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTP--FVAPLLEALGIADY-FSVVIGGD 143 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCccC-ccEEEcCC
Confidence 4578999999999999999999999998643 24467788898776 56666543
No 179
>PRK09449 dUMP phosphatase; Provisional
Probab=96.02 E-value=0.0051 Score=55.28 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=42.9
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
..++||+.++|+.|+ .|++++++||++.. .....|+++|+... |+.++++.++
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~ 146 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTE--LQQVRLERTGLRDY-FDLLVISEQV 146 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHH--HHHHHHHhCChHHH-cCEEEEECcc
Confidence 468999999999999 68999999997643 34467889999887 6888887543
No 180
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.97 E-value=0.015 Score=50.39 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=44.7
Q ss_pred cEEEEeccceeecCCc-------------------------cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhC
Q 019991 31 KAWLLDQFGVLHDGKK-------------------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~~-------------------------~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~l 85 (332)
..+++|+|+||..+.. .-||+.|+|+.|.+. +.+++.|++++.. ....++.+
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y--A~~il~~l 78 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY--ADPVLDIL 78 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH--HHHHHHHH
Confidence 4788999999986541 458999999999987 9999999987543 22345666
Q ss_pred CCCccccccccc
Q 019991 86 GFDPSLFAGAIT 97 (332)
Q Consensus 86 Gl~~~~f~~Iit 97 (332)
+.....++.++.
T Consensus 79 dp~~~~f~~~l~ 90 (162)
T TIGR02251 79 DRGGKVISRRLY 90 (162)
T ss_pred CcCCCEEeEEEE
Confidence 654411344443
No 181
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=95.93 E-value=0.0097 Score=52.50 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH---------h-cC--cccccCCCCHHHHHHHH
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK---------L-GG--EVRWMGKPDKLWATLFT 236 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~---------~-g~--e~~~~GKP~p~if~~Al 236 (332)
.++++.+.++.++++|.++ |+||+...+...- ....++...+.. . |. .+...|++....++..+
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~---~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILVKPL---ARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH---HHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 4588899999888889885 7777655433211 111112222211 1 11 12345677788888888
Q ss_pred HHhCC----eEEEeCChhhHHHHHHHcCCcEEE
Q 019991 237 MILRV----QMQLESSPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 237 ~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~ 265 (332)
++.++ .+++||+. +|+..++.+|...+.
T Consensus 165 ~~~~~~~~~~~~~gDs~-~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSI-SDLPLLSLVGHPYVV 196 (202)
T ss_pred HHcCCCHHHcEeeeCCc-ccHHHHHhCCCcEEe
Confidence 88886 58999995 899999999976644
No 182
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.90 E-value=0.013 Score=52.97 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=41.8
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccc
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iit 97 (332)
.++||+.++|+.|+++|++.+++||+++.. ....|+++|+... |+.+++
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~--~~~~l~~~gl~~~-F~~i~g 137 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERE--LDILLKALGLADY-FDVIVG 137 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHhCCccc-cceEEc
Confidence 579999999999999999999999987543 4466788999998 777777
No 183
>PRK08238 hypothetical protein; Validated
Probab=95.88 E-value=0.012 Score=59.71 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.3
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCC
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl 87 (332)
+.||+.+.+++++++|++++++||+++.. ....++++|+
T Consensus 73 ~~pga~e~L~~lk~~G~~v~LaTas~~~~--a~~i~~~lGl 111 (479)
T PRK08238 73 YNEEVLDYLRAERAAGRKLVLATASDERL--AQAVAAHLGL 111 (479)
T ss_pred CChhHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHcCC
Confidence 56899999999999999999999986532 3345577786
No 184
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=95.76 E-value=0.007 Score=51.66 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=36.5
Q ss_pred cEEEEeccceeecCCc--------------------cCcCHHHHHHHHHHCCCeEEEEeCCCCC-hhHHHHHHH
Q 019991 31 KAWLLDQFGVLHDGKK--------------------PYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLK 83 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~~--------------------~ipGa~e~L~~L~~~G~~v~~vTN~s~~-~~~~~~~L~ 83 (332)
+++++|+||||+.... .-||+.+||+++.+ .+.+++.|.++.. .+.+.+.|.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHHT
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhhh
Confidence 4789999999998663 57999999999954 5999999998743 334444443
No 185
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.75 E-value=0.028 Score=51.86 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=51.4
Q ss_pred EEEEeccceeecCCcc---------------------------------CcC--HHHHHHHHHHCCCeEEEEeCCCCC-h
Q 019991 32 AWLLDQFGVLHDGKKP---------------------------------YPG--AISTLEMLATTGAKMVVISNSSRR-A 75 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~---------------------------------ipG--a~e~L~~L~~~G~~v~~vTN~s~~-~ 75 (332)
+|+||+||||.++... .|+ +.++|++++++|++++++||++.. .
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~ 144 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT 144 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence 9999999999987651 222 889999999999999999998542 3
Q ss_pred hHHHH-HHHhCCCCccccccccccHH
Q 019991 76 STTID-KLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 76 ~~~~~-~L~~lGl~~~~f~~Iits~~ 100 (332)
+...+ .++++|++.. |+.+++++.
T Consensus 145 ~~~a~~ll~~lGi~~~-f~~i~~~d~ 169 (237)
T TIGR01672 145 DTVSKTLAKNFHIPAM-NPVIFAGDK 169 (237)
T ss_pred HHHHHHHHHHhCCchh-eeEEECCCC
Confidence 33444 4567999876 566666543
No 186
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.74 E-value=0.022 Score=47.57 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=47.7
Q ss_pred cEEEEeccceeecCC-------------------------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhC
Q 019991 31 KAWLLDQFGVLHDGK-------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~-------------------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~l 85 (332)
.++.||+|||+|+.. .++|.+.+++++++.+|+-+..+|=| ......+.|+.+
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN--~~~kA~~aLral 78 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN--FEDKAIKALRAL 78 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC--chHHHHHHHHHh
Confidence 378999999999842 56888999999999999866655533 334456789999
Q ss_pred CCCcccccccc
Q 019991 86 GFDPSLFAGAI 96 (332)
Q Consensus 86 Gl~~~~f~~Ii 96 (332)
|+... |+-++
T Consensus 79 ~~~~y-Fhy~V 88 (164)
T COG4996 79 DLLQY-FHYIV 88 (164)
T ss_pred chhhh-EEEEE
Confidence 99887 55433
No 187
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.69 E-value=0.012 Score=55.17 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=60.9
Q ss_pred CccEEEEeccceeecCCc----cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH
Q 019991 29 RFKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~----~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~ 104 (332)
....++||+|-||..... .-|.+.+.+..|++.|--+++.|-+++ +-+...|++++++.. |+.+++.|..+.+
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~--eHV~~sl~~~~L~~~-Fd~ii~~G~~~~~ 197 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNR--EHVRHSLKELKLEGY-FDIIICGGNKAGE 197 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCH--HHHHHHHHHhCCccc-cEEEEeCCccCCc
Confidence 567999999999998764 458889999999999999999987654 346678999999987 8888888766654
Q ss_pred H
Q 019991 105 Y 105 (332)
Q Consensus 105 ~ 105 (332)
+
T Consensus 198 ~ 198 (297)
T PF05152_consen 198 Y 198 (297)
T ss_pred C
Confidence 4
No 188
>PRK08238 hypothetical protein; Validated
Probab=95.60 E-value=0.022 Score=57.81 Aligned_cols=91 Identities=10% Similarity=-0.089 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC--eEEEeC
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV--QMQLES 247 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~--~lmIGD 247 (332)
+++.+.++.++++|.++ ++||++......- ....++ |+.+ +.+.....||++.. +.+.+.++. ..++||
T Consensus 75 pga~e~L~~lk~~G~~v~LaTas~~~~a~~i---~~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~~~~~~yvGD 147 (479)
T PRK08238 75 EEVLDYLRAERAAGRKLVLATASDERLAQAV---AAHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFGERGFDYAGN 147 (479)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCCHHHHHHH---HHHcCC---CCEEEeCCCccccCCchHH-HHHHHHhCccCeeEecC
Confidence 78899999989999985 8898877654421 122222 5554 55555555555432 233355554 489999
Q ss_pred ChhhHHHHHHHcCCcEEEEecchh
Q 019991 248 SPYSLLEGSMQLNLDLTVMEKLQI 271 (332)
Q Consensus 248 s~~~DI~gA~~aG~~ti~~~~~~~ 271 (332)
+ .+|+..++.+| +.+.+|...+
T Consensus 148 S-~~Dlp~~~~A~-~av~Vn~~~~ 169 (479)
T PRK08238 148 S-AADLPVWAAAR-RAIVVGASPG 169 (479)
T ss_pred C-HHHHHHHHhCC-CeEEECCCHH
Confidence 9 58999999999 8888875543
No 189
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=95.55 E-value=0.032 Score=52.25 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=41.2
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
..++||+.++|+.|+++|++++++||++.. .+...++++|+... |+.++++.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~--~~~~~l~~~~i~~~-f~~i~~~d 151 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPER--FVAPLLDQMKIGRY-FRWIIGGD 151 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHH--HHHHHHHHcCcHhh-CeEEEecC
Confidence 467999999999999999999999997653 24456778888766 56666654
No 190
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.54 E-value=0.013 Score=54.41 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
...++||+.++|+.|+++|++++++||+++.. ....++.+|+....++.++++++
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~--~~~~l~~~~l~~~~~d~i~~~~~ 153 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREM--MDVVVPLAAAQGYRPDHVVTTDD 153 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH--HHHHHHHHhhcCCCceEEEcCCc
Confidence 45789999999999999999999999987532 34556666665441256666654
No 191
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.38 E-value=0.015 Score=51.42 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=42.7
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
.+.+++.++|+.|++.|++++++||+++. .....|+.+|+... |+.++++.++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~~-f~~~~~~~~~ 158 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRK--DAAKFLTTHGLEIL-FPVQIWMEDC 158 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHH--HHHHHHHHcCchhh-CCEEEeecCC
Confidence 46677899999999999999999998643 35567899999877 6777776653
No 192
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=95.33 E-value=0.028 Score=49.49 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred ccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccc-ccccc-ccHH-HHHHHHhhcCChh
Q 019991 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL-FAGAI-TSGE-LTHQYLLRRDDAW 113 (332)
Q Consensus 37 lDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~-f~~Ii-ts~~-v~~~~L~~~~~~~ 113 (332)
.-|.+....++.||+.++|+.|++.|+++.++|+.... ......+.+|+.... |.... +|.. .....+++...+
T Consensus 118 ~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~--~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~- 194 (215)
T PF00702_consen 118 FLGLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNES--TASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVK- 194 (215)
T ss_dssp EEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHH--HHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCT-
T ss_pred EEEEEeecCcchhhhhhhhhhhhccCcceeeeeccccc--cccccccccccccccccccccccccchhHHHHHHHHhcC-
Confidence 34556667789999999999999999999999976432 234556789995421 22221 2222 224444443311
Q ss_pred hhhcCCeEEEeecCcc
Q 019991 114 FAALGRSCIHMTWSDR 129 (332)
Q Consensus 114 ~~~~G~~v~~~g~~~~ 129 (332)
+..+..+|.+.-
T Consensus 195 ----~~~v~~vGDg~n 206 (215)
T PF00702_consen 195 ----PGEVAMVGDGVN 206 (215)
T ss_dssp ----GGGEEEEESSGG
T ss_pred ----CCEEEEEccCHH
Confidence 236777776543
No 193
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.26 E-value=0.035 Score=49.84 Aligned_cols=95 Identities=7% Similarity=-0.005 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHHHHHH---h-c-Cc---ccccCCCCHHHHHHHHHHhCC-
Q 019991 171 LQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEK---L-G-GE---VRWMGKPDKLWATLFTMILRV- 241 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~---~-g-~e---~~~~GKP~p~if~~Al~~lg~- 241 (332)
|+++.++++.+++++...|+|++-..+... .....++...|.. + . .. .....||.+.....++++.+.
T Consensus 70 ~pga~ell~~lk~~~~~~IVS~~~~~~~~~---il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 70 LEGAVEFVDWLRERFQVVILSDTFYEFSQP---LMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred CccHHHHHHHHHhCCeEEEEeCChHHHHHH---HHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 577888888877765335778766554432 1222233344431 1 1 10 112456777777777777774
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
+++|||+ .+|+..++++|+..++-.|-
T Consensus 147 ~v~vGDs-~nDl~ml~~Ag~~ia~~ak~ 173 (203)
T TIGR02137 147 VIAAGDS-YNDTTMLSEAHAGILFHAPE 173 (203)
T ss_pred EEEEeCC-HHHHHHHHhCCCCEEecCCH
Confidence 8999999 58999999999999887554
No 194
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.20 E-value=0.049 Score=45.76 Aligned_cols=52 Identities=29% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
....+||+.++|+.|+++|++++++||+++.. ....++.+ +... |+.+++++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~--~~~~~~~~-l~~~-f~~i~~~~ 113 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRA--QKLLLRKH-LGDY-FDLILGSD 113 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHH--HHHHHHHH-HHhc-CcEEEecC
Confidence 45678999999999999999999999987643 22344443 4444 45566554
No 195
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.03 E-value=0.021 Score=50.94 Aligned_cols=53 Identities=26% Similarity=0.496 Sum_probs=43.8
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
...++||+.++|++|++. ++++++||++.. .+...|+++|+... |+.++++++
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~--~~~~~l~~~~l~~~-fd~i~~~~~ 147 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRE--TQYKRLRKSGLFPF-FDDIFVSED 147 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchH--HHHHHHHHCCcHhh-cCEEEEcCc
Confidence 357899999999999999 999999998643 34567889999887 688887754
No 196
>PLN02811 hydrolase
Probab=95.02 E-value=0.053 Score=48.79 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHH-HhCCCCccccccccccH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL-KSLGFDPSLFAGAITSG 99 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L-~~lGl~~~~f~~Iits~ 99 (332)
...++||+.++|+.|++.|++++++||+++.. +...+ +..|+... |+.++++.
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~-f~~i~~~~ 129 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSL-MHHVVTGD 129 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhh-CCEEEECC
Confidence 55789999999999999999999999987532 22223 23355555 56777776
No 197
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.94 E-value=0.051 Score=47.23 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=43.0
Q ss_pred ecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 42 ~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
.+...++|| .++|+.|++. ++++++||+++.. +...|+++|+... |+.+++++++
T Consensus 84 ~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~--~~~~l~~~~l~~~-fd~i~~~~~~ 138 (188)
T PRK10725 84 LDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAI--AEALLAHLGLRRY-FDAVVAADDV 138 (188)
T ss_pred hccCCCccH-HHHHHHHHhC-CCEEEEcCCchHH--HHHHHHhCCcHhH-ceEEEehhhc
Confidence 345677885 6999999875 8999999976543 4577899999887 7888888764
No 198
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=94.93 E-value=0.037 Score=47.83 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=42.1
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
..+++||+.++++.|++.|++++++||+.+.. +...++++|+... |+.++++.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~--~~~~l~~~~l~~~-f~~i~~~~ 122 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFF--IDPVLEGIGEKDV-FIEIYSNP 122 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHH--HHHHHHHcCChhh-eeEEeccC
Confidence 36899999999999999999999999986532 4456788888776 56776654
No 199
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=94.93 E-value=0.083 Score=54.59 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=65.7
Q ss_pred CccEEEEeccceeec----CCccCcCHHHHHHHHHHCC-CeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHH
Q 019991 29 RFKAWLLDQFGVLHD----GKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~----g~~~ipGa~e~L~~L~~~G-~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~ 103 (332)
.+..+.+..||++.- ..+++||+.++|++|+++| ++++++||.++. .....++++|+... |..+ .+.+- .
T Consensus 363 g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~--~a~~i~~~lgi~~~-f~~~-~p~~K-~ 437 (556)
T TIGR01525 363 GKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRS--AAEAVAAELGIDEV-HAEL-LPEDK-L 437 (556)
T ss_pred CcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHH--HHHHHHHHhCCCee-eccC-CHHHH-H
Confidence 356677777875543 5789999999999999999 999999997643 24456788999766 5544 33322 2
Q ss_pred HHHhhcCChhhhhcCCeEEEeecCcccchhhhcCC
Q 019991 104 QYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG 138 (332)
Q Consensus 104 ~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g 138 (332)
+.+++... .|.++..+|.+..+...++..|
T Consensus 438 ~~v~~l~~-----~~~~v~~vGDg~nD~~al~~A~ 467 (556)
T TIGR01525 438 AIVKELQE-----EGGVVAMVGDGINDAPALAAAD 467 (556)
T ss_pred HHHHHHHH-----cCCEEEEEECChhHHHHHhhCC
Confidence 23333211 1457777787654444455444
No 200
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.89 E-value=0.085 Score=47.12 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=34.5
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
.++||+.++|+.|+++|++++++||+... .....++++|+...
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~~~i~~~ 127 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDL--FAEHVKDKLGLDAA 127 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHH--HHHHHHHHcCCCce
Confidence 57899999999999999999999997642 23455677888654
No 201
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=94.84 E-value=0.073 Score=54.77 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred EEEEeccc----eeecCCccCcCHHHHHHHHHHCCC-eEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHH
Q 019991 32 AWLLDQFG----VLHDGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (332)
Q Consensus 32 ~vlfDlDG----vL~~g~~~ipGa~e~L~~L~~~G~-~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L 106 (332)
.+.+-.|| ++....+++||+.+.|++|+++|+ +++++||.+.. .....++++|+... |..+. +.+- ...+
T Consensus 344 ~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~--~a~~i~~~lgi~~~-f~~~~-p~~K-~~~i 418 (536)
T TIGR01512 344 IVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRA--VAERVARELGIDEV-HAELL-PEDK-LEIV 418 (536)
T ss_pred EEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHH--HHHHHHHHcCChhh-hhccC-cHHH-HHHH
Confidence 34444554 445567899999999999999999 99999997543 24456788999765 44433 3222 2233
Q ss_pred hhcCChhhhhcCCeEEEeecCcccchhhhcCC
Q 019991 107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLG 138 (332)
Q Consensus 107 ~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g 138 (332)
++.... |.++..+|.+..+...++..|
T Consensus 419 ~~l~~~-----~~~v~~vGDg~nD~~al~~A~ 445 (536)
T TIGR01512 419 KELREK-----YGPVAMVGDGINDAPALAAAD 445 (536)
T ss_pred HHHHhc-----CCEEEEEeCCHHHHHHHHhCC
Confidence 332211 457777786554444455544
No 202
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.76 E-value=0.03 Score=50.06 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=45.1
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~ 102 (332)
.+++|++.++|+.+++. ++++++||+.+.. ...+|+++|+... |+.+++|++.-
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~--~~~~l~~~gl~~~-Fd~v~~s~~~g 151 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPH--QERKLRQLGLLDY-FDAVFISEDVG 151 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHH--HHHHHHHcCChhh-hheEEEecccc
Confidence 67899999999999988 9999999975432 4578899998888 79999987655
No 203
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=94.71 E-value=0.16 Score=52.58 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=64.3
Q ss_pred CccEEEEeccceee----cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH
Q 019991 29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (332)
Q Consensus 29 ~~~~vlfDlDGvL~----~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~ 104 (332)
....+.++.||++. -..+++||+.++|++|++.|++++++||..+. .....++++|++ . |..+. +.+ ..+
T Consensus 384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~--~a~~ia~~lgi~-~-~~~~~-p~~-K~~ 457 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRK--TAKAVAKELGIN-V-RAEVL-PDD-KAA 457 (562)
T ss_pred CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHH--HHHHHHHHcCCc-E-EccCC-hHH-HHH
Confidence 35668888887763 36689999999999999999999999997643 234556778986 2 33332 221 122
Q ss_pred HHhhcCChhhhhcCCeEEEeecCcccchhhhcCCc
Q 019991 105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (332)
Q Consensus 105 ~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~ 139 (332)
.+++.... |+++..+|.+..+...++..|+
T Consensus 458 ~v~~l~~~-----~~~v~~VGDg~nD~~al~~A~v 487 (562)
T TIGR01511 458 LIKELQEK-----GRVVAMVGDGINDAPALAQADV 487 (562)
T ss_pred HHHHHHHc-----CCEEEEEeCCCccHHHHhhCCE
Confidence 22222111 5678888876554445555543
No 204
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.67 E-value=0.025 Score=50.09 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=37.3
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHh-CCCCccccccccccHH
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGE 100 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~-lGl~~~~f~~Iits~~ 100 (332)
.++||+.++|+.|+++|++++++||+++... ...+.. .|+... |+.++++.+
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~--~~~~~~~~~l~~~-fd~v~~s~~ 136 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHT--TFWPEEYPEVRAA-ADHIYLSQD 136 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhH--HHHHhhchhHHHh-cCEEEEecc
Confidence 5799999999999999999999999875321 122222 355555 577777754
No 205
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=94.63 E-value=0.043 Score=47.73 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=41.7
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~ 102 (332)
...++||+.++|+.|+ ++++++||+++. .....++++|+... |+.++++++..
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~--~~~~~l~~~gl~~~-fd~i~~~~~~~ 134 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRA--HARRALNRLGIEDC-FDGIFCFDTAN 134 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHH--HHHHHHHHcCcHhh-hCeEEEeeccc
Confidence 4468999999999997 589999998753 35577889999877 78888876543
No 206
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=94.40 E-value=0.28 Score=41.13 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=62.2
Q ss_pred cEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcC
Q 019991 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~ 110 (332)
+...-++++|+..+..+++.+.+.|+.|++. ..+++.|.....+ +.+-++-.|++.+. ...-.-....+..+.+..
T Consensus 15 d~~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gs--l~~lae~~gi~~~r-v~a~a~~e~K~~ii~eLk 90 (152)
T COG4087 15 DSKAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGS--LVQLAEFVGIPVER-VFAGADPEMKAKIIRELK 90 (152)
T ss_pred eeecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchH--HHHHHHHcCCceee-eecccCHHHHHHHHHHhc
Confidence 3556678999999999999999999999999 9999998765432 34445567887652 222222233333444443
Q ss_pred ChhhhhcCCeEEEeecCcccchhhhcC
Q 019991 111 DAWFAALGRSCIHMTWSDRGAISLEGL 137 (332)
Q Consensus 111 ~~~~~~~G~~v~~~g~~~~~~~~l~~~ 137 (332)
++ +..+..+|.+.-+...|++.
T Consensus 91 k~-----~~k~vmVGnGaND~laLr~A 112 (152)
T COG4087 91 KR-----YEKVVMVGNGANDILALREA 112 (152)
T ss_pred CC-----CcEEEEecCCcchHHHhhhc
Confidence 22 45666667654332244443
No 207
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=94.24 E-value=0.046 Score=46.87 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH-h---------c---CcccccCCCCHHHHHHHHH
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-L---------G---GEVRWMGKPDKLWATLFTM 237 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~-~---------g---~e~~~~GKP~p~if~~Al~ 237 (332)
+++.+.++.+.++|.++ |+|+....+...- +...++...+.. + | .++...|...+..+....+
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~---~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~ 152 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPV---AEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLE 152 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHH---HHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHH
Confidence 56788888888888885 6677655433221 111122222221 1 1 0012233444567888788
Q ss_pred HhCC----eEEEeCChhhHHHHHHHc
Q 019991 238 ILRV----QMQLESSPYSLLEGSMQL 259 (332)
Q Consensus 238 ~lg~----~lmIGDs~~~DI~gA~~a 259 (332)
+.++ .++|||+ .+|+..++.+
T Consensus 153 ~~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 153 ESKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred HhCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 7776 5899999 5899988754
No 208
>PLN03017 trehalose-phosphatase
Probab=94.16 E-value=0.068 Score=52.29 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=41.9
Q ss_pred ccccccHHHHhhhc--CccEEEEeccceee---c-CC--ccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 15 FQTLNGLRHIAETR--RFKAWLLDQFGVLH---D-GK--KPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~vlfDlDGvL~---~-g~--~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
|.-++.+.++++.. +..++++|+||||. + .. .+-++..++|++|. .+.+++++|..+.
T Consensus 94 psal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~ 159 (366)
T PLN03017 94 PSALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI 159 (366)
T ss_pred ChHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCH
Confidence 44445566665411 23578899999999 3 22 57788899999999 7899999997553
No 209
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=94.13 E-value=0.041 Score=51.85 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhH----HHHHH-h--cCcccccCCCCH---------HHHHH
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLA----SKFEK-L--GGEVRWMGKPDK---------LWATL 234 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~----~~~e~-~--g~e~~~~GKP~p---------~if~~ 234 (332)
+++.+.++.|.++|+|+ |+|+.-...... .+...++. ..+.. + ..+....|||.| .+++.
T Consensus 124 pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~---vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~ 200 (277)
T TIGR01544 124 DGYENFFDKLQQHSIPVFIFSAGIGNVLEE---VLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALR 200 (277)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHHHHH---HHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHH
Confidence 66788898888999996 667654432211 11111121 11111 1 123466789988 78888
Q ss_pred HHHHhC--C----eEEEeCChhhHHHHHHHc
Q 019991 235 FTMILR--V----QMQLESSPYSLLEGSMQL 259 (332)
Q Consensus 235 Al~~lg--~----~lmIGDs~~~DI~gA~~a 259 (332)
+.+.++ + +++|||++ +|+.+|.-.
T Consensus 201 ~~~~~~~~~~~~~vI~vGDs~-~Dl~ma~g~ 230 (277)
T TIGR01544 201 NTEYFNQLKDRSNIILLGDSQ-GDLRMADGV 230 (277)
T ss_pred HHHHhCccCCcceEEEECcCh-hhhhHhcCC
Confidence 888887 2 69999995 899997765
No 210
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=94.11 E-value=0.08 Score=56.50 Aligned_cols=56 Identities=23% Similarity=0.150 Sum_probs=41.7
Q ss_pred CccEEEEeccceeecCC------ccCcCHHHHHHHHHH-CCCeEEEEeCCCCChhHHHHHHHhCC
Q 019991 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG 86 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~------~~ipGa~e~L~~L~~-~G~~v~~vTN~s~~~~~~~~~L~~lG 86 (332)
+.+.++||+||||.+.. .+-+...++|+.|.+ .|..++++|..+ ...+.+.+...+
T Consensus 491 ~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~--~~~l~~~~~~~~ 553 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRD--RDTLERWFGDLP 553 (726)
T ss_pred cceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence 56899999999999732 356788899999999 599999999754 333444444333
No 211
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=93.90 E-value=0.11 Score=46.47 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcccccc-ccccH
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG-AITSG 99 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~-Iits~ 99 (332)
...++||+.++|+.| +++++++||+++. .+...|+.+|+... |+. ++++.
