Query 019993
Match_columns 332
No_of_seqs 163 out of 1398
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 3.4E-68 7.4E-73 494.7 33.2 309 21-330 1-310 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 3.2E-68 6.9E-73 495.8 33.0 310 22-331 1-311 (312)
3 PLN00106 malate dehydrogenase 100.0 7E-66 1.5E-70 481.8 35.6 315 10-324 8-322 (323)
4 COG0039 Mdh Malate/lactate deh 100.0 2.1E-66 4.6E-71 477.4 31.1 297 21-331 1-312 (313)
5 PTZ00325 malate dehydrogenase; 100.0 3.5E-63 7.6E-68 463.2 35.2 317 14-332 2-319 (321)
6 cd05290 LDH_3 A subgroup of L- 100.0 9.7E-64 2.1E-68 465.8 31.0 286 22-323 1-306 (307)
7 PRK05086 malate dehydrogenase; 100.0 2.6E-62 5.6E-67 458.0 35.0 310 21-332 1-312 (312)
8 TIGR01759 MalateDH-SF1 malate 100.0 1.1E-62 2.3E-67 461.1 30.7 295 19-326 2-323 (323)
9 cd05293 LDH_1 A subgroup of L- 100.0 1.5E-62 3.3E-67 459.0 31.4 290 20-324 3-311 (312)
10 KOG1495 Lactate dehydrogenase 100.0 1E-62 2.2E-67 433.0 27.2 288 19-323 19-327 (332)
11 PLN02602 lactate dehydrogenase 100.0 9.3E-62 2E-66 458.6 32.7 291 21-326 38-348 (350)
12 PRK00066 ldh L-lactate dehydro 100.0 8.8E-61 1.9E-65 448.3 32.8 291 20-326 6-313 (315)
13 PRK05442 malate dehydrogenase; 100.0 3.2E-61 6.9E-66 451.7 29.4 298 19-329 3-325 (326)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 3.3E-61 7.2E-66 447.8 27.4 281 25-321 1-299 (299)
15 cd00704 MDH Malate dehydrogena 100.0 2.5E-60 5.4E-65 445.8 29.0 294 21-327 1-323 (323)
16 PLN00112 malate dehydrogenase 100.0 5.3E-60 1.2E-64 455.3 31.9 301 17-330 97-424 (444)
17 TIGR01757 Malate-DH_plant mala 100.0 6.5E-60 1.4E-64 448.7 31.8 302 16-330 40-368 (387)
18 PTZ00117 malate dehydrogenase; 100.0 2.9E-59 6.3E-64 439.2 34.1 297 19-329 4-317 (319)
19 cd05291 HicDH_like L-2-hydroxy 100.0 1.6E-59 3.5E-64 439.4 30.9 288 21-324 1-305 (306)
20 PTZ00082 L-lactate dehydrogena 100.0 7.7E-59 1.7E-63 435.9 34.1 292 19-324 5-318 (321)
21 cd01338 MDH_choloroplast_like 100.0 1.9E-59 4.1E-64 439.6 29.8 295 19-326 1-320 (322)
22 cd00300 LDH_like L-lactate deh 100.0 2.8E-59 6E-64 436.2 29.8 286 23-323 1-299 (300)
23 TIGR01763 MalateDH_bact malate 100.0 4.4E-59 9.5E-64 435.2 30.7 289 21-325 2-304 (305)
24 KOG1494 NAD-dependent malate d 100.0 5.5E-59 1.2E-63 411.2 29.3 321 11-331 19-340 (345)
25 cd05292 LDH_2 A subgroup of L- 100.0 1.6E-57 3.4E-62 425.9 31.8 288 21-324 1-306 (308)
26 TIGR01758 MDH_euk_cyt malate d 100.0 3.7E-57 7.9E-62 424.5 30.3 296 22-327 1-323 (324)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 2.6E-57 5.7E-62 426.2 27.9 296 19-327 1-325 (325)
28 cd01339 LDH-like_MDH L-lactate 100.0 1.1E-55 2.3E-60 412.8 30.8 287 23-323 1-299 (300)
29 cd05294 LDH-like_MDH_nadp A la 100.0 1.5E-55 3.2E-60 412.4 30.5 290 21-324 1-307 (309)
30 PRK06223 malate dehydrogenase; 100.0 3.1E-55 6.8E-60 411.0 32.7 292 20-325 2-305 (307)
31 PLN00135 malate dehydrogenase 100.0 3.7E-55 8E-60 407.2 28.6 272 48-331 15-309 (309)
32 cd05295 MDH_like Malate dehydr 100.0 1.9E-55 4.2E-60 423.5 27.4 297 15-327 118-451 (452)
33 TIGR01756 LDH_protist lactate 100.0 4.1E-54 8.9E-59 401.2 28.6 270 48-330 17-312 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 4.2E-51 9.1E-56 375.0 29.4 254 23-323 1-262 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 1.1E-46 2.4E-51 326.6 21.8 305 19-331 3-331 (332)
36 PF02866 Ldh_1_C: lactate/mala 100.0 2.5E-33 5.4E-38 241.8 14.2 159 166-330 1-174 (174)
37 cd05197 GH4_glycoside_hydrolas 100.0 2.7E-31 5.8E-36 257.5 25.1 284 21-326 1-391 (425)
38 PRK15076 alpha-galactosidase; 100.0 4.9E-31 1.1E-35 256.5 24.6 288 21-327 2-386 (431)
39 cd05296 GH4_P_beta_glucosidase 100.0 1.9E-30 4.1E-35 251.1 26.3 289 21-326 1-380 (419)
40 PF00056 Ldh_1_N: lactate/mala 100.0 3.8E-32 8.3E-37 226.2 11.8 139 21-164 1-141 (141)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 1.6E-29 3.5E-34 245.5 27.7 293 21-327 1-395 (437)
42 COG1486 CelF Alpha-galactosida 100.0 3.2E-28 6.9E-33 231.8 23.6 293 19-327 2-398 (442)
43 cd05297 GH4_alpha_glucosidase_ 100.0 4.2E-27 9E-32 229.2 25.9 289 21-327 1-389 (423)
44 PF02056 Glyco_hydro_4: Family 99.9 4E-21 8.6E-26 165.1 13.9 151 22-183 1-183 (183)
45 COG1004 Ugd Predicted UDP-gluc 99.1 2.6E-09 5.5E-14 101.0 16.4 115 21-147 1-131 (414)
46 PF02737 3HCDH_N: 3-hydroxyacy 99.0 9.4E-10 2E-14 95.3 7.9 118 22-167 1-137 (180)
47 COG1250 FadB 3-hydroxyacyl-CoA 99.0 2.3E-09 5.1E-14 99.5 10.4 122 20-166 3-140 (307)
48 PRK07066 3-hydroxybutyryl-CoA 98.8 4.5E-08 9.8E-13 92.1 13.1 118 21-165 8-140 (321)
49 TIGR02437 FadB fatty oxidation 98.8 6.2E-08 1.3E-12 100.6 14.4 134 5-166 292-450 (714)
50 TIGR02441 fa_ox_alpha_mit fatt 98.8 6.1E-08 1.3E-12 100.9 14.1 133 5-165 316-471 (737)
51 PRK11730 fadB multifunctional 98.8 7.4E-08 1.6E-12 100.1 14.5 133 5-165 292-449 (715)
52 PF03721 UDPG_MGDP_dh_N: UDP-g 98.8 1.8E-08 4E-13 87.6 8.5 133 21-169 1-151 (185)
53 TIGR02440 FadJ fatty oxidation 98.8 1E-07 2.2E-12 98.9 14.0 134 5-166 284-442 (699)
54 PRK07819 3-hydroxybutyryl-CoA 98.8 1.7E-07 3.7E-12 87.1 14.0 118 21-166 6-143 (286)
55 PRK11154 fadJ multifunctional 98.7 1E-07 2.3E-12 99.0 13.1 119 20-166 309-447 (708)
56 PRK08293 3-hydroxybutyryl-CoA 98.6 3.3E-07 7.2E-12 85.2 12.4 121 20-166 3-142 (287)
57 KOG2304 3-hydroxyacyl-CoA dehy 98.6 4.4E-08 9.5E-13 85.8 5.4 120 20-166 11-154 (298)
58 PLN02353 probable UDP-glucose 98.6 7.3E-07 1.6E-11 88.3 12.6 120 20-146 1-137 (473)
59 PRK05808 3-hydroxybutyryl-CoA 98.5 1.6E-06 3.6E-11 80.3 13.7 118 21-166 4-140 (282)
60 TIGR01915 npdG NADPH-dependent 98.5 2.3E-06 4.9E-11 76.4 13.8 100 21-142 1-106 (219)
61 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 5.1E-07 1.1E-11 76.4 8.6 94 22-137 1-103 (157)
62 PRK06035 3-hydroxyacyl-CoA deh 98.5 1.6E-06 3.5E-11 80.7 12.7 118 21-166 4-143 (291)
63 PF02719 Polysacc_synt_2: Poly 98.5 5.3E-08 1.2E-12 89.8 1.8 120 23-143 1-138 (293)
64 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 2E-06 4.4E-11 85.9 12.3 104 19-144 4-125 (503)
65 PF01073 3Beta_HSD: 3-beta hyd 98.4 1.4E-06 3E-11 80.8 10.0 108 24-131 1-110 (280)
66 COG1086 Predicted nucleoside-d 98.4 4.4E-06 9.6E-11 82.5 13.8 123 20-143 250-386 (588)
67 PLN02166 dTDP-glucose 4,6-dehy 98.4 2.6E-06 5.5E-11 83.9 12.3 170 19-196 119-297 (436)
68 PRK08268 3-hydroxy-acyl-CoA de 98.4 2.6E-06 5.6E-11 85.3 12.1 118 21-166 8-144 (507)
69 PRK07530 3-hydroxybutyryl-CoA 98.4 6.9E-06 1.5E-10 76.5 13.9 101 20-143 4-123 (292)
70 PRK15181 Vi polysaccharide bio 98.4 8.3E-06 1.8E-10 77.8 14.3 173 19-196 14-199 (348)
71 PLN02427 UDP-apiose/xylose syn 98.3 5.7E-06 1.2E-10 79.9 11.9 114 18-137 12-135 (386)
72 PRK09260 3-hydroxybutyryl-CoA 98.3 5.5E-06 1.2E-10 77.0 11.1 99 21-141 2-119 (288)
73 PRK06130 3-hydroxybutyryl-CoA 98.3 9.1E-06 2E-10 76.3 12.5 101 21-143 5-119 (311)
74 PRK06129 3-hydroxyacyl-CoA deh 98.3 1.7E-05 3.7E-10 74.5 14.0 102 21-143 3-122 (308)
75 PRK07531 bifunctional 3-hydrox 98.3 8.7E-06 1.9E-10 81.4 12.6 104 20-144 4-121 (495)
76 PLN02545 3-hydroxybutyryl-CoA 98.3 1.3E-05 2.9E-10 74.7 12.9 100 21-143 5-123 (295)
77 PLN00198 anthocyanidin reducta 98.2 2.5E-05 5.3E-10 74.0 14.1 175 19-196 8-202 (338)
78 TIGR02622 CDP_4_6_dhtase CDP-g 98.2 3.1E-05 6.8E-10 73.7 14.5 160 19-181 3-170 (349)
79 PLN02650 dihydroflavonol-4-red 98.2 2.9E-05 6.2E-10 74.0 14.2 177 19-197 4-198 (351)
80 TIGR03026 NDP-sugDHase nucleot 98.2 2.7E-05 5.8E-10 76.2 14.1 119 21-153 1-137 (411)
81 PLN02662 cinnamyl-alcohol dehy 98.2 3.4E-05 7.3E-10 72.3 14.0 114 20-136 4-125 (322)
82 PRK15057 UDP-glucose 6-dehydro 98.2 2.1E-05 4.6E-10 76.2 12.8 112 21-146 1-127 (388)
83 PRK08125 bifunctional UDP-gluc 98.2 2.2E-05 4.7E-10 81.4 13.7 169 19-196 314-497 (660)
84 PLN02206 UDP-glucuronate decar 98.2 1.7E-05 3.7E-10 78.2 12.0 169 20-196 119-296 (442)
85 KOG1502 Flavonol reductase/cin 98.2 2.8E-05 6E-10 72.8 12.2 117 19-140 5-130 (327)
86 COG2085 Predicted dinucleotide 98.1 2.8E-05 6.1E-10 68.1 10.7 97 20-141 1-97 (211)
87 TIGR01181 dTDP_gluc_dehyt dTDP 98.1 4.5E-05 9.7E-10 70.9 12.9 167 22-196 1-184 (317)
88 PLN02695 GDP-D-mannose-3',5'-e 98.1 1.1E-05 2.3E-10 77.8 8.4 172 19-197 20-202 (370)
89 CHL00194 ycf39 Ycf39; Provisio 98.1 2.2E-05 4.7E-10 73.9 10.3 107 21-137 1-109 (317)
90 COG0240 GpsA Glycerol-3-phosph 98.1 3.2E-05 6.9E-10 72.3 11.0 117 20-165 1-131 (329)
91 TIGR03589 PseB UDP-N-acetylglu 98.1 3E-05 6.5E-10 73.2 11.2 113 20-137 4-124 (324)
92 COG1087 GalE UDP-glucose 4-epi 98.1 3.9E-05 8.4E-10 70.5 11.1 163 21-196 1-176 (329)
93 PRK15182 Vi polysaccharide bio 98.1 0.0001 2.2E-09 72.3 14.9 113 18-146 4-130 (425)
94 PLN02214 cinnamoyl-CoA reducta 98.0 7.6E-05 1.6E-09 71.0 13.3 169 20-196 10-195 (342)
95 PRK11064 wecC UDP-N-acetyl-D-m 98.0 4.8E-05 1E-09 74.5 11.8 110 19-146 2-129 (415)
96 PRK06194 hypothetical protein; 98.0 0.00011 2.4E-09 67.6 13.3 159 20-194 6-192 (287)
97 PRK11908 NAD-dependent epimera 98.0 6.5E-05 1.4E-09 71.4 11.7 163 21-196 2-183 (347)
98 PRK00094 gpsA NAD(P)H-dependen 98.0 7.4E-05 1.6E-09 70.3 11.5 100 20-141 1-109 (325)
99 TIGR03466 HpnA hopanoid-associ 98.0 6E-05 1.3E-09 70.5 10.5 111 21-137 1-112 (328)
100 COG0451 WcaG Nucleoside-diphos 98.0 5.1E-05 1.1E-09 70.4 9.9 169 21-198 1-178 (314)
101 PLN02989 cinnamyl-alcohol dehy 97.9 0.00025 5.5E-09 66.6 14.4 175 20-196 5-198 (325)
102 PRK10084 dTDP-glucose 4,6 dehy 97.9 0.00012 2.7E-09 69.5 12.3 176 21-197 1-202 (352)
103 PF03807 F420_oxidored: NADP o 97.9 2.1E-05 4.5E-10 60.5 5.7 94 22-139 1-96 (96)
104 TIGR01472 gmd GDP-mannose 4,6- 97.9 0.00016 3.5E-09 68.6 13.0 159 21-184 1-177 (343)
105 PRK10217 dTDP-glucose 4,6-dehy 97.9 0.00017 3.7E-09 68.6 13.2 176 21-197 2-195 (355)
106 PLN03209 translocon at the inn 97.9 0.00011 2.3E-09 74.0 12.1 118 17-137 77-207 (576)
107 PLN02778 3,5-epimerase/4-reduc 97.9 0.00018 3.9E-09 67.2 12.9 96 19-137 8-110 (298)
108 PLN02896 cinnamyl-alcohol dehy 97.9 0.00014 3E-09 69.4 11.6 172 20-196 10-210 (353)
109 PRK08229 2-dehydropantoate 2-r 97.9 0.00011 2.5E-09 69.7 10.9 101 20-143 2-113 (341)
110 PRK10675 UDP-galactose-4-epime 97.9 0.00014 3.1E-09 68.5 11.6 113 21-137 1-123 (338)
111 PRK06522 2-dehydropantoate 2-r 97.9 0.0002 4.4E-09 66.6 12.3 102 21-144 1-107 (304)
112 PF03446 NAD_binding_2: NAD bi 97.9 0.00011 2.3E-09 62.5 9.5 91 20-137 1-94 (163)
113 PLN02986 cinnamyl-alcohol dehy 97.9 0.00044 9.6E-09 64.9 14.5 115 21-137 6-127 (322)
114 PRK14619 NAD(P)H-dependent gly 97.9 0.00013 2.7E-09 68.6 10.7 78 20-138 4-83 (308)
115 KOG1429 dTDP-glucose 4-6-dehyd 97.8 4.6E-05 9.9E-10 69.4 7.2 112 18-137 25-140 (350)
116 PTZ00345 glycerol-3-phosphate 97.8 0.00019 4.1E-09 68.9 11.7 97 21-137 12-129 (365)
117 PLN02583 cinnamoyl-CoA reducta 97.8 0.00044 9.5E-09 64.4 13.5 113 21-137 7-127 (297)
118 PRK12921 2-dehydropantoate 2-r 97.8 0.00033 7.1E-09 65.4 12.6 120 21-169 1-128 (305)
119 PF13460 NAD_binding_10: NADH( 97.8 0.00027 5.8E-09 60.6 11.1 92 23-136 1-96 (183)
120 PLN02260 probable rhamnose bio 97.8 0.00038 8.2E-09 72.3 14.1 181 17-197 3-194 (668)
121 PRK14620 NAD(P)H-dependent gly 97.8 0.0002 4.4E-09 67.7 11.1 98 21-142 1-111 (326)
122 TIGR03376 glycerol3P_DH glycer 97.8 0.00023 4.9E-09 67.8 11.1 96 22-137 1-116 (342)
123 PRK12439 NAD(P)H-dependent gly 97.8 0.0002 4.3E-09 68.3 10.7 99 19-142 6-116 (341)
124 PLN02653 GDP-mannose 4,6-dehyd 97.8 0.00019 4.2E-09 67.9 10.6 164 16-184 2-183 (340)
125 PRK14618 NAD(P)H-dependent gly 97.8 0.00023 5E-09 67.4 10.9 71 20-96 4-82 (328)
126 PLN02572 UDP-sulfoquinovose sy 97.7 0.00021 4.6E-09 70.5 10.4 175 19-197 46-263 (442)
127 TIGR01777 yfcH conserved hypot 97.7 0.00025 5.3E-09 65.2 10.0 99 23-130 1-103 (292)
128 PRK11150 rfaD ADP-L-glycero-D- 97.7 0.00038 8.3E-09 64.8 10.9 160 23-196 2-174 (308)
129 PLN02240 UDP-glucose 4-epimera 97.7 0.00053 1.2E-08 65.0 11.8 116 19-137 4-131 (352)
130 PRK09987 dTDP-4-dehydrorhamnos 97.6 0.00015 3.3E-09 67.6 7.4 99 21-137 1-103 (299)
131 PLN02253 xanthoxin dehydrogena 97.6 0.001 2.3E-08 61.0 12.8 147 19-182 17-187 (280)
132 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00073 1.6E-08 64.4 11.6 125 20-157 9-149 (436)
133 PRK06249 2-dehydropantoate 2-r 97.6 0.00044 9.5E-09 65.1 10.3 123 19-168 4-131 (313)
134 PLN02686 cinnamoyl-CoA reducta 97.6 0.00053 1.2E-08 66.0 11.0 177 17-196 50-250 (367)
135 PRK08643 acetoin reductase; Va 97.6 0.0036 7.7E-08 56.5 15.9 115 21-139 3-140 (256)
136 PRK07201 short chain dehydroge 97.6 0.001 2.2E-08 68.7 13.7 111 21-134 1-122 (657)
137 COG0300 DltE Short-chain dehyd 97.6 0.0016 3.5E-08 59.6 13.4 118 17-138 3-143 (265)
138 PRK12384 sorbitol-6-phosphate 97.6 0.0031 6.8E-08 57.0 15.4 117 21-139 3-142 (259)
139 TIGR02354 thiF_fam2 thiamine b 97.6 0.0011 2.5E-08 58.3 12.0 99 20-135 21-142 (200)
140 COG1088 RfbB dTDP-D-glucose 4, 97.6 0.00084 1.8E-08 61.7 11.3 165 21-185 1-174 (340)
141 PRK07523 gluconate 5-dehydroge 97.6 0.0017 3.6E-08 58.7 13.2 116 20-139 10-147 (255)
142 PRK13394 3-hydroxybutyrate deh 97.6 0.00057 1.2E-08 61.8 10.1 115 20-138 7-144 (262)
143 PRK08267 short chain dehydroge 97.6 0.0018 3.9E-08 58.6 13.4 115 21-139 2-137 (260)
144 PRK07102 short chain dehydroge 97.5 0.005 1.1E-07 55.1 15.9 116 21-139 2-136 (243)
145 PRK07417 arogenate dehydrogena 97.5 0.00062 1.3E-08 63.0 10.2 64 21-96 1-65 (279)
146 PF10727 Rossmann-like: Rossma 97.5 0.00065 1.4E-08 55.3 9.0 101 20-146 10-115 (127)
147 PRK08269 3-hydroxybutyryl-CoA 97.5 0.00072 1.6E-08 63.7 10.5 111 32-166 1-137 (314)
148 KOG2666 UDP-glucose/GDP-mannos 97.5 0.00048 1E-08 63.6 8.6 77 21-102 2-92 (481)
149 PLN02657 3,8-divinyl protochlo 97.5 0.0012 2.6E-08 64.1 12.0 113 19-137 59-181 (390)
150 TIGR02197 heptose_epim ADP-L-g 97.5 0.00067 1.5E-08 63.1 9.9 109 23-137 1-113 (314)
151 COG1748 LYS9 Saccharopine dehy 97.5 0.0014 3E-08 63.1 12.0 75 20-97 1-77 (389)
152 PRK12829 short chain dehydroge 97.5 0.0036 7.7E-08 56.6 14.3 36 19-56 10-45 (264)
153 PRK07231 fabG 3-ketoacyl-(acyl 97.5 0.0037 7.9E-08 56.0 14.2 114 20-138 5-141 (251)
154 PRK06482 short chain dehydroge 97.5 0.0026 5.5E-08 58.2 13.4 113 21-138 3-135 (276)
155 TIGR01214 rmlD dTDP-4-dehydror 97.5 0.0005 1.1E-08 63.2 8.7 95 22-137 1-99 (287)
156 PRK05875 short chain dehydroge 97.5 0.0046 9.9E-08 56.5 15.0 159 20-194 7-188 (276)
157 PRK06914 short chain dehydroge 97.5 0.0056 1.2E-07 56.1 15.6 116 20-138 3-140 (280)
158 PRK07806 short chain dehydroge 97.5 0.0013 2.7E-08 59.1 10.9 116 19-138 5-135 (248)
159 PRK05865 hypothetical protein; 97.5 0.00083 1.8E-08 71.0 10.9 104 21-140 1-105 (854)
160 PRK06172 short chain dehydroge 97.4 0.0029 6.3E-08 57.0 13.2 156 20-194 7-186 (253)
161 PRK08213 gluconate 5-dehydroge 97.4 0.0053 1.1E-07 55.6 14.9 115 20-138 12-149 (259)
162 PRK11199 tyrA bifunctional cho 97.4 0.00085 1.8E-08 64.8 10.0 53 20-96 98-150 (374)
163 PF11975 Glyco_hydro_4C: Famil 97.4 0.00087 1.9E-08 60.4 9.5 78 241-327 134-215 (232)
164 PRK12320 hypothetical protein; 97.4 0.001 2.2E-08 68.8 11.1 100 21-137 1-101 (699)
165 PRK05717 oxidoreductase; Valid 97.4 0.0017 3.7E-08 58.7 11.5 146 20-182 10-176 (255)
166 PRK07067 sorbitol dehydrogenas 97.4 0.0019 4.1E-08 58.4 11.7 152 21-190 7-178 (257)
167 PRK11880 pyrroline-5-carboxyla 97.4 0.0011 2.5E-08 60.7 10.3 96 20-141 2-98 (267)
168 PRK11559 garR tartronate semia 97.4 0.00098 2.1E-08 62.1 10.0 65 20-96 2-66 (296)
169 PRK08340 glucose-1-dehydrogena 97.4 0.0041 8.9E-08 56.4 13.9 74 21-99 1-87 (259)
170 COG4221 Short-chain alcohol de 97.4 0.0067 1.5E-07 54.5 14.7 157 21-193 7-181 (246)
171 PRK07502 cyclohexadienyl dehyd 97.4 0.0013 2.7E-08 61.8 10.7 67 21-96 7-74 (307)
172 PRK07634 pyrroline-5-carboxyla 97.4 0.0021 4.5E-08 58.1 11.7 70 19-96 3-74 (245)
173 TIGR00872 gnd_rel 6-phosphoglu 97.4 0.0015 3.2E-08 61.1 10.9 95 21-140 1-96 (298)
174 PRK08655 prephenate dehydrogen 97.4 0.0016 3.4E-08 64.2 11.5 66 21-96 1-66 (437)
175 PRK06180 short chain dehydroge 97.4 0.0036 7.8E-08 57.4 13.3 114 20-138 4-137 (277)
176 PRK12937 short chain dehydroge 97.4 0.0031 6.8E-08 56.3 12.6 147 20-182 5-172 (245)
177 PRK08278 short chain dehydroge 97.4 0.0079 1.7E-07 55.1 15.4 159 20-194 6-193 (273)
178 PRK12549 shikimate 5-dehydroge 97.4 0.0015 3.3E-08 60.7 10.7 76 18-98 125-204 (284)
179 KOG1430 C-3 sterol dehydrogena 97.4 0.0011 2.3E-08 63.3 9.7 110 19-130 3-119 (361)
180 PRK06924 short chain dehydroge 97.4 0.0021 4.6E-08 57.8 11.3 34 21-56 2-35 (251)
181 PRK12429 3-hydroxybutyrate deh 97.4 0.0014 3E-08 59.0 10.2 114 20-138 4-140 (258)
