Query 019992
Match_columns 332
No_of_seqs 38 out of 40
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 10:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw5_F Photosystem I reaction 10.0 2.1E+02 0.007 25.2 3.3 21 164-184 86-109 (154)
2 2wsc_F Photosystem I reaction 9.9 1.5E+02 0.0051 27.5 2.5 26 161-186 160-188 (231)
3 2wur_A Green fluorescent prote 9.6 71 0.0024 29.7 0.3 32 33-69 123-155 (236)
4 2v2f_A Penicillin binding prot 6.5 2E+02 0.007 17.1 1.3 20 68-87 4-23 (26)
5 3ai4_A Yeast enhanced green fl 6.3 1.8E+02 0.006 27.8 1.3 27 33-64 126-153 (283)
6 3ai5_A Yeast enhanced green fl 5.8 1.5E+02 0.0051 27.9 0.5 27 33-64 126-153 (307)
7 2l8s_A Integrin alpha-1; trans 5.6 4.4E+02 0.015 19.3 2.8 21 308-328 26-46 (54)
8 2l5b_A Activator of apoptosis 4.6 72 0.0025 21.3 -1.8 20 219-238 7-26 (32)
9 1wrg_A LH-1, light-harvesting 4.3 9.1E+02 0.031 17.6 3.8 33 150-182 18-50 (55)
10 2a50_B ASFP595, GFP-like non-f 4.3 1.9E+02 0.0064 25.4 0.1 24 33-60 57-80 (168)
No 1
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_F*
Probab=10.04 E-value=2.1e+02 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHhhhc---cccccCcccc
Q 019992 164 GATLFLLMADS---CARSKNTTRA 184 (332)
Q Consensus 164 GatlFLlmaD~---~~Rp~~~~~~ 184 (332)
=..+||++|.+ ++|.|.+...
T Consensus 86 Pg~lFLYIAGwIGW~GRsYL~a~~ 109 (154)
T 3lw5_F 86 PGILFLYIAGWIGWVGRSYLIAIR 109 (154)
T ss_dssp HHHHHHHHTTTTTTTTTTTTTTCS
T ss_pred hhHHHHHHhhhhhhhhHHHHHHHh
Confidence 34679999876 8999988743
No 2
>2wsc_F Photosystem I reaction center subunit III, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_F* 2wsf_F*
Probab=9.86 E-value=1.5e+02 Score=27.49 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHh---hhccccccCccccCC
Q 019992 161 FNIGATLFLLM---ADSCARSKNTTRACN 186 (332)
Q Consensus 161 FyiGatlFLlm---aD~~~Rp~~~~~~~~ 186 (332)
|.+=.-+||++ +.|++|.|.+.....
T Consensus 160 F~IPgllFLYIAGwIGW~GR~YL~av~~~ 188 (231)
T 2wsc_F 160 FITPGILFLYIAGWIGWVGRSYLIAIRDE 188 (231)
T ss_dssp TSHHHHHHHHHTTTTTTTTTTTTTTCSCS
T ss_pred eeechhhHHHHhcccccccHHHHHHhccC
Confidence 55566789999 456999998885433
No 3
>2wur_A Green fluorescent protein; chromophore, beta-barrel, luminescence, photoprotein, bioluminescence; HET: CSY IPA EOH; 0.90A {Aequorea victoria} PDB: 1emk_A* 1eme_A* 1emc_A* 1eml_A* 1s6z_A* 1z1p_A* 1z1q_A* 1q4a_A* 1c4f_A* 1emb_A* 1emg_A* 1ema_A* 1hcj_A* 1q4b_A* 1w7s_A* 1w7t_A* 1w7u_A* 2emd_A* 1emm_A* 2emn_A* ...
Probab=9.56 E-value=71 Score=29.66 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=22.8
Q ss_pred cccccCCcccccCcceecccCCCCCCCC-CCCCCCccc
Q 019992 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP-ASHAPTDDA 69 (332)
Q Consensus 33 ~~~~~~p~~~~~~~~~~~~~~~~we~s~-~~~~~~~~~ 69 (332)
-++.+|| .+.++.--|.+ ||||+ -.|...|..
T Consensus 123 f~GvnFP----~dGPVMqkkt~-weps~e~~~~~~d~~ 155 (236)
T 2wur_A 123 LKGIDFK----EDGNILGHKLE-YNYNSHNVYIMADKQ 155 (236)
T ss_dssp EEEECCC----TTSTTTTTCBC-SCCCCCEEEEEEEGG
T ss_pred EEEECCC----CCCCcccccee-ecCCcceEEEcccCC
Confidence 4677888 57788777888 99997 356544444
No 4
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=6.52 E-value=2e+02 Score=17.05 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=14.8
Q ss_pred cccccccccccceeeeccCC
Q 019992 68 DADYKILNKNSNIFETLSSD 87 (332)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~ 87 (332)
..++.|.+++.+++.++.++
T Consensus 4 ~~ss~IYD~~g~~i~~lg~e 23 (26)
T 2v2f_A 4 TTSSKIYDNKNQLIADLGSE 23 (26)
T ss_pred CCCCEEEeCCCCEeeecccc
Confidence 34567888888988888554
No 5
>3ai4_A Yeast enhanced green fluorescent protein, DNA POL IOTA; UBM, ubiquitin-binding motif, GFP, fusion, fluorescent prote replication; HET: CR2; 1.60A {Aequorea victoria} PDB: 2kwu_A* 2ktf_B* 2l0g_A*
Probab=6.29 E-value=1.8e+02 Score=27.76 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=20.2
Q ss_pred cccccCCcccccCcceecccCCCCCCCC-CCCC
Q 019992 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP-ASHA 64 (332)
Q Consensus 33 ~~~~~~p~~~~~~~~~~~~~~~~we~s~-~~~~ 64 (332)
-++.+|| .+.++.--|.+ ||||+ -.|.