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~--~~~~~l~~~~l~~~-F~~~v~~~~ 136 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVS--KMQHSLGKTGMLHY-FPDKLFSGY 136 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHH--HHHHHHHhcChHHh-CcceEeeHH
Confidence 467899999999998 4999999997643 35567888999877 654 55554
No 212
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=93.69 E-value=0.46 Score=42.07 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=68.2
Q ss_pred cccCHHHHHHHHHHHHhCCCcEEE-ecCCccceeccceec---CCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC-
Q 019991 167 RPMSLQDLEKILEICASKKIPMVV-ANPDYVTVEARALRV---MPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV- 241 (332)
Q Consensus 167 ~~~~y~~l~~~l~~l~~~g~~lIa-TN~D~~~~~~~~~~l---~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~- 241 (332)
..-.|++..++++.-++.|+++.. ++...-. .++.+ ..|.+..+|...- +...=+|-...-|..+++..|.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~A---QkL~Fghs~agdL~~lfsGyf-DttiG~KrE~~SY~kIa~~iGl~ 176 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA---QKLFFGHSDAGDLNSLFSGYF-DTTIGKKRESQSYAKIAGDIGLP 176 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchh---HHHhhcccccccHHhhhccee-eccccccccchhHHHHHHhcCCC
Confidence 334588999999888899999644 4433221 11222 4566777665420 1122246677789999999998
Q ss_pred ---eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 242 ---QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 242 ---~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
.+++.|+++ ...+|+.+||+|+++.|-
T Consensus 177 p~eilFLSDn~~-EL~AA~~vGl~t~l~~R~ 206 (229)
T COG4229 177 PAEILFLSDNPE-ELKAAAGVGLATGLAVRP 206 (229)
T ss_pred chheEEecCCHH-HHHHHHhcchheeeeecC
Confidence 589999975 799999999999998764
No 213
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.66 E-value=0.11 Score=57.65 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=41.3
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC-ccccccccccHHH
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD-PSLFAGAITSGEL 101 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~-~~~f~~Iits~~v 101 (332)
++||+.++|++|+++|++++++||+.+. .+...|+++|+. .. |+.++++.++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~--~~~~~L~~~gl~~~~-Fd~iv~~~~~ 214 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRI--KVDANLAAAGLPLSM-FDAIVSADAF 214 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHcCCChhH-CCEEEECccc
Confidence 4889999999999999999999997643 345678899996 44 5777776654
No 214
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=93.65 E-value=0.17 Score=45.33 Aligned_cols=58 Identities=22% Similarity=0.074 Sum_probs=45.3
Q ss_pred CccEEEEeccceeecCC--------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 29 RFKAWLLDQFGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~--------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
..++.++|+||||++.. -.-|++.+||+.+-+ .+.++|.|.++... +...+..+|+..
T Consensus 20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y--a~~~l~~l~~~~ 85 (195)
T TIGR02245 20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW--IEIKMTELGVLT 85 (195)
T ss_pred CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH--HHHHHHHhcccC
Confidence 56899999999999862 457999999999988 89999999876432 334567777643
No 215
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=93.51 E-value=0.11 Score=53.52 Aligned_cols=88 Identities=6% Similarity=-0.071 Sum_probs=56.3
Q ss_pred ccCHHHHHHHHHHHHhCCC-cE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCeEEE
Q 019991 168 PMSLQDLEKILEICASKKI-PM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQMQL 245 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~-~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~lmI 245 (332)
...++++.++++.|+++|. ++ ++||.+......- ...-++..+|... ..++.+.+.+...++....+||
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i---~~~lgi~~~f~~~------~p~~K~~~i~~l~~~~~~v~~v 431 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERV---ARELGIDEVHAEL------LPEDKLEIVKELREKYGPVAMV 431 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHH---HHHcCChhhhhcc------CcHHHHHHHHHHHhcCCEEEEE
Confidence 4468999999999999999 85 7787655433221 1222233333321 1234455555554444457999
Q ss_pred eCChhhHHHHHHHcCCcEEEE
Q 019991 246 ESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 246 GDs~~~DI~gA~~aG~~ti~~ 266 (332)
||+. +|+.+++++|+ ++.+
T Consensus 432 GDg~-nD~~al~~A~v-gia~ 450 (536)
T TIGR01512 432 GDGI-NDAPALAAADV-GIAM 450 (536)
T ss_pred eCCH-HHHHHHHhCCE-EEEe
Confidence 9995 79999999997 4444
No 216
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=93.45 E-value=0.15 Score=46.51 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=42.4
Q ss_pred ccHHHHhhhcCccEEEEeccceeec--------CCccCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 19 NGLRHIAETRRFKAWLLDQFGVLHD--------GKKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 19 ~~~~~~~~~~~~~~vlfDlDGvL~~--------g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
+.+.++++..+..+.+=.+.|-+|. ...++||+.++|++|+++|++++++||++..
T Consensus 60 ~~~~~~~~~d~k~~~lk~lqg~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~ 123 (220)
T TIGR01691 60 RKLHAEMDKDRKATPLKTLQGLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVP 123 (220)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 3455555533455667777777664 2368999999999999999999999998754
No 217
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=93.37 E-value=0.061 Score=55.58 Aligned_cols=89 Identities=4% Similarity=-0.046 Sum_probs=54.2
Q ss_pred ccCHHHHHHHHHHHHhCC-CcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCeEEE
Q 019991 168 PMSLQDLEKILEICASKK-IPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQMQL 245 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g-~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~lmI 245 (332)
...|+++.++++.|+++| +++ ++||........- ...-++..+|.. ..+++.+.+++...+.-...+||
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i---~~~lgi~~~f~~------~~p~~K~~~v~~l~~~~~~v~~v 453 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAV---AAELGIDEVHAE------LLPEDKLAIVKELQEEGGVVAMV 453 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHH---HHHhCCCeeecc------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 446899999999999999 885 7787655432211 111122222221 11233345555544332347999
Q ss_pred eCChhhHHHHHHHcCCcEEEE
Q 019991 246 ESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 246 GDs~~~DI~gA~~aG~~ti~~ 266 (332)
||+. +|+.++++||+-..|-
T Consensus 454 GDg~-nD~~al~~A~vgia~g 473 (556)
T TIGR01525 454 GDGI-NDAPALAAADVGIAMG 473 (556)
T ss_pred ECCh-hHHHHHhhCCEeEEeC
Confidence 9995 8999999999655544
No 218
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=93.30 E-value=0.14 Score=49.96 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=41.5
Q ss_pred CccEEEEeccceeecCCccCcCH---HHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhC
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGA---ISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSL 85 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa---~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~l 85 (332)
.-+.+-||-|+|||+...-+..- ..-|-.|-++|+.+++||.++- ..+.+.++|..+
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~GL 206 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHGL 206 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 35799999999999977555333 3445566689999999999874 445566666544
No 219
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=93.29 E-value=0.31 Score=43.68 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=34.2
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
..+++||+.++|+.+++.+ +++++||+.+.. ....++++|+...
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~--~~~il~~lgi~~~ 109 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTFYEF--SQPLMRQLGFPTL 109 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCChHHH--HHHHHHHcCCchh
Confidence 4578999999999999975 999999986532 2345678888743
No 220
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=93.28 E-value=0.23 Score=46.92 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.1
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhC
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~l 85 (332)
.++||+.++|+.|++.|++++++||++... +...++.+
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~--~~~~l~~~ 181 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA--VSKIVNTL 181 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHH--HHHHHHHh
Confidence 689999999999999999999999976432 33344444
No 221
>PLN02954 phosphoserine phosphatase
Probab=93.04 E-value=0.14 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=33.9
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.++||+.++|+.|+++|++++++||+.+.. +...++.+|++
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~--i~~~l~~~gi~ 124 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQM--IAPVAAILGIP 124 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHH--HHHHHHHhCCC
Confidence 367999999999999999999999987532 44567788886
No 222
>PLN02151 trehalose-phosphatase
Probab=93.03 E-value=0.17 Score=49.33 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=40.2
Q ss_pred ccccHHHHhhhc--CccEEEEeccceee------cCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 17 TLNGLRHIAETR--RFKAWLLDQFGVLH------DGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 17 ~~~~~~~~~~~~--~~~~vlfDlDGvL~------~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
-++.+.++++.. +-.++++|.||||. +...+-|+..++|+.|. .+.+++++|..+
T Consensus 83 a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~ 145 (354)
T PLN02151 83 ALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRC 145 (354)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCC
Confidence 344566666522 23589999999999 33367888899999999 457999999754
No 223
>PLN02382 probable sucrose-phosphatase
Probab=92.91 E-value=0.16 Score=50.66 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=39.4
Q ss_pred EEEEeccceeecCC--ccC--cCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 32 AWLLDQFGVLHDGK--KPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 32 ~vlfDlDGvL~~g~--~~i--pGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
.++.|+||||+++. .-. +...+.++++.++|+.++++|. |+...+...++.+++..+
T Consensus 11 lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTG--R~~~~~~~l~~~~~l~~p 71 (413)
T PLN02382 11 MIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTG--RSPTLYKELRKEKPLLTP 71 (413)
T ss_pred EEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcC--CCHHHHHHHHHhCCCCCC
Confidence 67789999999863 222 2344455888999999999996 444455555667776654
No 224
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=92.81 E-value=0.19 Score=47.41 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=36.7
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
...+.||+.+++++|+++|+|++++|++.+. -+...|+.+|+...
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~--~Ie~vL~~lgl~~~ 163 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGN--VLEEVLRQAGVYHP 163 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHHcCCCCc
Confidence 5688999999999999999999999987653 24556777887543
No 225
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=92.60 E-value=0.089 Score=48.07 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=37.7
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
..++||+.++|+.|++. ++++++||++.. ++..|+... |+.++++++.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-------~~~~gl~~~-fd~i~~~~~~ 159 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-------PELFGLGDY-FEFVLRAGPH 159 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-------HHHCCcHHh-hceeEecccC
Confidence 35679999999999875 999999997642 467888877 6888777644
No 226
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=92.12 E-value=0.31 Score=52.97 Aligned_cols=53 Identities=28% Similarity=0.325 Sum_probs=40.6
Q ss_pred CccEEEEeccceeecCC----ccCcCHHHHHHHH-HHCCCeEEEEeCCCCChhHHHHHHH
Q 019991 29 RFKAWLLDQFGVLHDGK----KPYPGAISTLEML-ATTGAKMVVISNSSRRASTTIDKLK 83 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~----~~ipGa~e~L~~L-~~~G~~v~~vTN~s~~~~~~~~~L~ 83 (332)
+.+++++|+||||.... .+-|+..++|+.| ++.|..++++|..+. +.+.+.|.
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~--~~L~~~f~ 652 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSR--KTLADWFS 652 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH--HHHHHHhC
Confidence 46899999999999654 5667889999998 677999999997543 33444443
No 227
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=91.04 E-value=0.15 Score=47.85 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHH-HHHh-cCcccccCCCCHHHHHHHHHHhCCeEEE
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASK-FEKL-GGEVRWMGKPDKLWATLFTMILRVQMQL 245 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~-~e~~-g~e~~~~GKP~p~if~~Al~~lg~~lmI 245 (332)
..++++.++++.+.++|.++ ++||.+......-...+..-++... .+.+ .++ -++|.+.-++.+.+.+++.++|
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~---~~~~K~~rr~~I~~~y~Ivl~v 194 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK---DKSSKESRRQKVQKDYEIVLLF 194 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC---CCCCcHHHHHHHHhcCCEEEEE
Confidence 35689999999998999885 8899764322100000111111111 1111 121 1367778888888888889999
Q ss_pred eCChhhHHHHHHH
Q 019991 246 ESSPYSLLEGSMQ 258 (332)
Q Consensus 246 GDs~~~DI~gA~~ 258 (332)
||++ .|+.++..
T Consensus 195 GD~~-~Df~~~~~ 206 (266)
T TIGR01533 195 GDNL-LDFDDFFY 206 (266)
T ss_pred CCCH-HHhhhhhc
Confidence 9995 79976443
No 228
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=91.00 E-value=0.36 Score=44.26 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.6
Q ss_pred CccEEEEeccceeecCC------ccCcCHHHHHHHHHHC-CCeEEEEeCC
Q 019991 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATT-GAKMVVISNS 71 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~------~~ipGa~e~L~~L~~~-G~~v~~vTN~ 71 (332)
+..+++||.||||.... .+-|+..+.|+.|.+. +..++++|..
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 45789999999998632 3568888999999876 4567899975
No 229
>PLN02580 trehalose-phosphatase
Probab=90.88 E-value=0.43 Score=47.07 Aligned_cols=57 Identities=23% Similarity=0.156 Sum_probs=40.6
Q ss_pred ccccccHHHHhhhc--CccEEEEeccceeec------CCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 15 FQTLNGLRHIAETR--RFKAWLLDQFGVLHD------GKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~vlfDlDGvL~~------g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
|.-++++.++..-. +-.++++|.||||.. ...+-|+..++|+.|.+. .+++|+|..+
T Consensus 102 p~al~~~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~ 166 (384)
T PLN02580 102 PSALTSFEQIANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRS 166 (384)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCC
Confidence 33444566665422 235888999999974 335678889999999887 4899999743
No 230
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=90.32 E-value=0.43 Score=40.78 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=35.6
Q ss_pred ecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 42 ~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.....+.||+.++++.++++|++++++|++.+. .+...++++|+..
T Consensus 69 ~~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~--~i~~~~~~~g~~~ 114 (177)
T TIGR01488 69 ARQVALRPGARELISWLKERGIDTVIVSGGFDF--FVEPVAEKLGIDD 114 (177)
T ss_pred HhcCCcCcCHHHHHHHHHHCCCEEEEECCCcHH--HHHHHHHHcCCch
Confidence 344567899999999999999999999997643 2344567777764
No 231
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=90.27 E-value=1 Score=49.37 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=44.0
Q ss_pred cceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcccccccccc
Q 019991 38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (332)
Q Consensus 38 DGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits 98 (332)
=|.+.-.+++.||+.++++.|+++|+++.++|+....+ .....+++|+... ...++++
T Consensus 520 lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~t--A~~ia~~~Gi~~~-~~~~v~g 577 (884)
T TIGR01522 520 LGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQET--AVSIARRLGMPSK-TSQSVSG 577 (884)
T ss_pred EEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCCC-CCceeEh
Confidence 37777788999999999999999999999999976433 2334578899754 2444443
No 232
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=1.2 Score=42.85 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=47.1
Q ss_pred EEEEeccceeecC-------------------CccCcCHHHHHHHHHHCC-CeEEEEeCCCCC-hhHHHHHHHhCCCCc
Q 019991 32 AWLLDQFGVLHDG-------------------KKPYPGAISTLEMLATTG-AKMVVISNSSRR-ASTTIDKLKSLGFDP 89 (332)
Q Consensus 32 ~vlfDlDGvL~~g-------------------~~~ipGa~e~L~~L~~~G-~~v~~vTN~s~~-~~~~~~~L~~lGl~~ 89 (332)
++|-|+|.|+... ..++||+..+.+.|.+.| -++.++||++.. -+.+.+.+..-+++.
T Consensus 163 giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~ 241 (373)
T COG4850 163 GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPY 241 (373)
T ss_pred eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCC
Confidence 7999999998763 268999999999999998 999999999853 355666666666664
No 233
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=90.20 E-value=0.91 Score=40.63 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=19.2
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
++-||+.|+...|+++|..++++|.+=
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF 114 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGF 114 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCCh
Confidence 456777777777777777777777653
No 234
>PRK10671 copA copper exporting ATPase; Provisional
Probab=89.98 E-value=0.92 Score=49.29 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=64.8
Q ss_pred ccEEEEeccce----eecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHH
Q 019991 30 FKAWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (332)
Q Consensus 30 ~~~vlfDlDGv----L~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~ 105 (332)
...+.+-.||. +.-.+++.||+.+.|+.|++.|++++++|+..... ....++++|+... |..+. +.+ ..+.
T Consensus 630 ~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~--a~~ia~~lgi~~~-~~~~~-p~~-K~~~ 704 (834)
T PRK10671 630 ATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT--ANAIAKEAGIDEV-IAGVL-PDG-KAEA 704 (834)
T ss_pred CeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcCCCEE-EeCCC-HHH-HHHH
Confidence 44566656655 55678999999999999999999999999965432 3345678999765 44433 322 2233
Q ss_pred HhhcCChhhhhcCCeEEEeecCcccchhhhcCCc
Q 019991 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL 139 (332)
Q Consensus 106 L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g~ 139 (332)
+++.... |.+++.+|.+..+...++..|+
T Consensus 705 i~~l~~~-----~~~v~~vGDg~nD~~al~~Agv 733 (834)
T PRK10671 705 IKRLQSQ-----GRQVAMVGDGINDAPALAQADV 733 (834)
T ss_pred HHHHhhc-----CCEEEEEeCCHHHHHHHHhCCe
Confidence 4333221 5678788876544445555544
No 235
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=89.75 E-value=0.29 Score=45.24 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=37.5
Q ss_pred cEEEEeccceeecCCccCcCHHHHHHHHH---HCCCeEEEEeCCCCChhHHHHHHHhCCCCcccccccccc
Q 019991 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLA---TTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~~~ipGa~e~L~~L~---~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits 98 (332)
..++.|+||||+++.. ++..++-+.++ +.+..++++| +|+.+.+.+.+++.+++.+ +.++++
T Consensus 3 ~ll~sDlD~Tl~~~~~--~~~~~l~~~l~~~~~~~~~~v~~T--GRs~~~~~~~~~~~~l~~P--d~~I~s 67 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDD--EALARLEELLEQQARPEILFVYVT--GRSLESVLRLLREYNLPQP--DYIITS 67 (247)
T ss_dssp EEEEEETBTTTBHCHH--HHHHHHHHHHHHHHCCGEEEEEE---SS-HHHHHHHHHHCT-EE---SEEEET
T ss_pred EEEEEECCCCCcCCCH--HHHHHHHHHHHHhhCCCceEEEEC--CCCHHHHHHHHHhCCCCCC--CEEEec
Confidence 5789999999994332 23344444444 4455566666 5666778888888888754 445554
No 236
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=89.73 E-value=0.045 Score=55.01 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCc-EEEecCCccceeccce-ecCC-----ChhHHHHHHh---cCccc-------------ccCCCC
Q 019991 172 QDLEKILEICASKKIP-MVVANPDYVTVEARAL-RVMP-----GTLASKFEKL---GGEVR-------------WMGKPD 228 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~-lIaTN~D~~~~~~~~~-~l~~-----G~i~~~~e~~---g~e~~-------------~~GKP~ 228 (332)
+++...|+.+++.|.+ +++||++..+...... .++. ..+..+|+.+ .++|. ..|++.
T Consensus 186 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l~ 265 (448)
T PF05761_consen 186 PKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKLK 265 (448)
T ss_dssp CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSEE
T ss_pred chHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCccc
Confidence 4677778888888976 6899998876543221 1111 1466666552 12211 122221
Q ss_pred HHH---------------HHHHHHHhCC----eEEEeCChhhHHHHHHHc-CCcEEEE
Q 019991 229 KLW---------------ATLFTMILRV----QMQLESSPYSLLEGSMQL-NLDLTVM 266 (332)
Q Consensus 229 p~i---------------f~~Al~~lg~----~lmIGDs~~~DI~gA~~a-G~~ti~~ 266 (332)
..- .....+.+|. .++|||.+.+||..++.. ||+|++|
T Consensus 266 ~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~I 323 (448)
T PF05761_consen 266 WGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAI 323 (448)
T ss_dssp CS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE
T ss_pred cccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEE
Confidence 111 1222233333 589999999999998885 9999988
No 237
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.11 E-value=0.15 Score=43.72 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=37.1
Q ss_pred ecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH
Q 019991 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (332)
Q Consensus 42 ~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~ 100 (332)
+....++||+.++|+ +++++||+++.. ....++++|+... |+.++++++
T Consensus 86 ~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~--~~~~l~~~~l~~~-fd~v~~~~~ 134 (175)
T TIGR01493 86 YKNLPPWPDSAAALA-------RVAILSNASHWA--FDQFAQQAGLPWY-FDRAFSVDT 134 (175)
T ss_pred HhcCCCCCchHHHHH-------HHhhhhCCCHHH--HHHHHHHCCCHHH-HhhhccHhh
Confidence 345679999999998 378999986532 4457889999887 677777664
No 238
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=88.74 E-value=0.31 Score=44.56 Aligned_cols=88 Identities=9% Similarity=-0.073 Sum_probs=51.4
Q ss_pred cccCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHH-HHHHh-cCcccccCCCCHHHHHHHHHHhCC--
Q 019991 167 RPMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLAS-KFEKL-GGEVRWMGKPDKLWATLFTMILRV-- 241 (332)
Q Consensus 167 ~~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~-~~e~~-g~e~~~~GKP~p~if~~Al~~lg~-- 241 (332)
..-.|++..++++.|+++|.++ ++||+.+....-.. .+...++.. .++.+ ++.... ...+..++++++.
T Consensus 22 ~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~-~L~~~gl~~~~~~~Ii~s~~~~-----~~~l~~~~~~~~~~~ 95 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHK-TLKSLGINADLPEMIISSGEIA-----VQMILESKKRFDIRN 95 (242)
T ss_pred CCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHH-HHHHCCCCccccceEEccHHHH-----HHHHHhhhhhccCCC
Confidence 3445899999999999999986 88997654221000 122223433 44442 322111 1355566666654
Q ss_pred --eEEEeCChhhHHHHHHHcCC
Q 019991 242 --QMQLESSPYSLLEGSMQLNL 261 (332)
Q Consensus 242 --~lmIGDs~~~DI~gA~~aG~ 261 (332)
.++|||+. .|++....+|.
T Consensus 96 ~~~~~vGd~~-~d~~~~~~~~~ 116 (242)
T TIGR01459 96 GIIYLLGHLE-NDIINLMQCYT 116 (242)
T ss_pred ceEEEeCCcc-cchhhhcCCCc
Confidence 58999984 57765544454
No 239
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=88.67 E-value=3.8 Score=40.01 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=35.6
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.|+..++++++++.|+.+.+.||+..-+++..+.|.+.|+..
T Consensus 76 ~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~ 117 (378)
T PRK05301 76 RKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDH 117 (378)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCE
Confidence 588999999999999999999998865666778888888753
No 240
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=88.34 E-value=1.8 Score=41.75 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=32.3
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
++.||+.++++.|++.|++++++||+.+... ...++++|+..
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~--~~l~~~Lgld~ 222 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFA--DYLRDKLRLDA 222 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhH--HHHHHHcCCCe
Confidence 5789999999999999999999999875321 23345677753
No 241
>PRK11590 hypothetical protein; Provisional
Probab=88.27 E-value=0.75 Score=41.15 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=31.6
Q ss_pred CccCcCHHHHH-HHHHHCCCeEEEEeCCCCChhHHHHHHHhCCC
Q 019991 45 KKPYPGAISTL-EMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (332)
Q Consensus 45 ~~~ipGa~e~L-~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl 87 (332)
..++||+.+.| +.+++.|++++++||+++.. ....++.+|+
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~--~~~il~~l~~ 135 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPL--VEQVYFDTPW 135 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHH--HHHHHHHccc
Confidence 35699999999 67889999999999986532 2345567775
No 242
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=88.17 E-value=1.7 Score=46.29 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=71.6
Q ss_pred EEEEeccc----eeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH--H
Q 019991 32 AWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ--Y 105 (332)
Q Consensus 32 ~vlfDlDG----vL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~--~ 105 (332)
.+++-.|| ++.-.+++.|++.+++++|++.|+++..+|...+.. ..+.-+++|++.. +.+ +.|++-... -
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~--A~~iA~~lGId~v-~Ae-llPedK~~~V~~ 594 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRT--AEAIAKELGIDEV-RAE-LLPEDKAEIVRE 594 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcChHhh-ecc-CCcHHHHHHHHH
Confidence 57888887 555688999999999999999999999999854322 2233467999765 334 444443322 2
Q ss_pred HhhcCChhhhhcCCeEEEeecCcccchhhhcC--CccccC----CCCCccEEEEe
Q 019991 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGL--GLKVVE----NVEEADFILAH 154 (332)
Q Consensus 106 L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~--g~~~~~----~~~~~~~vv~~ 154 (332)
|++. |++|..+|.+.-+...|... |+..-. ..+-+|++++.
T Consensus 595 l~~~--------g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~ 641 (713)
T COG2217 595 LQAE--------GRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMR 641 (713)
T ss_pred HHhc--------CCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEec
Confidence 4433 67888888765444445443 332111 13567888884
No 243
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=88.10 E-value=0.63 Score=40.82 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=34.5
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
..++||+.++++.++++|.+++++||+.... +...++.+|+...
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~--v~~~~~~lg~~~~ 129 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTIL--VKPLARILGIDNA 129 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHH--HHHHHHHcCCcce
Confidence 3689999999999999999999999976532 3344567888643
No 244
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=87.54 E-value=1.5 Score=45.58 Aligned_cols=84 Identities=7% Similarity=-0.030 Sum_probs=51.5
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCeEEEe
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQMQLE 246 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~lmIG 246 (332)
...+++..++++.|+++|+++ ++||........- ...-++. ++. ....++.+.+++...++-...+|||
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~i---a~~lgi~-~~~------~~~p~~K~~~v~~l~~~~~~v~~VG 473 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAV---AKELGIN-VRA------EVLPDDKAALIKELQEKGRVVAMVG 473 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHH---HHHcCCc-EEc------cCChHHHHHHHHHHHHcCCEEEEEe
Confidence 345799999999999999985 6777554322211 1111111 110 1122344556665544333479999
Q ss_pred CChhhHHHHHHHcCCc
Q 019991 247 SSPYSLLEGSMQLNLD 262 (332)
Q Consensus 247 Ds~~~DI~gA~~aG~~ 262 (332)
|+. +|+.+++++|+-
T Consensus 474 Dg~-nD~~al~~A~vg 488 (562)
T TIGR01511 474 DGI-NDAPALAQADVG 488 (562)
T ss_pred CCC-ccHHHHhhCCEE
Confidence 995 899999999984
No 245
>PRK11590 hypothetical protein; Provisional
Probab=87.13 E-value=0.58 Score=41.88 Aligned_cols=27 Identities=4% Similarity=-0.380 Sum_probs=18.9
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
..+-|||. +|+..-..+|- .+++|-..
T Consensus 179 ~~aY~Ds~-~D~pmL~~a~~-~~~vnp~~ 205 (211)
T PRK11590 179 YSGYSDSK-QDNPLLYFCQH-RWRVTPRG 205 (211)
T ss_pred EEEecCCc-ccHHHHHhCCC-CEEECccH
Confidence 35889995 89998888874 44554443
No 246
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=87.09 E-value=7.2 Score=34.73 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=34.9
Q ss_pred EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCeEEEeCChhhHHHHHHHcCC
Q 019991 189 VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQMQLESSPYSLLEGSMQLNL 261 (332)
Q Consensus 189 IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~lmIGDs~~~DI~gA~~aG~ 261 (332)
|.+|.+...+.+...... .....+|--.+..+....+.....+|+||+ .+|+.+|+...+
T Consensus 121 i~sn~~~ih~dg~h~i~~------------~~ds~fG~dK~~vI~~l~e~~e~~fy~GDs-vsDlsaaklsDl 180 (220)
T COG4359 121 IVSNNDYIHIDGQHSIKY------------TDDSQFGHDKSSVIHELSEPNESIFYCGDS-VSDLSAAKLSDL 180 (220)
T ss_pred EeecCceEcCCCceeeec------------CCccccCCCcchhHHHhhcCCceEEEecCC-cccccHhhhhhh
Confidence 778877765543221111 222344433444455554444457999999 589999998643
No 247
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=86.88 E-value=2.1 Score=45.99 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=60.4
Q ss_pred ccEEEEeccc----eeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHH
Q 019991 30 FKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (332)
Q Consensus 30 ~~~vlfDlDG----vL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~ 105 (332)
...+.+=.|| .+.-.+++.||+.+.|+.|++.|++++++|+.... ......+++|+... + . .++.+ ....