182 PLN02688 pyrroline-5-carboxyla 97.4 0.0012 2.6E-08 60.4 9.8 94 21-140 1-98 (266)
183 PRK07680 late competence prote 97.4 0.0018 4E-08 59.6 11.0 97 21-141 1-100 (273)
184 PRK05876 short chain dehydroge 97.4 0.0047 1E-07 56.8 13.8 115 20-138 6-143 (275)
185 TIGR01505 tartro_sem_red 2-hyd 97.4 0.001 2.2E-08 61.9 9.3 63 22-96 1-63 (291)
186 PRK07326 short chain dehydroge 97.4 0.0046 1E-07 55.0 13.3 114 21-139 7-141 (237)
187 PLN00141 Tic62-NAD(P)-related 97.4 0.0016 3.5E-08 59.0 10.4 110 20-136 17-130 (251)
188 PRK09135 pteridine reductase; 97.4 0.0046 9.9E-08 55.2 13.3 147 21-182 7-175 (249)
189 PRK07063 short chain dehydroge 97.4 0.0066 1.4E-07 55.0 14.4 157 20-193 7-186 (260)
190 PRK07814 short chain dehydroge 97.3 0.0077 1.7E-07 54.8 14.7 156 19-193 9-187 (263)
191 PRK10538 malonic semialdehyde 97.3 0.0029 6.4E-08 56.9 11.8 34 21-56 1-34 (248)
192 PF01370 Epimerase: NAD depend 97.3 0.00032 6.9E-09 62.2 5.2 165 23-196 1-174 (236)
193 PRK08265 short chain dehydroge 97.3 0.005 1.1E-07 56.0 13.2 153 20-193 6-178 (261)
194 TIGR01179 galE UDP-glucose-4-e 97.3 0.0017 3.7E-08 60.4 10.4 110 22-137 1-120 (328)
195 PRK12745 3-ketoacyl-(acyl-carr 97.3 0.01 2.2E-07 53.3 15.2 101 21-125 3-125 (256)
196 TIGR03206 benzo_BadH 2-hydroxy 97.3 0.0037 8E-08 56.0 12.0 115 20-138 3-139 (250)
197 PRK06545 prephenate dehydrogen 97.3 0.0021 4.5E-08 61.8 10.9 68 21-96 1-68 (359)
198 PRK09291 short chain dehydroge 97.3 0.01 2.2E-07 53.4 14.8 78 21-100 3-85 (257)
199 PRK07069 short chain dehydroge 97.3 0.014 3E-07 52.2 15.6 114 22-138 1-138 (251)
200 PRK08945 putative oxoacyl-(acy 97.3 0.0098 2.1E-07 53.4 14.6 121 16-138 8-152 (247)
201 PRK12828 short chain dehydroge 97.3 0.0023 4.9E-08 56.8 10.3 115 20-138 7-141 (239)
202 PRK07679 pyrroline-5-carboxyla 97.3 0.0032 6.9E-08 58.2 11.6 70 19-96 2-73 (279)
203 PRK07666 fabG 3-ketoacyl-(acyl 97.3 0.0072 1.6E-07 53.9 13.6 117 20-140 7-145 (239)
204 PRK07832 short chain dehydroge 97.3 0.022 4.9E-07 51.9 17.1 118 21-140 1-140 (272)
205 PRK07576 short chain dehydroge 97.3 0.0045 9.7E-08 56.4 12.4 117 20-140 9-146 (264)
206 PRK12481 2-deoxy-D-gluconate 3 97.3 0.0051 1.1E-07 55.6 12.6 156 20-193 8-184 (251)
207 PRK06128 oxidoreductase; Provi 97.3 0.0089 1.9E-07 55.6 14.5 115 20-138 55-192 (300)
208 TIGR01832 kduD 2-deoxy-D-gluco 97.3 0.016 3.5E-07 51.9 15.7 116 19-138 4-140 (248)
209 PRK12827 short chain dehydroge 97.3 0.011 2.3E-07 52.8 14.5 117 19-139 5-148 (249)
210 PRK14982 acyl-ACP reductase; P 97.3 0.0021 4.5E-08 61.0 10.1 98 18-143 153-252 (340)
211 PRK06182 short chain dehydroge 97.2 0.0028 6.1E-08 57.9 10.8 113 20-138 3-133 (273)
212 PRK12936 3-ketoacyl-(acyl-carr 97.2 0.0046 9.9E-08 55.2 11.8 113 20-139 6-140 (245)
213 PRK08589 short chain dehydroge 97.2 0.026 5.6E-07 51.6 16.9 154 20-193 6-182 (272)
214 PRK06181 short chain dehydroge 97.2 0.0072 1.6E-07 54.7 12.9 115 21-139 2-138 (263)
215 PRK07024 short chain dehydroge 97.2 0.01 2.3E-07 53.6 14.0 35 20-56 2-36 (257)
216 PRK08085 gluconate 5-dehydroge 97.2 0.0071 1.5E-07 54.5 12.8 115 20-138 9-145 (254)
217 PRK06124 gluconate 5-dehydroge 97.2 0.0037 8.1E-08 56.4 10.9 118 19-140 10-149 (256)
218 PRK12939 short chain dehydroge 97.2 0.012 2.6E-07 52.6 14.0 116 19-138 6-143 (250)
219 PRK07856 short chain dehydroge 97.2 0.0061 1.3E-07 55.0 12.1 141 20-182 6-167 (252)
220 PF01118 Semialdhyde_dh: Semia 97.2 0.00071 1.5E-08 54.5 5.3 72 22-96 1-74 (121)
221 PLN02996 fatty acyl-CoA reduct 97.2 0.0063 1.4E-07 60.9 13.1 111 16-127 7-150 (491)
222 PRK12826 3-ketoacyl-(acyl-carr 97.2 0.0041 8.8E-08 55.6 10.7 115 19-138 5-142 (251)
223 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.0034 7.3E-08 58.1 10.2 65 21-96 1-65 (286)
224 PRK06841 short chain dehydroge 97.2 0.0051 1.1E-07 55.4 11.4 114 19-138 14-148 (255)
225 PRK06179 short chain dehydroge 97.2 0.011 2.3E-07 53.8 13.6 110 21-138 5-132 (270)
226 PRK12367 short chain dehydroge 97.2 0.013 2.9E-07 53.0 14.0 100 21-124 15-118 (245)
227 PTZ00142 6-phosphogluconate de 97.1 0.003 6.6E-08 62.7 10.4 98 21-141 2-105 (470)
228 PRK07890 short chain dehydroge 97.1 0.011 2.4E-07 53.2 13.4 116 19-138 4-141 (258)
229 PRK12746 short chain dehydroge 97.1 0.02 4.3E-07 51.5 15.0 115 20-138 6-147 (254)
230 PRK08507 prephenate dehydrogen 97.1 0.0037 8E-08 57.7 10.4 66 21-96 1-66 (275)
231 PRK15461 NADH-dependent gamma- 97.1 0.0025 5.5E-08 59.5 9.3 64 21-96 2-65 (296)
232 KOG2305 3-hydroxyacyl-CoA dehy 97.1 0.00077 1.7E-08 59.6 5.3 106 21-144 4-125 (313)
233 PRK06928 pyrroline-5-carboxyla 97.1 0.0059 1.3E-07 56.5 11.6 99 21-142 2-103 (277)
234 PRK12491 pyrroline-5-carboxyla 97.1 0.0024 5.3E-08 58.9 9.0 68 20-96 2-71 (272)
235 PF01488 Shikimate_DH: Shikima 97.1 0.0019 4.1E-08 53.1 7.5 75 18-99 10-86 (135)
236 PRK12480 D-lactate dehydrogena 97.1 0.0025 5.4E-08 60.5 9.3 62 19-96 145-206 (330)
237 TIGR01830 3oxo_ACP_reduc 3-oxo 97.1 0.0077 1.7E-07 53.4 12.0 113 23-139 1-136 (239)
238 PRK12935 acetoacetyl-CoA reduc 97.1 0.017 3.8E-07 51.6 14.4 115 20-138 6-143 (247)
239 PRK07478 short chain dehydroge 97.1 0.019 4.1E-07 51.7 14.6 156 20-193 6-185 (254)
240 TIGR03325 BphB_TodD cis-2,3-di 97.1 0.0048 1E-07 56.0 10.7 35 20-56 5-39 (262)
241 PRK06500 short chain dehydroge 97.1 0.0098 2.1E-07 53.2 12.6 111 20-137 6-136 (249)
242 PLN02780 ketoreductase/ oxidor 97.1 0.01 2.2E-07 56.1 13.1 115 21-138 54-193 (320)
243 PRK07985 oxidoreductase; Provi 97.1 0.03 6.5E-07 52.0 16.1 157 19-193 48-227 (294)
244 PRK05653 fabG 3-ketoacyl-(acyl 97.1 0.0037 8.1E-08 55.5 9.7 114 20-137 5-140 (246)
245 PRK07424 bifunctional sterol d 97.1 0.0078 1.7E-07 58.7 12.5 103 19-124 177-284 (406)
246 PRK07774 short chain dehydroge 97.1 0.008 1.7E-07 53.9 11.8 115 20-138 6-145 (250)
247 PRK06701 short chain dehydroge 97.1 0.015 3.2E-07 54.0 13.9 115 20-138 46-182 (290)
248 PRK12490 6-phosphogluconate de 97.1 0.0031 6.7E-08 59.0 9.3 64 21-96 1-67 (299)
249 PRK06138 short chain dehydroge 97.1 0.017 3.7E-07 51.7 13.9 75 20-99 5-92 (252)
250 TIGR02632 RhaD_aldol-ADH rhamn 97.1 0.013 2.8E-07 61.0 14.6 150 19-182 413-585 (676)
251 PRK05866 short chain dehydroge 97.1 0.014 3.1E-07 54.1 13.6 75 21-99 41-128 (293)
252 PRK05854 short chain dehydroge 97.0 0.011 2.4E-07 55.5 12.8 171 19-193 13-205 (313)
253 PRK07035 short chain dehydroge 97.0 0.0077 1.7E-07 54.2 11.3 115 20-138 8-145 (252)
254 PRK08251 short chain dehydroge 97.0 0.029 6.2E-07 50.2 15.0 78 21-100 3-93 (248)
255 PRK05993 short chain dehydroge 97.0 0.0048 1E-07 56.7 10.0 110 21-138 5-135 (277)
256 PRK06101 short chain dehydroge 97.0 0.013 2.9E-07 52.4 12.7 145 21-181 2-159 (240)
257 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.01 2.2E-07 51.0 11.4 33 22-56 1-33 (174)
258 TIGR01746 Thioester-redct thio 97.0 0.0083 1.8E-07 56.6 11.9 109 22-131 1-130 (367)
259 PRK12823 benD 1,6-dihydroxycyc 97.0 0.011 2.4E-07 53.4 12.2 155 18-193 6-183 (260)
260 PRK08339 short chain dehydroge 97.0 0.052 1.1E-06 49.4 16.7 115 21-139 9-145 (263)
261 COG0569 TrkA K+ transport syst 97.0 0.0034 7.4E-08 56.3 8.6 69 21-96 1-74 (225)
262 PRK08226 short chain dehydroge 97.0 0.015 3.2E-07 52.7 13.0 115 20-138 6-141 (263)
263 PRK12825 fabG 3-ketoacyl-(acyl 97.0 0.0068 1.5E-07 53.9 10.6 102 19-124 5-126 (249)
264 TIGR02356 adenyl_thiF thiazole 97.0 0.009 2E-07 52.6 11.1 75 20-96 21-119 (202)
265 PF02558 ApbA: Ketopantoate re 97.0 0.004 8.7E-08 51.8 8.5 118 23-167 1-125 (151)
266 PRK06949 short chain dehydroge 97.0 0.0096 2.1E-07 53.6 11.6 37 18-56 7-43 (258)
267 PRK07831 short chain dehydroge 97.0 0.071 1.5E-06 48.2 17.3 79 19-99 16-108 (262)
268 PRK05557 fabG 3-ketoacyl-(acyl 97.0 0.026 5.7E-07 50.1 14.2 115 20-138 5-142 (248)
269 PRK07825 short chain dehydroge 97.0 0.021 4.6E-07 52.1 13.8 112 20-139 5-138 (273)
270 PRK08263 short chain dehydroge 97.0 0.004 8.7E-08 57.0 9.0 111 21-137 4-135 (275)
271 PRK06197 short chain dehydroge 97.0 0.014 3E-07 54.4 12.7 171 19-194 15-207 (306)
272 PRK07097 gluconate 5-dehydroge 97.0 0.015 3.3E-07 52.8 12.8 155 20-193 10-187 (265)
273 PRK05650 short chain dehydroge 97.0 0.011 2.3E-07 54.0 11.7 113 21-138 1-136 (270)
274 PRK12742 oxidoreductase; Provi 97.0 0.012 2.5E-07 52.4 11.8 156 20-193 6-174 (237)
275 PLN02256 arogenate dehydrogena 97.0 0.0076 1.6E-07 56.6 10.9 65 19-96 35-100 (304)
276 PRK12743 oxidoreductase; Provi 97.0 0.051 1.1E-06 49.0 16.2 114 21-138 3-140 (256)
277 PRK08277 D-mannonate oxidoredu 97.0 0.024 5.3E-07 51.8 14.2 75 20-98 10-97 (278)
278 PRK09599 6-phosphogluconate de 97.0 0.0046 9.9E-08 57.9 9.3 64 21-96 1-67 (301)
279 PRK08644 thiamine biosynthesis 97.0 0.01 2.2E-07 52.7 11.1 35 20-56 28-62 (212)
280 PF03949 Malic_M: Malic enzyme 97.0 0.0023 4.9E-08 58.2 6.9 107 19-145 24-151 (255)
281 PRK06113 7-alpha-hydroxysteroi 96.9 0.019 4E-07 51.8 13.0 115 20-138 11-146 (255)
282 cd05312 NAD_bind_1_malic_enz N 96.9 0.0052 1.1E-07 56.6 9.2 101 20-141 25-144 (279)
283 COG2910 Putative NADH-flavin r 96.9 0.0064 1.4E-07 52.3 9.1 104 21-137 1-104 (211)
284 PRK06935 2-deoxy-D-gluconate 3 96.9 0.013 2.9E-07 52.9 12.0 116 20-139 15-151 (258)
285 PRK08642 fabG 3-ketoacyl-(acyl 96.9 0.014 3E-07 52.3 12.1 153 21-191 6-185 (253)
286 PRK09072 short chain dehydroge 96.9 0.032 6.9E-07 50.6 14.6 114 20-138 5-139 (263)
287 PRK08628 short chain dehydroge 96.9 0.034 7.4E-07 50.1 14.7 114 20-137 7-139 (258)
288 PRK08219 short chain dehydroge 96.9 0.0089 1.9E-07 52.6 10.6 75 20-99 3-82 (227)
289 PRK07060 short chain dehydroge 96.9 0.0091 2E-07 53.3 10.7 115 20-138 9-137 (245)
290 PRK07109 short chain dehydroge 96.9 0.026 5.7E-07 53.5 14.3 115 19-138 7-144 (334)
291 PRK07074 short chain dehydroge 96.9 0.01 2.3E-07 53.5 11.0 112 21-138 3-136 (257)
292 PRK12747 short chain dehydroge 96.9 0.054 1.2E-06 48.7 15.7 156 20-193 4-186 (252)
293 PRK07453 protochlorophyllide o 96.9 0.0081 1.8E-07 56.5 10.6 114 20-137 6-144 (322)
294 PF00899 ThiF: ThiF family; I 96.9 0.0061 1.3E-07 49.9 8.5 74 20-95 2-99 (135)
295 PRK08993 2-deoxy-D-gluconate 3 96.9 0.029 6.2E-07 50.6 13.8 115 20-138 10-145 (253)
296 PRK05708 2-dehydropantoate 2-r 96.9 0.018 3.8E-07 54.1 12.7 115 20-165 2-125 (305)
297 PRK08177 short chain dehydroge 96.9 0.021 4.6E-07 50.5 12.7 34 21-56 2-35 (225)
298 PF04321 RmlD_sub_bind: RmlD s 96.9 0.00074 1.6E-08 62.7 3.4 97 21-136 1-99 (286)
299 COG1893 ApbA Ketopantoate redu 96.9 0.004 8.7E-08 58.5 8.3 121 21-169 1-127 (307)
300 cd01065 NAD_bind_Shikimate_DH 96.9 0.0068 1.5E-07 50.5 8.9 74 18-99 17-92 (155)
301 TIGR02415 23BDH acetoin reduct 96.9 0.034 7.4E-07 49.9 14.2 112 22-137 2-136 (254)
302 PRK05855 short chain dehydroge 96.9 0.05 1.1E-06 54.9 16.7 118 18-139 313-453 (582)
303 TIGR01963 PHB_DH 3-hydroxybuty 96.9 0.017 3.7E-07 51.8 12.0 113 21-138 2-137 (255)
304 PRK09242 tropinone reductase; 96.9 0.058 1.3E-06 48.6 15.5 116 20-138 9-147 (257)
305 COG1712 Predicted dinucleotide 96.9 0.012 2.7E-07 52.1 10.4 96 21-141 1-97 (255)
306 PRK06196 oxidoreductase; Provi 96.9 0.013 2.8E-07 55.0 11.5 111 20-138 26-156 (315)
307 PRK05884 short chain dehydroge 96.9 0.0044 9.6E-08 55.1 8.0 34 21-56 1-34 (223)
308 PRK06198 short chain dehydroge 96.9 0.062 1.3E-06 48.4 15.7 116 19-138 5-144 (260)
309 PRK06139 short chain dehydroge 96.9 0.021 4.6E-07 54.1 13.1 114 20-138 7-143 (330)
310 PRK05565 fabG 3-ketoacyl-(acyl 96.9 0.013 2.7E-07 52.3 11.0 115 20-138 5-142 (247)
311 PRK06947 glucose-1-dehydrogena 96.9 0.052 1.1E-06 48.5 15.0 76 20-99 2-91 (248)
312 PTZ00431 pyrroline carboxylate 96.9 0.0075 1.6E-07 55.2 9.6 90 20-141 3-94 (260)
313 PLN02260 probable rhamnose bio 96.8 0.011 2.3E-07 61.5 11.8 90 18-129 378-474 (668)
314 PRK05693 short chain dehydroge 96.8 0.019 4.1E-07 52.5 12.2 34 21-56 2-35 (274)
315 PRK08936 glucose-1-dehydrogena 96.8 0.092 2E-06 47.5 16.7 156 20-193 7-186 (261)
316 COG0287 TyrA Prephenate dehydr 96.8 0.0053 1.2E-07 56.8 8.5 93 20-136 3-97 (279)
317 PRK06077 fabG 3-ketoacyl-(acyl 96.8 0.052 1.1E-06 48.5 14.9 147 20-182 6-173 (252)
318 PRK06057 short chain dehydroge 96.8 0.0063 1.4E-07 55.0 8.9 36 19-56 6-41 (255)
319 PRK05479 ketol-acid reductoiso 96.8 0.01 2.3E-07 56.1 10.5 67 18-96 15-81 (330)
320 PRK06523 short chain dehydroge 96.8 0.0036 7.9E-08 56.6 7.2 35 20-56 9-43 (260)
321 PRK08264 short chain dehydroge 96.8 0.016 3.4E-07 51.6 11.2 142 20-181 6-164 (238)
322 PRK06171 sorbitol-6-phosphate 96.8 0.012 2.5E-07 53.5 10.4 35 20-56 9-43 (266)
323 PRK05867 short chain dehydroge 96.8 0.023 5E-07 51.2 12.3 114 20-137 9-145 (253)
324 PRK09009 C factor cell-cell si 96.8 0.071 1.5E-06 47.3 15.3 72 21-100 1-79 (235)
325 PRK08416 7-alpha-hydroxysteroi 96.8 0.11 2.3E-06 47.1 16.7 154 19-190 7-190 (260)
326 PRK13243 glyoxylate reductase; 96.8 0.0074 1.6E-07 57.4 9.3 98 19-143 149-248 (333)
327 cd05213 NAD_bind_Glutamyl_tRNA 96.8 0.011 2.4E-07 55.7 10.3 100 19-144 177-280 (311)
328 PRK08818 prephenate dehydrogen 96.8 0.012 2.5E-07 56.7 10.6 56 20-96 4-59 (370)
329 cd01078 NAD_bind_H4MPT_DH NADP 96.8 0.0052 1.1E-07 53.6 7.6 76 19-97 27-106 (194)
330 PRK09186 flagellin modificatio 96.8 0.02 4.3E-07 51.5 11.7 35 20-56 4-38 (256)
331 PRK07023 short chain dehydroge 96.8 0.0078 1.7E-07 53.9 8.9 35 20-56 1-35 (243)
332 PLN02725 GDP-4-keto-6-deoxyman 96.8 0.0038 8.3E-08 57.8 7.1 93 24-134 1-98 (306)
333 PRK06398 aldose dehydrogenase; 96.8 0.02 4.4E-07 51.9 11.6 148 20-193 6-171 (258)
334 TIGR02685 pter_reduc_Leis pter 96.8 0.073 1.6E-06 48.4 15.4 32 22-55 3-34 (267)
335 cd01483 E1_enzyme_family Super 96.8 0.02 4.3E-07 47.3 10.6 33 22-56 1-33 (143)
336 PLN00016 RNA-binding protein; 96.8 0.011 2.4E-07 57.0 10.4 36 19-56 51-90 (378)
337 PRK12744 short chain dehydroge 96.7 0.068 1.5E-06 48.2 15.0 155 20-193 8-187 (257)
338 PRK06200 2,3-dihydroxy-2,3-dih 96.7 0.011 2.4E-07 53.7 9.7 36 19-56 5-40 (263)
339 PRK07904 short chain dehydroge 96.7 0.026 5.6E-07 51.2 12.2 115 20-138 8-146 (253)
340 PRK15059 tartronate semialdehy 96.7 0.007 1.5E-07 56.4 8.6 63 21-96 1-63 (292)
341 PRK06123 short chain dehydroge 96.7 0.074 1.6E-06 47.5 15.0 157 21-193 3-185 (248)
342 PRK08063 enoyl-(acyl carrier p 96.7 0.055 1.2E-06 48.4 14.1 114 21-138 5-141 (250)
343 TIGR02853 spore_dpaA dipicolin 96.7 0.0063 1.4E-07 56.6 8.1 97 19-143 150-247 (287)
344 PLN02712 arogenate dehydrogena 96.7 0.012 2.6E-07 61.1 10.7 66 18-96 50-116 (667)
345 PRK08324 short chain dehydroge 96.7 0.038 8.2E-07 57.7 14.6 114 20-138 422-558 (681)
346 PRK07454 short chain dehydroge 96.7 0.017 3.7E-07 51.5 10.6 114 20-138 6-142 (241)
347 PRK12475 thiamine/molybdopteri 96.7 0.015 3.3E-07 55.3 10.7 75 20-96 24-124 (338)
348 PF05368 NmrA: NmrA-like famil 96.7 0.0062 1.3E-07 54.4 7.7 92 23-128 1-94 (233)
349 PRK09134 short chain dehydroge 96.7 0.021 4.4E-07 51.7 11.2 114 20-137 9-145 (258)
350 PRK15469 ghrA bifunctional gly 96.7 0.02 4.4E-07 53.9 11.2 97 19-142 135-233 (312)
351 PRK07062 short chain dehydroge 96.7 0.057 1.2E-06 48.9 14.0 116 20-138 8-146 (265)
352 COG1090 Predicted nucleoside-d 96.7 0.011 2.4E-07 54.0 8.9 98 23-131 1-103 (297)
353 PRK06476 pyrroline-5-carboxyla 96.7 0.012 2.6E-07 53.7 9.4 68 21-96 1-69 (258)
354 PRK14194 bifunctional 5,10-met 96.6 0.011 2.4E-07 55.1 9.1 56 19-99 158-213 (301)
355 cd00762 NAD_bind_malic_enz NAD 96.6 0.0078 1.7E-07 54.6 7.9 121 20-165 25-166 (254)
356 PRK07792 fabG 3-ketoacyl-(acyl 96.6 0.025 5.4E-07 52.9 11.6 77 20-100 12-101 (306)
357 PRK07574 formate dehydrogenase 96.6 0.016 3.4E-07 56.2 10.4 100 19-143 191-292 (385)
358 PRK13302 putative L-aspartate 96.6 0.017 3.7E-07 53.3 10.2 71 17-97 3-76 (271)
359 KOG1205 Predicted dehydrogenas 96.6 0.024 5.2E-07 52.4 11.0 121 20-144 12-156 (282)
360 cd05311 NAD_bind_2_malic_enz N 96.6 0.04 8.7E-07 49.4 12.3 101 18-142 23-133 (226)
361 TIGR00873 gnd 6-phosphoglucona 96.6 0.0095 2.1E-07 59.2 8.9 97 22-138 1-99 (467)
362 PRK07984 enoyl-(acyl carrier p 96.6 0.046 1E-06 49.9 12.9 157 20-193 6-187 (262)
363 PRK08703 short chain dehydroge 96.6 0.11 2.4E-06 46.2 15.1 36 19-56 5-40 (239)
364 PRK07688 thiamine/molybdopteri 96.6 0.025 5.5E-07 53.9 11.4 35 20-56 24-58 (339)
365 PRK05599 hypothetical protein; 96.6 0.2 4.3E-06 45.1 16.8 153 21-191 1-176 (246)
366 PRK12824 acetoacetyl-CoA reduc 96.6 0.041 8.8E-07 48.9 12.2 114 21-139 3-140 (245)
367 PRK08220 2,3-dihydroxybenzoate 96.6 0.032 6.8E-07 50.0 11.5 35 20-56 8-42 (252)
368 COG1091 RfbD dTDP-4-dehydrorha 96.6 0.011 2.3E-07 54.6 8.4 148 21-202 1-159 (281)
369 PRK06463 fabG 3-ketoacyl-(acyl 96.6 0.034 7.4E-07 50.1 11.7 114 20-138 7-138 (255)