T Consensus 126 f~GvnFP----~dGPVMqkkt~-weps~Ek~y~ 153 (283)
T 3ai4_A 126 LKGIDFK----EDGNILGHKLE-YNYNSHNVYI 153 (283)
T ss_dssp EEEECCC----TTSTTTTTCBC-SCCCCEEEEE
T ss_pred EEEECCC----CCCCcccccee-ecCCcceEEE
Confidence 5677888 57888877878 99998 3444
No 6
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=5.76 E-value=1.5e+02 Score=27.89 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=20.1
Q ss_pred cccccCCcccccCcceecccCCCCCCCC-CCCC
Q 019992 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP-ASHA 64 (332)
Q Consensus 33 ~~~~~~p~~~~~~~~~~~~~~~~we~s~-~~~~ 64 (332)
-+|.+|| .+.++.--|.+ ||||+ -.|.
T Consensus 126 ~~g~~fp----~~gpvm~~~~~-~~~~~~~~~~ 153 (307)
T 3ai5_A 126 LKGIDFK----EDGNILGHKLE-YNYNSHNVYI 153 (307)
T ss_dssp EEEECCC----TTSTTTTTCBC-SCCCCEEEEE
T ss_pred EEEECCC----CCCCcccccee-ecCCcceEEE
Confidence 4577888 57788777878 99997 3454
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.56 E-value=4.4e+02 Score=19.33 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=15.4
Q ss_pred HHHHHHhhhccccccccCCCC
Q 019992 308 LMRVAWFAGFTSQARRQQSPA 328 (332)
Q Consensus 308 LMrlaW~~g~~~~~~~~~~~~ 328 (332)
+.=+.|-.||-.|.++++...
T Consensus 26 ii~~LwK~GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 26 LILALWKIGFFKRPLKKKMEK 46 (54)
T ss_dssp HHHHHHHHHHTTSCCSCCCCC
T ss_pred HHHHHHHcCcccCCCcchhhH
Confidence 344568889999998877654
No 8
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=4.58 E-value=72 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=13.8
Q ss_pred cccCCCCChhHHHHHHHHHH
Q 019992 219 FLQPQLPFIPFAVLLGPYLL 238 (332)
Q Consensus 219 ~~wP~l~~~a~~vaL~PYLv 238 (332)
..|||++-++-.++|+-.|+
T Consensus 7 ~yw~wlcaaa~vaalaawll 26 (32)
T 2l5b_A 7 TYWPWLCAAAQVAALAAWLL 26 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 46899887776566666654
No 9
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=4.35 E-value=9.1e+02 Score=17.65 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=26.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhccccccCcc
Q 019992 150 SLLSLIGLDCIFNIGATLFLLMADSCARSKNTT 182 (332)
Q Consensus 150 ~lLsLf~~ealFyiGatlFLlmaD~~~Rp~~~~ 182 (332)
+|=..|..-..+|.+++++-.+.-+.|||-.+-
T Consensus 18 EfH~~f~~~~~~F~~iAvvAH~L~~~wrPWl~g 50 (55)
T 1wrg_A 18 EFHKIFTSSILVFFGVAAFAHLLVWIWRPWVPG 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 455566677788999999999999999987654
No 10
>2a50_B ASFP595, GFP-like non-fluorescent chromoprotein FP595 CHAI; ASCP, fluorescent protein, photochromic prote reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a53_B* 2a54_B* 2a56_B* 2a52_B* 3cfa_A* 3cfh_A* 3cff_A*
Probab=4.30 E-value=1.9e+02 Score=25.42 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.8
Q ss_pred cccccCCcccccCcceecccCCCCCCCC
Q 019992 33 IPVVTSPCTHVKHSPLCCTKLTPWEPSP 60 (332)
Q Consensus 33 ~~~~~~p~~~~~~~~~~~~~~~~we~s~ 60 (332)
-+|.+|| .+.++.--|..-||||=
T Consensus 57 f~G~nFP----~dGPVMqkkt~~wePs~ 80 (168)
T 2a50_B 57 ILGNNFP----ADGPVMQNKAGRWEPAT 80 (168)
T ss_dssp EEEECCC----TTSTTTTTCCCEECCEE
T ss_pred EEEECCC----CCCCcccccccccCCee
Confidence 5688898 67888888888899993
Done!