T Consensus 548 ~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~--~a~~ia~~lgi~~~-~-~-~~p~~-K~~~ 621 (741)
T PRK11033 548 KTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPR--AAAAIAGELGIDFR-A-G-LLPED-KVKA 621 (741)
T ss_pred CEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHHcCCCee-c-C-CCHHH-HHHH
Confidence 4555555454 55667899999999999999999999999986532 23455678999743 2 2 33332 2223
Q ss_pred HhhcCChhhhhcCCeEEEeecCcccchhhhcCC
Q 019991 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG 138 (332)
Q Consensus 106 L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~g 138 (332)
+++... +..+..+|.+.-+...++..+
T Consensus 622 v~~l~~------~~~v~mvGDgiNDapAl~~A~ 648 (741)
T PRK11033 622 VTELNQ------HAPLAMVGDGINDAPAMKAAS 648 (741)
T ss_pred HHHHhc------CCCEEEEECCHHhHHHHHhCC
Confidence 333322 235777776544334455443
No 248
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=86.39 E-value=1.3 Score=46.19 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=51.8
Q ss_pred cEEEEeccceeecCC------------ccCcCHHHHHHHHHHCCCeEEEEeCCCC----ChhHHHHHHHhCCCCccccc-
Q 019991 31 KAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLFA- 93 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~------------~~ipGa~e~L~~L~~~G~~v~~vTN~s~----~~~~~~~~L~~lGl~~~~f~- 93 (332)
+.|+-|+||||..+. .-.-|+.++..+++++||++.++|..+. .++.+.+-++.-|-..+. -
T Consensus 531 kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPd-GP 609 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPD-GP 609 (738)
T ss_pred cEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCC-CC
Confidence 689999999999865 3345899999999999999999998652 345666666666665542 2
Q ss_pred cccccHHHHH
Q 019991 94 GAITSGELTH 103 (332)
Q Consensus 94 ~Iits~~v~~ 103 (332)
-+++++-...
T Consensus 610 ViLSPd~lf~ 619 (738)
T KOG2116|consen 610 VILSPDSLFA 619 (738)
T ss_pred EEeCCCcchH
Confidence 3455444443
No 249
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=86.32 E-value=7.6 Score=37.55 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=35.8
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.|+..++++.+++.|+.+.+.||+..-+++..+.|.+.|+..
T Consensus 67 ~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~ 108 (358)
T TIGR02109 67 RPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDH 108 (358)
T ss_pred cccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCE
Confidence 588999999999999999999998865667778888888753
No 250
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=85.95 E-value=1.2 Score=39.93 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=32.2
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCC
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lG 86 (332)
....+.||+.++++.|+++|++++++||+.+. .+...++.++
T Consensus 67 ~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~--~i~~il~~~~ 108 (214)
T TIGR03333 67 ETAEIREGFREFVAFINEHGIPFYVISGGMDF--FVYPLLEGIV 108 (214)
T ss_pred hcCcccccHHHHHHHHHHCCCeEEEECCCcHH--HHHHHHHhhC
Confidence 34689999999999999999999999998642 2233455543
No 251
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=85.75 E-value=1.2 Score=40.69 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.5
Q ss_pred eecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCCh
Q 019991 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA 75 (332)
Q Consensus 41 L~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~ 75 (332)
++....+.||+..+++.|+..|+|++++||+++.+
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~ 121 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSAS 121 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCccc
Confidence 45577889999999999999999999999987543
No 252
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=85.16 E-value=1.8 Score=43.15 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=52.5
Q ss_pred CccEEEEeccceeecCCcc------------CcCHHHHHHHHHHCCCeEEEEeCCCC----ChhHHHHHHHhCCCCcccc
Q 019991 29 RFKAWLLDQFGVLHDGKKP------------YPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLF 92 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~------------ipGa~e~L~~L~~~G~~v~~vTN~s~----~~~~~~~~L~~lGl~~~~f 92 (332)
..+.|++|+||||..+.-+ ..|+..+.-.+.++|+++.++|..+- +++.+....+.-|...+.
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpd- 452 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPD- 452 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCC-
Confidence 4678999999999986633 46788888888899999999999652 345555666667776553
Q ss_pred c-cccccHHHHH
Q 019991 93 A-GAITSGELTH 103 (332)
Q Consensus 93 ~-~Iits~~v~~ 103 (332)
. .|.++..+.+
T Consensus 453 gpviLspd~t~a 464 (580)
T COG5083 453 GPVILSPDRTMA 464 (580)
T ss_pred CCEeeccchhhh
Confidence 3 3444444433
No 253
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=85.02 E-value=0.12 Score=44.60 Aligned_cols=88 Identities=7% Similarity=-0.026 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCC----eEEE
Q 019991 172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRV----QMQL 245 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~----~lmI 245 (332)
+++.+.|+.+.+. ..+ |.|+....+...---.+++. ...|+.. +++.....||. +.+.++.+|. ++||
T Consensus 45 Pgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~--~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIiV 118 (162)
T TIGR02251 45 PHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRG--GKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVIII 118 (162)
T ss_pred CCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcC--CCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEEE
Confidence 7889999987655 664 77887766544210012211 1133332 55554555665 6677787775 6999
Q ss_pred eCChhhHHHHHHHcCCcEEEE
Q 019991 246 ESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 246 GDs~~~DI~gA~~aG~~ti~~ 266 (332)
||++ .|+.++.++|+....+
T Consensus 119 DD~~-~~~~~~~~NgI~i~~f 138 (162)
T TIGR02251 119 DNSP-YSYSLQPDNAIPIKSW 138 (162)
T ss_pred eCCh-hhhccCccCEeecCCC
Confidence 9996 6999999999998766
No 254
>PHA02597 30.2 hypothetical protein; Provisional
Probab=84.55 E-value=1.4 Score=38.61 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=34.4
Q ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc---ccccccccHH
Q 019991 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS---LFAGAITSGE 100 (332)
Q Consensus 43 ~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~---~f~~Iits~~ 100 (332)
....++||+.++|++|++.+ +++++||.+..... ..++.+|+... .|+.+++++.
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~--~~~~~~~l~~~f~~~f~~i~~~~~ 128 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY-DFVAVTALGDSIDA--LLNRQFNLNALFPGAFSEVLMCGH 128 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC-CEEEEeCCccchhH--HHHhhCCHHHhCCCcccEEEEecc
Confidence 44578999999999999874 67888887654322 22344554321 1345555543
No 255
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=84.52 E-value=1.7 Score=38.64 Aligned_cols=47 Identities=9% Similarity=-0.050 Sum_probs=36.6
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
..|.++...++.+++++|+ +++|||+ .+|+.+.+.+|...+.-|...
T Consensus 145 ~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~vam~Na~~ 195 (225)
T TIGR01482 145 PQGVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPGFGVAVANAQP 195 (225)
T ss_pred eCCCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcCceEEcCChhH
Confidence 3355566678889999987 6899999 589999999999766555443
No 256
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=84.29 E-value=1.8 Score=40.40 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=48.9
Q ss_pred EEEEeccceeecCC--ccCc--CH--------------------HHHHH---HHHH------CCCeEEEEeCCCC-ChhH
Q 019991 32 AWLLDQFGVLHDGK--KPYP--GA--------------------ISTLE---MLAT------TGAKMVVISNSSR-RAST 77 (332)
Q Consensus 32 ~vlfDlDGvL~~g~--~~ip--Ga--------------------~e~L~---~L~~------~G~~v~~vTN~s~-~~~~ 77 (332)
-|.||-|+||.+.+ .++. |. ..++. +|++ .-+++++||..+. ..+.
T Consensus 123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R 202 (264)
T PF06189_consen 123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER 202 (264)
T ss_pred EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence 58999999999865 2221 11 12333 3332 2378999998653 3467
Q ss_pred HHHHHHhCCCCccccccccccHHHHHHHHhhc
Q 019991 78 TIDKLKSLGFDPSLFAGAITSGELTHQYLLRR 109 (332)
Q Consensus 78 ~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~ 109 (332)
+++.|++||+..+ +..+-+|......|+..
T Consensus 203 vI~TLr~Wgv~vD--EafFLgG~~K~~vL~~~ 232 (264)
T PF06189_consen 203 VIRTLRSWGVRVD--EAFFLGGLPKGPVLKAF 232 (264)
T ss_pred HHHHHHHcCCcHh--HHHHhCCCchhHHHHhh
Confidence 8899999999987 34555555555555544
No 257
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=83.65 E-value=2.8 Score=39.94 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=35.0
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCC-CeEEEEeCCCC
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG-AKMVVISNSSR 73 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G-~~v~~vTN~s~ 73 (332)
+++.+-|=++| .-+++|...|+++.+++.| ++++++||++.
T Consensus 79 ~pd~vtis~~G----EPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 79 EPDHVTISLSG----EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CCCEEEEeCCC----CcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 46677776666 5678999999999999999 79999999987
No 258
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=83.49 E-value=3.8 Score=43.49 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=60.5
Q ss_pred ccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCChhhhh
Q 019991 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA 116 (332)
Q Consensus 37 lDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~~~~~~ 116 (332)
+-|++.-.+++.||+.+.++.|++.|+++.++|..... ......+++|+... +. -.+|.+- ..++++....
T Consensus 437 ~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~--ta~~iA~~lGI~~v-~a-~~~PedK-~~~v~~lq~~---- 507 (675)
T TIGR01497 437 IYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRL--TAAAIAAEAGVDDF-IA-EATPEDK-IALIRQEQAE---- 507 (675)
T ss_pred EEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHHcCCCEE-Ec-CCCHHHH-HHHHHHHHHc----
Confidence 45777788899999999999999999999999985432 23344567899754 32 3444432 2333332111
Q ss_pred cCCeEEEeecCcccchhhhcCCc
Q 019991 117 LGRSCIHMTWSDRGAISLEGLGL 139 (332)
Q Consensus 117 ~G~~v~~~g~~~~~~~~l~~~g~ 139 (332)
|..+..+|.+.-+...|+..++
T Consensus 508 -g~~VamvGDG~NDapAL~~Adv 529 (675)
T TIGR01497 508 -GKLVAMTGDGTNDAPALAQADV 529 (675)
T ss_pred -CCeEEEECCCcchHHHHHhCCE
Confidence 5567777766544455665543
No 259
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=82.99 E-value=12 Score=34.33 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=54.0
Q ss_pred ccccHHHHhhhcCccEEEEeccceeecCCccCcC------HHHHHHHHHHCCCeEEEEeCCCC---Chh---HHHHHHHh
Q 019991 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPG------AISTLEMLATTGAKMVVISNSSR---RAS---TTIDKLKS 84 (332)
Q Consensus 17 ~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipG------a~e~L~~L~~~G~~v~~vTN~s~---~~~---~~~~~L~~ 84 (332)
..+.+++++. +.|..+..+++++.+.....++ -.+.++.|+..|+.++-+.||.. -.+ +..+.|++
T Consensus 26 ~~~~v~~~l~--~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~ 103 (250)
T PF09587_consen 26 IFEDVKPLLQ--SADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDK 103 (250)
T ss_pred HHHHHHHHHh--hCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHH
Confidence 4567888888 7899999999999887665554 57899999999999998888752 223 34556667
Q ss_pred CCCC
Q 019991 85 LGFD 88 (332)
Q Consensus 85 lGl~ 88 (332)
.|+.
T Consensus 104 ~gi~ 107 (250)
T PF09587_consen 104 AGIP 107 (250)
T ss_pred CCCc
Confidence 7765
No 260
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=82.66 E-value=4.5 Score=43.01 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=59.2
Q ss_pred ccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCChhhhh
Q 019991 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA 116 (332)
Q Consensus 37 lDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~~~~~~ 116 (332)
+-|++.-.+++.||+.+.++.|++.|+++..+|.....+ ....-+++|++.. + .-.+|.+-. +++++....
T Consensus 436 ~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGId~v-~-A~~~PedK~-~iV~~lQ~~---- 506 (679)
T PRK01122 436 VLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT--AAAIAAEAGVDDF-L-AEATPEDKL-ALIRQEQAE---- 506 (679)
T ss_pred EEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCcEE-E-ccCCHHHHH-HHHHHHHHc----
Confidence 557788888999999999999999999999999854322 2233467899754 2 334554433 333322211
Q ss_pred cCCeEEEeecCcccchhhhcC
Q 019991 117 LGRSCIHMTWSDRGAISLEGL 137 (332)
Q Consensus 117 ~G~~v~~~g~~~~~~~~l~~~ 137 (332)
|+.|...|.+--+...|+..
T Consensus 507 -G~~VaMtGDGvNDAPALa~A 526 (679)
T PRK01122 507 -GRLVAMTGDGTNDAPALAQA 526 (679)
T ss_pred -CCeEEEECCCcchHHHHHhC
Confidence 56677777655444456554
No 261
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=82.51 E-value=2.6 Score=37.65 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=36.3
Q ss_pred cCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 224 MGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 224 ~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
.|......++.+++.+|+ +++|||+ .+|+.+++.+|+..+.-|-.+
T Consensus 154 ~~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~vam~Na~~ 203 (230)
T PRK01158 154 PGVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLEMFEVAGFGVAVANADE 203 (230)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhcCceEEecCccH
Confidence 355567788888899987 6999999 579999999999765555544
No 262
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=82.42 E-value=2.9 Score=39.24 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=32.9
Q ss_pred CccEEEEeccceeecCC------ccCcCHHHHHHHHHHCCC-eEEEEeC
Q 019991 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGA-KMVVISN 70 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~------~~ipGa~e~L~~L~~~G~-~v~~vTN 70 (332)
+.+++++|.||||.... .+-++..++|+.|.+... -++++|.
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSG 65 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISG 65 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeC
Confidence 56799999999999854 567778889999988754 4666664
No 263
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.95 E-value=2.8 Score=45.45 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=38.9
Q ss_pred CccEEEEeccceeecCC---------ccCcCHHHHHHHHHHC-CCeEEEEeCCCCChhHHHHHHHh
Q 019991 29 RFKAWLLDQFGVLHDGK---------KPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKS 84 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~---------~~ipGa~e~L~~L~~~-G~~v~~vTN~s~~~~~~~~~L~~ 84 (332)
+..++++|.||||..-. .+-|+..+.|+.|.+. +-.++|+|. |+.+.+.+.|..
T Consensus 506 ~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSG--R~~~~L~~~~~~ 569 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSR--SGKDILDKNFGE 569 (797)
T ss_pred cCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeC--CCHHHHHHHhCC
Confidence 34799999999998542 2667888899999865 567889996 444445555543
No 264
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=81.74 E-value=3.1 Score=36.49 Aligned_cols=40 Identities=13% Similarity=-0.159 Sum_probs=33.9
Q ss_pred ccCCCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcE
Q 019991 223 WMGKPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDL 263 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~t 263 (332)
..|.+.+..++.+++++++ .++|||+ .+|+..++.+|+..
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~-~nD~~~~~~~~~~v 202 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRDEILAFGDS-GNDEEMFEVAGLAV 202 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEEcCC-HHHHHHHHHcCCce
Confidence 4567788889999999886 6999999 58999999999764
No 265
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=81.74 E-value=7.3 Score=42.30 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=71.9
Q ss_pred CccEEEEeccceeec----CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHH-
Q 019991 29 RFKAWLLDQFGVLHD----GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH- 103 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~----g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~- 103 (332)
..-++++=+||.|.- .+.+.|++..+++.|++.|++++.+|+.-+.+ ....-++.|++.- |.++.-++....
T Consensus 702 g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a--A~svA~~VGi~~V-~aev~P~~K~~~I 778 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA--ARSVAQQVGIDNV-YAEVLPEQKAEKI 778 (951)
T ss_pred CceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHH--HHHHHHhhCcceE-EeccCchhhHHHH
Confidence 456788888887764 77999999999999999999999999854332 2233357887665 455544443221
Q ss_pred HHHhhcCChhhhhcCCeEEEeecCcccchhh--hcCCccccC----CCCCccEEEEe
Q 019991 104 QYLLRRDDAWFAALGRSCIHMTWSDRGAISL--EGLGLKVVE----NVEEADFILAH 154 (332)
Q Consensus 104 ~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l--~~~g~~~~~----~~~~~~~vv~~ 154 (332)
+-|++. |..+..+|.+.-+...| .+.|+..-. -.+-+|.|++.
T Consensus 779 k~lq~~--------~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmr 827 (951)
T KOG0207|consen 779 KEIQKN--------GGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMR 827 (951)
T ss_pred HHHHhc--------CCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEc
Confidence 224433 34566677654333333 344553321 13567888883
No 266
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=81.43 E-value=2.3 Score=38.42 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=34.2
Q ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHH-HhCCCCcc
Q 019991 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL-KSLGFDPS 90 (332)
Q Consensus 45 ~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L-~~lGl~~~ 90 (332)
..+.||+.++++++++.|.+++++|.+.. .+.+.+ +.+|+...
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~---~lv~~ia~~lg~d~~ 119 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT---FLVEPIAERLGIDYV 119 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH---HHHHHHHHHhCCchh
Confidence 78899999999999999999999998754 233333 56788754
No 267
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=81.31 E-value=4.9 Score=42.69 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=59.2
Q ss_pred ccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCChhhhh
Q 019991 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA 116 (332)
Q Consensus 37 lDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~~~~~~ 116 (332)
+-|++.-.+++.||+.+.+++|++.|+++..+|.....+ ....-+++|+... |. -++|.+-.. ++++....
T Consensus 432 ~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGI~~v-~A-~~~PedK~~-iV~~lQ~~---- 502 (673)
T PRK14010 432 ILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELT--AATIAKEAGVDRF-VA-ECKPEDKIN-VIREEQAK---- 502 (673)
T ss_pred EEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCceE-Ec-CCCHHHHHH-HHHHHHhC----
Confidence 446777788999999999999999999999999854322 2334467899754 33 345554333 33322111
Q ss_pred cCCeEEEeecCcccchhhhcCC
Q 019991 117 LGRSCIHMTWSDRGAISLEGLG 138 (332)
Q Consensus 117 ~G~~v~~~g~~~~~~~~l~~~g 138 (332)
|+.|...|.+--+...|+..+
T Consensus 503 -G~~VaMtGDGvNDAPALa~AD 523 (673)
T PRK14010 503 -GHIVAMTGDGTNDAPALAEAN 523 (673)
T ss_pred -CCEEEEECCChhhHHHHHhCC
Confidence 566777776554444565543
No 268
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.25 E-value=2.1 Score=39.50 Aligned_cols=67 Identities=27% Similarity=0.284 Sum_probs=48.7
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHH
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~ 102 (332)
+..-.||-.+ -......+|..++++.||+.|..+.++||-.... ...+..+|+... |+.++.|.++-
T Consensus 99 ~~~~~~s~~~--~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~---~~~l~~~~l~~~-fD~vv~S~e~g 165 (237)
T KOG3085|consen 99 FSFRLFSTFA--PSAWKYLDGMQELLQKLRKKGTILGIISNFDDRL---RLLLLPLGLSAY-FDFVVESCEVG 165 (237)
T ss_pred hhhheecccc--ccCceeccHHHHHHHHHHhCCeEEEEecCCcHHH---HHHhhccCHHHh-hhhhhhhhhhc
Confidence 3445566655 3445678899999999999999999999965322 245678888866 78888876543
No 269
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=79.78 E-value=2.2 Score=39.03 Aligned_cols=42 Identities=7% Similarity=-0.149 Sum_probs=33.8
Q ss_pred cCCCCH----HHHHHHHHHhCC----eEEEeCChhhHHHHHHHc-------CCcEEEE
Q 019991 224 MGKPDK----LWATLFTMILRV----QMQLESSPYSLLEGSMQL-------NLDLTVM 266 (332)
Q Consensus 224 ~GKP~p----~if~~Al~~lg~----~lmIGDs~~~DI~gA~~a-------G~~ti~~ 266 (332)
-.||.. ..++.++++++. +++|||+ .+|+.+++.+ |..++.+
T Consensus 160 e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v 216 (244)
T TIGR00685 160 ELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPI 216 (244)
T ss_pred EEeeCCCCHHHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEE
Confidence 345664 778888888875 6999999 5899999988 7788888
No 270
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=79.61 E-value=2.2 Score=38.35 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred ccCcCHHHHHH-HHHHCCCeEEEEeCCCC
Q 019991 46 KPYPGAISTLE-MLATTGAKMVVISNSSR 73 (332)
Q Consensus 46 ~~ipGa~e~L~-~L~~~G~~v~~vTN~s~ 73 (332)
.++||+.+.|+ .++++|.+++++||++.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~ 122 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQ 122 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcH
Confidence 57999999996 88999999999999864
No 271
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=79.44 E-value=6.8 Score=30.60 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=46.9
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
..+.+++|+-||=+-+..-+.-..+..+.++++|.++.++.= .+.+.+.|+..|+...
T Consensus 38 ~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 38 PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNV----SPAVKRLFELSGLFKI 95 (106)
T ss_pred CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhCCceE
Confidence 468999999999999887776677888999999999887763 3456778888888754
No 272
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.12 E-value=4.5 Score=44.52 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=38.9
Q ss_pred CccEEEEeccceeecCC---------------ccCcCHHHHHHHHHHC-CCeEEEEeCCCCChhHHHHHHHhCC
Q 019991 29 RFKAWLLDQFGVLHDGK---------------KPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLG 86 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~---------------~~ipGa~e~L~~L~~~-G~~v~~vTN~s~~~~~~~~~L~~lG 86 (332)
+..++++|.||||..-. .+-|+..++|+.|.+. +-.++|+|+.+ .+.+.+.|...+
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~--~~~Le~~fg~~~ 661 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD--RSVLDENFGEFD 661 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence 34799999999998632 2447778889999865 56788999743 344555554433
No 273
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=78.09 E-value=7.6 Score=32.74 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=39.5
Q ss_pred cEEEEeccceeecCCcc-CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH-hCCCC
Q 019991 31 KAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFD 88 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~~~-ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~-~lGl~ 88 (332)
-.-++|+||.+..-..- --...+.++++.+.|+|+++.|.-+..++ ..++++ .+|-.
T Consensus 44 giAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~-~V~Kia~~f~A~ 102 (138)
T PF04312_consen 44 GIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPE-TVKKIARSFNAV 102 (138)
T ss_pred EEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcH-HHHHHHHHhCCc
Confidence 35689999998874432 23567899999999999999998554443 334443 34433
No 274
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.83 E-value=24 Score=32.64 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCCcEE-EecCCccceeccceecCCChhHHHHHHhcCc-------cc--ccCCCCHHHHHHHHHHhCC
Q 019991 172 QDLEKILEICASKKIPMV-VANPDYVTVEARALRVMPGTLASKFEKLGGE-------VR--WMGKPDKLWATLFTMILRV 241 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~lI-aTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e-------~~--~~GKP~p~if~~Al~~lg~ 241 (332)
.+..++.+.|.++|..++ =+|+|.. +++.++.+|.. |+ ..|=-+|..++.+.++.++
T Consensus 110 ~etl~Aae~Lv~eGF~VlPY~~~D~v-------------~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~v 176 (247)
T PF05690_consen 110 IETLKAAEILVKEGFVVLPYCTDDPV-------------LAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADV 176 (247)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-S-HH-------------HHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSS
T ss_pred hHHHHHHHHHHHCCCEEeecCCCCHH-------------HHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCC
Confidence 344455566788998754 3666664 34445544443 32 3455689999999999998
Q ss_pred eEEEeCC--hhhHHHHHHHcCCcEEEEec
Q 019991 242 QMQLESS--PYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 ~lmIGDs--~~~DI~gA~~aG~~ti~~~~ 268 (332)
+++|.=- ..+|..-|.+.|.+.+++|-
T Consensus 177 PvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 177 PVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp SBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred cEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 7766432 25899999999999999985
No 275
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=77.79 E-value=4.7 Score=35.83 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 227 PDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 227 P~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
-....++.+++++|+ .++|||+. .|+.+.+.+|+..+.-|-.
T Consensus 147 ~K~~~i~~l~~~~~i~~~~~i~iGDs~-ND~~ml~~ag~~vam~na~ 192 (215)
T TIGR01487 147 DKGVGVEKLKELLGIKPEEVAAIGDSE-NDIDLFRVVGFKVAVANAD 192 (215)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHhCCCeEEcCCcc
Confidence 344578888888887 68999995 7999999999877665543
No 276
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.40 E-value=3 Score=42.20 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=34.7
Q ss_pred CccEEEEeccceeecCC-----------------ccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 29 RFKAWLLDQFGVLHDGK-----------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~-----------------~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
..++.++|+|+|||.|. .++....++|..|+++|.-.++.|-|.
T Consensus 221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~ 281 (574)
T COG3882 221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT 281 (574)
T ss_pred ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCc
Confidence 56899999999999865 223334568899999999999988664
No 277
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=76.78 E-value=11 Score=36.13 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=31.7
Q ss_pred CcCHHHHHHHHHHCCC--eEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 48 YPGAISTLEMLATTGA--KMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~--~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.++..++++++++.+. .+.+.||+.... +..+.|.+.|+..
T Consensus 75 r~dl~~li~~i~~~~~l~~i~itTNG~ll~-~~~~~L~~aGl~~ 117 (329)
T PRK13361 75 RRGCDQLVARLGKLPGLEELSLTTNGSRLA-RFAAELADAGLKR 117 (329)
T ss_pred cccHHHHHHHHHhCCCCceEEEEeChhHHH-HHHHHHHHcCCCe
Confidence 5788999999998764 788999976543 4677888888763
No 278
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=2.9 Score=37.81 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=44.2
Q ss_pred ccccHHHHhhhcCccEEEEeccceeecCCcc--CcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 17 ~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~--ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
...++.++++ ..+..-....||...|.+| .++..++++.+++.|+++.+-||.+..
T Consensus 54 ~~~~~~~I~~--~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 54 TPMSADEILA--DIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CccCHHHHHH--HHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 4446777777 6665555555888888887 458999999999999999999998753
No 279
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=75.86 E-value=11 Score=40.54 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=39.1
Q ss_pred cceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 38 DGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
=|.+.-.+++.|++.++++.|++.|+++.++|.....+ ....-+++|+..
T Consensus 434 ~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~~IA~~lGI~~ 483 (755)
T TIGR01647 434 LGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAI--AKETARRLGLGT 483 (755)
T ss_pred EEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCC
Confidence 46777788999999999999999999999999855322 223345788864
No 280
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=75.79 E-value=12 Score=41.27 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=39.2
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
|.+.-.+++.|++.++++.|+++|+++.++|.....+ ....-+++|+...
T Consensus 572 Gli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t--A~~iA~~~GI~~~ 621 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDT--AKAIARNCGILTF 621 (941)
T ss_pred EEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHH--HHHHHHHcCCCCC
Confidence 7777788999999999999999999999999865332 2233457888643
No 281
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=75.56 E-value=3.9 Score=32.55 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=47.7
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
++.+++|+.+|-+-+..-+.-..++.+.++++|.++.++.- .+.+.+.|...|+...
T Consensus 48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~----~~~v~~~l~~~~~~~~ 104 (117)
T PF01740_consen 48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL----NPDVRRILERSGLIDF 104 (117)
T ss_dssp SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH----HHHHHHHHHHTTGHHH
T ss_pred ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCChh
Confidence 58999999999998888888888999999999999988873 3456777888888643
No 282
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=75.51 E-value=23 Score=33.88 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=31.6
Q ss_pred CCc-cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCC
Q 019991 44 GKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (332)
Q Consensus 44 g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl 87 (332)
|++ +.|...++++.+++.|+.+.+.||+....+. ...+...|.