370 TIGR03649 ergot_EASG ergot alk 96.6 0.013 2.7E-07 54.0 9.0 96 22-137 1-104 (285)
371 PRK08306 dipicolinate synthase 96.6 0.017 3.8E-07 53.9 9.9 69 17-96 149-218 (296)
372 PRK14806 bifunctional cyclohex 96.6 0.019 4.1E-07 60.4 11.3 92 21-137 4-97 (735)
373 PRK07677 short chain dehydroge 96.5 0.095 2.1E-06 47.1 14.3 114 21-138 2-138 (252)
374 PRK06483 dihydromonapterin red 96.5 0.063 1.4E-06 47.7 12.9 35 20-56 2-36 (236)
375 COG0345 ProC Pyrroline-5-carbo 96.5 0.024 5.1E-07 52.1 10.0 96 20-140 1-98 (266)
376 PRK06550 fabG 3-ketoacyl-(acyl 96.5 0.19 4.1E-06 44.5 15.7 108 20-138 5-127 (235)
377 PRK05872 short chain dehydroge 96.5 0.11 2.3E-06 48.2 14.6 114 20-138 9-143 (296)
378 PRK08217 fabG 3-ketoacyl-(acyl 96.5 0.024 5.3E-07 50.6 10.0 35 20-56 5-39 (253)
379 PRK07577 short chain dehydroge 96.4 0.026 5.7E-07 50.0 10.0 35 20-56 3-37 (234)
380 PRK06079 enoyl-(acyl carrier p 96.4 0.038 8.2E-07 50.0 11.2 35 20-56 7-43 (252)
381 TIGR01831 fabG_rel 3-oxoacyl-( 96.4 0.035 7.6E-07 49.4 10.8 114 23-140 1-138 (239)
382 TIGR00465 ilvC ketol-acid redu 96.4 0.024 5.3E-07 53.4 10.1 65 20-96 3-67 (314)
383 PF01113 DapB_N: Dihydrodipico 96.4 0.0096 2.1E-07 48.2 6.4 71 21-95 1-74 (124)
384 PRK08605 D-lactate dehydrogena 96.4 0.018 3.8E-07 54.8 9.2 64 19-96 145-208 (332)
385 PLN03139 formate dehydrogenase 96.4 0.023 4.9E-07 55.1 10.0 100 19-143 198-299 (386)
386 PRK06114 short chain dehydroge 96.4 0.036 7.8E-07 50.0 10.9 114 20-138 8-145 (254)
387 PRK06505 enoyl-(acyl carrier p 96.4 0.22 4.7E-06 45.6 16.2 153 20-192 7-186 (271)
388 cd00757 ThiF_MoeB_HesA_family 96.4 0.03 6.5E-07 50.2 10.2 34 21-56 22-55 (228)
389 PRK07775 short chain dehydroge 96.4 0.19 4.1E-06 45.9 15.8 113 21-138 11-146 (274)
390 PRK05786 fabG 3-ketoacyl-(acyl 96.4 0.028 6.1E-07 49.9 9.9 34 21-56 6-39 (238)
391 PRK08291 ectoine utilization p 96.4 0.026 5.5E-07 53.6 10.1 72 20-96 132-205 (330)
392 TIGR02355 moeB molybdopterin s 96.4 0.028 6.2E-07 50.9 10.0 35 20-56 24-58 (240)
393 PF02826 2-Hacid_dh_C: D-isome 96.4 0.027 5.8E-07 48.5 9.4 92 19-137 35-127 (178)
394 KOG1371 UDP-glucose 4-epimeras 96.4 0.044 9.5E-07 51.2 11.1 105 20-128 2-119 (343)
395 PRK06603 enoyl-(acyl carrier p 96.4 0.25 5.4E-06 44.8 16.2 159 19-193 7-188 (260)
396 PRK12938 acetyacetyl-CoA reduc 96.4 0.095 2.1E-06 46.8 13.2 113 21-138 4-140 (246)
397 PRK05690 molybdopterin biosynt 96.4 0.046 9.9E-07 49.7 11.1 35 20-56 32-66 (245)
398 PRK08415 enoyl-(acyl carrier p 96.3 0.21 4.6E-06 45.9 15.7 115 21-138 6-144 (274)
399 PRK13304 L-aspartate dehydroge 96.3 0.033 7.1E-07 51.2 10.2 68 20-96 1-69 (265)
400 PRK06953 short chain dehydroge 96.3 0.059 1.3E-06 47.5 11.5 114 21-139 2-131 (222)
401 PLN02928 oxidoreductase family 96.3 0.019 4E-07 55.0 8.7 103 19-137 158-262 (347)
402 PLN02968 Probable N-acetyl-gam 96.3 0.022 4.8E-07 55.1 9.3 76 18-96 36-112 (381)
403 TIGR02371 ala_DH_arch alanine 96.3 0.027 5.8E-07 53.4 9.6 71 20-96 128-200 (325)
404 PF03435 Saccharop_dh: Sacchar 96.3 0.0033 7.1E-08 60.9 3.5 71 23-98 1-77 (386)
405 PLN02350 phosphogluconate dehy 96.3 0.027 5.8E-07 56.3 9.8 99 19-140 5-110 (493)
406 cd01485 E1-1_like Ubiquitin ac 96.3 0.05 1.1E-06 47.8 10.6 34 21-56 20-53 (198)
407 PRK07201 short chain dehydroge 96.2 0.074 1.6E-06 54.9 13.4 114 20-138 371-509 (657)
408 PLN02712 arogenate dehydrogena 96.2 0.03 6.4E-07 58.2 10.4 65 19-96 368-433 (667)
409 PRK06484 short chain dehydroge 96.2 0.034 7.4E-07 55.8 10.6 156 20-193 269-442 (520)
410 TIGR01829 AcAcCoA_reduct aceto 96.2 0.14 3.1E-06 45.3 13.6 113 22-139 2-138 (242)
411 TIGR01724 hmd_rel H2-forming N 96.2 0.049 1.1E-06 51.1 10.6 66 21-96 1-89 (341)
412 PLN02503 fatty acyl-CoA reduct 96.2 0.056 1.2E-06 55.4 12.0 111 17-128 116-258 (605)
413 PRK00048 dihydrodipicolinate r 96.2 0.3 6.4E-06 44.7 15.7 68 20-96 1-68 (257)
414 PRK06125 short chain dehydroge 96.2 0.21 4.6E-06 45.0 14.8 115 20-138 7-140 (259)
415 PF07991 IlvN: Acetohydroxy ac 96.2 0.084 1.8E-06 44.7 10.9 66 19-96 3-68 (165)
416 PRK08223 hypothetical protein; 96.2 0.028 6E-07 52.1 8.8 73 21-95 28-124 (287)
417 TIGR01692 HIBADH 3-hydroxyisob 96.2 0.022 4.8E-07 52.9 8.2 60 25-96 1-60 (288)
418 PRK07578 short chain dehydroge 96.2 0.098 2.1E-06 45.2 11.9 101 21-137 1-111 (199)
419 PRK09424 pntA NAD(P) transhydr 96.1 0.072 1.6E-06 53.4 12.1 110 13-139 158-287 (509)
420 KOG2711 Glycerol-3-phosphate d 96.1 0.071 1.5E-06 50.1 11.1 124 16-160 17-167 (372)
421 cd00401 AdoHcyase S-adenosyl-L 96.1 0.038 8.3E-07 53.9 9.9 90 19-139 201-291 (413)
422 PRK08690 enoyl-(acyl carrier p 96.1 0.69 1.5E-05 41.9 17.8 78 19-99 5-95 (261)
423 KOG1201 Hydroxysteroid 17-beta 96.1 0.17 3.8E-06 46.8 13.5 116 17-138 35-173 (300)
424 PRK08618 ornithine cyclodeamin 96.1 0.037 8E-07 52.4 9.5 72 20-96 127-200 (325)
425 PRK06718 precorrin-2 dehydroge 96.1 0.11 2.5E-06 45.6 12.0 69 20-96 10-78 (202)
426 PRK09496 trkA potassium transp 96.1 0.025 5.4E-07 55.7 8.7 71 21-96 1-73 (453)
427 PF02423 OCD_Mu_crystall: Orni 96.1 0.026 5.7E-07 53.2 8.3 69 21-95 129-199 (313)
428 TIGR01850 argC N-acetyl-gamma- 96.1 0.04 8.6E-07 52.7 9.6 73 21-96 1-76 (346)
429 PRK06484 short chain dehydroge 96.1 0.05 1.1E-06 54.6 10.7 34 21-56 6-39 (520)
430 PRK08303 short chain dehydroge 96.0 0.2 4.4E-06 46.8 14.2 34 20-55 8-41 (305)
431 PRK03659 glutathione-regulated 96.0 0.035 7.6E-07 57.1 9.7 137 20-188 400-541 (601)
432 PRK08261 fabG 3-ketoacyl-(acyl 96.0 0.085 1.8E-06 52.0 12.1 117 20-138 210-343 (450)
433 PF02882 THF_DHG_CYH_C: Tetrah 96.0 0.034 7.5E-07 47.1 7.9 56 19-99 35-90 (160)
434 PRK06940 short chain dehydroge 96.0 0.16 3.4E-06 46.6 13.0 110 22-138 4-126 (275)
435 PRK08862 short chain dehydroge 96.0 0.28 6.1E-06 43.7 14.2 115 20-138 5-144 (227)
436 PRK08159 enoyl-(acyl carrier p 96.0 0.47 1E-05 43.5 16.0 162 16-193 6-190 (272)
437 PRK06719 precorrin-2 dehydroge 96.0 0.13 2.7E-06 43.5 11.1 66 20-96 13-78 (157)
438 PRK07340 ornithine cyclodeamin 95.9 0.052 1.1E-06 50.9 9.6 70 20-96 125-196 (304)
439 cd01080 NAD_bind_m-THF_DH_Cycl 95.9 0.028 6.1E-07 48.0 7.1 56 18-99 42-98 (168)
440 TIGR01470 cysG_Nterm siroheme 95.9 0.14 3E-06 45.2 11.8 69 20-96 9-77 (205)
441 PRK05600 thiamine biosynthesis 95.9 0.066 1.4E-06 51.7 10.2 35 20-56 41-75 (370)
442 TIGR01035 hemA glutamyl-tRNA r 95.9 0.031 6.8E-07 54.8 8.2 104 18-144 178-284 (417)
443 PRK06407 ornithine cyclodeamin 95.9 0.039 8.4E-07 51.7 8.4 71 20-95 117-189 (301)
444 PRK08017 oxidoreductase; Provi 95.9 0.06 1.3E-06 48.3 9.4 34 21-56 3-36 (256)
445 TIGR02992 ectoine_eutC ectoine 95.8 0.058 1.3E-06 51.1 9.6 71 21-96 130-202 (326)
446 cd01492 Aos1_SUMO Ubiquitin ac 95.8 0.12 2.5E-06 45.4 10.8 34 21-56 22-55 (197)
447 PRK08762 molybdopterin biosynt 95.8 0.089 1.9E-06 50.9 11.0 34 20-55 135-168 (376)
448 PRK05597 molybdopterin biosynt 95.8 0.088 1.9E-06 50.5 10.8 34 21-56 29-62 (355)
449 TIGR01745 asd_gamma aspartate- 95.8 0.034 7.5E-07 53.3 7.9 71 21-97 1-73 (366)
450 PRK07533 enoyl-(acyl carrier p 95.8 0.51 1.1E-05 42.7 15.5 158 20-193 10-190 (258)
451 PTZ00075 Adenosylhomocysteinas 95.8 0.043 9.3E-07 54.3 8.7 90 19-139 253-343 (476)
452 PRK08594 enoyl-(acyl carrier p 95.8 0.67 1.5E-05 41.9 16.1 157 21-193 8-189 (257)
453 cd01079 NAD_bind_m-THF_DH NAD 95.8 0.03 6.5E-07 48.8 6.7 75 19-99 61-137 (197)
454 PRK07589 ornithine cyclodeamin 95.8 0.059 1.3E-06 51.5 9.3 71 20-96 129-201 (346)
455 PRK05476 S-adenosyl-L-homocyst 95.8 0.093 2E-06 51.5 10.8 92 19-140 211-302 (425)
456 PRK15116 sulfur acceptor prote 95.8 0.15 3.1E-06 47.0 11.5 35 20-56 30-64 (268)
457 PLN02383 aspartate semialdehyd 95.7 0.018 3.9E-07 55.0 5.7 71 20-97 7-78 (344)
458 COG0002 ArgC Acetylglutamate s 95.7 0.021 4.5E-07 53.9 5.9 74 19-95 1-77 (349)
459 TIGR00518 alaDH alanine dehydr 95.7 0.037 8.1E-07 53.4 7.9 81 13-99 160-241 (370)
460 PRK06141 ornithine cyclodeamin 95.7 0.049 1.1E-06 51.3 8.6 71 20-96 125-197 (314)
461 PRK14106 murD UDP-N-acetylmura 95.7 0.069 1.5E-06 52.6 10.0 123 20-153 5-132 (450)
462 TIGR01500 sepiapter_red sepiap 95.7 0.28 6E-06 44.3 13.2 42 22-65 2-49 (256)
463 TIGR00936 ahcY adenosylhomocys 95.7 0.062 1.3E-06 52.4 9.3 67 18-97 193-259 (406)
464 PRK07791 short chain dehydroge 95.7 0.37 8.1E-06 44.4 14.3 34 20-55 6-39 (286)
465 PRK07878 molybdopterin biosynt 95.7 0.098 2.1E-06 50.9 10.7 35 20-56 42-76 (392)
466 PRK14874 aspartate-semialdehyd 95.7 0.029 6.3E-07 53.4 6.7 71 20-97 1-72 (334)
467 TIGR01327 PGDH D-3-phosphoglyc 95.6 0.043 9.3E-07 55.5 8.2 64 20-96 138-201 (525)
468 cd01491 Ube1_repeat1 Ubiquitin 95.6 0.13 2.8E-06 47.8 10.8 74 20-96 19-113 (286)
469 PRK13581 D-3-phosphoglycerate 95.6 0.042 9.2E-07 55.5 8.2 63 20-96 140-202 (526)
470 PLN02494 adenosylhomocysteinas 95.6 0.069 1.5E-06 52.8 9.3 90 20-140 254-344 (477)
471 TIGR01289 LPOR light-dependent 95.6 0.39 8.5E-06 45.0 14.2 115 20-138 3-143 (314)
472 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.057 1.2E-06 44.7 7.5 56 19-99 27-82 (140)
473 PRK13529 malate dehydrogenase; 95.6 0.087 1.9E-06 53.0 10.0 105 20-141 295-421 (563)
474 TIGR03736 PRTRC_ThiF PRTRC sys 95.6 0.17 3.6E-06 46.0 11.0 37 19-56 10-55 (244)
475 PRK06598 aspartate-semialdehyd 95.6 0.075 1.6E-06 51.1 9.3 71 21-97 2-74 (369)
476 PRK00045 hemA glutamyl-tRNA re 95.6 0.059 1.3E-06 53.0 8.8 105 18-144 180-287 (423)
477 PRK03562 glutathione-regulated 95.6 0.059 1.3E-06 55.6 9.1 137 20-188 400-541 (621)
478 PRK06728 aspartate-semialdehyd 95.6 0.024 5.3E-07 54.0 5.8 72 19-97 4-77 (347)
479 PF13241 NAD_binding_7: Putati 95.5 0.1 2.2E-06 40.6 8.4 62 20-96 7-68 (103)
480 PRK06823 ornithine cyclodeamin 95.5 0.071 1.5E-06 50.3 8.7 71 20-96 128-200 (315)
481 PRK05671 aspartate-semialdehyd 95.5 0.03 6.4E-07 53.3 6.2 71 20-97 4-75 (336)
482 COG0136 Asd Aspartate-semialde 95.5 0.059 1.3E-06 50.8 8.0 73 20-97 1-75 (334)
483 PLN03129 NADP-dependent malic 95.5 0.092 2E-06 53.0 9.6 98 20-140 321-439 (581)
484 PRK07411 hypothetical protein; 95.4 0.15 3.1E-06 49.7 10.7 75 20-96 38-136 (390)
485 PRK06997 enoyl-(acyl carrier p 95.4 0.93 2E-05 41.1 15.5 34 20-55 6-41 (260)
486 PRK12557 H(2)-dependent methyl 95.4 0.16 3.5E-06 48.5 10.8 66 21-96 1-89 (342)
487 PRK14192 bifunctional 5,10-met 95.4 0.049 1.1E-06 50.6 7.1 56 19-99 158-213 (283)
488 PRK06199 ornithine cyclodeamin 95.4 0.11 2.3E-06 50.4 9.6 73 20-96 155-231 (379)
489 PTZ00317 NADP-dependent malic 95.4 0.1 2.2E-06 52.4 9.6 103 20-140 297-419 (559)
490 COG0702 Predicted nucleoside-d 95.4 0.041 9E-07 49.8 6.5 74 21-99 1-74 (275)
491 KOG0409 Predicted dehydrogenas 95.4 0.11 2.5E-06 48.0 9.1 99 21-133 36-151 (327)
492 cd00755 YgdL_like Family of ac 95.3 0.17 3.7E-06 45.6 10.2 34 21-56 12-45 (231)
493 PRK07877 hypothetical protein; 95.3 0.1 2.2E-06 54.5 9.9 74 21-96 108-204 (722)
494 PRK06436 glycerate dehydrogena 95.3 0.087 1.9E-06 49.4 8.7 95 20-144 122-218 (303)
495 PF00106 adh_short: short chai 95.3 0.18 3.9E-06 42.0 9.9 115 22-140 2-137 (167)
496 COG1064 AdhP Zn-dependent alco 95.3 0.34 7.3E-06 46.0 12.5 93 21-140 168-262 (339)
497 PRK07370 enoyl-(acyl carrier p 95.3 0.35 7.6E-06 43.8 12.4 154 20-193 6-189 (258)
498 PRK09730 putative NAD(P)-bindi 95.3 0.27 5.8E-06 43.7 11.5 33 22-56 3-36 (247)
499 PRK06046 alanine dehydrogenase 95.3 0.11 2.4E-06 49.2 9.3 71 20-96 129-201 (326)
500 PRK14027 quinate/shikimate deh 95.3 0.099 2.2E-06 48.5 8.7 75 19-96 126-202 (283)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.4e-68 Score=494.72 Aligned_cols=309 Identities=68% Similarity=1.075 Sum_probs=281.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
|||+||||+|+||+++|+.|+.+++..||+|+|++.++|+++||.|+.....++...+++|++++++|||+||+|+|.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999999899999999999999998999999998678999999999754566643234466799999999999999999
Q ss_pred CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHH
Q 019993 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180 (332)
Q Consensus 101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~ 180 (332)
++|++|+|++..|.++++++++.|.+++|++|+|++|||+|++|+++++++++.+++|++||||+|.||++|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999889999999999999
Q ss_pred hCCCCCCCceeEEEec-CCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHH
Q 019993 181 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259 (332)
Q Consensus 181 l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~ 259 (332)
+|+++++|+++||||| |+ +++|+||.+.+...+++++++++.+++++++++|++.|.|||+++||+|.++++++++|+
T Consensus 161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl 239 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL 239 (310)
T ss_pred hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999 88 999999999875456666689999999999999999766789999999999999999999
Q ss_pred cCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019993 260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFS 330 (332)
Q Consensus 260 ~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~ 330 (332)
+|+++++.++++++++|+-.+++|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|+
T Consensus 240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 88654445777787776535789999999999999999998525999999999999999999999999874
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=3.2e-68 Score=495.76 Aligned_cols=310 Identities=59% Similarity=0.952 Sum_probs=281.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 101 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~ 101 (332)
||+||||+|+||+++|+.|+..++..||+|+|++++.|+++||.|......+..+.+.++++++++|||+||+++|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999999999999999999999889999999998889999999987434555432223567999999999999999999
Q ss_pred CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHh
Q 019993 102 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181 (332)
Q Consensus 102 ~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l 181 (332)
+|++|+|++..|.++++++++.|.+++|++++|++|||+|++++++++++++.+|+|++||||+|.||++|+++++|+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888999999999999999998899999999999999
Q ss_pred CCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHHcC
Q 019993 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261 (332)
Q Consensus 182 ~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~ 261 (332)
+++|++|+++||||||+.+++|+||.++....+++++++++.+++++++++|++.|.|||+++||+|.++++++++|+++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999986589999999986444666668999999999999999976678999999999999999999965
Q ss_pred CCCCCcEEEeeEEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 019993 262 LRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 331 (332)
Q Consensus 262 ~~~~~~v~~~~~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~ 331 (332)
..+++.++++++++|+| ++++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|++
T Consensus 241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334688988999998 78999999999999999999985489999999999999999999999999986
No 3
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=7e-66 Score=481.76 Aligned_cols=315 Identities=79% Similarity=1.208 Sum_probs=286.5
Q ss_pred hhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 019993 10 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM 89 (332)
Q Consensus 10 ~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a 89 (332)
.-||++++..+.||+||||+|+||+++++.|+.+++..||+|+|+++++++++||.|+.....+..+.+++|++++++||
T Consensus 8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence 46999999999999999999999999999999999988999999998889999999987655666544567888999999
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhh
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD 169 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld 169 (332)
|+||+++|.|+++|++|.|++..|.++++++++.+.+++|+++++++|||+|.+++++++++++.+++|++|+||+|.||
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD 167 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD 167 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence 99999999999999999999999999999999999999999999999999997777667777899999999999998899
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHH
Q 019993 170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 249 (332)
Q Consensus 170 ~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~ 249 (332)
++|+++++|+++|+++.+|+++|+|+||+.+++|+||.+.+...+++++++++.+++++++++|++.|.|||+++||+|.
T Consensus 168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~ 247 (323)
T PLN00106 168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247 (323)
T ss_pred HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence 99999999999999999999999999965599999999976434666678999999999999999975568999999999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 019993 250 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ 324 (332)
Q Consensus 250 a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~ 324 (332)
++++++++|++|+++++.++++++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus 248 a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 248 AAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999998765557999988888774349999999999999999999559999999999999999998875
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.1e-66 Score=477.40 Aligned_cols=297 Identities=38% Similarity=0.581 Sum_probs=270.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCC--eEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||+|||| |+||+++|+.|+..++..|++|+|+++ ++|.++||.|+.+.. ..+.. .+.+ +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence 59999999 999999999998888888999999997 799999999997532 34432 2245 58899999999999
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~ 175 (332)
|.||+|||+|+|++..|.++++++++++.++|||++++++|||+|++||++ ++.+++|++||||. |.||++||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875 78899999999999 9999999999
Q ss_pred HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C-------CCHHHHHHHHHHHhccchhhhhcccCCCchhhHH
Q 019993 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247 (332)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~ 247 (332)
++|++++++|++|+++|+|+||+ ++||+||++++.+ + .++++++++.++|++++++|+++| |.| +.||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999999 9999999999854 1 234567899999999999999976 444 99999
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019993 248 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325 (332)
Q Consensus 248 a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~ 325 (332)
|.++++++++|++|++ +++|++ +++|+| ++++|||+|+++|++|+++++++ +|+++|+++|+.|++.|++.++.
T Consensus 231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~ 306 (313)
T COG0039 231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL 306 (313)
T ss_pred HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 588886 899999 88999999999999999999996 99999999999999999999999
Q ss_pred hhhhhc
Q 019993 326 GISFSK 331 (332)
Q Consensus 326 ~~~~~~ 331 (332)
+.++++
T Consensus 307 ~~~~~~ 312 (313)
T COG0039 307 VKELVL 312 (313)
T ss_pred HHHhhc
Confidence 988764
No 5
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-63 Score=463.16 Aligned_cols=317 Identities=61% Similarity=0.956 Sum_probs=281.7
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 019993 14 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI 93 (332)
Q Consensus 14 ~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi 93 (332)
||.--++.||+||||+|.||+++++.|+..+...+|+|+|++.+.++++||.|......+..+....+++++++|||+||
T Consensus 2 ~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVV 81 (321)
T PTZ00325 2 RPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVL 81 (321)
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEE
Confidence 34445677999999989999999999998888889999999558999999999865444443322234468999999999
Q ss_pred EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHH
Q 019993 94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA 173 (332)
Q Consensus 94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~ 173 (332)
+++|.|++++++|.+++..|+++++++++.|.+++|+++|+++|||+|++++++.+.+++.+++|++||||++.|||+||
T Consensus 82 itaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~ 161 (321)
T PTZ00325 82 ICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRA 161 (321)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988644456889999999999977999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHH
Q 019993 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 253 (332)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ 253 (332)
++.+|+++|++|++|+++||||||+.+++|+||.+. .++++++++++.+++++++++|++.|.|||+++||+|.++++
T Consensus 162 r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~ 239 (321)
T PTZ00325 162 RKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAE 239 (321)
T ss_pred HHHHHHHhCcChhheEEEEEeecCCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Confidence 999999999999999999999999845999999993 356677799999999999999999765679999999999999
Q ss_pred HHHHHHcCCCCCCcEEEeeEEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 019993 254 FADACLRGLRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332 (332)
Q Consensus 254 ii~ai~~~~~~~~~v~~~~~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~~ 332 (332)
++++|++|..+++.++++++++|+| .+++|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|.++
T Consensus 240 i~~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~ 319 (321)
T PTZ00325 240 WSTSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK 319 (321)
T ss_pred HHHHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998743344688888899999 689999999999999999999833999999999999999999999999999875
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.7e-64 Score=465.76 Aligned_cols=286 Identities=27% Similarity=0.392 Sum_probs=259.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC---CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
||+|||| |+||+++|+.|+.+++.+||+|+|+++ ++|+++||.|.... ..++.. .+| +++++|||+||+|+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~--~~~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR--AGD-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE--ECC-HHHhCCCCEEEECC
Confidence 7999999 999999999999999999999999988 78999999997532 245544 246 58899999999999
Q ss_pred CCCCCCCCC--hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 019993 97 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 173 (332)
Q Consensus 97 g~~~~~g~~--r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~ 173 (332)
|.|++||++ |+|++..|+++++++++.+.+++|++++|++|||+|++||++ ++.+|||++||||+ |.||++|+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999998765 78899999999999 99999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C---------CCHHHHHHHHHHHhccchhhhhcccCCCch
Q 019993 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243 (332)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~ 243 (332)
++++|+++|++|++|+++|||+||+ +++|+||++++++ + ..+..++++.+++++++++|++ +||++
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence 9999999999999999999999999 9999999998753 1 1222478999999999999999 56899
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 019993 244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321 (332)
Q Consensus 244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~ 321 (332)
+|++|.++++++++|++|++ .+++++ +++|+| ++++++|+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus 229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~ 304 (307)
T cd05290 229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE 304 (307)
T ss_pred hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 588875 789999 68999999999999999999996 9999999999999999997
Q ss_pred HH
Q 019993 322 SI 323 (332)
Q Consensus 322 ~~ 323 (332)
.+
T Consensus 305 ~~ 306 (307)
T cd05290 305 TI 306 (307)
T ss_pred Hh
Confidence 65
No 7
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-62 Score=458.05 Aligned_cols=310 Identities=56% Similarity=0.880 Sum_probs=277.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
|||+||||+|.+|+++++.|+. .+...+++|+|+++ ..++++|+.|......+..+ ..+|++++++|+|+||+++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 6999999999999999998865 56677999999987 67788999885322344432 135767999999999999999
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHH
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA 178 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la 178 (332)
+++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++++.+++++|+|++||||+|.||+.|+++.+|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888899999999999998899999999999
Q ss_pred HHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHH
Q 019993 179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 258 (332)
Q Consensus 179 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai 258 (332)
+++|++|++|+++||||||+.+++|+||++ -+.++++++++++.+++++++++|++.|.|+|+++||+|.++++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999666899999999 3345777779999999999999999976677999999999999999999
Q ss_pred HcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 019993 259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332 (332)
Q Consensus 259 ~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~~ 332 (332)
++++++++.++++++++|+-.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.+++|++|+++
T Consensus 239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 98865555688887777753468999999999999999999955999999999999999999999999999975
No 8
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.1e-62 Score=461.07 Aligned_cols=295 Identities=27% Similarity=0.397 Sum_probs=262.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~ 87 (332)
+|.||+||||+|+||+++++.|+..++.+ ||+|+|+++ ++|+++||.|..+. ...... +.+ +++++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence 57899999988999999999999999888 999999964 68999999999731 223322 334 69999
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 165 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~ 165 (332)
|||+||+|||.|+++|++|.|++..|+++++++++.|.+++| ++++|++|||+|++||++ ++.+ |||++||||+
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~ 154 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM 154 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence 999999999999999999999999999999999999999998 999999999999999875 6778 9999999999
Q ss_pred ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhhcc
Q 019993 166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK 237 (332)
Q Consensus 166 ~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~ 237 (332)
|.||+.||++++|+++|++|++|+ .+||||||+ +++|+||++++.+ + ++++. +++|.+++++++++|++
T Consensus 155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-- 231 (323)
T TIGR01759 155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE-- 231 (323)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh--
Confidence 999999999999999999999995 569999999 9999999998753 1 33333 67999999999999999
Q ss_pred cCCCchhh-HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeC-CC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHH
Q 019993 238 AGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIG 311 (332)
Q Consensus 238 ~~kg~~~~-s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~ 311 (332)
+||+++| ++|.++++++++|++|++. +.+++++ +++| +| |+++|||+||++|++|++++++ + +|+++|+++
T Consensus 232 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~ 308 (323)
T TIGR01759 232 -ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGK 308 (323)
T ss_pred -ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHH
Confidence 5688999 4779999999999999832 2588887 7899 88 4899999999999999999998 6 999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 019993 312 LEKAKKELAGSIQKG 326 (332)
Q Consensus 312 l~~sa~~l~~~~~~~ 326 (332)
|+.|++.|+++++++
T Consensus 309 l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 309 LDATEDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998764
No 9
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.5e-62 Score=458.99 Aligned_cols=290 Identities=24% Similarity=0.341 Sum_probs=261.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCe-EEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAV-VRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~-v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+||+|||| |.||+++++.|+..++..||+|+|+++ ++|+++||+|+..... .... .++|+ ++++|||+||+++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence 469999998 999999999999999999999999988 7899999999973221 1222 24575 6799999999999
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~ 175 (332)
|.|+++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++ ++++|+|++||||+ |.||+.|+++
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998664 78889999999999 9999999999
Q ss_pred HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C-----------CCHHHHHHHHHHHhccchhhhhcccCCCch
Q 019993 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243 (332)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~ 243 (332)
.+|+++++++++|+++|||+||+ +++|+||++++.+ + .++++++++.+++++++++|++ +||++
T Consensus 156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t 231 (312)
T cd05293 156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGYT 231 (312)
T ss_pred HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCCc
Confidence 99999999999999999999999 9999999998753 1 1234588999999999999998 56899
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 019993 244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 320 (332)
Q Consensus 244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~ 320 (332)
+||+|.++++++++|++|++ .+++++ +++|.| +++++||+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus 232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~ 307 (312)
T cd05293 232 SWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLW 307 (312)
T ss_pred hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence 99999999999999999875 477775 789988 57999999999999999999996 999999999999999999
Q ss_pred HHHH
Q 019993 321 GSIQ 324 (332)
Q Consensus 321 ~~~~ 324 (332)
+.++
T Consensus 308 ~~~~ 311 (312)
T cd05293 308 EVQK 311 (312)
T ss_pred HHhh
Confidence 8764
No 10
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1e-62 Score=433.00 Aligned_cols=288 Identities=23% Similarity=0.360 Sum_probs=264.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC---CeEEEEeCCCCHHhhcCCCcEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVI 93 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~a~~~aDiVi 93 (332)
+..||+|+|+ |+||.+.|..++.+++..|++|+|.++ ++|++|||+|...+ +++.. ..|+ .+.+++++||
T Consensus 19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvI 93 (332)
T KOG1495|consen 19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVI 93 (332)
T ss_pred cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEE
Confidence 3579999999 999999999999999999999999998 79999999998742 34442 4574 7789999999
Q ss_pred EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 019993 94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR 172 (332)
Q Consensus 94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r 172 (332)
+|||..+++|++|++++.+|+.+++.+.+.+-+|.||++++++|||+|+|||+. ||.+|||++||||. |+||++|
T Consensus 94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSAR 169 (332)
T ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHH
Confidence 999999999999999999999999999999999999999999999999999864 89999999999999 9999999
Q ss_pred HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCC
Q 019993 173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGA 240 (332)
Q Consensus 173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~k 240 (332)
|+++++++||++|+++++||+||||+ +.+|.||...+.+ ..+++.|+++.++|.+.+|+|+++ |
T Consensus 170 FryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---K 245 (332)
T KOG1495|consen 170 FRYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---K 245 (332)
T ss_pred HHHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---c
Confidence 99999999999999999999999999 9999999987632 256678999999999999999995 5
Q ss_pred CchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 019993 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK 317 (332)
Q Consensus 241 g~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~ 317 (332)
|+|+|++|.++++++++|+.|++ ++++++ .++|.| .+++|||+||++|++|+..++.. +|+++|.++|++||+
T Consensus 246 GyTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~ 321 (332)
T KOG1495|consen 246 GYTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAK 321 (332)
T ss_pred CchHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHH
Confidence 99999999999999999999986 588887 679998 56999999999999999999996 999999999999999
Q ss_pred HHHHHH
Q 019993 318 ELAGSI 323 (332)
Q Consensus 318 ~l~~~~ 323 (332)
.|.+..
T Consensus 322 tl~~~q 327 (332)
T KOG1495|consen 322 TLLEAQ 327 (332)
T ss_pred HHHHHH
Confidence 998544
No 11
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=9.3e-62 Score=458.56 Aligned_cols=291 Identities=24% Similarity=0.367 Sum_probs=262.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
+||+|||| |+||+++|+.|+..++..||+|+|+++ ++|+++||.|+... ...... .++| ++.++|||+||+++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d-y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTD-YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCC-HHHhCCCCEEEECCC
Confidence 69999998 999999999999999999999999988 78999999998632 223332 2356 467999999999999
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 176 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~ 176 (332)
.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++.+|||++||||+ |.||++|+++.
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 67789999999999 79999999999
Q ss_pred HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 019993 177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (332)
Q Consensus 177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~ 244 (332)
+|+++|+++++|+++||||||+ +++|+||.+++.+ .+++++++++.+++++++++|++ +||+++
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence 9999999999999999999999 9999999998632 13334578999999999999999 568999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-C--CccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 019993 245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T--ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 320 (332)
Q Consensus 245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~ 320 (332)
||+|.++++++++|++|++ .+++++ +++|+| . +++|+|+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus 267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~ 342 (350)
T PLN02602 267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW 342 (350)
T ss_pred HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999986 588887 689998 3 7899999999999999999996 999999999999999999
Q ss_pred HHHHHh
Q 019993 321 GSIQKG 326 (332)
Q Consensus 321 ~~~~~~ 326 (332)
+.++..
T Consensus 343 ~~~~~~ 348 (350)
T PLN02602 343 EVQSQL 348 (350)
T ss_pred HHHHHh
Confidence 887754
No 12
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=8.8e-61 Score=448.25 Aligned_cols=291 Identities=24% Similarity=0.393 Sum_probs=264.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
++||+|||| |.||+++++.|+..++.+||+|+|+++ ++|+++||.|+... ..+... +++ +++++|||+||+++
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVITA 81 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEEec
Confidence 469999999 999999999999999999999999988 68999999998632 334443 345 57899999999999
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~ 175 (332)
|.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++ ++++|+|++||||+ |.||+.|+++
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~~ 157 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFRY 157 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 67789999999999 8999999999
Q ss_pred HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 019993 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (332)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~ 244 (332)
.+|+++|++|++|+++|||+||+ +++|+||++++++ .+++++++++.++++++++++++ +||+++
T Consensus 158 ~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t~ 233 (315)
T PRK00066 158 MLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGATY 233 (315)
T ss_pred HHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCeeh
Confidence 99999999999999999999999 9999999998743 13446688999999999999999 568999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 019993 245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 322 (332)
Q Consensus 245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~ 322 (332)
||+|.++++++++|+++++ .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.
T Consensus 234 ~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~ 309 (315)
T PRK00066 234 YGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEI 309 (315)
T ss_pred HHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865 588886 789999 78999999999999999999996 99999999999999999999
Q ss_pred HHHh
Q 019993 323 IQKG 326 (332)
Q Consensus 323 ~~~~ 326 (332)
++..