T Consensus 81 GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~-~~~l~~~~~ 124 (318)
T TIGR03470 81 GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKK-LDKFEPSPY 124 (318)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEecCceehHHH-HHHHHhCCC
Confidence 443 4688999999999999999999998764433 344555443
No 283
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=75.15 E-value=1.1 Score=42.70 Aligned_cols=77 Identities=9% Similarity=-0.081 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHh-cCcccccCCCCHHHHHHHHHHhCCeEEEeCC
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKLWATLFTMILRVQMQLESS 248 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~-g~e~~~~GKP~p~if~~Al~~lg~~lmIGDs 248 (332)
=+++.++++.|.++|+++ |+||+++..... .+...++..+|+.+ ++......||+|+..+.-.+ .+++.-+
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~---~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~d~~~~----~~~~~~~ 220 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVE---SMRKVKLDRYFDIIISGGHKAEEYSTMSTEDRQYR----YVFTKTP 220 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHH---HHHHcCCCcccCEEEECCccccCCCCccccccccc----eEEecCC
Confidence 378999999999999986 889887765432 35555677788774 66666777888866542221 2444444
Q ss_pred hhhHHH
Q 019991 249 PYSLLE 254 (332)
Q Consensus 249 ~~~DI~ 254 (332)
...|+.
T Consensus 221 f~~d~~ 226 (301)
T TIGR01684 221 FYLNTT 226 (301)
T ss_pred eEEeCC
Confidence 444543
No 284
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=74.84 E-value=3.1 Score=36.53 Aligned_cols=32 Identities=28% Similarity=0.586 Sum_probs=25.1
Q ss_pred eecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 41 L~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
++.+.+|+|||.|+++.|.+.|....++|..+
T Consensus 68 ~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 68 FFSNLPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp TTTT--B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred hhcCCCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 67888999999999999999998888888754
No 285
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=73.87 E-value=3 Score=36.88 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhCCeEEEeCChhhHHHHHHHcCCcEEEE
Q 019991 227 PDKLWATLFTMILRVQMQLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 227 P~p~if~~Al~~lg~~lmIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
|.+.-=...++..++.++-||| ..||.+|+.+|.+.|-+
T Consensus 172 ~~qy~Kt~~i~~~~~~IhYGDS-D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 172 PGQYTKTQWIQDKNIRIHYGDS-DNDITAAKEAGARGIRI 210 (237)
T ss_pred cccccccHHHHhcCceEEecCC-chhhhHHHhcCccceeE
Confidence 3333334456777888999999 78999999999999876
No 286
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=73.64 E-value=9.6 Score=29.91 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=45.6
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
..+.+++|+-||-+-...-+.-..++.+.++.+|.++.++-- ..++.+.|+..|+..
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~----~~~v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGI----RPEVAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeC----CHHHHHHHHHhCCCh
Confidence 578999999999998877666667788888899998888763 245667888888875
No 287
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=72.89 E-value=13 Score=28.86 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 21 ~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+.+.++....+.+++|+.++=+-+..-+.-..++.+.+++.|.++.++.- ++.+.+.|+..|+...
T Consensus 34 l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~----~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 34 VTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSV----SPRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeC----CHHHHHHHHHhChhhe
Confidence 44444411578999999999998877766667788888999988777764 2346677888888754
No 288
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=72.75 E-value=2.5 Score=38.38 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=24.3
Q ss_pred EEeccceeecCC------ccCcCHHHHHHHHHHCCC-eEEEEeCCC
Q 019991 34 LLDQFGVLHDGK------KPYPGAISTLEMLATTGA-KMVVISNSS 72 (332)
Q Consensus 34 lfDlDGvL~~g~------~~ipGa~e~L~~L~~~G~-~v~~vTN~s 72 (332)
++|.||||..-. .+.+++.++|+.|.+... .++++|..+
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 689999999744 567888899999987654 688888643
No 289
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=71.78 E-value=12 Score=32.60 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=34.7
Q ss_pred ccceeecCCccC--cCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCC
Q 019991 37 QFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (332)
Q Consensus 37 lDGvL~~g~~~i--pGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl 87 (332)
+.++.+.|.+|. |...++++.+++.|+.+.+.||... .+..+.+.+.|+
T Consensus 63 ~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~--~~~l~~l~~~g~ 113 (191)
T TIGR02495 63 IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN--PRVLEELLEEGL 113 (191)
T ss_pred CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC--HHHHHHHHhcCC
Confidence 345555555543 6788999999999999999999874 234455655664
No 290
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=71.69 E-value=6.2 Score=33.84 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 49 pGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|++.++|+.++++|.+++++|.++. ..+...++.+|++.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~--~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPD--EIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEH--HHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCc
Confidence 5555999999999999999998743 22333445777765
No 291
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=71.24 E-value=15 Score=40.44 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=38.2
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.+--.+++.||+.++|+.|+++|+++.++|+.... ......+++|+..
T Consensus 530 Gl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~--tA~~ia~~~gi~~ 578 (917)
T TIGR01116 530 GVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKE--TAEAICRRIGIFS 578 (917)
T ss_pred EEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHH--HHHHHHHHcCCCC
Confidence 566667789999999999999999999999975432 2334556788864
No 292
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.96 E-value=23 Score=30.72 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=49.6
Q ss_pred CccEEEEeccceeec--CCccCcCHHHHHHHHHH-CC-CeEEEEeCCC--CC---hhHHHHHH-HhCCCCcccccccccc
Q 019991 29 RFKAWLLDQFGVLHD--GKKPYPGAISTLEMLAT-TG-AKMVVISNSS--RR---ASTTIDKL-KSLGFDPSLFAGAITS 98 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~--g~~~ipGa~e~L~~L~~-~G-~~v~~vTN~s--~~---~~~~~~~L-~~lGl~~~~f~~Iits 98 (332)
.+++++||=|-+|.- +...+|.-..-++.++. .| +.++++||+. +. ..+.++.| ++.|+++.. ....-+
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlR-Hs~kKP 120 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLR-HSVKKP 120 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEe-ecccCC
Confidence 489999999999876 44678888888888884 34 8899999974 22 23456666 468998764 444333
No 293
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=69.70 E-value=6.4 Score=36.26 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=42.9
Q ss_pred ecCCccCcCHHHHHHHH--HHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccH
Q 019991 42 HDGKKPYPGAISTLEML--ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (332)
Q Consensus 42 ~~g~~~ipGa~e~L~~L--~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~ 99 (332)
..+.++-||..++++.+ ++.|..++++|++-.. -+...|++.|+... |.+|+|..
T Consensus 67 l~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~--fI~~iL~~~gl~~~-f~~I~TNp 123 (234)
T PF06888_consen 67 LRSIPIDPGMKELLRFLAKNQRGFDLIIISDANSF--FIETILEHHGLRDC-FSEIFTNP 123 (234)
T ss_pred HHcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHh--HHHHHHHhCCCccc-cceEEeCC
Confidence 35778999999999999 4589999999996432 24466889999877 67777753
No 294
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=69.64 E-value=29 Score=31.77 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=76.2
Q ss_pred EEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCC
Q 019991 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD 111 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~ 111 (332)
-+++|+|. |..-.....+.++...++|+.-.++|...... -+..+ .+.|-....-..+.+++...
T Consensus 7 HIlp~iDD----Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g----------~y~n~-~~~v~~~~~~ln~~~~~~ai 71 (254)
T COG4464 7 HILPDIDD----GPKSLEESLAMLREAVRQGVTKIVATSHHLHG----------RYENP-IEKVKEKANQLNEILKKEAI 71 (254)
T ss_pred cccCCCCC----CCCcHHHHHHHHHHHHHcCceEEeecccccCC----------ccCCh-HHHHHHHHHHHHHHHHhhcC
Confidence 46677773 77777788889999999999999999743211 01111 12222222223333444433
Q ss_pred hhhhhcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcEEEe
Q 019991 112 AWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVA 191 (332)
Q Consensus 112 ~~~~~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~lIaT 191 (332)
+-....|+.+++-+. .++++.-.......+.+.+++.. +.+-.+....+++-.+..+|+.=|.+
T Consensus 72 dl~v~pGQEIrIt~~------vl~~l~~g~I~tindskYlLIEF----------~~~~v~~ya~~lf~elq~kGi~PIIA 135 (254)
T COG4464 72 DLKVLPGQEIRITGD------VLDDLDKGIILTINDSKYLLIEF----------PMNHVPRYADQLFFELQSKGIIPIIA 135 (254)
T ss_pred CceeccCceEEEchH------HHHHHhcCccccccccceEEEEc----------cCCcchhhHHHHHHHHHHCCceeeee
Confidence 322234666654332 23333211111234667888854 35556677778877778889865666
Q ss_pred cCCccc
Q 019991 192 NPDYVT 197 (332)
Q Consensus 192 N~D~~~ 197 (332)
+|.+.-
T Consensus 136 HPERn~ 141 (254)
T COG4464 136 HPERNR 141 (254)
T ss_pred chhhHH
Confidence 776653
No 295
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=69.12 E-value=15 Score=28.51 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=46.3
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
..+.+++|+-||-+-+..-+.-..++.+.+++.|.++.++.- ...+.+.|+..|+..
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~ 94 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGI----SPAVRITLTESGLDK 94 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECC----CHHHHHHHHHhCchh
Confidence 468999999999999988887778899999999998888763 244667788888754
No 296
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=69.09 E-value=14 Score=40.81 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=37.2
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|.+.-.+++.|++.++++.|+++|+++.++|.....+ ....-+++|+.
T Consensus 543 Gli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~~IA~~lGI~ 590 (902)
T PRK10517 543 GYIAFLDPPKETTAPALKALKASGVTVKILTGDSELV--AAKVCHEVGLD 590 (902)
T ss_pred ehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCC
Confidence 5555577999999999999999999999999854322 22344678885
No 297
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=68.86 E-value=16 Score=27.54 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=48.0
Q ss_pred HHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 21 ~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+.+..+ ...+.+++|+.++=+-+.....-..++.+.++++|..+.+..- ++.+.+.|+..|+...
T Consensus 30 ~~~~~~-~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~----~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 30 LEELLA-EGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNV----SPAVRRVLELTGLDRL 94 (99)
T ss_pred HHHHHH-cCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHhCccee
Confidence 344444 1358999999999988887777778888899999988666653 2356677888888643
No 298
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=68.24 E-value=51 Score=27.88 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHHHHHHhcCcc-cccCCCCHHHHHHHHHHhCC----eEE
Q 019991 170 SLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEV-RWMGKPDKLWATLFTMILRV----QMQ 244 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~-~~~GKP~p~if~~Al~~lg~----~lm 244 (332)
.|+.+.+.++.|.+. +.++.++.|+. |++.+..+.+|-+. ..+.--+|.+=..+++.++. ++|
T Consensus 31 lf~ev~e~iqeL~d~-V~i~IASgDr~-----------gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vm 98 (152)
T COG4087 31 LFSEVSETIQELHDM-VDIYIASGDRK-----------GSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVM 98 (152)
T ss_pred EcHhhHHHHHHHHHh-heEEEecCCcc-----------hHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEE
Confidence 467888888888777 77766666653 34555555555432 34444566776777777764 699
Q ss_pred EeCChhhHHHHHHHcCCcEE
Q 019991 245 LESSPYSLLEGSMQLNLDLT 264 (332)
Q Consensus 245 IGDs~~~DI~gA~~aG~~ti 264 (332)
|||- .+|+.+=++|.+--+
T Consensus 99 VGnG-aND~laLr~ADlGI~ 117 (152)
T COG4087 99 VGNG-ANDILALREADLGIC 117 (152)
T ss_pred ecCC-cchHHHhhhcccceE
Confidence 9999 589998888866633
No 299
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=68.00 E-value=8 Score=33.80 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCc-cceec--cceecC--CChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCC--
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDY-VTVEA--RALRVM--PGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRV-- 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~-~~~~~--~~~~l~--~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~-- 241 (332)
-|+++..+|+.|+++|+++ +||-.+. ..... ..+.+. .+....+.+......++-| .....|+.+.+..|+
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPY 124 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---G
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCCh
Confidence 4899999999999999997 4442221 11111 000111 0111111111122334445 788999999999999
Q ss_pred --eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 242 --QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 242 --~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.+++-|. ...+.-..+.|+.++++..
T Consensus 125 ~eMlFFDDe-~~N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 125 EEMLFFDDE-SRNIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp GGEEEEES--HHHHHHHHTTT-EEEE-SS
T ss_pred hHEEEecCc-hhcceeeEecCcEEEEeCC
Confidence 5788887 4568878889999999965
No 300
>PRK10671 copA copper exporting ATPase; Provisional
Probab=67.15 E-value=29 Score=37.81 Aligned_cols=84 Identities=8% Similarity=-0.071 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhC----Ce
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILR----VQ 242 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg----~~ 242 (332)
.-.+++..++++.|+++|+++ ++|+........ ..+..|-... ++...|+--..++++++ ..
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~------------ia~~lgi~~~-~~~~~p~~K~~~i~~l~~~~~~v 715 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA------------IAKEAGIDEV-IAGVLPDGKAEAIKRLQSQGRQV 715 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHH------------HHHHcCCCEE-EeCCCHHHHHHHHHHHhhcCCEE
Confidence 334688999999998999986 666644432211 1111111110 00111111123334443 26
Q ss_pred EEEeCChhhHHHHHHHcCCcEEE
Q 019991 243 MQLESSPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 243 lmIGDs~~~DI~gA~~aG~~ti~ 265 (332)
+||||+. +|+.+++++|+--.+
T Consensus 716 ~~vGDg~-nD~~al~~Agvgia~ 737 (834)
T PRK10671 716 AMVGDGI-NDAPALAQADVGIAM 737 (834)
T ss_pred EEEeCCH-HHHHHHHhCCeeEEe
Confidence 8999995 799999999994333
No 301
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=67.04 E-value=52 Score=30.81 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCcEE-EecCCccceeccceecCCChhHHHHHHhcC-------ccc--ccCCCCHHHHHHHHHHhCCe
Q 019991 173 DLEKILEICASKKIPMV-VANPDYVTVEARALRVMPGTLASKFEKLGG-------EVR--WMGKPDKLWATLFTMILRVQ 242 (332)
Q Consensus 173 ~l~~~l~~l~~~g~~lI-aTN~D~~~~~~~~~~l~~G~i~~~~e~~g~-------e~~--~~GKP~p~if~~Al~~lg~~ 242 (332)
+..++-+.|.++|..++ =+|+|... ++.++.+|. .|+ ..|=.+|..++.+.++..++
T Consensus 125 etl~Aae~Lv~eGF~VlPY~~~D~v~-------------a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vp 191 (267)
T CHL00162 125 GTLKAAEFLVKKGFTVLPYINADPML-------------AKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIP 191 (267)
T ss_pred HHHHHHHHHHHCCCEEeecCCCCHHH-------------HHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCc
Confidence 44455566788898754 37777653 333333333 232 34566999999999998887
Q ss_pred EEEeCCh--hhHHHHHHHcCCcEEEEec
Q 019991 243 MQLESSP--YSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 243 lmIGDs~--~~DI~gA~~aG~~ti~~~~ 268 (332)
+++|=-+ ..|+.-|.+.|.+.+++|.
T Consensus 192 VivdAGIgt~sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 192 VIIDAGIGTPSEASQAMELGASGVLLNT 219 (267)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEeecc
Confidence 7776433 6799999999999999874
No 302
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=66.13 E-value=28 Score=27.82 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=46.3
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
..+.+++|+.||=+-+..-.--...+++.++..|..+.++..+ +++++.+...|+...
T Consensus 43 ~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~----p~v~~~~~~~gl~~~ 100 (117)
T COG1366 43 GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQ----PEVARTLELTGLDKS 100 (117)
T ss_pred CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCC----HHHHHHHHHhCchhh
Confidence 4556999999999988876666677888999999888888763 456677888999865
No 303
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=65.49 E-value=2.9 Score=37.58 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.9
Q ss_pred CccEEEEeccceeecCCccC
Q 019991 29 RFKAWLLDQFGVLHDGKKPY 48 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~i 48 (332)
..+.++||+||||+++++..
T Consensus 4 ~~~la~FDfDgTLt~~ds~~ 23 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFG 23 (210)
T ss_pred cCcEEEEcCCCCCccCccHH
Confidence 35789999999999997665
No 304
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=64.98 E-value=7.3 Score=38.40 Aligned_cols=81 Identities=26% Similarity=0.324 Sum_probs=54.4
Q ss_pred CccEEEEeccceeecCCc-------------cCcCHHHHHHHHHHCCCeEEEEeCCC---CCh---hHH----HHHHHhC
Q 019991 29 RFKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSS---RRA---STT----IDKLKSL 85 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~-------------~ipGa~e~L~~L~~~G~~v~~vTN~s---~~~---~~~----~~~L~~l 85 (332)
..+-+-||+||||++... ++|.+..=++.|.+.|+.+.+.||.. +.. .+. ......+
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl 153 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL 153 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence 467899999999998653 67888889999999999999999953 211 222 2334557
Q ss_pred CCCccccccccc-----cHHHHHHHHhhc
Q 019991 86 GFDPSLFAGAIT-----SGELTHQYLLRR 109 (332)
Q Consensus 86 Gl~~~~f~~Iit-----s~~v~~~~L~~~ 109 (332)
|++...+..++. +...+.+++++.
T Consensus 154 ~vPi~~~~A~~~~~yRKP~tGMwe~~~~~ 182 (422)
T KOG2134|consen 154 GVPIQLLAAIIKGKYRKPSTGMWEFLKRL 182 (422)
T ss_pred CCceEEeeeccCCcccCcchhHHHHHHHH
Confidence 777653222222 344555666543
No 305
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=64.83 E-value=26 Score=36.09 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=68.6
Q ss_pred ccCCCCCccccccccHHHHhhhc-Ccc-EEEEe--ccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC-CChhHHHH
Q 019991 6 SVQSNDPHLFQTLNGLRHIAETR-RFK-AWLLD--QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTID 80 (332)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~vlfD--lDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s-~~~~~~~~ 80 (332)
.+++.-.+.|..++..-+-+++. .-. .|+-| +-||++-.+.+.||.+|-++.||+.|++.+.+|... .+.+.+
T Consensus 403 ~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~I-- 480 (681)
T COG2216 403 YVRERGGHIPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAI-- 480 (681)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHH--
Confidence 34444444555444444434311 122 33333 569999999999999999999999999999999843 333222
Q ss_pred HHHhCCCCccccccccccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchhhhcC
Q 019991 81 KLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGL 137 (332)
Q Consensus 81 ~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~l~~~ 137 (332)
-++.|++.. -.=.++.+-.. .+++.... |+=|...|.+.-+...|...
T Consensus 481 -A~EAGVDdf--iAeatPEdK~~-~I~~eQ~~-----grlVAMtGDGTNDAPALAqA 528 (681)
T COG2216 481 -AAEAGVDDF--IAEATPEDKLA-LIRQEQAE-----GRLVAMTGDGTNDAPALAQA 528 (681)
T ss_pred -HHHhCchhh--hhcCChHHHHH-HHHHHHhc-----CcEEEEcCCCCCcchhhhhc
Confidence 346777654 23344544333 33333221 44455545443333345444
No 306
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=64.30 E-value=25 Score=38.50 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=38.0
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|.+.-.+++.|++.++++.|+++|+++.++|.....+ ....-+++|+.
T Consensus 508 Gli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t--A~aIA~~lGI~ 555 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIV--TARICQEVGID 555 (867)
T ss_pred EEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCC
Confidence 6677788999999999999999999999999854322 22334678886
No 307
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=63.50 E-value=12 Score=33.95 Aligned_cols=48 Identities=21% Similarity=0.132 Sum_probs=36.3
Q ss_pred eccceeecCCcc--CcC-HHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH
Q 019991 36 DQFGVLHDGKKP--YPG-AISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (332)
Q Consensus 36 DlDGvL~~g~~~--ipG-a~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~ 83 (332)
...||-+.|.+| .++ +.++++.+++.|+.+++.||...+.+.+.+.+.
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~ 88 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAK 88 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 457999999876 444 368999999999999999998765544444333
No 308
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=63.47 E-value=17 Score=35.61 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCCCc-EEEecCCccceeccceecCCC-hhHHHHHHh---cCccc---ccCCC--------CHHHHHHH
Q 019991 172 QDLEKILEICASKKIP-MVVANPDYVTVEARALRVMPG-TLASKFEKL---GGEVR---WMGKP--------DKLWATLF 235 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~-lIaTN~D~~~~~~~~~~l~~G-~i~~~~e~~---g~e~~---~~GKP--------~p~if~~A 235 (332)
+.+...++.|++.|.+ ++.||+...+...+. ++-.| .+...|+.+ ..+|. --.+| ....++.+
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM-~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv 321 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFVDKGM-RFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKV 321 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhhhcCc-eeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhh
Confidence 4667778888889988 588999888776553 33334 577788873 22221 11233 22233332
Q ss_pred HH--HhCC-------------------eEEEeCChhhHHHHHH-HcCCcEEEE
Q 019991 236 TM--ILRV-------------------QMQLESSPYSLLEGSM-QLNLDLTVM 266 (332)
Q Consensus 236 l~--~lg~-------------------~lmIGDs~~~DI~gA~-~aG~~ti~~ 266 (332)
-+ +-.+ .++.||-+.+|..+-. +.||+|..+
T Consensus 322 ~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAI 374 (510)
T KOG2470|consen 322 DKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAI 374 (510)
T ss_pred hhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccc
Confidence 11 1011 4799999999999877 899999766
No 309
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=62.96 E-value=16 Score=32.36 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEE
Q 019991 226 KPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLT 264 (332)
Q Consensus 226 KP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti 264 (332)
|++ ....+++.+|+ +++|||+ .+|+..-+.+|...+
T Consensus 180 Kg~--al~~l~~~lgi~~~~vi~~GD~-~NDi~ml~~ag~~va 219 (221)
T TIGR02463 180 KGK--AANWLKATYNQPDVKTLGLGDG-PNDLPLLEVADYAVV 219 (221)
T ss_pred HHH--HHHHHHHHhCCCCCcEEEECCC-HHHHHHHHhCCceEE
Confidence 554 46888888887 6899999 579999999997544
No 310
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=62.79 E-value=23 Score=38.99 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=37.8
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|.+.-.+++.|++.++++.|+++|+++.++|.....+ ....-+++|+.
T Consensus 543 Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~aIA~~lGI~ 590 (903)
T PRK15122 543 GFLTFLDPPKESAAPAIAALRENGVAVKVLTGDNPIV--TAKICREVGLE 590 (903)
T ss_pred EEEeccCccHHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCC
Confidence 6677788999999999999999999999999854322 22334678885
No 311
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=62.58 E-value=3.7 Score=35.22 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=12.1
Q ss_pred EEEeccceeecCC
Q 019991 33 WLLDQFGVLHDGK 45 (332)
Q Consensus 33 vlfDlDGvL~~g~ 45 (332)
++||+||||+.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999987
No 312
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=62.20 E-value=30 Score=38.88 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=37.5
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|.+.-.+++.|++.++|+.|+++|+++.++|.....+ ....-+++|+.
T Consensus 639 G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~t--A~~iA~~~Gi~ 686 (1053)
T TIGR01523 639 GLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPET--AKAIAQEVGII 686 (1053)
T ss_pred EEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHH--HHHHHHHcCCC
Confidence 6666677999999999999999999999999855322 22334578885
No 313
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=61.83 E-value=51 Score=32.19 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=94.6
Q ss_pred CccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH---hcCccc
Q 019991 147 EADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK---LGGEVR 222 (332)
Q Consensus 147 ~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~---~g~e~~ 222 (332)
.+|+|.++.. .++ .++...+|+.+++.++++.+.+.|+++ +++|.-.. ... .. .+...++. +|.+.+
T Consensus 26 GADaVY~G~~-~~~-~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~-~~~----~~--~~~~~l~~l~e~GvDav 96 (347)
T COG0826 26 GADAVYIGEK-EFG-LRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLH-NDE----LE--TLERYLDRLVELGVDAV 96 (347)
T ss_pred CCCEEEeCCc-ccc-cccccccCCHHHHHHHHHHHHHcCCeEEEEeccccc-cch----hh--HHHHHHHHHHHcCCCEE
Confidence 5788888643 222 112236799999999999999999975 77775332 111 11 24455554 477888
Q ss_pred ccCCCCHHHHHHHHHHh-CCe-----EEEeCChhhHHHHHHHcCCcEEEEecchhhHHHHHHHhhh------hHHHHhhh
Q 019991 223 WMGKPDKLWATLFTMIL-RVQ-----MQLESSPYSLLEGSMQLNLDLTVMEKLQIYLLFKLLYLNM------MHIHRMCC 290 (332)
Q Consensus 223 ~~GKP~p~if~~Al~~l-g~~-----lmIGDs~~~DI~gA~~aG~~ti~~~~~~~~~~~~~~~~~~------~~~~~~~~ 290 (332)
.++-| .++..+.++. +.. -+==.+.. .+....+.|+.-+.+.+-.+--..+-+=-+. .-+|=.||
T Consensus 97 iv~Dp--g~i~l~~e~~p~l~ih~S~q~~v~N~~-~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalc 173 (347)
T COG0826 97 IVADP--GLIMLARERGPDLPIHVSTQANVTNAE-TAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALC 173 (347)
T ss_pred EEcCH--HHHHHHHHhCCCCcEEEeeeEecCCHH-HHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchh
Confidence 88754 5666665554 232 34456754 5999999998888888888777777666555 35688899
Q ss_pred cccccceee
Q 019991 291 HHFRGRLIL 299 (332)
Q Consensus 291 ~~~~~~~~~ 299 (332)
=++.||-.+
T Consensus 174 ia~SgRC~l 182 (347)
T COG0826 174 IAYSGRCLL 182 (347)
T ss_pred hccCchhhh
Confidence 999998643
No 314
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=61.25 E-value=40 Score=28.73 Aligned_cols=91 Identities=7% Similarity=0.027 Sum_probs=51.0
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCcccee-------c-----c----c-eecCCChhHHHHHHhcCcccccCCC--
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTVE-------A-----R----A-LRVMPGTLASKFEKLGGEVRWMGKP-- 227 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~-------~-----~----~-~~l~~G~i~~~~e~~g~e~~~~GKP-- 227 (332)
....++..++++.+.++|.++ ++|........ . . + +....|++...+. ++ ....+|
T Consensus 26 ~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~---~e-~i~~~~~~ 101 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALH---RE-VISKKPEV 101 (157)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhh---cc-cccCCHHH
Confidence 345688999999998999986 66665433211 0 0 0 1122333332111 11 123344
Q ss_pred -CHHHHHHHHHHhC---C--eEEEeCChhhHHHHHHHcCCcE
Q 019991 228 -DKLWATLFTMILR---V--QMQLESSPYSLLEGSMQLNLDL 263 (332)
Q Consensus 228 -~p~if~~Al~~lg---~--~lmIGDs~~~DI~gA~~aG~~t 263 (332)
..+..+...+.+. . ...+||+ .+|++.-.++|+..
T Consensus 102 ~K~~~l~~i~~~~~~~~~~f~~~~gn~-~~D~~~y~~~gi~~ 142 (157)
T smart00775 102 FKIACLRDIKSLFPPQGNPFYAGFGNR-ITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCC-chhHHHHHHcCCCh
Confidence 3444455444432 2 2457777 69999999999976
No 315
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=60.03 E-value=43 Score=31.42 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.8
Q ss_pred cCcCHHHHHHHHHHCCC-eEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 47 PYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~-~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
+.++..++++.+++.|+ .+.+.||+... .+....|.+.|+.