T Consensus 310 ~~~~ 313 (315)
T PRK00066 310 MDEA 313 (315)
T ss_pred HHHh
Confidence 8764
No 13
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-61 Score=451.67 Aligned_cols=298 Identities=22% Similarity=0.301 Sum_probs=262.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCC-C-CeEEEEeCCCCHHhhcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALT 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~-~-~~v~~~~~~~d~~~a~~ 87 (332)
+|+||+||||+|.||+++++.|+..++++ ||+|+|+++ ++|+++||.|+.. . ..+... +.+ +++++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~ 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence 57899999988999999999999988888 999999954 6899999999862 1 233332 334 69999
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 165 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~ 165 (332)
|||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++||++ ++.+ |||++||||+
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~ 155 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM 155 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence 99999999999999999999999999999999999999988 7999999999999999875 5777 9999999999
Q ss_pred ehhhHHHHHHHHHHHhCCCCCCCcee-EEEecCCCceeecccCCCCCC----C-CCHHH--HHHHHHHHhccchhhhhcc
Q 019993 166 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEAK 237 (332)
Q Consensus 166 ~~ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~i~~~~ 237 (332)
|.||++||++.+|++++++|++|+++ ||||||+ +++|+||++++++ + +++++ ++++.+++++++++|++
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-- 232 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE-- 232 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh--
Confidence 99999999999999999999999986 5899999 9999999999854 1 34433 57899999999999999
Q ss_pred cCCCchhhHHHHH-HHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 019993 238 AGAGSATLSMAYA-AVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE 313 (332)
Q Consensus 238 ~~kg~~~~s~a~a-~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~ 313 (332)
+||+++|++|.+ +++++++|++|.+. +.+++++ +++|+| |++++||+||++| +|+++++...+|+++|+++|+
T Consensus 233 -~kG~t~~~~a~~~~~~iv~ail~~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~ 309 (326)
T PRK05442 233 -ARGASSAASAANAAIDHVRDWVLGTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKID 309 (326)
T ss_pred -CcCCccHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHH
Confidence 568999999999 59999999999521 2588886 689999 4899999999999 999999652399999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 019993 314 KAKKELAGSIQKGISF 329 (332)
Q Consensus 314 ~sa~~l~~~~~~~~~~ 329 (332)
+|++.|+++.+.+..+
T Consensus 310 ~s~~~l~~~~~~~~~~ 325 (326)
T PRK05442 310 ATLAELEEERDAVKHL 325 (326)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=3.3e-61 Score=447.77 Aligned_cols=281 Identities=25% Similarity=0.425 Sum_probs=254.6
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 25 IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
|||+ |+||+++|+.|+..++.+||+|+|+++ ++|+++||.|+... ..+... .+| +++++|||+||+++|.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence 6899 999999999999999999999999988 79999999998642 233432 345 588999999999999999
Q ss_pred CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHHH
Q 019993 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179 (332)
Q Consensus 101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la~ 179 (332)
++|++|.|++..|+++++++++.|++++|++++|++|||+|++|+++ ++.+++|++||||+ |.||+.|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764 77889999999999 89999999999999
Q ss_pred HhCCCCCCCceeEEEecCCCceeecccCCCCCC-C---C-------CHHHHHHHHHHHhccchhhhhcccCCCchhhHHH
Q 019993 180 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---F-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248 (332)
Q Consensus 180 ~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~-------~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a 248 (332)
+++++|++|+++|||+||+ +++|+||++++++ + + .+.+++++.+++++++++|++ +||+++|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence 9999999999999999999 9999999998743 1 2 123477999999999999999 5689999999
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 019993 249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321 (332)
Q Consensus 249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~ 321 (332)
.++++++++|++|++ .++|++ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus 229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence 999999999999975 588886 889999 57899999999999999999995 9999999999999999973
No 15
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.5e-60 Score=445.78 Aligned_cols=294 Identities=28% Similarity=0.381 Sum_probs=260.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGM 89 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~a 89 (332)
.||+||||+|+||+++++.|+..++++ +|+|+|+++ ++++++||.|..+ ....... . +.+++++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~-~~~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--T-DPEEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--c-ChHHHhCCC
Confidence 489999999999999999999888877 599999985 6889999999852 1223321 2 347999999
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC-CCCCceEEeeh
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM 167 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~-~~~~kviG~~~ 167 (332)
|+||++||.|+++|++|.|++..|+++++++++.|.++| |++++|++|||+|++|+++ ++.+| +|++||||+|.
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~ 153 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR 153 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence 999999999999999999999999999999999999997 9999999999999999764 67888 59999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCCC---------CCHH-HHHHHHHHHhccchhhhhc
Q 019993 168 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEA 236 (332)
Q Consensus 168 ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~---------~~~~-~~~~l~~~v~~~~~~i~~~ 236 (332)
||++||++.+|++++++|++| +++||||||+ +++|+||++++.+. ++++ ..++|.+++++++++|++
T Consensus 154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~- 231 (323)
T cd00704 154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK- 231 (323)
T ss_pred HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh-
Confidence 999999999999999999999 5689999999 99999999987431 2222 257899999999999999
Q ss_pred ccCCCchhhH-HHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 019993 237 KAGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG 311 (332)
Q Consensus 237 ~~~kg~~~~s-~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~ 311 (332)
+||+++|+ +|.++++++++|++|++.+ .+++++ +++|+| |++++||+||+||++|++++.++ +|+++|+++
T Consensus 232 --~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~ 307 (323)
T cd00704 232 --KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK 307 (323)
T ss_pred --ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence 56889996 6999999999999998643 488996 789998 47999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 019993 312 LEKAKKELAGSIQKGI 327 (332)
Q Consensus 312 l~~sa~~l~~~~~~~~ 327 (332)
|++|+..|+++.+.++
T Consensus 308 l~~s~~~l~~~~~~~~ 323 (323)
T cd00704 308 LKATEEELIEEKEIAL 323 (323)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998764
No 16
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=5.3e-60 Score=455.34 Aligned_cols=301 Identities=22% Similarity=0.251 Sum_probs=265.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhh
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENA 85 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~-------~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a 85 (332)
..++.||+||||+|+||+++++.|+.. ++..||+|+|+++ ++|+++||.|+.+ ...+... +.| +++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~ 173 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV 173 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence 456789999999999999999999988 6667999999998 7999999999873 1234322 345 689
Q ss_pred cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh-hCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 019993 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~-~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG 164 (332)
++|||+||+++|.|+++|++|.|++..|.++++++++.|.+ ++|++++|++|||+|++|+++ ++.++++++|+||
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViG 249 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFH 249 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEE
Confidence 99999999999999999999999999999999999999999 589999999999999999765 6888999999999
Q ss_pred e-ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhh
Q 019993 165 V-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVE 235 (332)
Q Consensus 165 ~-~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~ 235 (332)
+ |.||++|+++.||+++|+++++| +++||||||+ ++||+||.+++++ + +++.+ +++|.+++++++++|++
T Consensus 250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~ 328 (444)
T PLN00112 250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK 328 (444)
T ss_pred eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 9 99999999999999999999999 5699999999 9999999999853 2 23333 67999999999999998
Q ss_pred cccCCCchhh-HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeC-CC--CCccEEEEeEEEcCCceEEec-cCCCCCHHHH
Q 019993 236 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIF-QLGPLNEYER 309 (332)
Q Consensus 236 ~~~~kg~~~~-s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~-~~~~L~~~E~ 309 (332)
+||+++| ++|.++++++++|+++.+. +.+++++ +++| +| +++++||+||++|++|+++++ ++ +|+++|+
T Consensus 329 ---~kG~t~~~s~a~ai~~~I~ail~~~d~-~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~ 403 (444)
T PLN00112 329 ---KWGRSSAASTAVSIADAIKSLVTPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR 403 (444)
T ss_pred ---ccCchhHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence 5677777 9999999999999954442 3588887 7899 48 489999999999999999999 65 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 019993 310 IGLEKAKKELAGSIQKGISFS 330 (332)
Q Consensus 310 ~~l~~sa~~l~~~~~~~~~~~ 330 (332)
++|++|++.|.++.+.+...+
T Consensus 404 ~~l~~Sa~~L~~e~~~~~~~~ 424 (444)
T PLN00112 404 ERIKKSEAELLAEKRCVAHLT 424 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887654
No 17
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=6.5e-60 Score=448.69 Aligned_cols=302 Identities=22% Similarity=0.253 Sum_probs=263.7
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--ccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHh
Q 019993 16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--GAVVRGFLGQPQLEN 84 (332)
Q Consensus 16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~--D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~ 84 (332)
...+|.||+||||+|+||+++|+.|+..++++ .|+|+ |+++ ++|+++||.|+.+ ...+... +.+ ++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~ 116 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YE 116 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence 34567999999999999999999999999877 57777 6666 7899999999862 1233322 345 68
Q ss_pred hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 019993 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 163 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi 163 (332)
+++|||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.+++|++|+|
T Consensus 117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rvi 192 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNF 192 (387)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEE
Confidence 99999999999999999999999999999999999999999988 9999999999999999765 678899999999
Q ss_pred Ee-ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhh
Q 019993 164 GV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVV 234 (332)
Q Consensus 164 G~-~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~ 234 (332)
|+ |.||++|+++.||+++++++++| +++||||||+ +++|+||.+++.+ + +++.+ +++|.+++++++++|+
T Consensus 193 G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi 271 (387)
T TIGR01757 193 HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALI 271 (387)
T ss_pred EecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999 5999999999 9999999998753 2 22223 6799999999999999
Q ss_pred hcccCCCchhh-HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCC-C--CCccEEEEeEEEcCCceEEec-cCCCCCHHH
Q 019993 235 EAKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIF-QLGPLNEYE 308 (332)
Q Consensus 235 ~~~~~kg~~~~-s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~i~-~~~~L~~~E 308 (332)
+ +||++.| ++|.++++++++|+++.+. +.++|++ +++|+ | +++++||+||++|++|+++++ ++ +|+++|
T Consensus 272 ~---~KG~t~~~s~a~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E 346 (387)
T TIGR01757 272 K---KWGRSSAASTAVSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFL 346 (387)
T ss_pred h---ccCchhHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHH
Confidence 8 5677777 9999999999999955442 3588886 78996 8 489999999999999999996 75 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 019993 309 RIGLEKAKKELAGSIQKGISFS 330 (332)
Q Consensus 309 ~~~l~~sa~~l~~~~~~~~~~~ 330 (332)
+++|++|++.|+++.+.+++..
T Consensus 347 ~~~l~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 347 RERIRKSEDELLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888754
No 18
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-59 Score=439.21 Aligned_cols=297 Identities=31% Similarity=0.499 Sum_probs=265.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII 94 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~ 94 (332)
+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +++.++|+.|.... ...+.. .++|+ ++++|||+||+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEE
Confidence 4579999999 9999999999998886 5899999988 67899999987532 122322 24676 58999999999
Q ss_pred cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 019993 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 173 (332)
Q Consensus 95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~ 173 (332)
++|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|++|+++ ++++++|++||+|+ |.||+.|+
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~ 155 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF 155 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998654 67889999999999 59999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCch
Q 019993 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243 (332)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~ 243 (332)
++.+|+++|++|++|+++|+|+||+ +++|+||.+++++ .+.+++++++.+++++++++|++.+ |||++
T Consensus 156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t 233 (319)
T PTZ00117 156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA 233 (319)
T ss_pred HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence 9999999999999999999999999 9999999998742 1455668899999999999999975 78999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 019993 244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321 (332)
Q Consensus 244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~ 321 (332)
+||+|.++++++++|++|++ .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|+..|++
T Consensus 234 ~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~ 309 (319)
T PTZ00117 234 FFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQE 309 (319)
T ss_pred HHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 588887 789999 46899999999999999999996 9999999999999999999
Q ss_pred HHHHhhhh
Q 019993 322 SIQKGISF 329 (332)
Q Consensus 322 ~~~~~~~~ 329 (332)
.++....+
T Consensus 310 ~~~~~~~~ 317 (319)
T PTZ00117 310 LTQKAKAL 317 (319)
T ss_pred HHHHHHHh
Confidence 99877654
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.6e-59 Score=439.37 Aligned_cols=288 Identities=25% Similarity=0.396 Sum_probs=259.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||+|||+ |.+|++++..|+..++..+|+|+|+++ +++.++||.|... ....... ..+ ++++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~-~~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGD-YSDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCC-HHHhCCCCEEEEcc
Confidence 38999999 999999999999999877999999988 6889999988753 1233332 245 46799999999999
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~ 175 (332)
|.|+++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++ ++++++|++||||+ |.||+.|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 67799999999999 8999999999
Q ss_pred HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCchhh
Q 019993 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245 (332)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~ 245 (332)
++|+++++++++|+++|||+||+ +++|+||++++.+ .+.+++++++.+++++++++|++ +||+++|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence 99999999999999999999999 9999999998743 13345688999999999999999 5689999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 019993 246 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323 (332)
Q Consensus 246 s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~ 323 (332)
++|.++++++++|++|++ .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus 229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~ 304 (306)
T cd05291 229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI 304 (306)
T ss_pred HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999865 588886 789999 77999999999999999999995 999999999999999999876
Q ss_pred H
Q 019993 324 Q 324 (332)
Q Consensus 324 ~ 324 (332)
+
T Consensus 305 ~ 305 (306)
T cd05291 305 K 305 (306)
T ss_pred h
Confidence 5
No 20
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-59 Score=435.94 Aligned_cols=292 Identities=33% Similarity=0.580 Sum_probs=261.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII 94 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~ 94 (332)
+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +++.++|+.|... ....+.. .++|+ ++++|||+||+
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence 4579999999 9999999999998887 4699999998 5778999988742 1222332 24675 78999999999
Q ss_pred cCCCCCCCCC-----ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehh
Q 019993 95 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML 168 (332)
Q Consensus 95 ~~g~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~l 168 (332)
++|.|+++|+ +|.+++..|+++++++++.|+++||++|+|++|||+|++++.+ ++++++|++||+|+ |.|
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l 156 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL 156 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence 9999999999 9999999999999999999999999999999999999998754 68899999999999 599
Q ss_pred hHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhccc
Q 019993 169 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA 238 (332)
Q Consensus 169 d~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~ 238 (332)
|+.|+++.+|+++++++++|+++|+|+||+ +++|+||++++.+ .+++++++++.+++++++++|++.+
T Consensus 157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~- 234 (321)
T PTZ00082 157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL- 234 (321)
T ss_pred cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence 999999999999999999999999999999 9999999998743 1455668999999999999999975
Q ss_pred CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 019993 239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK 316 (332)
Q Consensus 239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa 316 (332)
|||+++||+|.++++++++|++|++ .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|+
T Consensus 235 gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa 310 (321)
T PTZ00082 235 GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESI 310 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHH
Confidence 7899999999999999999999976 588887 789999 57999999999999999999996 99999999999999
Q ss_pred HHHHHHHH
Q 019993 317 KELAGSIQ 324 (332)
Q Consensus 317 ~~l~~~~~ 324 (332)
+.|++.++
T Consensus 311 ~~i~~~~~ 318 (321)
T PTZ00082 311 KEVKRLEA 318 (321)
T ss_pred HHHHHHHh
Confidence 99998764
No 21
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.9e-59 Score=439.61 Aligned_cols=295 Identities=22% Similarity=0.310 Sum_probs=262.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~ 87 (332)
+|+||+||||+|+||+++++.|+..++++ ||+|+|+++ ++|+++||.|+.+. ..+... +.+ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 47899999998999999999999999988 999999954 68999999998731 234432 345 69999
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 165 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~ 165 (332)
|||+||+|+|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++||++ ++.+ ++|++||||+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999999775 5777 5999999999
Q ss_pred ehhhHHHHHHHHHHHhCCCCCCCce-eEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhhcc
Q 019993 166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK 237 (332)
Q Consensus 166 ~~ld~~r~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~ 237 (332)
|.||++|+++.+|+++|+++++|++ +|||+||+ +++|+||++++.+ + +.+.+ +++|.+++++++++|++
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-- 230 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK-- 230 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999999998 56999999 9999999998743 1 34443 57999999999999999
Q ss_pred cCCCchhhHHH-HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 019993 238 AGAGSATLSMA-YAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE 313 (332)
Q Consensus 238 ~~kg~~~~s~a-~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~ 313 (332)
+||+++|++| .++++++++|++|++. ..+++++ +++|+| |++++||+||++|++|+++++++ +|+++|+++|+
T Consensus 231 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~ 307 (322)
T cd01338 231 -ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID 307 (322)
T ss_pred -CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence 5689999999 5999999999999852 2588886 689999 48999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHHh
Q 019993 314 KAKKELAGSIQKG 326 (332)
Q Consensus 314 ~sa~~l~~~~~~~ 326 (332)
+|++.|+++.+.+
T Consensus 308 ~s~~~l~~~~~~~ 320 (322)
T cd01338 308 ATLAELLEEREAV 320 (322)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 22
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.8e-59 Score=436.22 Aligned_cols=286 Identities=29% Similarity=0.428 Sum_probs=258.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
|+|||+ |.||+++++.|+..++..+|+|+|+++ +.++++||.|.... ...+... ++| +++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence 689999 999999999999999888999999988 68999999998643 2223332 356 57899999999999999
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHH
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA 178 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la 178 (332)
+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++++|+|++||||+ |.||+.|+++.+|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754 78889999999999 7999999999999
Q ss_pred HHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C------CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHH
Q 019993 179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 251 (332)
Q Consensus 179 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~ 251 (332)
+++++++++|+++|+|+||+ +++|+||++++++ + .++..++++.+++++++++|++ +||+++||+|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence 99999999999999999999 9999999998753 2 1234578999999999999998 5689999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 019993 252 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323 (332)
Q Consensus 252 ~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~ 323 (332)
++++++|++|++ .+++++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus 230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999865 588887 789999 78999999999999999999995 999999999999999999765
No 23
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=4.4e-59 Score=435.21 Aligned_cols=289 Identities=31% Similarity=0.514 Sum_probs=260.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~ 94 (332)
|||+|||+ |.||+.+|+.++..++. +|+|+|+++ ..+.++|+.|... ..+++ .++|+ +.+++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCH-HHhCCCCEEEE
Confidence 69999999 99999999999998876 899999988 5678888877642 12333 25676 45999999999
Q ss_pred cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 019993 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 173 (332)
Q Consensus 95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~ 173 (332)
++|.|+++|++|.|++..|++++++++++|.+++|++++|++|||+|++|+++ ++.+|+|++||||+ |.||+.|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999998764 78899999999999 59999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHH
Q 019993 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248 (332)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a 248 (332)
++.+|+++++++++|+++||||||+ +++|+||.+++.+ + ++++.++++.+++++++++|++.+ |||++.||+|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 9999999999999999999999999 9999999998754 2 344558999999999999999975 7899999999
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019993 249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325 (332)
Q Consensus 249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~ 325 (332)
.++++++++|++|++ .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus 230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~~ 304 (305)
T TIGR01763 230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCKM 304 (305)
T ss_pred HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999975 588886 789999 67999999999999999999996 99999999999999999988753
No 24
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=5.5e-59 Score=411.22 Aligned_cols=321 Identities=72% Similarity=1.114 Sum_probs=303.9
Q ss_pred hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCc
Q 019993 11 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMD 90 (332)
Q Consensus 11 ~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD 90 (332)
.|+.....+..||+|+||+|.+|+.+..+|+.+++.+++.|||+....|.+.|++|..+...+..+.+...+++++++||
T Consensus 19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~ad 98 (345)
T KOG1494|consen 19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGAD 98 (345)
T ss_pred ccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCC
Confidence 45666777889999999999999999999999999999999999888999999999998888998877778999999999
Q ss_pred EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 019993 91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170 (332)
Q Consensus 91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~ 170 (332)
+||+-||+||||||+|+|++..|..++++++..+.++||++.+.++|||++...+++++++++...|+++|++|+|.||.
T Consensus 99 vVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDv 178 (345)
T KOG1494|consen 99 VVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDV 178 (345)
T ss_pred EEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC-CCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHH
Q 019993 171 VRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 249 (332)
Q Consensus 171 ~r~~~~la~~l~v~~-~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~ 249 (332)
.|.+.++++.++++| ++++++|+|+|.+.+++|++|+..+...++++++++++.+++..|.|+.+.|.|+|+..+|+|+
T Consensus 179 VRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAy 258 (345)
T KOG1494|consen 179 VRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAY 258 (345)
T ss_pred hhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHH
Confidence 999999999999999 5599999999999999999999998878999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 019993 250 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329 (332)
Q Consensus 250 a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~ 329 (332)
|.+++..+++++.+++..++.|+|+....-+-.||+.|+++|++|++++..+++|+++|++.|+.+..+|++.+++|++|
T Consensus 259 Aga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv~F 338 (345)
T KOG1494|consen 259 AGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGVTF 338 (345)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999998766788899887765356799999999999999999999999999999999999999999999999
Q ss_pred hc
Q 019993 330 SK 331 (332)
Q Consensus 330 ~~ 331 (332)
.+
T Consensus 339 ~~ 340 (345)
T KOG1494|consen 339 VK 340 (345)
T ss_pred Hh
Confidence 86
No 25
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.6e-57 Score=425.91 Aligned_cols=288 Identities=28% Similarity=0.445 Sum_probs=260.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
|||+|||+ |.||+++++.|+..++..+|+|+|+++ .++.++|+.|.... ...... ++|+ +++++||+||++++
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 69999999 999999999999999878999999988 67899999988531 223333 3464 78999999999999
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 176 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~ 176 (332)
.|++++++|.+++..|+++++++++.+++++|+++++++|||+|++|+++ ++.+|||++||||+ |.||+.|+++.
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765 67789999999999 89999999999
Q ss_pred HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 019993 177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (332)
Q Consensus 177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~ 244 (332)
+|+++++++++|+++|||+||+ +++|+||++++.+ .++++.++++.+++++++++|++ +||+++
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence 9999999999999999999999 9999999998642 23345688999999999999999 568999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 019993 245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 322 (332)
Q Consensus 245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~ 322 (332)
||+|.++++++++|++|++ .++|++ +++|+| .+++++|+||+||++|+++++++ +|+++|+++|++|++.|++.
T Consensus 229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~ 304 (308)
T cd05292 229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA 304 (308)
T ss_pred HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865 588886 789999 57999999999999999999996 99999999999999999988
Q ss_pred HH
Q 019993 323 IQ 324 (332)
Q Consensus 323 ~~ 324 (332)
++
T Consensus 305 ~~ 306 (308)
T cd05292 305 IE 306 (308)
T ss_pred Hh
Confidence 76
No 26
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=3.7e-57 Score=424.51 Aligned_cols=296 Identities=24% Similarity=0.324 Sum_probs=254.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEE
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 92 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV 92 (332)
||+||||+|.||+++++.|...++.. +|+|+|+++ ++++++||.|+..... ..+..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence 69999999999999999999888764 799999965 5789999999973211 1111233547999999999
Q ss_pred EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhH
Q 019993 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV 170 (332)
Q Consensus 93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~ 170 (332)
|++||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|++||++ ++.++++++++||+ |.||+
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999998765 67787777789999 99999
Q ss_pred HHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCC-C----CC----CHHH--HHHHHHHHhccchhhhhccc
Q 019993 171 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----SF----TQEE--TEYLTNRIQNGGTEVVEAKA 238 (332)
Q Consensus 171 ~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~-~----~~----~~~~--~~~l~~~v~~~~~~i~~~~~ 238 (332)
+||++.+|++++++|++|+ ++||||||+ +++|+||++++. + ++ ++++ ++++.+++++++++|++.+
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999995 699999999 999999999886 4 22 2222 5789999999999999953
Q ss_pred CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCC-C--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 019993 239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK 314 (332)
Q Consensus 239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 314 (332)
++++.|++|.++++++++|+++.+ ++.++|++ +++|+ | |++++||+||++|++|++.+.++ +|+++|+++|++
T Consensus 234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~ 310 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL 310 (324)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence 358999999999999999995443 23588887 78999 8 47999999999996666666665 999999999999
Q ss_pred HHHHHHHHHHHhh
Q 019993 315 AKKELAGSIQKGI 327 (332)
Q Consensus 315 sa~~l~~~~~~~~ 327 (332)
|++.|++.++.++
T Consensus 311 s~~~lk~~~~~~~ 323 (324)
T TIGR01758 311 TAKELEEERDEAL 323 (324)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.6e-57 Score=426.21 Aligned_cols=296 Identities=24% Similarity=0.330 Sum_probs=258.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~ 87 (332)
+|.||+||||+|++|+++++.|+..++.+ +|+|+|+++ +.++++|+.|... ...+.. +++++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 46899999999999999999999877654 999999965 5788899998752 123332 357779999
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHh-CCCCCCceEEe
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV 165 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~-~~~~~~kviG~ 165 (332)
|||+||++||.+++++++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++. +++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~ 152 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA 152 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence 99999999999999999999999999999999999999997 7999999999999999775 566 5777777 888
Q ss_pred -ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCC----C-C----CCHHH--HHHHHHHHhccchh
Q 019993 166 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----C-S----FTQEE--TEYLTNRIQNGGTE 232 (332)
Q Consensus 166 -~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~----~-~----~~~~~--~~~l~~~v~~~~~~ 232 (332)
|.||+.|+++.+|+++++++++|+ .+||||||+ +++|+||++++. + + +++++ +++|.+++++++++
T Consensus 153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~ 231 (325)
T cd01336 153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231 (325)
T ss_pred eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence 999999999999999999999996 559999999 999999999885 3 2 22222 58999999999999
Q ss_pred hhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHH
Q 019993 233 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYER 309 (332)
Q Consensus 233 i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~ 309 (332)
|++.+ +|++.||+|.++++++++|++|++. +.+++++ +++|+| +++++||+||++|++|+++++++ +|+++|+
T Consensus 232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~ 307 (325)
T cd01336 232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR 307 (325)
T ss_pred HHHcc--ccchHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence 99953 5799999999999999999998631 2588886 689999 48999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019993 310 IGLEKAKKELAGSIQKGI 327 (332)
Q Consensus 310 ~~l~~sa~~l~~~~~~~~ 327 (332)
++|++|++.|+++++.++
T Consensus 308 ~~l~~s~~~l~~e~~~~~ 325 (325)
T cd01336 308 EKIDATAKELVEEKETAL 325 (325)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998764
No 28
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.1e-55 Score=412.76 Aligned_cols=287 Identities=34% Similarity=0.579 Sum_probs=256.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
|+|||| |+||++++..++..++. +|+|+|+++ +++.++|+.+... ....+.. .++|+ ++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence 689999 99999999999998877 999999988 5677888887642 1222322 24574 779999999999999
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHH
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFV 177 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~l 177 (332)
|+++|++|.+.+.+|++++++++++|++++|++++|++|||+|++|+++ ++++++|++||||+ |.||+.|+++.+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 67889999999999 589999999999
Q ss_pred HHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHH
Q 019993 178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 252 (332)
Q Consensus 178 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~ 252 (332)
|++|++++++|+++++|+||+ +++|+||++++.+ + +++++++++.+++++++++|++.+ |||++.|++|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 999999999999999999999 9999999999853 2 345568999999999999999976 77999999999999
Q ss_pred HHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 019993 253 KFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323 (332)
Q Consensus 253 ~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~ 323 (332)
+++++|++|++ .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 99999999875 588887 789999 56999999999999999999996 999999999999999999765
No 29
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.5e-55 Score=412.39 Aligned_cols=290 Identities=25% Similarity=0.426 Sum_probs=257.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~ 94 (332)
|||+|+||+|.+|++++..|+..++..+|+|+|+++ +++.++|+.|... ....+.. .++| ++++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEE
Confidence 699999988999999999999999888999999954 5788899988642 1122322 2456 467999999999
Q ss_pred cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 019993 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 173 (332)
Q Consensus 95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~ 173 (332)
++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++ ++.+++|++|+||+ |.||+.|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764 67889999999999 79999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C------CCHHHHHHHHHHHhccchhhhhcccCCCchhhH
Q 019993 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 246 (332)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s 246 (332)
++.+|+++++++++|+++|+||||+ +++|+||.+++.+ + +.+.+++++.+++++++++|++ +||++.||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~---~kg~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIIS---LKGGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---hcCCchhh
Confidence 9999999999999999999999999 9999999998753 1 2244578999999999999999 45788999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 019993 247 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323 (332)
Q Consensus 247 ~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~ 323 (332)
+|.++++++++|++|++ .+++++ +++|+| .+++++|+||+||++|+++++++ +|+++|+++|++|+..|++.+
T Consensus 231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~ 306 (309)
T cd05294 231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT 306 (309)
T ss_pred HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976 478876 789987 34899999999999999999996 999999999999999999876
Q ss_pred H
Q 019993 324 Q 324 (332)
Q Consensus 324 ~ 324 (332)
+
T Consensus 307 ~ 307 (309)
T cd05294 307 R 307 (309)
T ss_pred h
Confidence 5
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-55 Score=411.02 Aligned_cols=292 Identities=32% Similarity=0.564 Sum_probs=260.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
++||+|||| |+||++++..++..++. +|+|+|+++ +++.++|+.|.... ...+.. .++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence 379999999 99999999999998877 999999988 67888888876421 112222 24675 779999999999
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 174 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~ 174 (332)
+|.|+++|++|.+++.+|+++++++++.|++++|++|+|++|||+|++|+++ ++++++|++||||+ |.||+.|++
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765 67889999999999 699999999
Q ss_pred HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHH
Q 019993 175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 249 (332)
Q Consensus 175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~ 249 (332)
+.+|++++++|++|+++|+|+||+ +++|+||++++.+ + ++++.++++.++++++++++++.+ +|+++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 999999999999999999999999 9999999998743 2 455557899999999999999864 57899999999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019993 250 AAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325 (332)
Q Consensus 250 a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~ 325 (332)
++++++++|+.|++ .+++++ +++|+| .++++||+||+||++|+++++++ +|+++|+++|++|+++|++.++.
T Consensus 232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~ 305 (307)
T PRK06223 232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA 305 (307)
T ss_pred HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999875 478776 789998 67999999999999999999996 99999999999999999988864
No 31
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=3.7e-55 Score=407.16 Aligned_cols=272 Identities=22% Similarity=0.325 Sum_probs=241.4
Q ss_pred EEEEEccCC----cHHHHHHHhcCCC-C-CeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHH
Q 019993 48 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121 (332)
Q Consensus 48 ei~L~D~~~----~~~~~~dl~~~~~-~-~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~ 121 (332)
.|+|+|+++ ++|+++||.|+.. . ..+.. +++.+++++|||+||++||.|+++|++|.|++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999977 6899999999862 1 23332 3454699999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCC
Q 019993 122 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG 198 (332)
Q Consensus 122 ~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~ 198 (332)
+.|.++ +|++++|++|||+|++||++ ++.+++|++|+||+ |.||++||++.+|+++++++++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999765 67889999999999 99999999999999999999999 7899999999
Q ss_pred CceeecccCCCC----CC-C----CCHHH--HHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCc
Q 019993 199 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAG 267 (332)
Q Consensus 199 ~~~vp~~s~~~v----~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~ 267 (332)
+++|+||++++ ++ + +.+++ .+++.+++++++++|++.+ ||+++||+|.++++++++|+++++ ++.
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~ 243 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT 243 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence 99999999988 43 2 23333 5789999999999999952 689999999999999999999642 235
Q ss_pred EEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 019993 268 VVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 331 (332)
Q Consensus 268 v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~ 331 (332)
+++++ +++|+| +++++||+||++|++|++.++++ +|+++|+++|++|+..|+++++.+++.|+
T Consensus 244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~ 309 (309)
T PLN00135 244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS 309 (309)
T ss_pred EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88886 789999 48999999999999999999896 99999999999999999999999998774
No 32
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.9e-55 Score=423.47 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=256.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEccC--C--cHHHHHHHhcCCCC--CeEEEEeCCCCHH
Q 019993 15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTG--AVVRGFLGQPQLE 83 (332)
Q Consensus 15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~-----~ei~L~D~~--~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~ 83 (332)
....+|.+|+|+||+|++|+++.+.++....+ -.|+|+|+. + ++|+++||.|+.+. ..+... +.+ +
T Consensus 118 ~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ 194 (452)
T cd05295 118 RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-D 194 (452)
T ss_pred hcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-H
Confidence 34556789999999999999999999986432 379999994 4 78999999999731 234433 234 7
Q ss_pred hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEecCCCCchHHHHHHHHHHhC-CCCCC
Q 019993 84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPK 160 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~ 160 (332)
++|+|||+||+++|.|+++|++|.|++..|.++++++++.|.+++| ++++|+.|||+|++|+++ ++.+ ++|++
T Consensus 195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~ 270 (452)
T cd05295 195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRK 270 (452)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999875 4555 99999
Q ss_pred ceEEeehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC-------------C----CCHHH--HH
Q 019993 161 KLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TE 220 (332)
Q Consensus 161 kviG~~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-------------~----~~~~~--~~ 220 (332)
||+|++.++++|++++||+++|+++++| +++||||||+ ++||+||.+++.. + +.+++ .+
T Consensus 271 rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~ 349 (452)
T cd05295 271 NIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWING 349 (452)
T ss_pred HEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHH
Confidence 9999966889999999999999999999 6799999999 9999999998743 1 22333 35
Q ss_pred HHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEE
Q 019993 221 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEE 297 (332)
Q Consensus 221 ~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~ 297 (332)
++.+.+++++. . +||++.||+|.|+++++++|++|++.+ .+++++ +++|+| |++++||+||++|++|++.
T Consensus 350 ~~~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~ 422 (452)
T cd05295 350 EFVATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEV 422 (452)
T ss_pred HHHHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEE
Confidence 77888888887 2 578999999999999999999998522 588886 789999 5899999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 019993 298 IFQLGPLNEYERIGLEKAKKELAGSIQKGI 327 (332)
Q Consensus 298 i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~ 327 (332)
+..+ +|+++|+++|++|+++|+++.+.++
T Consensus 423 V~~L-~L~e~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 423 VTDL-ELSEILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred EeCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9996 9999999999999999999987664
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=4.1e-54 Score=401.15 Aligned_cols=270 Identities=21% Similarity=0.273 Sum_probs=237.2
Q ss_pred EEEEEccCC----cHHHHHHHhcCCCCCeE--EEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHH
Q 019993 48 VLHLYDVVN----TPGVTADISHMDTGAVV--RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121 (332)
Q Consensus 48 ei~L~D~~~----~~~~~~dl~~~~~~~~v--~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~ 121 (332)
.|+|+|+++ ++|+++||.|+. .+.. ... ++|++++++|||+||+|||.|+++|++|.|++..|++++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~ 93 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATG 93 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhc-cccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 899999977 689999999997 2322 222 4577789999999999999999999999999999999999999
Q ss_pred HHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHHHHhCCCCCCCcee-EEEecCC
Q 019993 122 EGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAG 198 (332)
Q Consensus 122 ~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~ 198 (332)
+.|.+++| ++++|++|||+|++|+++. ++.+|+|++ +||+ |.||++||++.+|++++++|++|+.+ ||||||+
T Consensus 94 ~~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~ 169 (313)
T TIGR01756 94 EALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE 169 (313)
T ss_pred HHHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC
Confidence 99999995 5889999999999997641 588999998 9999 99999999999999999999999655 9999999
Q ss_pred CceeecccCCCC--CC-C------CCHH-HHHHHHHHHhccchhhhhcccCCCchhhHHH-HHHHHHHHHHHcCCCCCCc
Q 019993 199 VTILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMA-YAAVKFADACLRGLRGDAG 267 (332)
Q Consensus 199 ~~~vp~~s~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a-~a~~~ii~ai~~~~~~~~~ 267 (332)
+++|+||.+++ .+ + ++++ .++++.+++++++++|++ +||+++|+++ .++++++++|++|++. +.
T Consensus 170 -s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~ 244 (313)
T TIGR01756 170 -SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GE 244 (313)
T ss_pred -ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-Ce
Confidence 99999999988 43 1 2231 367999999999999999 5689999977 6999999999997653 35
Q ss_pred EEEee-EEe--CCC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019993 268 VVECA-FVA--SQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIGLEKAKKELAGSIQKGISFS 330 (332)
Q Consensus 268 v~~~~-~~~--g~~--~~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~ 330 (332)
++|++ +++ |+| ++++++|+||++|++|++++++ + +|+++|+++|++|+..|+++.+.+++.|
T Consensus 245 i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 245 VLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred EEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88997 575 388 3799999999999999999999 7 9999999999999999999999998865
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=4.2e-51 Score=375.00 Aligned_cols=254 Identities=29% Similarity=0.441 Sum_probs=229.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCC--cHHHHHHHhcCCCCC-eEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
|+||||+|.+|+++++.|+..+ ...+|+|+|+++ +++.++|+.|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899998999999999999988 677999999988 688999999886432 23333 26688899999999999999
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHH
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 177 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~l 177 (332)
.++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++ ++++|+|++|+||+|.+|+.|+++.+
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 67889999999999559999999999
Q ss_pred HHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHH
Q 019993 178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 257 (332)
Q Consensus 178 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~a 257 (332)
|+++++++++|+++|||+||+ +++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 999999999999999999999 8999999755 67899999999
Q ss_pred HHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 019993 258 CLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323 (332)
Q Consensus 258 i~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~ 323 (332)
|++|++ .+++++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++.++..+
T Consensus 198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999964 577776 789998 58999999999999999999996 999999999999999999765
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.1e-46 Score=326.56 Aligned_cols=305 Identities=25% Similarity=0.342 Sum_probs=271.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM 89 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-----~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a 89 (332)
+|.+|.|.||+|++|+++.+.++... ....++|+|+.. ++|.+|+|+|+.+ |.++....++|..++|+|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhccC
Confidence 46799999999999999999997642 234899999987 6899999999985 6555444477889999999
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehh
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML 168 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~l 168 (332)
|+.|+.++.|+++||+|.|++..|.++++.-+..+++|+ |+.+|+++.||++..+.++. +.++.+|.+++-++|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence 999999999999999999999999999999999999999 79999999999999987763 56788999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC---------CCCHHHH--HHHHHHHhccchhhhhc
Q 019993 169 DVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVEA 236 (332)
Q Consensus 169 d~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~---------~~~~~~~--~~l~~~v~~~~~~i~~~ 236 (332)
|.+|+..++|.++|++.++| +..+||+|+. +++|+..+++++. ..+|+.| .++.+.|++||.-+++.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 99999999999999999999 8999999999 9999999998842 1456666 58999999999999986
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEeeEEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 019993 237 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK 314 (332)
Q Consensus 237 ~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 314 (332)
+ |.++.+|.|.+++++++.|+.+++...++...++.+|.| |++..||+||++ ++|-|++++..+++++-++++..
T Consensus 238 r--k~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~~ 314 (332)
T KOG1496|consen 238 R--KLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMDL 314 (332)
T ss_pred h--hhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhhh
Confidence 4 568899999999999999999998665443335899999 889999999999 78999999888999999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 019993 315 AKKELAGSIQKGISFSK 331 (332)
Q Consensus 315 sa~~l~~~~~~~~~~~~ 331 (332)
++++|.++.+.+++.++
T Consensus 315 t~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 315 TAKELKEEKDLAYSCLS 331 (332)
T ss_pred hHHHHHHhHHHHHHhhc
Confidence 99999999999998875
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=2.5e-33 Score=241.79 Aligned_cols=159 Identities=35% Similarity=0.552 Sum_probs=144.6
Q ss_pred ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCC-----------CCCCHHHHHHHHHHHhccchhhh
Q 019993 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV 234 (332)
Q Consensus 166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~-----------~~~~~~~~~~l~~~v~~~~~~i~ 234 (332)
|.||++|+++++|+++|++|++++++|||+||+ ++||+||++++. ..+++++++++.+++++++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 679999999999999999999999999999999 999999999874 23667788999999999999999
Q ss_pred hcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCc--cEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 019993 235 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TEL--PFFASKVRLGRQGAEEIFQLGPLNEYERI 310 (332)
Q Consensus 235 ~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~--~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 310 (332)
+.|. |+++||+|.++++++++|++|++ .+++++ +++|+| .++ +|||+||++|++|++++++.++|+++|++
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 9652 89999999999999999999985 588886 789999 334 99999999999999999983499999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 019993 311 GLEKAKKELAGSIQKGISFS 330 (332)
Q Consensus 311 ~l~~sa~~l~~~~~~~~~~~ 330 (332)
+|++|++.|++.++.+++|+
T Consensus 155 ~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 155 KLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=2.7e-31 Score=257.49 Aligned_cols=284 Identities=22% Similarity=0.207 Sum_probs=193.1
Q ss_pred CeEEEEcCCCchHH-HHHHHHHhCC--C-CcEEEEEccCC-cH----HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcE
Q 019993 21 FKVAILGAAGGIGQ-PLAMLMKINP--L-VSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 21 ~kI~IiGa~G~vG~-~~a~~l~~~~--~-~~ei~L~D~~~-~~----~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi 91 (332)
|||+|||| |+.-. .+...|+... + .+||+|+|+++ .. ..+..+.+.. ...++... |+|+++|++||||
T Consensus 1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCCE
Confidence 69999999 85411 1334444443 3 58999999998 22 2233333332 33455433 7899999999999
Q ss_pred EEEcCCC------------CCCCCC---C-----hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 019993 92 VIIPAGV------------PRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF 151 (332)
Q Consensus 92 Vi~~~g~------------~~~~g~---~-----r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~ 151 (332)
||.+..+ |.++|. + ......+|+++++++++.|+++||+||+|++|||+|++|+++
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~---- 153 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV---- 153 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence 9998432 234432 1 355678999999999999999999999999999999998764
Q ss_pred HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCCCceeecccCCCC--------------------
Q 019993 152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKP-------------------- 210 (332)
Q Consensus 152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~~~~vp~~s~~~v-------------------- 210 (332)
++. +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||+. .||..++
T Consensus 154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~~~~ 225 (425)
T cd05197 154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKSKDW 225 (425)
T ss_pred HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccCccc
Confidence 565 378899999876 7899999999999999999999999 9974 2221110
Q ss_pred ------------------------CCC------CCH----H-------------H---H-HHHHHHHhccc--hhhhhcc
Q 019993 211 ------------------------PCS------FTQ----E-------------E---T-EYLTNRIQNGG--TEVVEAK 237 (332)
Q Consensus 211 ------------------------~~~------~~~----~-------------~---~-~~l~~~v~~~~--~~i~~~~ 237 (332)
+.+ +.+ + . + +++.+..+... ...-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~- 304 (425)
T cd05197 226 KTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVEL- 304 (425)
T ss_pred cccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhh-
Confidence 000 000 0 0 0 01111111100 000000
Q ss_pred cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 019993 238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE 313 (332)
Q Consensus 238 ~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~ 313 (332)
..++...|+ ..+++++++|.+|++. ++.++ .++|.+ |++.++++||+++++|+.++.. ++|++..+++++
T Consensus 305 ~~r~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~Li~ 378 (425)
T cd05197 305 IKRGGRKYS--EAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGLLR 378 (425)
T ss_pred hhcCCcccH--HHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHHHH
Confidence 011233344 7899999999999863 44444 678886 7899999999999999999876 699998888777
Q ss_pred HHHHHHHHHHHHh
Q 019993 314 KAKKELAGSIQKG 326 (332)
Q Consensus 314 ~sa~~l~~~~~~~ 326 (332)
.-...-+-.++.+
T Consensus 379 ~~~~~e~l~veAa 391 (425)
T cd05197 379 QRKMRERLALEAF 391 (425)
T ss_pred HHHHHHHHHHHHH
Confidence 7555544444444
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.98 E-value=4.9e-31 Score=256.50 Aligned_cols=288 Identities=17% Similarity=0.142 Sum_probs=195.8
Q ss_pred CeEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEccCC--cH-HHHHHHhcCC--CCCeEEEEeCCCCHHhhcCCCcE
Q 019993 21 FKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TGAVVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~--~l~-~~~~~-~ei~L~D~~~--~~-~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDi 91 (332)
+||+|||| |++|++.+. .++ ..++. .+|+|+|+++ ++ +... +.+.. .....+.. .++|++++++||||
T Consensus 2 ~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dADf 78 (431)
T PRK15076 2 PKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGADY 78 (431)
T ss_pred cEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCCE
Confidence 69999999 999988876 665 33443 4999999988 22 2222 33221 12233332 26788899999999
Q ss_pred EEEcCCCC-CCCC--------------CChhhh--------HhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 019993 92 VIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 148 (332)
Q Consensus 92 Vi~~~g~~-~~~g--------------~~r~~~--------~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~ 148 (332)
||++++.+ .+++ ++|.+. +.+|++++++++++|+++||+||+|++|||+|++|+.+
T Consensus 79 Vv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~- 157 (431)
T PRK15076 79 VINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM- 157 (431)
T ss_pred EeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-
Confidence 99999876 3434 455566 89999999999999999999999999999999998653
Q ss_pred HHHHHhCCCCCCceEEee--hhhHHHHHHHHHHHhCCCCCCCceeEEEecCC----------CceeecccC---C-----
Q 019993 149 EVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQ---V----- 208 (332)
Q Consensus 149 ~~~~~~~~~~~~kviG~~--~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~s~---~----- 208 (332)
+ ++|+.||||+| .+++. +.+|+.+|+++++|++++.|-++- ++.+|.... .