T Consensus 69 l~~~l~~iv~~l~~~g~~~v~i~TNG~ll-~~~~~~l~~~g~~ 110 (302)
T TIGR02668 69 LRKDLIEIIRRIKDYGIKDVSMTTNGILL-EKLAKKLKEAGLD 110 (302)
T ss_pred cccCHHHHHHHHHhCCCceEEEEcCchHH-HHHHHHHHHCCCC
Confidence 36788899999999998 88999997643 3456678777775
No 316
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=59.99 E-value=7.8 Score=34.95 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 226 KPDKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 226 KP~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
+=.....+..++++|+ ++++||+ .+|+-.=..+|...++=.+
T Consensus 143 ~~K~~~l~~~~~~~g~~~~~~~a~gDs-~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 143 EGKAKALRELAAELGIPLEETVAYGDS-ANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred chHHHHHHHHHHHcCCCHHHeEEEcCc-hhhHHHHHhCCCCeEeCcC
Confidence 3455667777888887 6899999 5899999999988776544
No 317
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=58.92 E-value=1.2e+02 Score=27.98 Aligned_cols=28 Identities=4% Similarity=-0.061 Sum_probs=14.5
Q ss_pred ccCHHHHHHHHHHHHhCCCc--EEEecCCc
Q 019991 168 PMSLQDLEKILEICASKKIP--MVVANPDY 195 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~--lIaTN~D~ 195 (332)
..+++.-.++++.+.+++.. .|.++.|.
T Consensus 161 ~~~~~~g~~~~~~ll~~~p~idai~~~nd~ 190 (279)
T PF00532_consen 161 DFDYESGYEAARELLESHPDIDAIFCANDM 190 (279)
T ss_dssp SSSHHHHHHHHHHHHHTSTT-SEEEESSHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCEEEEEeCHH
Confidence 34566666666666555532 44444343
No 318
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=58.66 E-value=28 Score=33.46 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.6
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHH
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L 82 (332)
+.|...++++.+++.|+.+.+.||++.. +..+.|
T Consensus 143 L~p~l~eli~~~k~~Gi~~~L~TNG~~~--e~l~~L 176 (322)
T PRK13762 143 LYPYLPELIEEFHKRGFTTFLVTNGTRP--DVLEKL 176 (322)
T ss_pred chhhHHHHHHHHHHcCCCEEEECCCCCH--HHHHHH
Confidence 4788999999999999999999998652 334455
No 319
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=58.28 E-value=37 Score=28.45 Aligned_cols=56 Identities=11% Similarity=-0.036 Sum_probs=37.3
Q ss_pred EEEEeccceeecC--------C--ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 32 AWLLDQFGVLHDG--------K--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 32 ~vlfDlDGvL~~g--------~--~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.+-+|+|++++.. . ..|+.+.-.|..|++.|+.++.+||+..+ +-..+.|+.+-+.
T Consensus 20 ~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap-~iA~q~L~~fkvk 85 (144)
T KOG4549|consen 20 LVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAP-QIASQGLETFKVK 85 (144)
T ss_pred EEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCH-HHHHHHHHHhccC
Confidence 4455555555542 1 46899999999999999999999997643 2223444544443
No 320
>PRK00208 thiG thiazole synthase; Reviewed
Probab=56.94 E-value=89 Score=29.10 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=57.8
Q ss_pred cccCHHHHHHHH---HHHHhCCCcEE-EecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCe
Q 019991 167 RPMSLQDLEKIL---EICASKKIPMV-VANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQ 242 (332)
Q Consensus 167 ~~~~y~~l~~~l---~~l~~~g~~lI-aTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~ 242 (332)
....++++.+++ +.|.++|...+ .+++|......-. .+++-.+..+=+-+|.. .|--+|+..+.+.+..+++
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~-~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vp 177 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-EAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVP 177 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCe
Confidence 344444444444 44567798866 6666665432110 11211220000112211 2444688888888887888
Q ss_pred EEEeCCh--hhHHHHHHHcCCcEEEEec
Q 019991 243 MQLESSP--YSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 243 lmIGDs~--~~DI~gA~~aG~~ti~~~~ 268 (332)
++++=.+ ..|+.-|.+.|.+.++++.
T Consensus 178 VIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 178 VIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 8887655 5799999999999999864
No 321
>PLN02645 phosphoglycolate phosphatase
Probab=56.72 E-value=46 Score=31.60 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCc--c-cccCCCCHHHHHHHHHHhC----C
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGE--V-RWMGKPDKLWATLFTMILR----V 241 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e--~-~~~GKP~p~if~~Al~~lg----~ 241 (332)
.+++..++++.|+++|.++ ++||.....+. .+.+.++.+|-+ . ..++ +. ......+++.+ .
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~---------~~~~~l~~lGi~~~~~~I~t-s~-~~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRA---------QYGKKFESLGLNVTEEEIFS-SS-FAAAAYLKSINFPKDK 113 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHH---------HHHHHHHHCCCCCChhhEee-hH-HHHHHHHHhhccCCCC
Confidence 5688899999998999986 78885532221 122333333211 1 1111 11 12333333332 2
Q ss_pred eEEEeCChhhHHHHHHHcCCcEEE
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti~ 265 (332)
.++|+++ ..+.+.+.++|++.+.
T Consensus 114 ~V~viG~-~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGE-EGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcC-HHHHHHHHHCCCEEec
Confidence 5777777 4789999999998654
No 322
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.95 E-value=30 Score=32.83 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=42.3
Q ss_pred ccccHHHHhhhc-----CccEEEEecc-----ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 17 TLNGLRHIAETR-----RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~vlfDlD-----GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
+.+.+.++++.. ..+.+.+|.+ |...-..+-+|+..++++.|+++|.++.+..+..
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~ 93 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPF 93 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCe
Confidence 455566666521 2579999975 6555556789999999999999999999988754
No 323
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=54.80 E-value=39 Score=32.30 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=34.9
Q ss_pred CccEEEEecc-----c--eeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 29 RFKAWLLDQF-----G--VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 29 ~~~~vlfDlD-----G--vL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
..+++.+|+| | ...-..+-+|...++++.|+++|+++++..+..
T Consensus 39 P~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 39 PLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred CccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 3589999986 3 443345679999999999999999999877643
No 324
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=54.35 E-value=2.2e+02 Score=27.95 Aligned_cols=200 Identities=18% Similarity=0.207 Sum_probs=97.4
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHH----HHhhcCChhhhhcCCeE-
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ----YLLRRDDAWFAALGRSC- 121 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~----~L~~~~~~~~~~~G~~v- 121 (332)
.+....+.+..|+++|.++++||+.. +..-++.+|++..+ ..+-. .++.+. .|-+.+...+...|..+
T Consensus 29 ~l~~l~~~ia~L~~~G~eVilVSSGA-----iaaG~~~Lg~~~rp-~~l~~-kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~ 101 (369)
T COG0263 29 KLEELVRQVAALHKAGHEVVLVSSGA-----IAAGRTRLGLPKRP-KTLAE-KQAAAAVGQVRLMQLYEELFARYGIKVG 101 (369)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEccch-----hhhChhhcCCCCCC-cchHH-HHHHHHhCHHHHHHHHHHHHHhcCCeee
Confidence 45667789999999999999999753 44567789998765 33222 222221 12222211122223332
Q ss_pred -EEeecCcc-cc----------hhhhcCCc-cccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcE
Q 019991 122 -IHMTWSDR-GA----------ISLEGLGL-KVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM 188 (332)
Q Consensus 122 -~~~g~~~~-~~----------~~l~~~g~-~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~l 188 (332)
++++.+.. .. ..|-+.|+ ++.+ +-|.+.+... .++ +.+.+...+..+......+
T Consensus 102 QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIIN---ENDtva~~Ei-kfG---------DND~LsA~VA~lv~ADlLv 168 (369)
T COG0263 102 QILLTRDDFSDRRRYLNARNTLSALLELGVVPIIN---ENDTVATEEI-KFG---------DNDTLSALVAILVGADLLV 168 (369)
T ss_pred EEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeec---CCCceeeeee-eec---------CCchHHHHHHHHhCCCEEE
Confidence 22332111 00 12334443 2222 2233333111 000 1256676676677778778
Q ss_pred EEecCCccceeccc------eecCCChhHHHHHHh-cCcc--cccCCC-CHHHHHHHHHHhCCe--EEEeCChhhHHHHH
Q 019991 189 VVANPDYVTVEARA------LRVMPGTLASKFEKL-GGEV--RWMGKP-DKLWATLFTMILRVQ--MQLESSPYSLLEGS 256 (332)
Q Consensus 189 IaTN~D~~~~~~~~------~~l~~G~i~~~~e~~-g~e~--~~~GKP-~p~if~~Al~~lg~~--lmIGDs~~~DI~gA 256 (332)
+.|.-|..|..... ++...-.+..-++.+ |... ...|-- +...-...+-+.|+. ++=|+++. .+..+
T Consensus 169 lLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~-~i~~~ 247 (369)
T COG0263 169 LLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPD-VILDA 247 (369)
T ss_pred EEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcc-hHHHH
Confidence 88888777644321 112222355555553 4332 333321 111112223345663 55667742 47777
Q ss_pred HHcCCcEEEEe
Q 019991 257 MQLNLDLTVME 267 (332)
Q Consensus 257 ~~aG~~ti~~~ 267 (332)
.+.+-...|+.
T Consensus 248 ~~~~~~GT~F~ 258 (369)
T COG0263 248 LEGEAVGTLFE 258 (369)
T ss_pred HhCCCCccEEe
Confidence 77665555554
No 325
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=53.91 E-value=59 Score=31.06 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=31.2
Q ss_pred cCcCHHHHHHHHHH-CCC-eEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 47 PYPGAISTLEMLAT-TGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 47 ~ipGa~e~L~~L~~-~G~-~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
+.++..++++.+++ .|+ .+.+.||..... +..+.|.+.|+.
T Consensus 72 l~~~l~~li~~i~~~~gi~~v~itTNG~ll~-~~~~~L~~~gl~ 114 (334)
T TIGR02666 72 LRKDLVELVARLAALPGIEDIALTTNGLLLA-RHAKDLKEAGLK 114 (334)
T ss_pred ccCCHHHHHHHHHhcCCCCeEEEEeCchhHH-HHHHHHHHcCCC
Confidence 35788899999987 578 889999976543 356778888875
No 326
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=53.66 E-value=41 Score=33.59 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=42.1
Q ss_pred eccceeecCC---ccCcCHHHHHHHHHHCCCeEEEE-eCCC-CChhHHHHHHHhCCCCcc
Q 019991 36 DQFGVLHDGK---KPYPGAISTLEMLATTGAKMVVI-SNSS-RRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 36 DlDGvL~~g~---~~ipGa~e~L~~L~~~G~~v~~v-TN~s-~~~~~~~~~L~~lGl~~~ 90 (332)
+.+|+.+.|. ...|.+.++++.+++.|+++++. ||++ -...+..+++...|++..
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v 132 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREV 132 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEE
Confidence 4667766665 34788999999999999999996 9976 335566788888877643
No 327
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=53.37 E-value=28 Score=31.59 Aligned_cols=41 Identities=5% Similarity=-0.062 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 229 KLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 229 p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
-...+.+++++|+ .++|||+ ..|+...+.+|+..+.-|...
T Consensus 190 ~~~i~~~~~~~~~~~~~~~~~GD~-~nD~~m~~~~~~~~a~~na~~ 234 (256)
T TIGR00099 190 GSALQSLAEALGISLEDVIAFGDG-MNDIEMLEAAGYGVAMGNADE 234 (256)
T ss_pred HHHHHHHHHHcCCCHHHEEEeCCc-HHhHHHHHhCCceeEecCchH
Confidence 4456667777776 6899999 579999999998765555433
No 328
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=53.22 E-value=26 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=29.3
Q ss_pred EEEEeccceeecCC-ccCcCHHHHHHHHHHCCCeEEEEeC
Q 019991 32 AWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISN 70 (332)
Q Consensus 32 ~vlfDlDGvL~~g~-~~ipGa~e~L~~L~~~G~~v~~vTN 70 (332)
.++||+||||.... ...|...++|+.||+ ...+.+|-.
T Consensus 13 l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~-~v~ig~Vgg 51 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPRQKVTPEMLEFLQKLRK-KVTIGFVGG 51 (252)
T ss_pred EEEEecCCccccccccCCHHHHHHHHHHhh-heEEEEeec
Confidence 79999999999855 677888899998764 355666654
No 329
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=51.98 E-value=1.3e+02 Score=28.06 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCcEE-EecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCeEEEeCCh--
Q 019991 173 DLEKILEICASKKIPMV-VANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQMQLESSP-- 249 (332)
Q Consensus 173 ~l~~~l~~l~~~g~~lI-aTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~lmIGDs~-- 249 (332)
+..++.+.|.++|...+ .+++|......-. .+++-.+..+-+-+|. ..|--+|+.++.+.+..++++++|=.+
T Consensus 111 ~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~-~~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~~vpVI~egGI~t 186 (248)
T cd04728 111 ETLKAAEILVKEGFTVLPYCTDDPVLAKRLE-DAGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERADVPVIVDAGIGT 186 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhCCCcEEEeCCCCC
Confidence 33444455667798866 6776765432210 1222122110011221 135446999998888877888887654
Q ss_pred hhHHHHHHHcCCcEEEEec
Q 019991 250 YSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 250 ~~DI~gA~~aG~~ti~~~~ 268 (332)
..|+.-|.+.|.+.++++.
T Consensus 187 peda~~AmelGAdgVlV~S 205 (248)
T cd04728 187 PSDAAQAMELGADAVLLNT 205 (248)
T ss_pred HHHHHHHHHcCCCEEEECh
Confidence 5799999999999999864
No 330
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=51.93 E-value=25 Score=32.73 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=37.4
Q ss_pred EEEeccceeecCCcc---CcCHHHHHHHHHHCCCeEEEEeCCCCChhHH
Q 019991 33 WLLDQFGVLHDGKKP---YPGAISTLEMLATTGAKMVVISNSSRRASTT 78 (332)
Q Consensus 33 vlfDlDGvL~~g~~~---ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~ 78 (332)
.-..++||-+.+.+| ++.+.++++..++.|+++++.||..-+.+..
T Consensus 80 ~~~~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~ 128 (260)
T COG1180 80 YSESGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEAL 128 (260)
T ss_pred hcCCCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHH
Confidence 333899999999987 5677889999999999999999987554433
No 331
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=51.82 E-value=9.4 Score=38.59 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=19.9
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
-|....+|+.|++.|+++.++|||+.
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~ 210 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPF 210 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-H
T ss_pred CchHHHHHHHHHhcCceEEEecCCCC
Confidence 35678899999999999999999874
No 332
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=51.12 E-value=23 Score=30.02 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=37.0
Q ss_pred ccccHHHHhhhcCccEEEEeccceeecCCccC-cCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 17 ~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~i-pGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
+.+.+.+.++ ++.. .+.||...|.+.. +...++++.+++.|+++.+.||..
T Consensus 47 t~eel~~~I~--~~~~---~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 47 TPEYLTKTLD--KYRS---LISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CHHHHHHHHH--HhCC---CCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4556666666 3331 2479999888754 446789999999999999999843
No 333
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=50.96 E-value=18 Score=33.20 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=30.9
Q ss_pred ccceeecCCcc--CcCHHHHHHHHHHCCCeEEEEeCCCCCh
Q 019991 37 QFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRA 75 (332)
Q Consensus 37 lDGvL~~g~~~--ipGa~e~L~~L~~~G~~v~~vTN~s~~~ 75 (332)
...|...|.+| .++..++++++++.|+++.+.||++...
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 34565666654 3789999999999999999999998644
No 334
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=50.84 E-value=38 Score=26.56 Aligned_cols=82 Identities=17% Similarity=0.085 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCc--ccccCCCCHHHHHHHHHHhCC--eE
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGE--VRWMGKPDKLWATLFTMILRV--QM 243 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e--~~~~GKP~p~if~~Al~~lg~--~l 243 (332)
-.+++..++++.|+++|.++ ++||.....+. .+.+.++.+|-. +..+=-|....-++..++.+. .+
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~---------~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~ 84 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSRE---------EYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVY 84 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HH---------HHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHH---------HHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEE
Confidence 35789999999999999986 78997543222 244555544321 111112333344444443333 56
Q ss_pred EEeCChhhHHHHHHHcCC
Q 019991 244 QLESSPYSLLEGSMQLNL 261 (332)
Q Consensus 244 mIGDs~~~DI~gA~~aG~ 261 (332)
+||-. ...+..+.+|+
T Consensus 85 vlG~~--~l~~~l~~~G~ 100 (101)
T PF13344_consen 85 VLGSD--GLREELREAGF 100 (101)
T ss_dssp EES-H--HHHHHHHHTTE
T ss_pred EEcCH--HHHHHHHHcCC
Confidence 77776 34555666664
No 335
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=28 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCccCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 44 g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
...+=||..+++++++++++|++++|++..+
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCch
Confidence 3466799999999999999999999986543
No 336
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=49.79 E-value=1.6e+02 Score=24.86 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=37.2
Q ss_pred eccceeecCCccC--c--CHHHHHHHHHHC-----CCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 36 DQFGVLHDGKKPY--P--GAISTLEMLATT-----GAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 36 DlDGvL~~g~~~i--p--Ga~e~L~~L~~~-----G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
+++.+.+.+.++. + ...++++.+++. +..+.+.||.....++..+.|.+.|+..
T Consensus 51 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~ 113 (216)
T smart00729 51 LVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNR 113 (216)
T ss_pred ceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCe
Confidence 5566666555432 2 357788888877 4567788886544567788899998863
No 337
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=49.69 E-value=25 Score=38.65 Aligned_cols=95 Identities=6% Similarity=0.031 Sum_probs=54.6
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceecc--ceecCC-------Ch-hH----HHHHHhcCcccccCCCCHHHHH
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEAR--ALRVMP-------GT-LA----SKFEKLGGEVRWMGKPDKLWAT 233 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~--~~~l~~-------G~-i~----~~~e~~g~e~~~~GKP~p~if~ 233 (332)
-.+++..++++.|++.|+++ +.|+........- ...+.. |. +. +-++..-.+..+++.++|+-=.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 35799999999999999986 5666544322211 010110 10 00 0111111122455666666545
Q ss_pred HHHHHh---CC-eEEEeCChhhHHHHHHHcCCcEE
Q 019991 234 LFTMIL---RV-QMQLESSPYSLLEGSMQLNLDLT 264 (332)
Q Consensus 234 ~Al~~l---g~-~lmIGDs~~~DI~gA~~aG~~ti 264 (332)
.+.+.+ |- ..|+||.. +|+.+.++|++--.
T Consensus 608 ~iv~~lq~~g~~v~mvGDGv-ND~pAl~~AdVGia 641 (884)
T TIGR01522 608 KIVKALQKRGDVVAMTGDGV-NDAPALKLADIGVA 641 (884)
T ss_pred HHHHHHHHCCCEEEEECCCc-ccHHHHHhCCeeEe
Confidence 544444 43 68999995 79999999987433
No 338
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=49.16 E-value=1.3e+02 Score=28.00 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCCcEE-EecCCccceeccceecCCChhHHHHHHhcC-------ccc--ccCCCCHHHHHHHHHHhCCe
Q 019991 173 DLEKILEICASKKIPMV-VANPDYVTVEARALRVMPGTLASKFEKLGG-------EVR--WMGKPDKLWATLFTMILRVQ 242 (332)
Q Consensus 173 ~l~~~l~~l~~~g~~lI-aTN~D~~~~~~~~~~l~~G~i~~~~e~~g~-------e~~--~~GKP~p~if~~Al~~lg~~ 242 (332)
+..++.+.|.+.|..++ =+|.|... ++.++.+|. .|+ ..|-=+|..++.+.++..++
T Consensus 118 etl~Aae~Lv~eGF~VlPY~~dD~v~-------------arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VP 184 (262)
T COG2022 118 ETLKAAEQLVKEGFVVLPYTTDDPVL-------------ARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVP 184 (262)
T ss_pred HHHHHHHHHHhCCCEEeeccCCCHHH-------------HHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCC
Confidence 34455566778897643 36666653 344444433 232 34566999999999999886
Q ss_pred EEEeC--ChhhHHHHHHHcCCcEEEEecc
Q 019991 243 MQLES--SPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 243 lmIGD--s~~~DI~gA~~aG~~ti~~~~~ 269 (332)
++|-= -..+|..-|.+.|.+.+++|-.
T Consensus 185 viVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 185 VIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred EEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 65432 2258999999999999999753
No 339
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=48.93 E-value=47 Score=33.56 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=61.8
Q ss_pred ccccCCCCCccccccccHHHHhhh-----cCccEEEEeccceeecCC-ccCcCH-HHHHHHHHHCCCeEEEEeCCCCCh-
Q 019991 4 KCSVQSNDPHLFQTLNGLRHIAET-----RRFKAWLLDQFGVLHDGK-KPYPGA-ISTLEMLATTGAKMVVISNSSRRA- 75 (332)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vlfDlDGvL~~g~-~~ipGa-~e~L~~L~~~G~~v~~vTN~s~~~- 75 (332)
-|.|-|.|.+-+.+-+..+++=-. -+-=+++.--||++-+-. .-|-.| ...++.|++.|+|++++-|+.++.
T Consensus 115 pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s 194 (492)
T PF09547_consen 115 PRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS 194 (492)
T ss_pred ceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence 367889999888777766665331 123488999999998754 234444 358999999999999999987532
Q ss_pred ---hHHHHHHH-hCCCCccc
Q 019991 76 ---STTIDKLK-SLGFDPSL 91 (332)
Q Consensus 76 ---~~~~~~L~-~lGl~~~~ 91 (332)
.++.+.|+ +.+.+..+
T Consensus 195 ~et~~L~~eL~ekY~vpVlp 214 (492)
T PF09547_consen 195 EETQELAEELEEKYDVPVLP 214 (492)
T ss_pred HHHHHHHHHHHHHhCCcEEE
Confidence 34566663 56776553
No 340
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.49 E-value=59 Score=31.03 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=46.7
Q ss_pred cccHHHHhhhc-----CccEEEEecc-----------ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC--ChhHHH
Q 019991 18 LNGLRHIAETR-----RFKAWLLDQF-----------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR--RASTTI 79 (332)
Q Consensus 18 ~~~~~~~~~~~-----~~~~vlfDlD-----------GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~--~~~~~~ 79 (332)
.+.+.++++.. ..+++.+|.| |+..=..+-+|.-.++++.|+++|+++++..+... ..+.+
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y- 101 (317)
T cd06598 23 WQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNW- 101 (317)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhH-
Confidence 34455555411 3588999975 34444557899999999999999999999888542 22333
Q ss_pred HHHHhCCC
Q 019991 80 DKLKSLGF 87 (332)
Q Consensus 80 ~~L~~lGl 87 (332)
+.+.+.|+
T Consensus 102 ~e~~~~g~ 109 (317)
T cd06598 102 GEAVKAGA 109 (317)
T ss_pred HHHHhCCC
Confidence 44566665
No 341
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=47.19 E-value=67 Score=34.59 Aligned_cols=85 Identities=7% Similarity=-0.103 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHHhCCeEEEeC
Q 019991 169 MSLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMILRVQMQLES 247 (332)
Q Consensus 169 ~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~lg~~lmIGD 247 (332)
-.+++..++++.|++.|+++ ++|+.+......- ...-++... .+ ...-.||. +.+. +++-+..+||||
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~i---a~~lgi~~~---~~--~~p~~K~~--~v~~-l~~~~~v~mvGD 636 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAI---AGELGIDFR---AG--LLPEDKVK--AVTE-LNQHAPLAMVGD 636 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHHcCCCee---cC--CCHHHHHH--HHHH-HhcCCCEEEEEC
Confidence 34689999999999999986 5565333221110 000011100 01 11112332 3333 233345789999
Q ss_pred ChhhHHHHHHHcCCcEEE
Q 019991 248 SPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 248 s~~~DI~gA~~aG~~ti~ 265 (332)
.. +|+.+.+++++--.+
T Consensus 637 gi-NDapAl~~A~vgia~ 653 (741)
T PRK11033 637 GI-NDAPAMKAASIGIAM 653 (741)
T ss_pred CH-HhHHHHHhCCeeEEe
Confidence 95 799999999855443
No 342
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=46.82 E-value=33 Score=38.28 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|.+--.+++.|++.++++.++++|+++.++|.... .......+++|+-
T Consensus 561 Gli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~--~ta~~ia~~~gi~ 608 (997)
T TIGR01106 561 GLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHP--ITAKAIAKGVGII 608 (997)
T ss_pred EEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCCC
Confidence 55556678999999999999999999999997543 2334555678874
No 343
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=46.71 E-value=1.2e+02 Score=29.28 Aligned_cols=97 Identities=18% Similarity=0.100 Sum_probs=58.9
Q ss_pred cccCHHHHHHHH---HHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCC--CCHHHHHHHHHHhC
Q 019991 167 RPMSLQDLEKIL---EICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGK--PDKLWATLFTMILR 240 (332)
Q Consensus 167 ~~~~y~~l~~~l---~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GK--P~p~if~~Al~~lg 240 (332)
....++++.+++ +.|.++|... +.+++|......- ...|..+-+- -.+++.-|+ -+|+.++.+.+...
T Consensus 176 ~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l---~~~g~~avmP---l~~pIGsg~gv~~p~~i~~~~e~~~ 249 (326)
T PRK11840 176 AKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRL---EDAGAVAVMP---LGAPIGSGLGIQNPYTIRLIVEGAT 249 (326)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH---HhcCCEEEee---ccccccCCCCCCCHHHHHHHHHcCC
Confidence 334445444444 4456779875 6677776543321 1122210000 012222222 38999999999988
Q ss_pred CeEEEeCCh--hhHHHHHHHcCCcEEEEecc
Q 019991 241 VQMQLESSP--YSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 241 ~~lmIGDs~--~~DI~gA~~aG~~ti~~~~~ 269 (332)
+++++|=-+ ..|+.-|.+.|.+.+++|..
T Consensus 250 vpVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 250 VPVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 877776543 57999999999999999753
No 344
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=46.57 E-value=55 Score=30.16 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=22.4
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
..-|..+..+.+++..-.+-+.| +..++.+.|+++|..-
T Consensus 84 ~~~G~~~~~~~i~~~~~g~p~tt----~~~A~~~AL~alg~~R 122 (239)
T TIGR02990 84 VVIGDDEVTRAINAAKPGTPVVT----PSSAAVDGLAALGVRR 122 (239)
T ss_pred eecCHHHHHHHHHhcCCCCCeeC----HHHHHHHHHHHcCCCE
Confidence 35566777777775321122222 2356777888888763
No 345
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.88 E-value=7.4 Score=39.26 Aligned_cols=91 Identities=8% Similarity=0.036 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCcEEEecCCccceeccceecCCChhHH-HHHHhc----------CcccccCCCCHHHHHHHHHHhCC
Q 019991 173 DLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLAS-KFEKLG----------GEVRWMGKPDKLWATLFTMILRV 241 (332)
Q Consensus 173 ~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l~~G~i~~-~~e~~g----------~e~~~~GKP~p~if~~Al~~lg~ 241 (332)
+..++++.++..+.++|.-+ |...|.. +.+ .+...| +......|-|-.+|...++.-++
T Consensus 103 ~~~eL~e~ai~n~krVIlIS-DMYlps~---------Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnV 172 (635)
T COG5610 103 KNIELVEEAIKNEKRVILIS-DMYLPSS---------ILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENV 172 (635)
T ss_pred cchHHHHHHHhCCCeEEEEe-cccCcHH---------HHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCC
Confidence 44667778888888876543 5555543 222 111111 22345679999999999998887
Q ss_pred ----eEEEeCChhhHHHHHHHcCCcEEEEecchhhHHH
Q 019991 242 ----QMQLESSPYSLLEGSMQLNLDLTVMEKLQIYLLF 275 (332)
Q Consensus 242 ----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~~~~~~ 275 (332)
-+.+||+...|+..+++.|+.|... +.+|+-.
T Consensus 173 d~~~w~H~GDN~~aD~l~pk~LgI~Tlf~--~s~l~~~ 208 (635)
T COG5610 173 DPKKWIHCGDNWVADYLKPKNLGISTLFY--ISQLLPY 208 (635)
T ss_pred ChhheEEecCchhhhhcCccccchhHHHH--HHHhhhH
Confidence 3799999999999999999999876 4454443
No 346
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=45.67 E-value=34 Score=31.60 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-----eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 231 WATLFTMILRV-----QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 231 if~~Al~~lg~-----~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
..+.+++.+|+ +++|||+ .+|+..++.+|+..+.-|-.
T Consensus 194 al~~l~~~~~i~~~~~v~~~GDs-~NDi~m~~~ag~~vam~NA~ 236 (273)
T PRK00192 194 AVRWLKELYRRQDGVETIALGDS-PNDLPMLEAADIAVVVPGPD 236 (273)
T ss_pred HHHHHHHHHhccCCceEEEEcCC-hhhHHHHHhCCeeEEeCCCC
Confidence 45666666654 4799999 57999999999888876644
No 347
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=45.57 E-value=23 Score=32.47 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=41.2
Q ss_pred ecCCccCcCHHHHHHHHHHCCC-eEEEEeCCCCChhHHHHHHHhCCCCcccccccccc
Q 019991 42 HDGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (332)
Q Consensus 42 ~~g~~~ipGa~e~L~~L~~~G~-~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits 98 (332)
+.+.+..||..++|+.+++.|- .+.++|.+-.. -+.+.|++.|+... |..|+|.
T Consensus 80 ~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsf--FIe~~Lea~~~~d~-F~~IfTN 134 (256)
T KOG3120|consen 80 LRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSF--FIEEILEAAGIHDL-FSEIFTN 134 (256)
T ss_pred HhcCCCCccHHHHHHHHHhCCCceEEEEecCchh--HHHHHHHHccHHHH-HHHHhcC
Confidence 3467889999999999999994 89999985332 13456888999877 6666664
No 348
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=44.85 E-value=3.7 Score=32.80 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=22.7
Q ss_pred ceeecCCccC-----cCHHHHHHHHHHCC--CeEEEEeCCCCC
Q 019991 39 GVLHDGKKPY-----PGAISTLEMLATTG--AKMVVISNSSRR 74 (332)
Q Consensus 39 GvL~~g~~~i-----pGa~e~L~~L~~~G--~~v~~vTN~s~~ 74 (332)
++.+.|.+|. +...++++.+++.+ +.+.+.||....
T Consensus 50 ~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 50 TVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred EEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 3445555554 34668888888888 999999998764
No 349
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.81 E-value=47 Score=31.34 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=39.7
Q ss_pred cccHHHHhhhc-----CccEEEEecc--------------ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 18 LNGLRHIAETR-----RFKAWLLDQF--------------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 18 ~~~~~~~~~~~-----~~~~vlfDlD--------------GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
.+.+.++++.. ..+++.+|+| |+..=..+-+|+..++++.|+++|.++++..+-.
T Consensus 24 ~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 24 DEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 34555555521 3589999986 2333344689999999999999999999888743
No 350
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=43.69 E-value=1e+02 Score=29.36 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred CcCHHHHHHHHHHC--CCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 48 YPGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 48 ipGa~e~L~~L~~~--G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.++..++++.+++. ...+.+.||+.... ...+.|.+.|+.
T Consensus 79 ~~~l~~li~~i~~~~~~~~i~itTNG~ll~-~~~~~L~~agl~ 120 (331)
T PRK00164 79 RKDLEDIIAALAALPGIRDLALTTNGYLLA-RRAAALKDAGLD 120 (331)
T ss_pred ccCHHHHHHHHHhcCCCceEEEEcCchhHH-HHHHHHHHcCCC
Confidence 47889999999986 35788999976432 356677777774
No 351
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=43.28 E-value=42 Score=31.42 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=34.8
Q ss_pred eccceeecCCccC--cCH-HHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH
Q 019991 36 DQFGVLHDGKKPY--PGA-ISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (332)
Q Consensus 36 DlDGvL~~g~~~i--pGa-~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~ 83 (332)
...||.+.|.+|. +.. .++++++++.|+++.+.||+....+.+.+.+.
T Consensus 125 ~~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~ 175 (295)
T TIGR02494 125 SGGGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLP 175 (295)
T ss_pred CCCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHh
Confidence 3468888887664 554 58999999999999999998754444444443
No 352
>PRK07094 biotin synthase; Provisional
Probab=42.55 E-value=2.6e+02 Score=26.37 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=58.6
Q ss_pred CcCHHHHHHHHHHC-CCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCChhhhhcCCeEEEeec
Q 019991 48 YPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTW 126 (332)
Q Consensus 48 ipGa~e~L~~L~~~-G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~ 126 (332)
.+...++++.+++. ++.+.+ +. ....++..+.|++.|+.... -.+=+..+...+.+.+... ...
T Consensus 102 ~~~l~~l~~~i~~~~~l~i~~-~~-g~~~~e~l~~Lk~aG~~~v~-~glEs~~~~~~~~i~~~~s------------~~~ 166 (323)
T PRK07094 102 DEKIADIIKEIKKELDVAITL-SL-GERSYEEYKAWKEAGADRYL-LRHETADKELYAKLHPGMS------------FEN 166 (323)
T ss_pred HHHHHHHHHHHHccCCceEEE-ec-CCCCHHHHHHHHHcCCCEEE-eccccCCHHHHHHhCCCCC------------HHH
Confidence 45677888999884 555443 22 22345667889999987542 2333333333333332111 000
Q ss_pred CcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcEEEec
Q 019991 127 SDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVAN 192 (332)
Q Consensus 127 ~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~lIaTN 192 (332)
-.+....+++.|+.+. + .++++ + +..+.+++.+.++.+.+-+...+..+
T Consensus 167 ~~~~i~~l~~~Gi~v~-----~-~~iiG----------l-pget~ed~~~~l~~l~~l~~~~v~~~ 215 (323)
T PRK07094 167 RIACLKDLKELGYEVG-----S-GFMVG----------L-PGQTLEDLADDILFLKELDLDMIGIG 215 (323)
T ss_pred HHHHHHHHHHcCCeec-----c-eEEEE----------C-CCCCHHHHHHHHHHHHhCCCCeeeee
Confidence 0011124556676432 1 23342 1 24466888888888766666544433
No 353
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=42.53 E-value=1.3e+02 Score=29.42 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=29.7
Q ss_pred CcCHHHHHHHHHHC-CCe-EEEEeCCCCChhHHHHHHHhCCCC
Q 019991 48 YPGAISTLEMLATT-GAK-MVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 48 ipGa~e~L~~L~~~-G~~-v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.++..++++.+++. |++ +.+.||+....+ ....|.+.|+.
T Consensus 120 r~dl~eli~~l~~~~gi~~i~itTNG~lL~~-~~~~L~~aGld 161 (373)
T PLN02951 120 RKDIEDICLQLSSLKGLKTLAMTTNGITLSR-KLPRLKEAGLT 161 (373)
T ss_pred hhhHHHHHHHHHhcCCCceEEEeeCcchHHH-HHHHHHhCCCC
Confidence 57788999999986 875 778888765433 35677777775
No 354
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=42.35 E-value=17 Score=37.24 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.6
Q ss_pred CccEEEEeccceeecCCccCc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYP 49 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ip 49 (332)
.-+.++||+||||..+...+|
T Consensus 21 ~~~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 21 SNQTVAADLDGTLLISRSAFP 41 (497)
T ss_pred cccEEEEecCCcccCCCCccH
Confidence 356899999999999877666
No 355
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=42.28 E-value=30 Score=32.19 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=29.7
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
..++|++..|. ...++|+.++++.|++.|. ..++||..+
T Consensus 131 ~~~~Vvv~~d~-----~~~y~~i~~~l~~L~~~g~-~~i~Tn~d~ 169 (279)
T TIGR01452 131 NVGAVVVGYDE-----HFSYAKLREACAHLREPGC-LFVATNRDP 169 (279)
T ss_pred CCCEEEEecCC-----CCCHHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence 35566665543 3448999999999998887 789999765
No 356
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=41.13 E-value=58 Score=24.71 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=41.4
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
.+.+++|+-++-+-......-..++.+.+++.|.++.+..=+ +.+.+.+...|+...
T Consensus 41 ~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~g~~~~ 97 (107)
T cd07042 41 LKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGLN----PQVRELLERAGLLDE 97 (107)
T ss_pred ceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecCC----HHHHHHHHHcCcHHH
Confidence 378899999987777666666677888888899887777422 245677788887643
No 357
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=38.81 E-value=39 Score=34.27 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=36.1
Q ss_pred ccEEEE----eccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 30 FKAWLL----DQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 30 ~~~vlf----DlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.+.+.+ ..=|.+.-.+++.|++.+.+++|++.|+++.++|....
T Consensus 327 ~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~ 374 (499)
T TIGR01494 327 LRVLAVASKETLLGLLGLEDPLRDDAKETISELREAGIRVIMLTGDNV 374 (499)
T ss_pred CEEEEEEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCH
Confidence 444444 45577778889999999999999999999999998654
No 358
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=38.42 E-value=20 Score=31.93 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=45.2
Q ss_pred cHHHHhhhcCccEEEEeccceeecCC--------ccCcCHHHHHHHHHHCCCeEEEEeCCCCChh
Q 019991 20 GLRHIAETRRFKAWLLDQFGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRRAS 76 (332)
Q Consensus 20 ~~~~~~~~~~~~~vlfDlDGvL~~g~--------~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~ 76 (332)
-+.+++++.+.+..+=-+.|-+|-.. ++||.|.++|++-++.|.++++-|++|...+
T Consensus 69 ~~~~wiaed~K~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQ 133 (229)
T COG4229 69 LLLEWIAEDSKDTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQ 133 (229)
T ss_pred HHHHHHhcccccchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhH
Confidence 44566664456677777888888633 7899999999999999999999999876543
No 359
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=38.30 E-value=34 Score=30.08 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=32.1
Q ss_pred HHHHHhCCeEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 234 LFTMILRVQMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 234 ~Al~~lg~~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
.+.+.+++.+.+.|+...-.+.|+++|++.+++|..+
T Consensus 128 ~~vrth~idlf~ed~~~na~~iAk~~~~~vilins~y 164 (194)
T COG5663 128 EAVRTHNIDLFFEDSHDNAGQIAKNAGIPVILINSPY 164 (194)
T ss_pred hhhHhhccCccccccCchHHHHHHhcCCcEEEecCcc
Confidence 4567778899999999888999999999999998653
No 360
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=37.72 E-value=94 Score=30.94 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=49.5
Q ss_pred cccCCCCCcccccc-------------ccHHHHhhhcCccEEEEeccceeecCCccCcCH----HHHHHHHHHCCCeEEE
Q 019991 5 CSVQSNDPHLFQTL-------------NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGA----ISTLEMLATTGAKMVV 67 (332)
Q Consensus 5 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa----~e~L~~L~~~G~~v~~ 67 (332)
+.+++||-|.+... +.+.+.+...+.|++++--| |++...+-..+ .+++..|++.+.++++
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGD--ifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~ 79 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGD--IFDTGSPPSYARELYNRFVVNLQQTGCQLVV 79 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCc--cccCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 46788999988432 22333333235777776444 45554443333 3566778888999999
Q ss_pred EeCCCCCh---hHHHHHHHhCCCCc
Q 019991 68 ISNSSRRA---STTIDKLKSLGFDP 89 (332)
Q Consensus 68 vTN~s~~~---~~~~~~L~~lGl~~ 89 (332)
+..|.-.. ......|+..|+..
T Consensus 80 I~GNHD~~~~l~~~~~~l~~~gi~v 104 (407)
T PRK10966 80 LAGNHDSVATLNESRDLLAFLNTTV 104 (407)
T ss_pred EcCCCCChhhhhhHHHHHHHCCcEE
Confidence 99885322 22345566677643
No 361
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=37.59 E-value=61 Score=36.44 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=38.4
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.+.-.+++.|++.++|+.|+++|+++.++|.....+ ....-++.|+-.
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~T--A~~iA~~~gii~ 697 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLT--AVHVARECGIVN 697 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCC
Confidence 7777788999999999999999999999999854322 223346788843
No 362
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=37.40 E-value=63 Score=36.26 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=39.4
Q ss_pred cEEE--EeccceeecCCccCcCHHHHHHHHHH--CCCeEEEEeCCCCChhHHHHHHHhCCCCcccccccccc
Q 019991 31 KAWL--LDQFGVLHDGKKPYPGAISTLEMLAT--TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (332)
Q Consensus 31 ~~vl--fDlDGvL~~g~~~ipGa~e~L~~L~~--~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits 98 (332)
+.++ .|+|.+ .+ ..+...++++++++ ....+.|+=.++++..++.+.|++.|++...++.+|++
T Consensus 771 ~~~via~D~d~~--~~--~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 771 RLFVIAVDCYDD--KD--LLQIIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICN 838 (1050)
T ss_pred eEEEEEeccCCC--CC--hHHHHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 4455 699998 22 44455667788862 33344444444566667788899999984223665543
No 363
>PRK11660 putative transporter; Provisional
Probab=36.81 E-value=75 Score=33.00 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=44.5
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
+.+.+++|+.+|-.-+..-..-..++.+.+++ |.++.+..=+ +.+.+.|++.|+..
T Consensus 490 ~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~----~~v~~~l~~~gl~~ 545 (568)
T PRK11660 490 GKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQ----FQPLRTLARAGIQP 545 (568)
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCC----hHHHHHHHHCCChh
Confidence 57899999999988888888888889999999 9877766522 34677888888865
No 364
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=35.98 E-value=43 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=18.9
Q ss_pred eEEEeCChhhHHHHHHHcCCcEE
Q 019991 242 QMQLESSPYSLLEGSMQLNLDLT 264 (332)
Q Consensus 242 ~lmIGDs~~~DI~gA~~aG~~ti 264 (332)
++++||+ .+|+.+-+.+|+..+
T Consensus 202 ~i~~GD~-~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 202 SVGLGDS-ENDFPMFEVVDLAFL 223 (225)
T ss_pred EEEEcCC-HHHHHHHHhCCCcEe
Confidence 5899999 589999999998643
No 365
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=35.36 E-value=52 Score=29.83 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=29.0
Q ss_pred ccceeecCCcc--CcCH-HHHHHHHHHCCCeEEEEeCCCC
Q 019991 37 QFGVLHDGKKP--YPGA-ISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 37 lDGvL~~g~~~--ipGa-~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.+||-+.|.+| .++. .++++.+++.|+++.+.||+..
T Consensus 71 ~~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 71 GGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred CCeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45777777766 3443 4889999999999999999874
No 366
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=35.07 E-value=70 Score=29.63 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCCcc
Q 019991 50 GAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPS 90 (332)
Q Consensus 50 Ga~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~~~ 90 (332)
...++|+.|...|+++.-+|..+. ......+.|+++|+.-.
T Consensus 85 ~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs 126 (252)
T PF11019_consen 85 DVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFS 126 (252)
T ss_pred hHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCcc
Confidence 334578888899999999998764 34456788999999854
No 367
>PRK10976 putative hydrolase; Provisional
Probab=35.02 E-value=58 Score=29.69 Aligned_cols=41 Identities=7% Similarity=-0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEecch
Q 019991 229 KLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEKLQ 270 (332)
Q Consensus 229 p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~~~ 270 (332)
....+.+++.+|+ +++|||+ ..|+.+=+.+|...+.-|...
T Consensus 192 g~al~~l~~~lgi~~~~viafGD~-~NDi~Ml~~ag~~vAm~NA~~ 236 (266)
T PRK10976 192 GHALEAVAKKLGYSLKDCIAFGDG-MNDAEMLSMAGKGCIMGNAHQ 236 (266)
T ss_pred HHHHHHHHHHcCCCHHHeEEEcCC-cccHHHHHHcCCCeeecCCcH
Confidence 4567777788887 6899999 589999999998655555544
No 368
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=34.93 E-value=88 Score=27.84 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=36.7
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcC
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~ 110 (332)
.+++.++.+.|.+.|+++. .|.+ ..+.|++.|++...-..+....+....-++..+
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~G------TAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLH 65 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGG------TAKFLKEAGIPVTDVSDITGFPEILGGRVKTLH 65 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccH------HHHHHHHcCCeEEEhhhccCCcHhhCCccccCC
Confidence 7899999999999999984 5533 346788999986542333334444444344443
No 369
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=33.58 E-value=2.2e+02 Score=26.38 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=64.1
Q ss_pred cccCHHHHHHHHHHHHhCCCcEEEecCCccceeccceec---CCChhHHHHHHhcCcccccC-CCCHHHHHHHHHHhCC-
Q 019991 167 RPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRV---MPGTLASKFEKLGGEVRWMG-KPDKLWATLFTMILRV- 241 (332)
Q Consensus 167 ~~~~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~~~~~~l---~~G~i~~~~e~~g~e~~~~G-KP~p~if~~Al~~lg~- 241 (332)
....|+++..+++.....|+++..=|++...... +.+ ..|.+.+++... =+..+| |--...|..+.+.+|.
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqK--llfg~s~~gdl~~y~~gy--fDt~iG~K~e~~sy~~I~~~Ig~s 196 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQK--LLFGYSDAGDLRKYISGY--FDTTIGLKVESQSYKKIGHLIGKS 196 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHHH--HHHcccCcchHHHHhhhh--hhccccceehhHHHHHHHHHhCCC
Confidence 3456889999998877889997665555554332 122 445555554431 111222 4456678888888887
Q ss_pred ---eEEEeCChhhHHHHHHHcCCcEEEE
Q 019991 242 ---QMQLESSPYSLLEGSMQLNLDLTVM 266 (332)
Q Consensus 242 ---~lmIGDs~~~DI~gA~~aG~~ti~~ 266 (332)
.++.-|.+ .-..+|+.+|+.+.++
T Consensus 197 ~~eiLfLTd~~-~Ea~aa~~aGl~a~l~ 223 (254)
T KOG2630|consen 197 PREILFLTDVP-REAAAARKAGLQAGLV 223 (254)
T ss_pred hhheEEeccCh-HHHHHHHhcccceeee
Confidence 58999995 5788999999999876
No 370
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.50 E-value=1.1e+02 Score=29.51 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=39.2
Q ss_pred cccHHHHhhhc-----CccEEEEecc-----ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 18 LNGLRHIAETR-----RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 18 ~~~~~~~~~~~-----~~~~vlfDlD-----GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
.+.+.++++.. ..+++.+|+| +...-..+-+|...++++.|+++|+++.+..+..
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~ 87 (339)
T cd06603 23 QEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPH 87 (339)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 44455555511 3578999976 3332234679999999999999999999888744
No 371
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=33.45 E-value=16 Score=34.93 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK 216 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~ 216 (332)
-+++.++++.|+++|+++ |+||+++..... .+..-++..+|+.
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~---~Le~lgL~~yFDv 193 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVH---SLKETKLEGYFDI 193 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHH---HHHHcCCCccccE
Confidence 378889999999999996 889876654322 2333445555554
No 372
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=33.41 E-value=72 Score=28.55 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=29.7
Q ss_pred ceeecCCcc--CcC-HHHHHHHHHHCCCeEEEEeCCCCC--hhHHHHHHHh
Q 019991 39 GVLHDGKKP--YPG-AISTLEMLATTGAKMVVISNSSRR--ASTTIDKLKS 84 (332)
Q Consensus 39 GvL~~g~~~--ipG-a~e~L~~L~~~G~~v~~vTN~s~~--~~~~~~~L~~ 84 (332)
++-+.|.+| .|+ ..++++.+++.|+++.+.||+... .+...+.++.
T Consensus 68 ~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 68 GVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 344444443 355 358999999999999999998532 3434444443
No 373
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.40 E-value=51 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=22.6
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCh
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRA 75 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~ 75 (332)
-+...++++.++++|.+++.+||++.++
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3457788889999999999999986543
No 374
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=33.13 E-value=1.2e+02 Score=25.15 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHHC--CCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 49 PGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 49 pGa~e~L~~L~~~--G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+...++++.+++. ++++.+.||.....++..+.|.+.|....
T Consensus 59 ~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i 102 (204)
T cd01335 59 PELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGV 102 (204)
T ss_pred HhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceE
Confidence 3788899999998 89999999987645566778887776544
No 375
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=33.12 E-value=4.9e+02 Score=25.75 Aligned_cols=40 Identities=13% Similarity=-0.112 Sum_probs=25.3
Q ss_pred cCCCCHHHHHHHHHHhCCeEEEeCChhhHHHHHHHcCCcEEE
Q 019991 224 MGKPDKLWATLFTMILRVQMQLESSPYSLLEGSMQLNLDLTV 265 (332)
Q Consensus 224 ~GKP~p~if~~Al~~lg~~lmIGDs~~~DI~gA~~aG~~ti~ 265 (332)
+--++..=++.++++.+..++||++.. -..|++.|+..+-
T Consensus 355 v~~~d~~el~~~i~~~~pdliig~~~~--~~~a~~~~ip~i~ 394 (428)
T cd01965 355 VFVGDLWDLESLAKEEPVDLLIGNSHG--RYLARDLGIPLVR 394 (428)
T ss_pred EECCCHHHHHHHhhccCCCEEEECchh--HHHHHhcCCCEEE
Confidence 334555555556666666788888843 5666777777764
No 376
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=33.02 E-value=85 Score=28.58 Aligned_cols=40 Identities=5% Similarity=-0.063 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEec
Q 019991 228 DKLWATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVMEK 268 (332)
Q Consensus 228 ~p~if~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~~ 268 (332)
.....+..++.+|+ +++|||+ ..|+..-+.+|...+.-|-
T Consensus 197 Kg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 197 KGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCCceEEecCc
Confidence 34567777788887 6899999 5899999999985554443
No 377
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=32.97 E-value=87 Score=34.69 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=41.7
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcccccc--ccccHH
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG--AITSGE 100 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~--Iits~~ 100 (332)
|-+--.++|-|+++++++.|+++|+++..+|.....+ ....-+++|+.... .. ++++.+
T Consensus 540 Gl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~T--A~aIa~~~Gi~~~~-~~~~vi~G~e 600 (917)
T COG0474 540 GLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVET--AIAIAKECGIEAEA-ESALVIDGAE 600 (917)
T ss_pred hhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHH--HHHHHHHcCCCCCC-CceeEeehHH
Confidence 3344467899999999999999999999999854322 23334678887663 32 555544
No 378
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=32.67 E-value=33 Score=29.48 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCc
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDY 195 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~ 195 (332)
|+++.++++.|+++|+++ |+||...
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 578899999999999996 8899874
No 379
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.46 E-value=54 Score=26.12 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=22.8
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
--+...++++.++++|.+++.+|+++.+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3466788899999999999999997643
No 380
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=31.65 E-value=30 Score=35.42 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=18.2
Q ss_pred CccEEEEeccceeecCCccCcCH
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGA 51 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa 51 (332)
..++++||+||||..+...+|-.
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFpyF 29 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFSYF 29 (498)
T ss_pred ccceEEEecccceecCCCccHHH
Confidence 46799999999999976655543
No 381
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=31.51 E-value=36 Score=29.29 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH--------hcCcccccCCCCHHHHHHHHHHhC
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK--------LGGEVRWMGKPDKLWATLFTMILR 240 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~--------~g~e~~~~GKP~p~if~~Al~~lg 240 (332)
.|+++.++++.|+++|.++ |+||.................+...++. ++.+.....||+|.+|+.+++++|
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~ 122 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYN 122 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcC
Confidence 4789999999999999985 8899765321100000000001112222 123333467999999999999998
Q ss_pred --C----eEEEeCCh-------hhHHHHHHHcCCcEEEEe
Q 019991 241 --V----QMQLESSP-------YSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 241 --~----~lmIGDs~-------~~DI~gA~~aG~~ti~~~ 267 (332)
+ .+||||+. .+||++|+++|++++|-+
T Consensus 123 ~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~~~ 162 (166)
T TIGR01664 123 SPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKYPE 162 (166)
T ss_pred CCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCChH
Confidence 5 69999995 479999999999998753
No 382
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=31.02 E-value=1.1e+02 Score=24.65 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=38.3
Q ss_pred cCcCHHHHHHHHHHC---CCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH
Q 019991 47 PYPGAISTLEMLATT---GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~---G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v 101 (332)
..|...+.+..+.+. ++++.+.||.+....+..+.|.+.|..... -.+-+..+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~-~~l~s~~~~ 114 (166)
T PF04055_consen 58 LHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIR-ISLESLDEE 114 (166)
T ss_dssp GSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEE-EEEBSSSHH
T ss_pred cchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEe-cccccCCHH
Confidence 357777888888876 999999999887546778889998855432 244444443
No 383
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=30.78 E-value=37 Score=28.23 Aligned_cols=26 Identities=15% Similarity=-0.027 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCc
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDY 195 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~ 195 (332)
.|+++.++++.|+++|.++ |+||.+.
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 3678899999999999985 8899764
No 384
>PRK06769 hypothetical protein; Validated
Probab=30.49 E-value=36 Score=29.28 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEecCCc
Q 019991 170 SLQDLEKILEICASKKIPM-VVANPDY 195 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~l-IaTN~D~ 195 (332)
.|+++.++++.|+++|+++ |+||.+.
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 3688999999998999985 8899763
No 385
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=30.45 E-value=1.5e+02 Score=28.20 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=42.8
Q ss_pred HHHHhhhcCccEEEEeccceeec------CCccCcCHHHHHHHHHHCCCeEEEEe---CCC--CChhHHHHHHHhCCCC
Q 019991 21 LRHIAETRRFKAWLLDQFGVLHD------GKKPYPGAISTLEMLATTGAKMVVIS---NSS--RRASTTIDKLKSLGFD 88 (332)
Q Consensus 21 ~~~~~~~~~~~~vlfDlDGvL~~------g~~~ipGa~e~L~~L~~~G~~v~~vT---N~s--~~~~~~~~~L~~lGl~ 88 (332)
+.++.+ ..+..|-+.+||.--. +...+.-+.+.|+.+++.|+++.+.| ++. ..-.++.+.+.++|+.
T Consensus 116 ~~~l~~-~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 116 LDKFEP-SPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred HHHHHh-CCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 555555 3467888999995211 12345567789999999999887633 322 1234566677788875
No 386
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=30.15 E-value=2.4e+02 Score=26.46 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=24.7
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCCccce
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPDYVTV 198 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D~~~~ 198 (332)
.-.+++..++++.|+++|.|+ +.||.....+
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~ 54 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSR 54 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 446789999999999999995 7899765443
No 387
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.10 E-value=1.1e+02 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=29.0
Q ss_pred ccceeecCCcc--CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHH
Q 019991 37 QFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (332)
Q Consensus 37 lDGvL~~g~~~--ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~ 83 (332)
.||++.....+ .+...++++.+++.|.+..++-|..++.+.+...++
T Consensus 102 adgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~ 150 (244)
T PRK13125 102 ADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK 150 (244)
T ss_pred CCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 55666554321 356677888888888888887776554444444333
No 388
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=30.08 E-value=28 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=18.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHh
Q 019991 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (332)
Q Consensus 52 ~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~ 84 (332)
.|+.+.|++.|++..-+|.++|. .+.++|.+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~--vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRK--LYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHH--HHHHHHHH
Confidence 35566777777777777755442 34555543
No 389
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=29.82 E-value=1.1e+02 Score=23.96 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=18.1
Q ss_pred hhhcCCccccCCCCCccEEEEe
Q 019991 133 SLEGLGLKVVENVEEADFILAH 154 (332)
Q Consensus 133 ~l~~~g~~~~~~~~~~~~vv~~ 154 (332)
.|...|++++++.++||.+++.