T Consensus 158 ---~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~~ 228 (431)
T PRK15076 158 ---N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTRC 228 (431)
T ss_pred ---h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCchh
Confidence 3 57889999997 45553 899999999999999999993333 133332110 0
Q ss_pred --CCC-----------C-----------CC----CHHHHHHHHH----HHh------ccchhhh-hcccCCCc--hhhHH
Q 019993 209 --KPP-----------C-----------SF----TQEETEYLTN----RIQ------NGGTEVV-EAKAGAGS--ATLSM 247 (332)
Q Consensus 209 --~v~-----------~-----------~~----~~~~~~~l~~----~v~------~~~~~i~-~~~~~kg~--~~~s~ 247 (332)
.++ . .+ .++..+++.. ..+ ....+.. +...++.. ..|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (431)
T PRK15076 229 QDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRS-- 306 (431)
T ss_pred cccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccc--
Confidence 010 0 01 2222222211 000 1111111 11111100 123
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 019993 248 AYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323 (332)
Q Consensus 248 a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~ 323 (332)
+..+++++++|.+|++. ++.++ .++|.+ |+|.++++||.|+++|+.++.. ++|++..+++++.-...-+-.+
T Consensus 307 ~e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~~~e~l~v 382 (431)
T PRK15076 307 REYASTIIEAIETGEPS---VIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNINVQELTV 382 (431)
T ss_pred hHHHHHHHHHHhcCCce---EEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999998762 44444 678886 8899999999999999999877 6999999998877665555555
Q ss_pred HHhh
Q 019993 324 QKGI 327 (332)
Q Consensus 324 ~~~~ 327 (332)
+.++
T Consensus 383 eAa~ 386 (431)
T PRK15076 383 EAAL 386 (431)
T ss_pred HHHH
Confidence 5443
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.98 E-value=1.9e-30 Score=251.14 Aligned_cols=289 Identities=19% Similarity=0.210 Sum_probs=194.4
Q ss_pred CeEEEEcCCCchHHH-HHHHHHhC-C-C-CcEEEEEccC-C--cH---HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCc
Q 019993 21 FKVAILGAAGGIGQP-LAMLMKIN-P-L-VSVLHLYDVV-N--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMD 90 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~-~a~~l~~~-~-~-~~ei~L~D~~-~--~~---~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD 90 (332)
|||+|||| |++... +...|+.. . + .++|+|+|++ + +. ..+.++.+.. .+.++.. .|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence 69999999 865332 34455543 2 3 5899999999 5 21 1223333322 2344443 2679999999999
Q ss_pred EEEEcCCCCCCCCCCh--------------------hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHH
Q 019993 91 LVIIPAGVPRKPGMTR--------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (332)
Q Consensus 91 iVi~~~g~~~~~g~~r--------------------~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~ 150 (332)
|||++++.+..++.++ .....+|+++++++++.|+++||+||+|++|||++++|+.+
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--- 154 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--- 154 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence 9999987665444433 23478999999999999999999999999999999998654
Q ss_pred HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCC---------Cceeec----------------
Q 019993 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL---------------- 204 (332)
Q Consensus 151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~---------------- 204 (332)
++.+ +.||||+|+.+ .|+++.+|+.+|+++++++++++| ||.. ++.+|.
T Consensus 155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~ 229 (419)
T cd05296 155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL 229 (419)
T ss_pred -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence 5654 67999999875 799999999999999999999999 7765 234441
Q ss_pred ccCC------CCCCC------CCHHHH--------------H----HHHHHHhccch-hhhhcccCCCchhhHHHHHHHH
Q 019993 205 LSQV------KPPCS------FTQEET--------------E----YLTNRIQNGGT-EVVEAKAGAGSATLSMAYAAVK 253 (332)
Q Consensus 205 ~s~~------~v~~~------~~~~~~--------------~----~l~~~v~~~~~-~i~~~~~~kg~~~~s~a~a~~~ 253 (332)
|+.. .+++. +.++.. + ++.+..+.... ...+....++...|| ..+++
T Consensus 230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~~ 307 (419)
T cd05296 230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAALA 307 (419)
T ss_pred hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHHH
Confidence 1100 00110 111111 1 11111111100 000000012333455 78899
Q ss_pred HHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 019993 254 FADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG 326 (332)
Q Consensus 254 ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~ 326 (332)
++++|.+|++. .+.+ +.++|.+ |++.++++||.++++|+.++.. ++|++..+++++.-...=+-.++.+
T Consensus 308 ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l~veAa 380 (419)
T cd05296 308 LISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERLTIEAA 380 (419)
T ss_pred HHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998763 4444 4678886 7899999999999999999866 6999998888766544443344433
No 40
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.98 E-value=3.8e-32 Score=226.23 Aligned_cols=139 Identities=38% Similarity=0.602 Sum_probs=123.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
|||+||||+|.||+++++.|+..++.+||+|+|+++ ++|+++|++|..............+ +++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence 699999999999999999999999999999999997 7999999999864332222111334 6899999999999999
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG 164 (332)
|+++|++|.+++..|.++++++++.+.+++|+++++++|||+|++|++ +++.+++|++|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence 999999999999999999999999999999999999999999999765 47889999999998
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.97 E-value=1.6e-29 Score=245.48 Aligned_cols=293 Identities=18% Similarity=0.219 Sum_probs=193.7
Q ss_pred CeEEEEcCCCchHH-HHHHHHHhC--CC-CcEEEEEccCC-cH----HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcE
Q 019993 21 FKVAILGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 21 ~kI~IiGa~G~vG~-~~a~~l~~~--~~-~~ei~L~D~~~-~~----~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi 91 (332)
|||+|||| |+.-+ .+...|++. .+ .++|+|+|+++ .. ..+..+.+.. ...++... |+|+++|++||||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCCE
Confidence 69999999 75421 234455544 23 58999999998 22 2233333322 23455443 6899999999999
Q ss_pred EEEcCCC------------CCCCCC---C-----hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 019993 92 VIIPAGV------------PRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF 151 (332)
Q Consensus 92 Vi~~~g~------------~~~~g~---~-----r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~ 151 (332)
||.+..+ |.++|. + ......||++++.++++.|+++||+||+|++|||++++|+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---- 153 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---- 153 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence 9998432 334442 2 345678999999999999999999999999999999998654
Q ss_pred HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCC----------Cceeeccc----C---------
Q 019993 152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG----------VTILPLLS----Q--------- 207 (332)
Q Consensus 152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~----------~~~vp~~s----~--------- 207 (332)
++. +|+.||||+|+.... +...+|+.+|+++++++..+.| ||.. ++.+|... .
T Consensus 154 ~~~--~~~~kviGlC~~~~~-~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~ 230 (437)
T cd05298 154 RRL--FPNARILNICDMPIA-IMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSD 230 (437)
T ss_pred HHH--CCCCCEEEECCcHHH-HHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCccccc
Confidence 554 788899999987754 7889999999999999999999 3222 13343211 0
Q ss_pred -C---C-------------------CCCC-----C-CHH--------------HHHHHHHHHhccchhhhhcccCCCchh
Q 019993 208 -V---K-------------------PPCS-----F-TQE--------------ETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (332)
Q Consensus 208 -~---~-------------------v~~~-----~-~~~--------------~~~~l~~~v~~~~~~i~~~~~~kg~~~ 244 (332)
. . ++++ + .++ .+++..+++.+...+......-+....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (437)
T cd05298 231 EEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTF 310 (437)
T ss_pred ccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhh
Confidence 0 0 1110 0 111 011111111100000000000000011
Q ss_pred h--HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHH
Q 019993 245 L--SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 318 (332)
Q Consensus 245 ~--s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~ 318 (332)
. ..|.++++++++|++|++ .+++++ .++|.| ++|+++|+||+||++|+.++.. ++|++...++++.-...
T Consensus 311 ~~~~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~~~~ 386 (437)
T cd05298 311 HVDVHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQVAY 386 (437)
T ss_pred hccchHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHHHHH
Confidence 0 135889999999999976 477776 678887 6799999999999999999876 69999999887776655
Q ss_pred HHHHHHHhh
Q 019993 319 LAGSIQKGI 327 (332)
Q Consensus 319 l~~~~~~~~ 327 (332)
-+-.++.++
T Consensus 387 e~l~veAa~ 395 (437)
T cd05298 387 EKLLVEAYL 395 (437)
T ss_pred HHHHHHHHH
Confidence 555554443
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.2e-28 Score=231.76 Aligned_cols=293 Identities=20% Similarity=0.247 Sum_probs=194.5
Q ss_pred CCCeEEEEcCCCchHHHH--HHHHHhCC--CCcEEEEEccCC-cHH----HHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 019993 19 AGFKVAILGAAGGIGQPL--AMLMKINP--LVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGM 89 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~--a~~l~~~~--~~~ei~L~D~~~-~~~----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a 89 (332)
+..||+|||| |+++.+- .-.|.+.+ ...+|+|+|+++ ... .+..+.+.. .+.++... ++|+++||+||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA 78 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA 78 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence 4579999999 9777553 22444443 357999999998 222 233343333 23355543 67999999999
Q ss_pred cEEEEcCC------------CCCCCCCC--------hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 019993 90 DLVIIPAG------------VPRKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149 (332)
Q Consensus 90 DiVi~~~g------------~~~~~g~~--------r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~ 149 (332)
|||+.+.. .|.++|.. ......|+++++.+|++.|+++||+||++++|||+.++|..
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeA--- 155 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEA--- 155 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHH---
Confidence 99999842 24555532 23445799999999999999999999999999999999754
Q ss_pred HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCC-CCCceeEEE-ecCC---------Cceeecc-------------
Q 019993 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-GHAG---------VTILPLL------------- 205 (332)
Q Consensus 150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~-~~v~~~v~G-~hg~---------~~~vp~~------------- 205 (332)
+.+. +|..|++|+|+... -....+|+.||+++ ++++..+.| +|.. .+.+|.+
T Consensus 156 -v~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~ 231 (442)
T COG1486 156 -VRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEP 231 (442)
T ss_pred -HHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence 4554 45449999998764 36899999999975 999999999 3332 1222211
Q ss_pred ----------cCCC----C---CCC------CCHHH----HHHH------HHHHhccchhhhhc------------ccCC
Q 019993 206 ----------SQVK----P---PCS------FTQEE----TEYL------TNRIQNGGTEVVEA------------KAGA 240 (332)
Q Consensus 206 ----------s~~~----v---~~~------~~~~~----~~~l------~~~v~~~~~~i~~~------------~~~k 240 (332)
.... + +++ ++..- ..++ .+.++++..+.++. ...+
T Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~ 311 (442)
T COG1486 232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR 311 (442)
T ss_pred ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence 1000 0 000 00000 0000 01111111111111 0112
Q ss_pred Cch--hhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 019993 241 GSA--TLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK 314 (332)
Q Consensus 241 g~~--~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 314 (332)
+.+ .|+ .+++++++||++|++. ++.+ +.++|.+ |+|.++++||.++++|+.++.. ++|++.-+++++.
T Consensus 312 ~~~~~~~~--e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~ 385 (442)
T COG1486 312 IGAGKYSS--EYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHT 385 (442)
T ss_pred CCcccccH--HHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHH
Confidence 222 444 7889999999999873 4444 4688986 8899999999999999999877 7999999999988
Q ss_pred HHHHHHHHHHHhh
Q 019993 315 AKKELAGSIQKGI 327 (332)
Q Consensus 315 sa~~l~~~~~~~~ 327 (332)
....-+-.++.++
T Consensus 386 ~i~~e~l~veA~~ 398 (442)
T COG1486 386 NINVEELTVEAAL 398 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 7776665555443
No 43
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.96 E-value=4.2e-27 Score=229.21 Aligned_cols=289 Identities=17% Similarity=0.127 Sum_probs=195.3
Q ss_pred CeEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEccCC--cHHHHHHHhcCC--CCCeEEEEeCCCCHHhhcCCCcEE
Q 019993 21 FKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV 92 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~--~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiV 92 (332)
+||+|||| |++|++.+. .++.. .. ..+|+|+|+++ ++....++.+.. .....+.. .++|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 58999999 999999776 45433 33 34999999998 344444433321 11223322 267889999999999
Q ss_pred EEcCCCCCCCCCCh----------------------hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHH
Q 019993 93 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (332)
Q Consensus 93 i~~~g~~~~~g~~r----------------------~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~ 150 (332)
|++++.+..++.++ .....+|++++.++++.+.++||++|++++|||++++|+++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~--- 155 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL--- 155 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence 99987554443332 45667899999999999999999999999999999998654
Q ss_pred HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEEecCC----------CceeecccC-----------CC
Q 019993 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQ-----------VK 209 (332)
Q Consensus 151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~s~-----------~~ 209 (332)
++.++ .|++|+|+. +.++++.+|+.+|+++++|+++++|-++- ++.+|.... ..
T Consensus 156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~ 230 (423)
T cd05297 156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS 230 (423)
T ss_pred -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence 67654 699999865 67899999999999999999999993332 234442111 11
Q ss_pred -CC-----------C-------C------CCHHHHHH------------------HHHHHhccchhhhhc--ccCCCchh
Q 019993 210 -PP-----------C-------S------FTQEETEY------------------LTNRIQNGGTEVVEA--KAGAGSAT 244 (332)
Q Consensus 210 -v~-----------~-------~------~~~~~~~~------------------l~~~v~~~~~~i~~~--~~~kg~~~ 244 (332)
++ . . ..++.... +........ ..+. ....+...
T Consensus 231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 308 (423)
T cd05297 231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR 308 (423)
T ss_pred cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence 10 0 0 01111111 111111000 0000 00011222
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 019993 245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 320 (332)
Q Consensus 245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~ 320 (332)
|+ ..+++++++|.+|++ .++.++ .++|.+ |++.++++||.|+++|+.++.. ++|++..+++++.-...-+
T Consensus 309 ~~--e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~e~ 382 (423)
T cd05297 309 SG--EYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINVQE 382 (423)
T ss_pred ch--HHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHHHH
Confidence 33 678999999999876 345444 678886 7899999999999999999877 6999999988877666555
Q ss_pred HHHHHhh
Q 019993 321 GSIQKGI 327 (332)
Q Consensus 321 ~~~~~~~ 327 (332)
-.++.++
T Consensus 383 l~veA~~ 389 (423)
T cd05297 383 LAVEAAL 389 (423)
T ss_pred HHHHHHH
Confidence 5554443
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.86 E-value=4e-21 Score=165.08 Aligned_cols=151 Identities=22% Similarity=0.245 Sum_probs=106.2
Q ss_pred eEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEccCCc-----HHHHHHHhcCC-CCCeEEEEeCCCCHHhhcCCCcE
Q 019993 22 KVAILGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVNT-----PGVTADISHMD-TGAVVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a--~~l~~~~-~-~~ei~L~D~~~~-----~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDi 91 (332)
||+|||| |++-.+.. ..+...+ + .++|+|+|+++. ...+..+.... ...++.. |+|+++|++||||
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADf 76 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADF 76 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCE
Confidence 8999999 87776642 3444443 2 469999999981 12333333322 2334443 6799999999999
Q ss_pred EEEcCCC------------CCCCCCC----------hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 019993 92 VIIPAGV------------PRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149 (332)
Q Consensus 92 Vi~~~g~------------~~~~g~~----------r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~ 149 (332)
||++... |.+.|.. ......|+++++.++++.|+++|||||+||+|||+.++|..+
T Consensus 77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~-- 154 (183)
T PF02056_consen 77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL-- 154 (183)
T ss_dssp EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH--
T ss_pred EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH--
Confidence 9998543 5555532 345678999999999999999999999999999999997544
Q ss_pred HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCC
Q 019993 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL 183 (332)
Q Consensus 150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v 183 (332)
.+. +|..|++|+|+... -....+|+.||+
T Consensus 155 --~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 --SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM 183 (183)
T ss_dssp --HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred --HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence 454 35579999998775 478899999874
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=2.6e-09 Score=100.97 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=85.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHH-------------HHHhc-CCCCCeEEEEeCCCCHHhhc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-------------ADISH-MDTGAVVRGFLGQPQLENAL 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-------------~dl~~-~~~~~~v~~~~~~~d~~~a~ 86 (332)
|||+|+|. |+||...+.+|++.|+ +|+++|+++.+-.. .+|.. .....+++. |+|+++|+
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence 79999999 9999999999999998 99999998721111 12222 111234664 67999999
Q ss_pred CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe--cCCCCchHHHH
Q 019993 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA 147 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~--tNP~~~~t~~~ 147 (332)
+++|+++++.|+|.++.. ..++..+...++.|.++.+...+|+. |-|++....+-
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 999999999999987733 33477888888888888876444444 79998876553
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.01 E-value=9.4e-10 Score=95.32 Aligned_cols=118 Identities=25% Similarity=0.370 Sum_probs=77.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-H--HHHHH----HhcCC-C--------CCeEEEEeCCCCHH
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-P--GVTAD----ISHMD-T--------GAVVRGFLGQPQLE 83 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~--~~~~d----l~~~~-~--------~~~v~~~~~~~d~~ 83 (332)
||+|||| |.+|..+|..++..|+ +|+|+|.++ . . ....+ +.+.. . ..+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999999 9999999999999998 999999987 1 1 11111 11111 1 234554 45776
Q ss_pred hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 019993 84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv 162 (332)
++ .+||+||.+. .+++++.+++..++++++ |++ |++||....... +.. .... .++|+
T Consensus 75 ~~-~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSsl~i~---~la-~~~~-~p~R~ 132 (180)
T PF02737_consen 75 EA-VDADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSSLSIS---ELA-AALS-RPERF 132 (180)
T ss_dssp GG-CTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SSS-HH---HHH-TTSS-TGGGE
T ss_pred HH-hhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCCCCHH---HHH-hccC-cCceE
Confidence 65 4999999995 678999999999999999 577 458887765542 222 2233 35678
Q ss_pred EEeeh
Q 019993 163 LGVTM 167 (332)
Q Consensus 163 iG~~~ 167 (332)
+|+-.
T Consensus 133 ig~Hf 137 (180)
T PF02737_consen 133 IGMHF 137 (180)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88753
No 47
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.00 E-value=2.3e-09 Score=99.52 Aligned_cols=122 Identities=23% Similarity=0.312 Sum_probs=86.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHH--H----HHHhcCC--C----CCeEEEEeCCCCHHh
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--T----ADISHMD--T----GAVVRGFLGQPQLEN 84 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~--~----~dl~~~~--~----~~~v~~~~~~~d~~~ 84 (332)
.+||+|||| |.||+.+|..++..|+ +|+++|+++ .++. . ..+.... . ...+..+..++++ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999999 9999999999999778 999999986 1211 1 1111111 0 1112223235565 5
Q ss_pred hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 019993 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 163 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi 163 (332)
++++||+||..+ .+|+++.+++..++++++ |++ |++||.+.+...-++ ..+. .|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia----~~~~-rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELA----EALK-RPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHH----HHhC-CchhEE
Confidence 899999999995 889999999999999999 688 559999987653332 2222 346787
Q ss_pred Eee
Q 019993 164 GVT 166 (332)
Q Consensus 164 G~~ 166 (332)
|+.
T Consensus 138 G~H 140 (307)
T COG1250 138 GLH 140 (307)
T ss_pred EEe
Confidence 773
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.84 E-value=4.5e-08 Score=92.11 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=83.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHH-----H---HHhcCC-----CCCeEEEEeCCCCHHhhc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT-----A---DISHMD-----TGAVVRGFLGQPQLENAL 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~-----~---dl~~~~-----~~~~v~~~~~~~d~~~a~ 86 (332)
.||+|||+ |.||+.+|..++..|+ +|+++|+++ ..... . .+.... ...++.. ++++++++
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av 81 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV 81 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence 58999999 9999999999999999 999999986 11110 0 111111 0123343 45788999
Q ss_pred CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 019993 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
++||+|+.++ .+|+++.+++...+.+++| ++ |+.||.+..... +. ..... .|+|++|+
T Consensus 82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~~-~p~R~~g~ 140 (321)
T PRK07066 82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARAT-HPERCVVG 140 (321)
T ss_pred cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhcC-CcccEEEE
Confidence 9999999995 6789999999999999996 55 668888876542 22 22222 23577775
No 49
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.82 E-value=6.2e-08 Score=100.59 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=93.1
Q ss_pred hhHHhhhhhccCC------CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHH--HHH----HhcCC-
Q 019993 5 SCLRQAKCRAKGG------AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TAD----ISHMD- 68 (332)
Q Consensus 5 ~~~~~~~~~~~~~------~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~d----l~~~~- 68 (332)
.||-+..+.+... .+..||+|||| |.||..+|..++..|+ +|+|+|+++ . ++. +.+ +.+..
T Consensus 292 ~ff~~r~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~ 368 (714)
T TIGR02437 292 LFLNDQYVKGKAKKADKIAKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGR 368 (714)
T ss_pred HHhhhHhhcCCCCCCCCCccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4666666654431 23368999999 9999999999999998 999999987 1 221 111 11111
Q ss_pred C--------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 019993 69 T--------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP 139 (332)
Q Consensus 69 ~--------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP 139 (332)
. ..+++. ++|+ +++++||+||.++ .+++++.+++..++++++| ++ |++||.
T Consensus 369 ~~~~~~~~~~~~i~~---~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnT 428 (714)
T TIGR02437 369 ITPAKMAGVLNGITP---TLSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNT 428 (714)
T ss_pred CChhhHHHHHhCeEE---eCCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECC
Confidence 0 123443 4575 7799999999995 7889999999999999995 66 559999
Q ss_pred CCchHHHHHHHHHHhCCCCCCceEEee
Q 019993 140 VNSTVPIAAEVFKKAGTYDPKKLLGVT 166 (332)
Q Consensus 140 ~~~~t~~~~~~~~~~~~~~~~kviG~~ 166 (332)
+.+-..-+ . .... .|+|++|+.
T Consensus 429 S~l~i~~i---a-~~~~-~p~r~ig~H 450 (714)
T TIGR02437 429 STISISLL---A-KALK-RPENFCGMH 450 (714)
T ss_pred CCCCHHHH---H-hhcC-CcccEEEEe
Confidence 88664322 2 2233 356788874
No 50
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.81 E-value=6.1e-08 Score=100.88 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=93.1
Q ss_pred hhHHhhhhhccCC----CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHH--HHH----HhcCC-C-
Q 019993 5 SCLRQAKCRAKGG----AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TAD----ISHMD-T- 69 (332)
Q Consensus 5 ~~~~~~~~~~~~~----~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~--~~d----l~~~~-~- 69 (332)
.||-+..+.+... .+..||+|||| |.||+.+|..++..|+ +|+|+|+++ .++. ..+ +.... .
T Consensus 316 ~f~~~~~~~~~~~~~~~~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~ 392 (737)
T TIGR02441 316 LFHGQTDCKKNKFGKPQRPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKIT 392 (737)
T ss_pred HHHHHHHccCCCCCCCCCcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5677777765531 23368999999 9999999999999998 999999987 1221 111 11111 0
Q ss_pred -------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 019993 70 -------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN 141 (332)
Q Consensus 70 -------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~ 141 (332)
..+++. ++|+ +++++||+||.++ .+|+++.+++..++++++| ++ |++||.+.