T Consensus 22 ~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 22 ILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred HHHhcCCeeecccccCCEEEEE
Confidence 5777888888877899999994
No 390
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=29.79 E-value=46 Score=32.64 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 50 GAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 50 Ga~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
....+++.|++.|+++.++||++.+
T Consensus 244 ql~~fl~kL~~~GKklFLiTNSPys 268 (510)
T KOG2470|consen 244 QLLAFLRKLKDHGKKLFLITNSPYS 268 (510)
T ss_pred HHHHHHHHHHHhcCcEEEEeCCchh
Confidence 4556899999999999999998753
No 391
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=29.05 E-value=1.2e+02 Score=30.11 Aligned_cols=107 Identities=7% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCc-EEEecCCccceeccceecCCChhHHHHHHh----cC-
Q 019991 146 EEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL----GG- 219 (332)
Q Consensus 146 ~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~-lIaTN~D~~~~~~~~~~l~~G~i~~~~e~~----g~- 219 (332)
..+..|...+..+|+ ..|+....=+..+.+.|+. +|.||........ +..-.+.+-++++ +.
T Consensus 89 t~sg~vf~~~~~dw~--------~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~----~~~~~f~~Ki~~i~anl~vP 156 (422)
T KOG2134|consen 89 TKSGKVFPKGSMDWR--------ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGK----LELEEFKKKIKAIVANLGVP 156 (422)
T ss_pred cCCcceeeccCccce--------eeccccchhhhhhccCCeEEEEEecccccccCc----chHHHHHHHHHHHHHhcCCc
Confidence 345667777777775 3444444555566778987 4889976643222 1111233333331 11
Q ss_pred -----c--ccccCCCCHHHHHHHHHHhCC--------eEEEeC--------------ChhhHHHHHHHcCCcEE
Q 019991 220 -----E--VRWMGKPDKLWATLFTMILRV--------QMQLES--------------SPYSLLEGSMQLNLDLT 264 (332)
Q Consensus 220 -----e--~~~~GKP~p~if~~Al~~lg~--------~lmIGD--------------s~~~DI~gA~~aG~~ti 264 (332)
+ .-.+.||..-|++...+..+- ..++|| --..|+..|.++|++..
T Consensus 157 i~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 157 IQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred eEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 1 124569999999999987753 134444 23579999999999865
No 392
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=28.67 E-value=35 Score=31.35 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEecCCcc
Q 019991 170 SLQDLEKILEICASKKIP-MVVANPDYV 196 (332)
Q Consensus 170 ~y~~l~~~l~~l~~~g~~-lIaTN~D~~ 196 (332)
..++..++++.++++|.. +++|+.+..
T Consensus 121 aip~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 457888899998899997 578987654
No 393
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=28.59 E-value=2.5e+02 Score=22.54 Aligned_cols=91 Identities=7% Similarity=-0.024 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHH---hc-CcccccCCCCHHHHHHHHHHhCC-eEEEeCC
Q 019991 175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK---LG-GEVRWMGKPDKLWATLFTMILRV-QMQLESS 248 (332)
Q Consensus 175 ~~~l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~---~g-~e~~~~GKP~p~if~~Al~~lg~-~lmIGDs 248 (332)
+++++.+++.+-++ ++-++|...+.... .+- -+..+..+. .+ .+.....-|.....+. ++.+++ .+++||+
T Consensus 15 ~~~l~~a~~~~~~~iv~v~~d~~~~~~~~-~~i-~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~-l~~~~~~~vv~G~D 91 (125)
T TIGR01518 15 INLLERAKQLGDYLIVALSTDEFNLQKQK-KAY-HSYEHRKLILETIRYVDLVIPEKSWEQKKQD-IIDFNIDVFVMGDD 91 (125)
T ss_pred HHHHHHHHHcCCEEEEEEechHHHhhcCC-CCC-CCHHHHHHHHHcCCCccEEecCCCccchHHH-HHHcCCCEEEECCC
Confidence 44555555545444 44366654332211 111 123333333 23 3444444444444444 477887 6899999
Q ss_pred hhhHHHHHHH-cCCcEEEEec
Q 019991 249 PYSLLEGSMQ-LNLDLTVMEK 268 (332)
Q Consensus 249 ~~~DI~gA~~-aG~~ti~~~~ 268 (332)
...|...-++ .|+..+.+++
T Consensus 92 ~~g~~~~l~~~~~~~v~~v~~ 112 (125)
T TIGR01518 92 WEGKFDFLKDECPLKVVYLPR 112 (125)
T ss_pred ccchHHHHhhccCcEEEEeCC
Confidence 7555543333 4555555443
No 394
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=28.59 E-value=1.1e+02 Score=33.64 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=41.0
Q ss_pred cEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccc
Q 019991 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL 91 (332)
Q Consensus 31 ~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~ 91 (332)
+..+.-+=| --++|-|++.++++.+++.|+++..+|.....++ ...-++.|+....
T Consensus 572 ~LtFvGlVG---i~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA--~AI~r~iGi~~~~ 627 (972)
T KOG0202|consen 572 DLTFVGLVG---ILDPPRPEVADAIELCRQAGIRVIMITGDNKETA--EAIAREIGIFSED 627 (972)
T ss_pred ceEEEEEee---ccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHH--HHHHHHhCCCcCC
Confidence 455554444 3468999999999999999999999998665432 2334678887653
No 395
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=28.43 E-value=1.8e+02 Score=25.31 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=52.9
Q ss_pred HHHHHhCCCcE-EEecCCccceeccceecCCChhHHHHHHhcCcccccCCC-CHHHHHHHHHHhCC----eEEEeCChhh
Q 019991 178 LEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKP-DKLWATLFTMILRV----QMQLESSPYS 251 (332)
Q Consensus 178 l~~l~~~g~~l-IaTN~D~~~~~~~~~~l~~G~i~~~~e~~g~e~~~~GKP-~p~if~~Al~~lg~----~lmIGDs~~~ 251 (332)
++.+...|+++ |.|..+... +....+..|-+..+.|+- ....|+..++++++ +.+|||++ .
T Consensus 44 ik~l~~~Gi~vAIITGr~s~i------------ve~Ra~~LGI~~~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~-~ 110 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPI------------VEKRAKDLGIKHLYQGISDKLAAFEELLKKLNLDPEEVAYVGDDL-V 110 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHH------------HHHHHHHcCCceeeechHhHHHHHHHHHHHhCCCHHHhhhhcCcc-c
Confidence 44556778875 777654432 223334445565666643 45689999999998 58999996 7
Q ss_pred HHHHHHHcCCcEEEEe
Q 019991 252 LLEGSMQLNLDLTVME 267 (332)
Q Consensus 252 DI~gA~~aG~~ti~~~ 267 (332)
|+-.=.+.|+...--+
T Consensus 111 Dlpvm~~vGls~a~~d 126 (170)
T COG1778 111 DLPVMEKVGLSVAVAD 126 (170)
T ss_pred cHHHHHHcCCcccccc
Confidence 9999999999876544
No 396
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=28.23 E-value=37 Score=24.65 Aligned_cols=24 Identities=4% Similarity=-0.151 Sum_probs=13.9
Q ss_pred HHHHHHhCCeEEEeCChhhHHHHHH
Q 019991 233 TLFTMILRVQMQLESSPYSLLEGSM 257 (332)
Q Consensus 233 ~~Al~~lg~~lmIGDs~~~DI~gA~ 257 (332)
+..++++|+.+++||+. .||+...
T Consensus 8 qQLLK~fG~~IY~gdr~-~DielM~ 31 (62)
T PF06014_consen 8 QQLLKKFGIIIYVGDRL-WDIELME 31 (62)
T ss_dssp HHHHHTTS-----S-HH-HHHHHHH
T ss_pred HHHHHHCCEEEEeCChH-HHHHHHH
Confidence 56789999999999995 7998653
No 397
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=27.73 E-value=94 Score=21.50 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=33.9
Q ss_pred ccHHHHhhhcCccEEEEeccceeecCCccCcCHH---HHHHHHHHCCCeEEEEeC
Q 019991 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAI---STLEMLATTGAKMVVISN 70 (332)
Q Consensus 19 ~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~---e~L~~L~~~G~~v~~vTN 70 (332)
....|++- .-..+++++||+-+++........ +....+...|.++.++.+
T Consensus 28 ~~~pDf~~--~~~~~~ie~kg~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 80 (80)
T cd01037 28 SYIPDFVC--PSAKLVIELKGTFHDGLLRKLRTSEKQERIAFLEADGKKVLRFWN 80 (80)
T ss_pred CCccCEEc--cCCCEEEEEECccccCchhhhhhcchHHHHHHHHHCCCEEEEEeC
Confidence 34445554 334688899999998766544443 567788888888877653
No 398
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=27.68 E-value=1.1e+02 Score=24.53 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=20.3
Q ss_pred cCHHHHHHHHHHCCC-eEEEEeCCCCCh
Q 019991 49 PGAISTLEMLATTGA-KMVVISNSSRRA 75 (332)
Q Consensus 49 pGa~e~L~~L~~~G~-~v~~vTN~s~~~ 75 (332)
+.+.++++.+++.+. +..+.||.....
T Consensus 70 ~~l~~i~~~~k~~~~~~~~~~tng~~~~ 97 (139)
T PF13353_consen 70 DELLEILKYIKEKFPKKIIILTNGYTLD 97 (139)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEETT--HH
T ss_pred hHHHHHHHHHHHhCCCCeEEEECCCchh
Confidence 677889999999998 899999987543
No 399
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=27.66 E-value=1.4e+02 Score=23.62 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=19.5
Q ss_pred CCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 61 TGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 61 ~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
...++++.-+++..+......|+++|+..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~ 91 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTN 91 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCe
Confidence 56777777766544455567788888764
No 400
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=27.48 E-value=1e+02 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=24.6
Q ss_pred HHHHHHHhCC----eEEEeCChhhHHHHHHHcCCcEEEEe
Q 019991 232 ATLFTMILRV----QMQLESSPYSLLEGSMQLNLDLTVME 267 (332)
Q Consensus 232 f~~Al~~lg~----~lmIGDs~~~DI~gA~~aG~~ti~~~ 267 (332)
.+..++.+|+ .++|||+ ..|+..-+.+|.. +.+.
T Consensus 191 i~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~~~-~am~ 228 (254)
T PF08282_consen 191 IKYLLEYLGISPEDIIAFGDS-ENDIEMLELAGYS-VAMG 228 (254)
T ss_dssp HHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSSEE-EEET
T ss_pred HHHHhhhcccccceeEEeecc-cccHhHHhhcCeE-EEEc
Confidence 3444555565 5899999 5899999999876 4443
No 401
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=27.41 E-value=39 Score=29.72 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=21.5
Q ss_pred EEEEeccceeecCCccCcCHHHHHHHH
Q 019991 32 AWLLDQFGVLHDGKKPYPGAISTLEML 58 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ipGa~e~L~~L 58 (332)
-+.+|+|||+.+.....|--.+.++.-
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~ks 34 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKS 34 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhh
Confidence 478999999999998888766666543
No 402
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=27.19 E-value=1e+02 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 61 ~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.+.++++.-+++..+......|++.|+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCce
Confidence 4567888777665555667788999987
No 403
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=27.13 E-value=1.5e+02 Score=27.68 Aligned_cols=35 Identities=6% Similarity=0.105 Sum_probs=21.2
Q ss_pred eccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCC
Q 019991 36 DQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (332)
Q Consensus 36 DlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~ 71 (332)
.+||++....+ ++.+.++++.+++.|+..+++-+-
T Consensus 119 GvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 119 GVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred CCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECC
Confidence 35666665543 356666667777777666655543
No 404
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=27.13 E-value=82 Score=32.65 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
.+.+++|+.+|-+-+..-..-..++.+.++++|+++.++--+ +++.+.|++.|+...
T Consensus 494 ~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~----~~v~~~l~~~gl~~~ 550 (563)
T TIGR00815 494 LQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPN----KAVRSTLKRGGLVEL 550 (563)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCC----hHHHHHHHHCCchhh
Confidence 379999999998888888888888999999999998887642 346677888888644
No 405
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=27.06 E-value=2.1e+02 Score=26.89 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.5
Q ss_pred ccccHHHHhhhc-----CccEEEEecc-----c--eeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 17 TLNGLRHIAETR-----RFKAWLLDQF-----G--VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~vlfDlD-----G--vL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
..+.+.++++.. ..+++.+|.| + ...-..+-+|+..++++.|++.|+++.+..+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~ 89 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPY 89 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCC
Confidence 344555555522 2578889973 2 333345789999999999999999999888743
No 406
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=26.80 E-value=5.3e+02 Score=25.90 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=37.4
Q ss_pred ccHHHHhhhc-CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 19 NGLRHIAETR-RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 19 ~~~~~~~~~~-~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+.++.+.+.. .++.|.| .|++.... .+-+.++++.+++.|+++..-+... ..++..+.|++.|....
T Consensus 234 ~Ei~~~~~~~~~~~~i~f-~Dd~f~~~---~~~~~~l~~~l~~~~i~~~~~~~~~-~~~e~l~~l~~aG~~~v 301 (472)
T TIGR03471 234 EEVKYALENFPEVREFFF-DDDTFTDD---KPRAEEIARKLGPLGVTWSCNARAN-VDYETLKVMKENGLRLL 301 (472)
T ss_pred HHHHHHHHhcCCCcEEEE-eCCCCCCC---HHHHHHHHHHHhhcCceEEEEecCC-CCHHHHHHHHHcCCCEE
Confidence 3444555410 2355666 35554322 2346678888888777665444322 24566777888887643
No 407
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=26.78 E-value=1.2e+02 Score=27.02 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=37.9
Q ss_pred eecCCccCcCHHHHHHHHHHC-CCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 41 LHDGKKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 41 L~~g~~~ipGa~e~L~~L~~~-G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+--|..+++.+..++++|.+. |.++++|+..+...+.+...-+++|++..
T Consensus 2 vKiGGsl~~~~~~~~~~l~~~~~~~v~iV~GGG~~A~~~r~~~~~~g~~~~ 52 (203)
T cd04240 2 VKIGGSLIREAVRLLRWLKTLSGGGVVIVPGGGPFADVVRRYQERKGLSDA 52 (203)
T ss_pred EEEcccccccHHHHHHHHHhccCCCEEEEcCCcHHHHHHHHHHHHcCCChH
Confidence 444666777788899999765 89999999988766666655578888765
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=26.74 E-value=92 Score=31.11 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=44.4
Q ss_pred cccccHHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
.....++++++ +|. .|.++|++..-..--....+++..+.+.++|+.++||+-+-
T Consensus 323 ~K~~dlkei~~--~f~--~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~V 377 (407)
T COG1419 323 TKYEDLKEIIK--QFS--LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRV 377 (407)
T ss_pred cchHHHHHHHH--Hhc--cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCC
Confidence 35567888888 665 57889999887766677788999999999999999998653
No 409
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=26.68 E-value=91 Score=35.05 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=37.5
Q ss_pred ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 39 GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
|.+--.+++-||+.++|+.|+++|+++.++|.....+ ....-++.|+-.
T Consensus 624 G~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~T--A~~IA~~~~ii~ 672 (1057)
T TIGR01652 624 GATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVET--AINIGYSCRLLS 672 (1057)
T ss_pred EEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHH--HHHHHHHhCCCC
Confidence 7777788999999999999999999999999854322 223334567654
No 410
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.51 E-value=82 Score=25.24 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=23.1
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCh
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRA 75 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~ 75 (332)
-+...++++.++++|.+++.+||+..++
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 4667788899999999999999976543
No 411
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.34 E-value=5.1e+02 Score=23.74 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccc--cccccccHHHHHHHHhhcC
Q 019991 51 AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL--FAGAITSGELTHQYLLRRD 110 (332)
Q Consensus 51 a~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~--f~~Iits~~v~~~~L~~~~ 110 (332)
-.|.-+++++.+ ++-++|- +-++.+.|+.+|..-.. ---+..-.+...+||..++
T Consensus 87 d~ei~~~ie~~~-~v~vvTt----s~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~G 143 (238)
T COG3473 87 DKEIAQRIEEAK-GVPVVTT----STAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANG 143 (238)
T ss_pred hHHHHHHHHhcc-CCceeec----hHHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCC
Confidence 456777777776 7777774 23456778888775321 0012222344566777664
No 412
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=26.22 E-value=1.4e+02 Score=28.61 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHH--HHHHHHhhcCChh-------hhhcCCe
Q 019991 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE--LTHQYLLRRDDAW-------FAALGRS 120 (332)
Q Consensus 50 Ga~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~--v~~~~L~~~~~~~-------~~~~G~~ 120 (332)
...+.++.+-+.+.|+.++|++-..++.+.+..++.+++... ....++.- ....||.+...+. +.+-|..
T Consensus 70 ~~~~~~~~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~-t~~~~~~~~~~l~~~L~~~la~~~~~hg~~v~i~g~g 148 (304)
T TIGR00679 70 EQKQIIHNLLTLNPPAIILSKSFTDPTVLLQVNETYQVPILK-TDLFSTELSFRLETYLNEQFAPTAAIHGVLVEVYGVG 148 (304)
T ss_pred HHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEE-eCCcHHHHHHHHHHHHHHhhccceeeeeEEEEECCEE
Confidence 445688888889999999999887777788888899998764 44444332 2334555544321 1133556
Q ss_pred EEEeecCcccch----hhhcCCcccc
Q 019991 121 CIHMTWSDRGAI----SLEGLGLKVV 142 (332)
Q Consensus 121 v~~~g~~~~~~~----~l~~~g~~~~ 142 (332)
+++.|.+..++. ++-+.|..+.
T Consensus 149 vli~G~sg~GKS~lal~Li~rg~~lv 174 (304)
T TIGR00679 149 VLITGKSGVGKSETALELINRGHRLV 174 (304)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCcee
Confidence 667776555544 3445566554
No 413
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=26.18 E-value=1.7e+02 Score=29.84 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=50.8
Q ss_pred cccCCCCCccccccccHHH------HhhhcCccEEEEeccceeecCC--ccCcCHHHHHHHHHHCCCeEEEEeCCCCC--
Q 019991 5 CSVQSNDPHLFQTLNGLRH------IAETRRFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRR-- 74 (332)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vlfDlDGvL~~g~--~~ipGa~e~L~~L~~~G~~v~~vTN~s~~-- 74 (332)
|.|-|.|..-+.+-+..++ +-|+..+ ++++=-||.+.+-. ...+--...++.|++.|+|++++-|+..+
T Consensus 116 RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstI-givVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 116 RMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTI-GVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred ccccCCcccccCchhhhhhhhHHHHHHhcCcE-EEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 6788889888866554333 3332122 45554577665433 23333346999999999999999997652
Q ss_pred --hhHHHHHH-HhCCCC
Q 019991 75 --ASTTIDKL-KSLGFD 88 (332)
Q Consensus 75 --~~~~~~~L-~~lGl~ 88 (332)
+.++.+.| ++++.+
T Consensus 195 ~et~~l~~~l~eky~vp 211 (492)
T TIGR02836 195 PETEALRQELEEKYDVP 211 (492)
T ss_pred chhHHHHHHHHHHhCCc
Confidence 22334455 345655
No 414
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=25.91 E-value=23 Score=31.77 Aligned_cols=19 Identities=42% Similarity=1.041 Sum_probs=15.3
Q ss_pred HHHHhhHHHhhhhhhccccc
Q 019991 308 LTEFFCHQMIVSTFMCCETK 327 (332)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~ 327 (332)
-.||.|. .+-|-|.||||.
T Consensus 139 rsefics-fvgsrflccctq 157 (303)
T PF07184_consen 139 RSEFICS-FVGSRFLCCCTQ 157 (303)
T ss_pred hhhhhhh-hccceeEEEech
Confidence 3688885 678999999985
No 415
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.71 E-value=2.9e+02 Score=20.63 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=39.5
Q ss_pred ccccHHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHC--CCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 17 ~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~--G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
..+.+.+.+....++.+++|++=. --...++++.|++. +.+++++|+.... ......-+.|....
T Consensus 31 ~~~~~~~~~~~~~~d~iiid~~~~-------~~~~~~~~~~i~~~~~~~~ii~~t~~~~~--~~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIIIDLELP-------DGDGLELLEQIRQINPSIPIIVVTDEDDS--DEVQEALRAGADDY 97 (112)
T ss_dssp SHHHHHHHHHHSTESEEEEESSSS-------SSBHHHHHHHHHHHTTTSEEEEEESSTSH--HHHHHHHHTTESEE
T ss_pred CHHHHHHHhcccCceEEEEEeeec-------cccccccccccccccccccEEEecCCCCH--HHHHHHHHCCCCEE
Confidence 334555556645788999994321 12445788888874 4899999975542 22333446776654
No 416
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=25.59 E-value=47 Score=26.72 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=22.1
Q ss_pred ccCHHHHHHHHHHHHhCCCcE-EEecCC
Q 019991 168 PMSLQDLEKILEICASKKIPM-VVANPD 194 (332)
Q Consensus 168 ~~~y~~l~~~l~~l~~~g~~l-IaTN~D 194 (332)
...|+++.++++.|+++|+++ ++||..
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 445789999999998899885 788876
No 417
>PRK10658 putative alpha-glucosidase; Provisional
Probab=25.42 E-value=1.8e+02 Score=30.99 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.0
Q ss_pred cHHHHhhhc-----CccEEEEecc-------ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 20 GLRHIAETR-----RFKAWLLDQF-------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 20 ~~~~~~~~~-----~~~~vlfDlD-------GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
.+.++++.+ ..+++.+|++ ++..=..+-+|.-.++++.|+++|+++++..|..
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~ 348 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPY 348 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCC
Confidence 455555521 3578999985 2333344679999999999999999999998864
No 418
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=25.39 E-value=19 Score=26.45 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=24.6
Q ss_pred EEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 34 lfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
+||-||.+.....- ...+.+.|++....+.+...|.++|+...
T Consensus 7 lfd~DG~v~~~~~~--------------~~~i~~~~~s~~ll~~v~~lL~~lGi~~~ 49 (77)
T PF14528_consen 7 LFDGDGSVSKNRRK--------------SVRISISSKSKELLEDVQKLLLRLGIKAS 49 (77)
T ss_dssp HHHHHEEEECCSEC--------------EEEEEEEES-HHHHHHHHHHHHHTT--EE
T ss_pred HhcCCccEECCCCc--------------EEEEEEEECCHHHHHHHHHHHHHCCCeeE
Confidence 46788887755321 22344555444455677788889999864
No 419
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.38 E-value=3.2e+02 Score=28.84 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=38.3
Q ss_pred EEEEeccceeecCCccCc-CHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 32 AWLLDQFGVLHDGKKPYP-GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 32 ~vlfDlDGvL~~g~~~ip-Ga~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
.-++|+||-+.+-..--. .-.+.++++.+.|.|+++.|.-+-.++.+.+.-+.+|-.
T Consensus 257 iAvldldGevl~~~S~r~~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ 314 (652)
T COG2433 257 IAVLDLDGEVLDLESRRGIDRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFNAV 314 (652)
T ss_pred EEEEecCCcEEeeeccccCCHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCc
Confidence 468999998887543322 335788999999999999998544444433333445554
No 420
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.36 E-value=88 Score=27.12 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=32.1
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCC--C-hhHHHHHHHhCCCCcc
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSR--R-ASTTIDKLKSLGFDPS 90 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~--~-~~~~~~~L~~lGl~~~ 90 (332)
..|+...++.|+ .|+|.++++|.+- + ..+++++|.+.|.--+
T Consensus 87 HAGaGS~letL~-l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~ 131 (170)
T KOG3349|consen 87 HAGAGSCLETLR-LGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYY 131 (170)
T ss_pred cCCcchHHHHHH-cCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEE
Confidence 467788888886 6899999999773 2 3477889988887643
No 421
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=25.35 E-value=1e+02 Score=26.11 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=26.9
Q ss_pred ccceeecCCccCc-----CHHHHHHHHHHC-CCeEEEEeCCCC
Q 019991 37 QFGVLHDGKKPYP-----GAISTLEMLATT-GAKMVVISNSSR 73 (332)
Q Consensus 37 lDGvL~~g~~~ip-----Ga~e~L~~L~~~-G~~v~~vTN~s~ 73 (332)
..||...|.+|.- ...++++.+++. +.+.+++||+..
T Consensus 64 ~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~ 106 (154)
T TIGR02491 64 IDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYT 106 (154)
T ss_pred cCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCcc
Confidence 4788888887763 456778888865 677777787654
No 422
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=24.81 E-value=1.1e+02 Score=27.82 Aligned_cols=38 Identities=16% Similarity=-0.020 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC------eEEEeCChhhHHHHHHHcCCcEEEEecc
Q 019991 231 WATLFTMILRV------QMQLESSPYSLLEGSMQLNLDLTVMEKL 269 (332)
Q Consensus 231 if~~Al~~lg~------~lmIGDs~~~DI~gA~~aG~~ti~~~~~ 269 (332)
..+.+++.+|+ .++|||+ .+|+...+.+|...+.-|..
T Consensus 180 ai~~l~~~~~i~~~~~~~~a~GD~-~ND~~Ml~~ag~~vam~Na~ 223 (256)
T TIGR01486 180 AANALKQFYNQPGGAIKVVGLGDS-PNDLPLLEVVDLAVVVPGPN 223 (256)
T ss_pred HHHHHHHHHhhcCCCceEEEEcCC-HhhHHHHHHCCEEEEeCCCC
Confidence 35555566553 5899999 58999999999877765553
No 423
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.80 E-value=2.6e+02 Score=26.56 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=38.0
Q ss_pred ccEEEEeccce--------eec-CCccCcCHHHHHHHHHHCCCeEEEEeCCCCC-hhHHHHHHHhCCC
Q 019991 30 FKAWLLDQFGV--------LHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGF 87 (332)
Q Consensus 30 ~~~vlfDlDGv--------L~~-g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~-~~~~~~~L~~lGl 87 (332)
++++.+|.+=+ -+. ..+-+|+..++++.|+++|+++.+..+.... ....-+.+.+.|+
T Consensus 45 ~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~ 112 (317)
T cd06599 45 CDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGA 112 (317)
T ss_pred eeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCc
Confidence 58888884321 111 2367999999999999999999987775531 1122334455554
No 424
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.77 E-value=1.7e+02 Score=26.75 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=17.5
Q ss_pred cceeecCCccCcCHHHHHHHHHHCCCeEEEEeCC
Q 019991 38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (332)
Q Consensus 38 DGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~ 71 (332)
||++....+ ++...++++.+++.|.+.+++-|-
T Consensus 106 ~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 106 DGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred cEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCC
Confidence 444443332 345556666666666665554443
No 425
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.61 E-value=5.6e+02 Score=26.03 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHCC-CeEEEEeCCC--C--ChhHHHHHHHhCCCCc
Q 019991 50 GAISTLEMLATTG-AKMVVISNSS--R--RASTTIDKLKSLGFDP 89 (332)
Q Consensus 50 Ga~e~L~~L~~~G-~~v~~vTN~s--~--~~~~~~~~L~~lGl~~ 89 (332)
.+.++++.|.+.| .++.+..+.. . ..+++.+.|++.|+..
T Consensus 256 ~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 256 KFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVH 300 (497)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcE
Confidence 3567778887776 5554433321 1 1345667777777754
No 426
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.60 E-value=1.2e+02 Score=26.01 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=22.7
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCh
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRA 75 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~ 75 (332)
-+.+.++++.++++|.+++.+|+++.++
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 4567788888999999999999977543
No 427
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=24.31 E-value=1.7e+02 Score=32.70 Aligned_cols=18 Identities=6% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHhCCCcEEEecCCccce
Q 019991 181 CASKKIPMVVANPDYVTV 198 (332)
Q Consensus 181 l~~~g~~lIaTN~D~~~~ 198 (332)
|.++|++++.|+|...-.
T Consensus 1013 L~r~~~kilGTsP~~ID~ 1030 (1435)
T KOG0370|consen 1013 LHRNGVKILGTSPEMIDS 1030 (1435)
T ss_pred hHhcCCeEecCChHhhhh
Confidence 356677777777766543
No 428
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=24.07 E-value=1.8e+02 Score=27.99 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHH--HHHHHhhcCChh-------hhhcCCe
Q 019991 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL--THQYLLRRDDAW-------FAALGRS 120 (332)
Q Consensus 50 Ga~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v--~~~~L~~~~~~~-------~~~~G~~ 120 (332)
...+.++.+-+.+.|+.++|++-..++++.+..++.+++... ....|+.-. ...||.++..+. +.+.|..
T Consensus 70 ~r~~~~~~l~~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll~-t~~~t~~~i~~l~~~L~~~la~~~~iHg~~v~V~G~G 148 (308)
T PRK05428 70 ERKERLKKLFSLEPPCIIVTRGLEPPPELLEAAKEAGIPLLR-TPLSTTRLISKLTNYLDRKLAPRTSVHGVLVDIYGIG 148 (308)
T ss_pred HHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHcCCcEEE-eCCcHHHHHHHHHHHHHHHhhhcceeeeEEEEECCEE
Confidence 345678888889999999999887777788888899998763 333333322 223555543321 1144666
Q ss_pred EEEeecCcccch----hhhcCCcccc
Q 019991 121 CIHMTWSDRGAI----SLEGLGLKVV 142 (332)
Q Consensus 121 v~~~g~~~~~~~----~l~~~g~~~~ 142 (332)
+++.|.+..++. +|-+.|..++
T Consensus 149 vLi~G~SG~GKSelALeLi~rGh~LV 174 (308)
T PRK05428 149 VLITGESGIGKSETALELIKRGHRLV 174 (308)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCceE
Confidence 777776655553 3445565554
No 429
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=23.81 E-value=1.3e+02 Score=28.69 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=33.6
Q ss_pred ccEEEEecc-----ceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCC
Q 019991 30 FKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 30 ~~~vlfDlD-----GvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s 72 (332)
.+.+.+|+| +...=..+-+|+..++++.|+++|+++.+..+..
T Consensus 40 ~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~ 87 (317)
T cd06600 40 YDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPG 87 (317)
T ss_pred cceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecc
Confidence 578999965 4443344679999999999999999998877643
No 430
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=23.68 E-value=1.1e+02 Score=28.19 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=29.8
Q ss_pred ccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.++|++..|. ..-.+++..++++.|++.+++++++||.++
T Consensus 108 ~~~Vv~g~~~----~~~~y~~l~~a~~~L~~~~~~~~iatn~~~ 147 (257)
T TIGR01458 108 PNCVVMGLAP----EHFSYQILNQAFRLLLDGAKPLLIAIGKGR 147 (257)
T ss_pred CCEEEEeccc----CccCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 4555555533 123478999999999999999999999765
No 431
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=23.52 E-value=56 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHhhhc-CccEEEEeccceeecCCccCcCHHHHHHHHHHC--CCeEEEEeCCC
Q 019991 21 LRHIAETR-RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNSS 72 (332)
Q Consensus 21 ~~~~~~~~-~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~--G~~v~~vTN~s 72 (332)
...+++.. ++.++++|+| ........++++.+++. ++|+.++++..
T Consensus 29 ~~~~i~~~~~i~avvi~~d------~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 29 ALAIIESFTDIAAVVISWD------GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHCTTTEEEEEEECH------HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHhCCCeeEEEEEcc------cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 33444421 5789999999 33344566788888865 58999999844
No 432
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=23.39 E-value=2.3e+02 Score=29.33 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred hcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHH
Q 019991 27 TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (332)
Q Consensus 27 ~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L 106 (332)
....+.+++.+.- .+++.++.+.|.+.|+.+ +.|.+ ..+.|++.|++...-..+....+....-+
T Consensus 1 ~~~~~~aLISVsD--------K~~iv~lAk~L~~lGfeI-~AT~G------Tak~L~e~GI~v~~V~k~TgfpEil~GRV 65 (513)
T PRK00881 1 RRMIKRALISVSD--------KTGIVEFAKALVELGVEI-LSTGG------TAKLLAEAGIPVTEVSDVTGFPEILDGRV 65 (513)
T ss_pred CCCcCEEEEEEeC--------cccHHHHHHHHHHCCCEE-EEcch------HHHHHHHCCCeeEEeecccCCchhcCCcc
Q ss_pred hhcCChhhh-hcCCeEEEeecCcccchhhhcCCccccCCCCCccEEEE
Q 019991 107 LRRDDAWFA-ALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILA 153 (332)
Q Consensus 107 ~~~~~~~~~-~~G~~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~ 153 (332)
+..++.-+. +++++ .......++++.|+ ...|.|++
T Consensus 66 KTLHP~IhgGiLa~r-----~~~~h~~~l~~~~i------~~IDlVvv 102 (513)
T PRK00881 66 KTLHPKIHGGILARR-----DNPEHVAALEEHGI------EPIDLVVV 102 (513)
T ss_pred ccCCchhhhhhccCC-----CCHHHHHHHHHcCC------CceeEEEE
No 433
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.12 E-value=80 Score=31.09 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=39.9
Q ss_pred cHHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeC-CC
Q 019991 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SS 72 (332)
Q Consensus 20 ~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN-~s 72 (332)
.-.+.++ ..|+++||+.-|=.+--+.+--...++++..+.|++++|+-. |+
T Consensus 71 Pt~~mL~--~vDvlvfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDRPNP 122 (365)
T PF07075_consen 71 PTPEMLK--GVDVLVFDIQDVGVRFYTYISTLYYVMEAAAENGKPVVVLDRPNP 122 (365)
T ss_pred CCHHHHh--CCCEEEEeCccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeCCCC
Confidence 3466677 799999999987555555555566789999999999999987 55
No 434
>PRK06740 histidinol-phosphatase; Validated
Probab=22.69 E-value=4.8e+02 Score=25.10 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHhCCeEEEeCChh----------hHHHHHHHcCCcEEEE-ecch
Q 019991 227 PDKLWATLFTMILRVQMQLESSPY----------SLLEGSMQLNLDLTVM-EKLQ 270 (332)
Q Consensus 227 P~p~if~~Al~~lg~~lmIGDs~~----------~DI~gA~~aG~~ti~~-~~~~ 270 (332)
|++.+++.+.+ +|+.+.+|++-+ .-++.++++|++.+.+ .+.+
T Consensus 272 P~~~il~~~~e-~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G~~~i~~f~~~~ 325 (331)
T PRK06740 272 PSPLFLQVLAK-HEVPITLSSDAHYPNDLGKYVEENVKTLRNHGVTSLATFTKRV 325 (331)
T ss_pred cCHHHHHHHHH-CCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcCCcEEEEEeCCc
Confidence 77788885544 589899998831 1133556899998865 4433
No 435
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=22.68 E-value=2.4e+02 Score=25.28 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=34.3
Q ss_pred ccEEEEeccceeecCC--------ccCcCHHH---------------------------HHHHHHHCCCeEEEEeCCCC-
Q 019991 30 FKAWLLDQFGVLHDGK--------KPYPGAIS---------------------------TLEMLATTGAKMVVISNSSR- 73 (332)
Q Consensus 30 ~~~vlfDlDGvL~~g~--------~~ipGa~e---------------------------~L~~L~~~G~~v~~vTN~s~- 73 (332)
.=+|-||+|.|+.-+. ..-||..+ +|+.-.++|=.++|+|..+.
T Consensus 63 Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~g 142 (237)
T COG3700 63 PIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPG 142 (237)
T ss_pred CeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4589999999986544 23345443 45555567888888888653
Q ss_pred ChhHHHHHHH
Q 019991 74 RASTTIDKLK 83 (332)
Q Consensus 74 ~~~~~~~~L~ 83 (332)
..+.+.+.|+
T Consensus 143 k~d~vsk~La 152 (237)
T COG3700 143 KTDTVSKTLA 152 (237)
T ss_pred cccccchhHH
Confidence 3444555553
No 436
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=22.65 E-value=1.4e+02 Score=22.12 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=22.5
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEE-EEeCCC
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMV-VISNSS 72 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~-~vTN~s 72 (332)
.++.+++|+.- ...+.|+.|+++|++++ .++-++
T Consensus 26 ~~~v~~iD~~~----------~~~~~I~~L~~~G~~vicY~s~Gs 60 (74)
T PF03537_consen 26 DVDVVVIDLFD----------FSKEEIARLKAQGKKVICYFSIGS 60 (74)
T ss_dssp S-SEEEE-SBS------------HHHHHHHHHTT-EEEEEEESSE
T ss_pred CCCEEEECCcc----------CCHHHHHHHHHCCCEEEEEEeCce
Confidence 78999999876 45788999999997755 555443
No 437
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.52 E-value=3.1e+02 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcEE--EecCCcccee
Q 019991 172 QDLEKILEICASKKIPMV--VANPDYVTVE 199 (332)
Q Consensus 172 ~~l~~~l~~l~~~g~~lI--aTN~D~~~~~ 199 (332)
..+..++..+++.|.++| .+||+.....
T Consensus 100 ~el~~~~~~aK~~g~~liaiT~~~~SsLak 129 (202)
T COG0794 100 KELLNLAPKAKRLGAKLIAITSNPDSSLAK 129 (202)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCChHHH
Confidence 567777888888999974 5788876543
No 438
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=22.45 E-value=1.1e+02 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=20.1
Q ss_pred ccCcCHHHHHHHHHH-CCCeEEEEeCCC--CChhHHHHH
Q 019991 46 KPYPGAISTLEMLAT-TGAKMVVISNSS--RRASTTIDK 81 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~-~G~~v~~vTN~s--~~~~~~~~~ 81 (332)
.+.|=+.+..+.|++ .|...+++||+. |..+.+++.
T Consensus 38 DP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~ 76 (199)
T PF14597_consen 38 DPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQ 76 (199)
T ss_dssp S-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHH
T ss_pred cCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHH
Confidence 356668899999998 568899999975 344444443
No 439
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.40 E-value=1.5e+02 Score=23.38 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.9
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCh
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRA 75 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~ 75 (332)
-....+.++.++++|.+++.+|+++.++
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 3667788899999999999999876543
No 440
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=22.27 E-value=52 Score=26.45 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=25.4
Q ss_pred CccEEEEeccceeecCCccCcCHHHHHHHHHHC
Q 019991 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT 61 (332)
Q Consensus 29 ~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~ 61 (332)
.|++|+||+|-+--++.+.+....+-++.+|++
T Consensus 27 pfrGVV~DvDPeyanteew~~~ip~~~rp~rdq 59 (116)
T COG3785 27 PFRGVVFDVDPEYANTEEWPDEIPVNIRPLRDQ 59 (116)
T ss_pred ccceEEEecCcccccCccChhhccccccccccC
Confidence 689999999999888887776666655555544
No 441
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=1e+02 Score=29.90 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeC
Q 019991 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (332)
Q Consensus 22 ~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN 70 (332)
++.++ ..|.++||+..|=.+.=+.+--...++++.++.|++++++-.
T Consensus 118 ~emle--~~DV~vfDiQDvG~R~Ytyiytm~yameAs~e~~k~fiVLDR 164 (409)
T COG3876 118 KEMLE--DCDVFVFDIQDVGVRSYTYIYTMAYAMEASAENGKEFIVLDR 164 (409)
T ss_pred HHHHh--cCCEEEEechhccceehhHHHHHHHHHHHHHHcCCceEEeCC
Confidence 68888 899999999998777766666667788999999999999976
No 442
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=22.15 E-value=2.7e+02 Score=22.38 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=31.1
Q ss_pred HHhhhcCccEEEEe-ccceeecCCcc------CcCHH---HHHH-HHHHCCCeEEEEeCCC-CChhHHHHHHH
Q 019991 23 HIAETRRFKAWLLD-QFGVLHDGKKP------YPGAI---STLE-MLATTGAKMVVISNSS-RRASTTIDKLK 83 (332)
Q Consensus 23 ~~~~~~~~~~vlfD-lDGvL~~g~~~------ipGa~---e~L~-~L~~~G~~v~~vTN~s-~~~~~~~~~L~ 83 (332)
..+..+.+|.+++| -++...--.++ .++.. ++.+ .|++.|+|++-+.... ....++.+.|+
T Consensus 51 ~~~~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~ 123 (126)
T PF10881_consen 51 NRINQKHVDFVVCDKRDGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLR 123 (126)
T ss_pred HHhcCCCccEEEEECCCCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 33333568899999 55543321111 11222 2333 4567888888775433 34445555543
No 443
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=22.11 E-value=1.2e+02 Score=28.25 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=42.1
Q ss_pred cccccHHHHhhhcCccEEEEeccceeecCCcc-CcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~~-ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.+..++..++. +++.|++-.|+++.+|.-. .-|....--..+..++|+++++-+.+
T Consensus 140 i~Dsa~~~~m~--~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~K 196 (253)
T PRK06372 140 LTDASMCEAVL--NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMK 196 (253)
T ss_pred EehhHHHHHHH--hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccc
Confidence 34556666777 7999999999999998643 55665555566889999999886543
No 444
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.10 E-value=2e+02 Score=26.63 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHCCCeEEEEeCCCC-ChhHHHHHHHhCCCC
Q 019991 50 GAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD 88 (332)
Q Consensus 50 Ga~e~L~~L~~~G~~v~~vTN~s~-~~~~~~~~L~~lGl~ 88 (332)
|..++++.+++.|..-+++=--+. ...++.+.+++.|+.
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVK 142 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCc
Confidence 455555555555554444433221 223344444555554
No 445
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.80 E-value=3.6e+02 Score=27.89 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=27.2
Q ss_pred HHhCCeEEEeCChhhHHHHHHHcCCcEEEEecchhh
Q 019991 237 MILRVQMQLESSPYSLLEGSMQLNLDLTVMEKLQIY 272 (332)
Q Consensus 237 ~~lg~~lmIGDs~~~DI~gA~~aG~~ti~~~~~~~~ 272 (332)
+.-|+.++|||.+. ...|+++||+++++......
T Consensus 142 ~~~G~~~viG~~~~--~~~A~~~gl~~ili~s~esi 175 (526)
T TIGR02329 142 RARGIGAVVGAGLI--TDLAEQAGLHGVFLYSADSV 175 (526)
T ss_pred HHCCCCEEECChHH--HHHHHHcCCceEEEecHHHH
Confidence 44578999999975 56789999999999765544
No 446
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=21.70 E-value=3.5e+02 Score=25.25 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHCCCeEEEEeCCC
Q 019991 50 GAISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 50 Ga~e~L~~L~~~G~~v~~vTN~s 72 (332)
-..|.+..|+..|.++.+||++.
T Consensus 36 ~IVEqV~~L~~~G~evilVSSGa 58 (285)
T KOG1154|consen 36 SIVEQVSELQRMGREVILVSSGA 58 (285)
T ss_pred HHHHHHHHHHhcCceEEEEecch
Confidence 35688899999999999999865
No 447
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.43 E-value=1.6e+02 Score=28.50 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=33.0
Q ss_pred ccEEEEecc-----ceeecCCccCcCH--HHHHHHHHHCCCeEEEEeCCC
Q 019991 30 FKAWLLDQF-----GVLHDGKKPYPGA--ISTLEMLATTGAKMVVISNSS 72 (332)
Q Consensus 30 ~~~vlfDlD-----GvL~~g~~~ipGa--~e~L~~L~~~G~~v~~vTN~s 72 (332)
.+++.+|+| |...=..+-+|.. .++++.|+++|+++.+..+..
T Consensus 40 ~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 89 (339)
T cd06602 40 LDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPA 89 (339)
T ss_pred cceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCc
Confidence 578888866 3332234578999 999999999999999888743
No 448
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=21.37 E-value=1.8e+02 Score=26.25 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=43.3
Q ss_pred EEEEeccceeec---CCccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 32 AWLLDQFGVLHD---GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 32 ~vlfDlDGvL~~---g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
.-+||+|.-+.- +.-++-+..++-+.+++.+..++++|=.+...++.++.|-+.|+..
T Consensus 113 v~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkG 173 (211)
T COG2344 113 VAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVKG 173 (211)
T ss_pred EEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHHHHHHcCCce
Confidence 468999966443 2256778888889999999999999976555667777777777754
No 449
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=21.27 E-value=2.1e+02 Score=29.51 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=38.5
Q ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCC
Q 019991 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD 111 (332)
Q Consensus 48 ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~ 111 (332)
.+|+.++.+.|.+.|+.+. .|.+ ..+.|++.|++...-..+-...+....-++..++
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgG------Tak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP 66 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGG------TAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHP 66 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Eech------HHHHHHHCCCeEEEeecccCCchhhCCccccCCc
Confidence 7899999999999999984 5543 3467899999875423444444444444444443
No 450
>PRK08508 biotin synthase; Provisional
Probab=21.23 E-value=2.3e+02 Score=26.46 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=32.1
Q ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 46 ~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
..++-..++++.+++.+..+.+.++++...++..++|++.|+...
T Consensus 72 ~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 72 KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 344566788889998876666655555545667788999999765
No 451
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=21.22 E-value=1.5e+02 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=19.5
Q ss_pred HCCCeEEEEeCCCCChhHHHHHHHhCCCCc
Q 019991 60 TTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (332)
Q Consensus 60 ~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~ 89 (332)
..+.++++.-+++..+......|+.+|+..
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~ 88 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKN 88 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcc
Confidence 356677777766544444556788888863
No 452
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.22 E-value=1.5e+02 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=22.3
Q ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 47 ~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
--+.+.++++.++++|.+++.+||++.+
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3567788888889999999999987643
No 453
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.17 E-value=2.1e+02 Score=26.67 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=33.4
Q ss_pred eccceeecCC-ccCcCHHHHHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCC
Q 019991 36 DQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (332)
Q Consensus 36 DlDGvL~~g~-~~ipGa~e~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~ 88 (332)
|-|=+++-+. ...||=..+=+.|++.|+|.+++|..+..... +.|+..|+.
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~--d~l~~~g~G 111 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK--DAMEEQGLG 111 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH--HHHHhcCCc
Confidence 4444444443 56788888888888889999999887753322 556665553
No 454
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.07 E-value=2e+02 Score=26.47 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=39.4
Q ss_pred ccCCCCCccccccc-------------cHHHHhhhcCccEEEEeccceeecCCccCcCH----HHHHHHHHHCC-CeEEE
Q 019991 6 SVQSNDPHLFQTLN-------------GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGA----ISTLEMLATTG-AKMVV 67 (332)
Q Consensus 6 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa----~e~L~~L~~~G-~~v~~ 67 (332)
.++.||-|.+.... .+.+.+...++|.+++=-| +++...+-+.+ .++++.|++.+ +++++
T Consensus 3 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GD--i~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 3 ILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGD--VFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred EEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCc--cCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 56778888874321 2333333224677665433 55555443333 35777888887 89999
Q ss_pred EeCCCC
Q 019991 68 ISNSSR 73 (332)
Q Consensus 68 vTN~s~ 73 (332)
+..|.-
T Consensus 81 i~GNHD 86 (253)
T TIGR00619 81 ISGNHD 86 (253)
T ss_pred EccCCC
Confidence 988753
No 455
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.97 E-value=1.4e+02 Score=28.65 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=48.9
Q ss_pred cccCCCCCccccccccHHHHhhhcCccEEEEeccceeecCCc-cCcCHHHHHHHHHHCCCeEEEEeCCCC
Q 019991 5 CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSR 73 (332)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlfDlDGvL~~g~~-~ipGa~e~L~~L~~~G~~v~~vTN~s~ 73 (332)
.|-|..-+....+......+++ +++.|++-.|+++-+|.- -.-|.-.+-...++.++|+++++-+.+
T Consensus 165 ~L~~~gI~~~~I~Dsa~~~~~~--~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 165 ELRQSGIPVTVIVDSAVGAFMS--RVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred HHHHcCCceEEEechHHHHHHH--hCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 3334443344455556777777 899999999999999743 356777777788899999999997654
No 456
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.94 E-value=88 Score=29.38 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=38.0
Q ss_pred ccHHHHhhhcCccEEEEeccceeecCCccCcCHHHHHHHHHHCCCeEEEEeCCCCC
Q 019991 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR 74 (332)
Q Consensus 19 ~~~~~~~~~~~~~~vlfDlDGvL~~g~~~ipGa~e~L~~L~~~G~~v~~vTN~s~~ 74 (332)
+.+.+++. .|+. +.+||+++.-..--.....++....+.|+|+.++|++.+-
T Consensus 199 ~d~~~~~~--~f~~--~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it~Gq~v 250 (270)
T PRK06731 199 KDMIEIIT--NFKD--IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250 (270)
T ss_pred HHHHHHHH--HhCC--CCCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEeCCCCC
Confidence 45666777 6765 6888888876544444556788888899999999997653
No 457
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.72 E-value=6.3e+02 Score=26.60 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=52.2
Q ss_pred eEEEeecCcccchhhhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcEEE---ecCCcc
Q 019991 120 SCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVV---ANPDYV 196 (332)
Q Consensus 120 ~v~~~g~~~~~~~~l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~lIa---TN~D~~ 196 (332)
++.+...+.. +..|...|+ .||.|...+. ..++|+-++..+ ..++|++. |||...
T Consensus 249 k~~IFcadsa-l~~L~k~GI-------kPDyVc~ld~----------~di~~e~~~n~~----~k~ip~~~~~~~h~~vv 306 (594)
T COG2604 249 KATIFCADSA-LPILAKHGI-------KPDYVCSLDP----------DDIAYEFFQNDF----NKDIPLILASITHPRVV 306 (594)
T ss_pred ceEEEECCCc-chHHHhcCC-------CCCeEEEecc----------hHHHHHHHhccc----CCCcceeeeccccHHHH
Confidence 4444444332 446777777 5677777432 122333333322 36777654 444443
Q ss_pred ceec-cc-eecCCChhHHHHHHhcCcccccCCCCHHHHHHHHHH-hCC--eEEEeCChhh
Q 019991 197 TVEA-RA-LRVMPGTLASKFEKLGGEVRWMGKPDKLWATLFTMI-LRV--QMQLESSPYS 251 (332)
Q Consensus 197 ~~~~-~~-~~l~~G~i~~~~e~~g~e~~~~GKP~p~if~~Al~~-lg~--~lmIGDs~~~ 251 (332)
-... ++ ..+..|++.+.+..-.-.....| +|..-+-..+.- +|. .+|||=++.-
T Consensus 307 ~~~kg~k~~~~~~~~~~~~~~l~d~gyi~~G-~SVah~~~~LA~~lg~k~IIfIGQDlAY 365 (594)
T COG2604 307 EYLKGNKIFFFRDGGFSARFNLNDFGYIDTG-GSVAHMCYELAVYLGFKNIIFIGQDLAY 365 (594)
T ss_pred HhhccCcEEEEecchHHHHhccCCcceeecc-ccHHHHHHHHHHHhCCCcEEEEehhhhh
Confidence 2222 22 34556665554432111123344 444444444433 555 6899977643
No 458
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=20.40 E-value=73 Score=27.32 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCcE-EEecCCc
Q 019991 171 LQDLEKILEICASKKIPM-VVANPDY 195 (332)
Q Consensus 171 y~~l~~~l~~l~~~g~~l-IaTN~D~ 195 (332)
|+++.++++.|+++|+++ |+||.+.
T Consensus 31 ~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 31 IPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 467888999998899885 8898763
No 459
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=20.34 E-value=5.9e+02 Score=24.39 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHHCCCeEEEEeCCCCChhHHHHHHHhCCCCccccccccccHHHHHHHHhhcCChhhhhcCCeEEEeecCcccchh
Q 019991 54 TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAIS 133 (332)
Q Consensus 54 ~L~~L~~~G~~v~~vTN~s~~~~~~~~~L~~lGl~~~~f~~Iits~~v~~~~L~~~~~~~~~~~G~~v~~~g~~~~~~~~ 133 (332)
+.+.|+..|+++..|-|=+---+.++++-++.|.+.. +.+..|..+.. ..
T Consensus 36 l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~---------ela~~y~~~f~---------------------~d 85 (300)
T PF01406_consen 36 LRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQ---------ELARRYEEEFF---------------------ED 85 (300)
T ss_dssp HHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HH---------HHHHHHHHHHH---------------------HH
T ss_pred HHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHH---------HHHHHHHHHHH---------------------HH
Confidence 5668889999999999954322446666677776643 23444444331 13
Q ss_pred hhcCCccccCCCCCccEEEEecCCCCCCCCCCCcccCHHHHHHHHHHHHhCCCcEEEecCCcccee
Q 019991 134 LEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVE 199 (332)
Q Consensus 134 l~~~g~~~~~~~~~~~~vv~~~~~~~~~~~g~d~~~~y~~l~~~l~~l~~~g~~lIaTN~D~~~~~ 199 (332)
++.+++ ..|+...- .+...+.+.+.++.|+++|.-....|.+..+-.
T Consensus 86 m~~Lnv------~~p~~~pr-------------ate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv 132 (300)
T PF01406_consen 86 MKALNV------LPPDHYPR-------------ATEHIPEIIELIEKLIDKGHAYESEDGSVYFDV 132 (300)
T ss_dssp HHHTT----------SEEEE-------------GGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-C
T ss_pred HHHcCC------CCCccccc-------------hhccHHHHHHHHHHHHHCCCeEEcCCCcEEEee
Confidence 555555 23344444 334458888889888999987666656665543
No 460
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.06 E-value=1.7e+02 Score=21.93 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 019991 51 AISTLEMLATTGAKMVVISNS 71 (332)
Q Consensus 51 a~e~L~~L~~~G~~v~~vTN~ 71 (332)
..++++.|++.|+++..+|++
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~ 75 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDD 75 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCC
Confidence 556666666666666666554
No 461
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=20.04 E-value=1.5e+02 Score=23.00 Aligned_cols=28 Identities=4% Similarity=0.207 Sum_probs=24.5
Q ss_pred CeEEEEeCCCCChhHHHHHHHhCCCCcc
Q 019991 63 AKMVVISNSSRRASTTIDKLKSLGFDPS 90 (332)
Q Consensus 63 ~~v~~vTN~s~~~~~~~~~L~~lGl~~~ 90 (332)
|+-+++||..+.++.+.+.|.+.+++.+
T Consensus 18 YKSIlltsqDktP~VI~ral~Khnl~~~ 45 (87)
T cd00153 18 YKSILLTSQDKAPQVIRRAMEKHNLESE 45 (87)
T ss_pred EEEEEEecCCcCHHHHHHHHHHhCCCcC
Confidence 6788999999888888889999999876
Done!