T Consensus 393 ~~~~~~~~~~i~~---~~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSs 452 (737)
T TIGR02441 393 SLERDSILSNLTP---TLDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSA 452 (737)
T ss_pred HHHHHHHHhCeEE---eCCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCC
Confidence 124443 4576 6899999999995 7889999999999999995 66 45899988
Q ss_pred chHHHHHHHHHHhCCCCCCceEEe
Q 019993 142 STVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 142 ~~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
+-..-++ ..... |+|++|+
T Consensus 453 l~i~~la----~~~~~-p~r~ig~ 471 (737)
T TIGR02441 453 LPIKDIA----AVSSR-PEKVIGM 471 (737)
T ss_pred CCHHHHH----hhcCC-ccceEEE
Confidence 6643222 22333 4678776
No 51
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.80 E-value=7.4e-08 Score=100.13 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=91.4
Q ss_pred hhHHhhhhhccCC------CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHH--HH----HHhcCC-
Q 019993 5 SCLRQAKCRAKGG------AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA----DISHMD- 68 (332)
Q Consensus 5 ~~~~~~~~~~~~~------~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~--~~----dl~~~~- 68 (332)
.||.+..+.+... .+..||+|||| |.||..+|..++..|+ +|+|+|+++ + ++. .. .+....
T Consensus 292 aF~~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~ 368 (715)
T PRK11730 292 IFLNDQYVKGKAKKLAKDAKPVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGK 368 (715)
T ss_pred HHHHHHHhcCCCCCCCCCccccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3555555644321 12358999999 9999999999999999 999999987 1 211 11 111111
Q ss_pred C--------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 019993 69 T--------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP 139 (332)
Q Consensus 69 ~--------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP 139 (332)
. ..+++. ++|+ +++++||+||.++ .+++++.+++..++++++| ++ |++||.
T Consensus 369 ~~~~~~~~~~~~i~~---~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNT 428 (715)
T PRK11730 369 IDGAKMAGVLSSIRP---TLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNT 428 (715)
T ss_pred CChhhHHHHHhCeEE---eCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcC
Confidence 0 123443 4576 7799999999995 7889999999999999995 66 559999
Q ss_pred CCchHHHHHHHHHHhCCCCCCceEEe
Q 019993 140 VNSTVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 140 ~~~~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
+.+-..-+ . ..... |.|++|+
T Consensus 429 Ssl~i~~l---a-~~~~~-p~r~~g~ 449 (715)
T PRK11730 429 STISISLL---A-KALKR-PENFCGM 449 (715)
T ss_pred CCCCHHHH---H-hhcCC-CccEEEE
Confidence 88654322 2 22333 4678886
No 52
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.80 E-value=1.8e-08 Score=87.60 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=79.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC----------------CCCCeEEEEeCCCCHHh
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----------------DTGAVVRGFLGQPQLEN 84 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----------------~~~~~v~~~~~~~d~~~ 84 (332)
|||+|||. |++|..+|..|+..|+ +|+.+|+++.+ +..+... ....+++. ++|.++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~--v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEK--VEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE 72 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHH--HHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHH--HHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence 79999999 9999999999999998 99999998721 1111111 01345665 457888
Q ss_pred hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHHHHHHHHHHhCCCCCCce
Q 019993 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKL 162 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~~~~~~~~~~~~~~~~kv 162 (332)
++++||++|++.++|...+. .-++..+.+.++.|.++.. +.+|++- |-|.+..-.++...+.+.++.. .=
T Consensus 73 ai~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~ 144 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--ED 144 (185)
T ss_dssp HHHH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TC
T ss_pred hhhccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cC
Confidence 89999999999998876543 2235556666666666653 4444433 6888887645555566665433 33
Q ss_pred EEeehhh
Q 019993 163 LGVTMLD 169 (332)
Q Consensus 163 iG~~~ld 169 (332)
++++..+
T Consensus 145 f~la~~P 151 (185)
T PF03721_consen 145 FHLAYSP 151 (185)
T ss_dssp EEEEE--
T ss_pred CeEEECC
Confidence 4554433
No 53
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.76 E-value=1e-07 Score=98.91 Aligned_cols=134 Identities=18% Similarity=0.262 Sum_probs=89.6
Q ss_pred hhHHhhhhhcc-----CCCCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCC-c--HHH--HH----HHhcC-C
Q 019993 5 SCLRQAKCRAK-----GGAAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TA----DISHM-D 68 (332)
Q Consensus 5 ~~~~~~~~~~~-----~~~~~~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~--~~~--~~----dl~~~-~ 68 (332)
.||.+..+.+. +..+..||+|||| |.||+.+|..++ ..|+ +|+|+|.++ . ++. .. .+... .
T Consensus 284 ~f~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~ 360 (699)
T TIGR02440 284 IFFATTEMKKETGSDATPAKIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRH 360 (699)
T ss_pred HHHHHHHhcCCCCCCCCcccccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35555555333 1112358999999 999999999888 4788 999999987 1 111 11 11111 1
Q ss_pred -C-------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 019993 69 -T-------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP 139 (332)
Q Consensus 69 -~-------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP 139 (332)
. ..++.. ++|+ +++++||+||.++ .+++++.+++..+++++++ ++ |++||.
T Consensus 361 ~~~~~~~~~~~~i~~---~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnT 420 (699)
T TIGR02440 361 MTPAERDNQMALITG---TTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNT 420 (699)
T ss_pred CCHHHHHHHHcCeEE---eCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCC
Confidence 0 123443 4676 6899999999995 7789999999999999995 66 558999
Q ss_pred CCchHHHHHHHHHHhCCCCCCceEEee
Q 019993 140 VNSTVPIAAEVFKKAGTYDPKKLLGVT 166 (332)
Q Consensus 140 ~~~~t~~~~~~~~~~~~~~~~kviG~~ 166 (332)
......-++ .... .|+|++|+.
T Consensus 421 S~l~i~~la----~~~~-~p~r~~g~H 442 (699)
T TIGR02440 421 SSLPIGQIA----AAAS-RPENVIGLH 442 (699)
T ss_pred CCCCHHHHH----HhcC-CcccEEEEe
Confidence 886543222 2222 346787763
No 54
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.76 E-value=1.7e-07 Score=87.11 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=81.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHH--HH----HHhcCCC---------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMDT---------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~----dl~~~~~---------~~~v~~~~~~~d~ 82 (332)
.||+|||+ |.+|..+|..++..|+ +|+++|+++ . .+. .. .+.+... ..+++. ++|+
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~~ 79 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTDL 79 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCCH
Confidence 48999999 9999999999999998 999999987 1 111 11 1111110 123333 4576
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-C-CcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 160 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~ 160 (332)
+++++||+||.++ .++.++.+++...+++++ + ++ |++||........+ ...... +.
T Consensus 80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~l----a~~~~~-~~ 137 (286)
T PRK07819 80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKL----AAATKR-PG 137 (286)
T ss_pred -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH----HhhcCC-Cc
Confidence 7799999999995 778999999999999997 4 66 44777776554322 233333 45
Q ss_pred ceEEee
Q 019993 161 KLLGVT 166 (332)
Q Consensus 161 kviG~~ 166 (332)
|++|+.
T Consensus 138 r~~g~h 143 (286)
T PRK07819 138 RVLGLH 143 (286)
T ss_pred cEEEEe
Confidence 677764
No 55
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.74 E-value=1e-07 Score=99.00 Aligned_cols=119 Identities=19% Similarity=0.301 Sum_probs=84.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCC-c--HH--HHHH----HhcC-C-C-------CCeEEEEeCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTAD----ISHM-D-T-------GAVVRGFLGQP 80 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~--~~--~~~d----l~~~-~-~-------~~~v~~~~~~~ 80 (332)
-.||+|||| |.||..+|..++ ..|+ +|+|+|.++ . ++ ...+ +... . . ..+++. ++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~ 382 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT 382 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence 368999999 999999999998 7788 999999986 1 21 1111 1111 1 0 124443 45
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 019993 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159 (332)
Q Consensus 81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~ 159 (332)
|+ +++++||+||.++ .+|+++.+++..++++++ |++ |++||...+...-++ ..... +
T Consensus 383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la----~~~~~-p 440 (708)
T PRK11154 383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIA----AAAAR-P 440 (708)
T ss_pred Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----HhcCc-c
Confidence 76 7899999999995 788999999999999999 577 458999886653222 22233 4
Q ss_pred CceEEee
Q 019993 160 KKLLGVT 166 (332)
Q Consensus 160 ~kviG~~ 166 (332)
.|++|+.
T Consensus 441 ~r~ig~H 447 (708)
T PRK11154 441 EQVIGLH 447 (708)
T ss_pred cceEEEe
Confidence 5787773
No 56
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.65 E-value=3.3e-07 Score=85.20 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHH----HHhc-----CCC---------CCeEEEEeCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISH-----MDT---------GAVVRGFLGQP 80 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~----dl~~-----~~~---------~~~v~~~~~~~ 80 (332)
.+||+|||+ |.+|+.+|..++..|+ +|+++|+++ ....+. .+.+ ... ..++.. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 358999999 9999999999999888 999999986 111111 1100 000 123333 45
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 019993 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 160 (332)
Q Consensus 81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~ 160 (332)
|+++++++||+||++. .++.+..+++.+++.+++++.. |+++|....... +. ...... +.
T Consensus 77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~---~~-~~~~~~-~~ 136 (287)
T PRK08293 77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPS---QF-AEATGR-PE 136 (287)
T ss_pred CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHH---HH-HhhcCC-cc
Confidence 7778899999999995 4557888888899998886432 335666654331 22 222222 45
Q ss_pred ceEEee
Q 019993 161 KLLGVT 166 (332)
Q Consensus 161 kviG~~ 166 (332)
|++|+.
T Consensus 137 r~vg~H 142 (287)
T PRK08293 137 KFLALH 142 (287)
T ss_pred cEEEEc
Confidence 677763
No 57
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.63 E-value=4.4e-08 Score=85.77 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c-----HHHHHHHhcCC----C-------------CCeEEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD----T-------------GAVVRGF 76 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-----~~~~~dl~~~~----~-------------~~~v~~~ 76 (332)
...|+|+|| |.+|+.+|+..+..|+ .|+|+|.++ . ++....+.+.. . ..+++
T Consensus 11 ~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~-- 85 (298)
T KOG2304|consen 11 IKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK-- 85 (298)
T ss_pred ccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH--
Confidence 357999999 9999999999999999 999999998 1 22222222111 0 01222
Q ss_pred eCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 77 ~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
.++|.+.++.+||+||.+ +.+|+.+.+++.+.+++.|+ ++ |..||.....-. .. ....
T Consensus 86 -~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt---~i-a~~~ 144 (298)
T KOG2304|consen 86 -TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLT---DI-ASAT 144 (298)
T ss_pred -HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHH---HH-Hhhc
Confidence 246888999999999988 48999999999999999996 55 558998875532 11 1222
Q ss_pred CCCCCceEEee
Q 019993 156 TYDPKKLLGVT 166 (332)
Q Consensus 156 ~~~~~kviG~~ 166 (332)
-.+.++.|+.
T Consensus 145 -~~~srf~GlH 154 (298)
T KOG2304|consen 145 -QRPSRFAGLH 154 (298)
T ss_pred -cChhhhceee
Confidence 2456888884
No 58
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.56 E-value=7.3e-07 Score=88.27 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC---------------CCCCeEEEEeCCCCHHh
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---------------DTGAVVRGFLGQPQLEN 84 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~---------------~~~~~v~~~~~~~d~~~ 84 (332)
+|||+|||+ |+||..+|..|+..|...+|+.+|+++.+ +..+... .....+.. |+|+++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK 74 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence 479999999 99999999999998654499999998721 1111111 00112333 467778
Q ss_pred hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe--cCCCCchHHH
Q 019993 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPI 146 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~--tNP~~~~t~~ 146 (332)
++++||++|++.++|...+....+ -.-++..+.+.++.|.++.++..+|+. |.|.+..-.+
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~ 137 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence 899999999999999754221001 023466778888888888765444333 6888876544
No 59
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.54 E-value=1.6e-06 Score=80.29 Aligned_cols=118 Identities=20% Similarity=0.353 Sum_probs=79.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHH--H----HHHhcCC-C--------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--T----ADISHMD-T--------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~--~----~dl~~~~-~--------~~~v~~~~~~~d~ 82 (332)
+||+|||+ |.||..++..++..|+ +|+++|+++. ++. . .++.... . ..+++. ++|+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~ 77 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL 77 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 58999999 9999999999999988 9999999872 111 0 1121111 0 113443 4565
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k 161 (332)
+++++||+||+++ .++.....++.+.+.++++ ++++ .||..++-...+ ....+. +.|
T Consensus 78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~r 135 (282)
T PRK05808 78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PDK 135 (282)
T ss_pred -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Ccc
Confidence 5689999999995 5567888899999999885 5543 677777554322 233333 357
Q ss_pred eEEee
Q 019993 162 LLGVT 166 (332)
Q Consensus 162 viG~~ 166 (332)
++|+.
T Consensus 136 ~ig~h 140 (282)
T PRK05808 136 VIGMH 140 (282)
T ss_pred eEEee
Confidence 77764
No 60
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.52 E-value=2.3e-06 Score=76.45 Aligned_cols=100 Identities=20% Similarity=0.149 Sum_probs=64.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi~ 94 (332)
|||+|||++|.+|++++..|...++ +|.++|+++ ......++.+.. ....+.. + +..++++++|+||+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEE
Confidence 6899998449999999999998887 999999876 222223222211 1112221 2 33688999999999
Q ss_pred cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 019993 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142 (332)
Q Consensus 95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~ 142 (332)
+.. ...+.++++.+....++.+||-++||...
T Consensus 75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 952 12233444445444445677778999875
No 61
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.50 E-value=5.1e-07 Score=76.40 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=64.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--C------CCeEEEEeCCCCHHhhcCCCcEEE
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T------GAVVRGFLGQPQLENALTGMDLVI 93 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~------~~~v~~~~~~~d~~~a~~~aDiVi 93 (332)
||+|+|| |..|.++|..|..+++ +|.|+++++.......-.+.. . ...+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 7999999 9999999999999997 999999976221122122221 1 123433 568999999999999
Q ss_pred EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 019993 94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS 137 (332)
Q Consensus 94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~t 137 (332)
++. | ....+++++++..+.+ +..+++++
T Consensus 75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 984 2 3446788888888874 44555543
No 62
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.50 E-value=1.6e-06 Score=80.73 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=76.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHH-H----------HhcCCC---------CCeEEEEeCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA-D----------ISHMDT---------GAVVRGFLGQ 79 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~-d----------l~~~~~---------~~~v~~~~~~ 79 (332)
.||+|||+ |.+|..++..++..|+ +|+++|+++ ....+. . +.+... ..++.. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999999 9999999999999998 999999987 111111 1 111110 012232 3
Q ss_pred CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
+++ +++++||+||++. ..+.+..+++.+.+.++++ ++++ +||.......-+ ..... .
T Consensus 78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l----a~~~~-~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI----ATALE-R 135 (291)
T ss_pred CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH----HhhcC-C
Confidence 465 6789999999995 4456777888888988885 5543 566665543221 12222 2
Q ss_pred CCceEEee
Q 019993 159 PKKLLGVT 166 (332)
Q Consensus 159 ~~kviG~~ 166 (332)
+.|++|+.
T Consensus 136 ~~r~ig~h 143 (291)
T PRK06035 136 KDRFIGMH 143 (291)
T ss_pred cccEEEEe
Confidence 45777774
No 63
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.47 E-value=5.3e-08 Score=89.79 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=75.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEE----EEeC----CCCHHhhcC--CCc
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR----GFLG----QPQLENALT--GMD 90 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~----~~~~----~~d~~~a~~--~aD 90 (332)
|.|+||+|++|+.++..|+..++ .+|+++|.++ ......++.......+++ ...+ ...+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 68999999999999999998875 4899999998 444555553111111121 1111 112456778 999
Q ss_pred EEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec----CCCCch
Q 019993 91 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST 143 (332)
Q Consensus 91 iVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t----NP~~~~ 143 (332)
+|+++|....-+- ....+.+..|+-..+++++...++.-+..|.+.| ||+++|
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm 138 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM 138 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence 9999998654332 2456778999999999999999988777666664 666665
No 64
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.44 E-value=2e-06 Score=85.88 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHH--H----HHHhcCCC---------CCeEEEEeCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMDT---------GAVVRGFLGQP 80 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~--~----~dl~~~~~---------~~~v~~~~~~~ 80 (332)
+..||+|||+ |.||+.+|..++..|+ +|+++|+++ + ++. . ..+..... ..++.. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 3468999999 9999999999999998 999999987 1 111 1 11211110 123443 45
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 019993 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 144 (332)
Q Consensus 81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t 144 (332)
++ +++++||+||.+. .++..+.+.+...+.+++|... |++||.+.+-.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i 125 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSI 125 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCH
Confidence 66 5689999999994 6778899999999999996442 45788877654
No 65
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.42 E-value=1.4e-06 Score=80.76 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=75.4
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcCCCcEEEEcCCCCCCC
Q 019993 24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVPRKP 102 (332)
Q Consensus 24 ~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVi~~~g~~~~~ 102 (332)
.|+||+|++|++++..|++.|...+|..+|+........++........+. .+....++.++++++|+||++|+...-.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 489999999999999999998555999999876222212222222110112 1222356789999999999998754333
Q ss_pred C-CChhhhHhhhHHHHHHHHHHHHhhCCCc
Q 019993 103 G-MTRDDLFNINAGIVRTLCEGIAKCCPNA 131 (332)
Q Consensus 103 g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a 131 (332)
+ .....+..-|+...+++.+...+..-+.
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr 110 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKR 110 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 3 4566678899999999999999775443
No 66
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.42 E-value=4.4e-06 Score=82.53 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=90.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC----CCCHHhhcCC--CcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~--aDi 91 (332)
.+.|.|+||+|++|+.++..++..++ .+|+++|.+| ......++.+.....+++.+.+ ..-.+.++++ .|+
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 35799999999999999998888755 4999999998 3444455554311223332211 2235678899 999
Q ss_pred EEEcCCCCCCCCC--ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec----CCCCch
Q 019993 92 VIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST 143 (332)
Q Consensus 92 Vi~~~g~~~~~g~--~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t----NP~~~~ 143 (332)
|+++|...+-|-. ...+-+..|+-..+++++...++.-+..|.+.| ||+++|
T Consensus 329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence 9999988776654 356778999999999999999888677666665 666655
No 67
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.42 E-value=2.6e-06 Score=83.91 Aligned_cols=170 Identities=11% Similarity=-0.023 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
++|||.|+||+|++|++++..|+..|+ +|+.+|... .......+. ....+..+.. .-+..++.++|+||++|
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~---~~~~~~~~~~-Di~~~~~~~~D~ViHlA 192 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLF---GNPRFELIRH-DVVEPILLEVDQIYHLA 192 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhc---cCCceEEEEC-ccccccccCCCEEEECc
Confidence 358999999999999999999999888 999999753 111111111 1123332221 11234578999999998
Q ss_pred CCCC--CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH--HHHHHHHHHh-CCCCCCceEEeehhhH
Q 019993 97 GVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV--PIAAEVFKKA-GTYDPKKLLGVTMLDV 170 (332)
Q Consensus 97 g~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t--~~~~~~~~~~-~~~~~~kviG~~~ld~ 170 (332)
+... ....+..+++..|+....++++.+++... .+|++|. -+.... ....|-.+.. .-+.+...+|.+.+..
T Consensus 193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~a 270 (436)
T PLN02166 193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA 270 (436)
T ss_pred eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHH
Confidence 7532 22234566778999999999999988753 5555533 111000 0000000000 0012234577776666
Q ss_pred HHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 171 VRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 171 ~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
+++...+++..+++..-++ ..++|.+
T Consensus 271 E~~~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 271 ETLAMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred HHHHHHHHHHhCCCeEEEEEccccCCC
Confidence 6666666666666543332 3467754
No 68
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.40 E-value=2.6e-06 Score=85.29 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=78.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHH--HHH----HhcCCC---------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD----ISHMDT---------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~--~~d----l~~~~~---------~~~v~~~~~~~d~ 82 (332)
.||+|||+ |.||..+|..++..|+ +|+++|+++. ++. ..+ +..... ..++.. ++++
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~ 81 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL 81 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 58999999 9999999999999998 9999999871 111 111 111110 123443 3465
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k 161 (332)
+++++||+||.+. .++..+.+.+...+++.+ |+++ ++||...+-..-+ ...... ++|
T Consensus 82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ai--lasntStl~i~~l----a~~~~~-p~r 139 (507)
T PRK08268 82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCI--LATNTSSLSITAI----AAALKH-PER 139 (507)
T ss_pred -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHH----HhhcCC-ccc
Confidence 5689999999994 677888899989999998 4663 3566665443211 222222 456
Q ss_pred eEEee
Q 019993 162 LLGVT 166 (332)
Q Consensus 162 viG~~ 166 (332)
++|+.
T Consensus 140 ~~G~h 144 (507)
T PRK08268 140 VAGLH 144 (507)
T ss_pred EEEEe
Confidence 77764
No 69
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.39 E-value=6.9e-06 Score=76.51 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHH----HH----hcCCC--------CCeEEEEeCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTA----DI----SHMDT--------GAVVRGFLGQPQ 81 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~----dl----~~~~~--------~~~v~~~~~~~d 81 (332)
.+||+|||+ |.+|..+|..|+..|+ +|+++|+++. ..... .+ ..... ..++.. +++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 468999999 9999999999999998 9999999861 11111 11 01110 022343 346
Q ss_pred HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 019993 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST 143 (332)
Q Consensus 82 ~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~ 143 (332)
+ +++++||+||++. .++....+.+.+.+.++++ ++++ +||.+.+-
T Consensus 78 ~-~~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~ 123 (292)
T PRK07530 78 L-EDLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS 123 (292)
T ss_pred H-HHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC
Confidence 5 5689999999994 3345666677778888874 6644 35555544
No 70
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.37 E-value=8.3e-06 Score=77.77 Aligned_cols=173 Identities=14% Similarity=0.045 Sum_probs=102.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhc-C--CCCCeEEEEeCC----CCHHhhcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-M--DTGAVVRGFLGQ----PQLENALTGM 89 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~-~--~~~~~v~~~~~~----~d~~~a~~~a 89 (332)
+++||.|+||+|++|++++..|+..++ +|+.+|.... .....++.. . .....+..+.+. .++.+.++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 457999999999999999999999887 9999997541 111111110 0 001123322211 1344567999
Q ss_pred cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEee
Q 019993 90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVT 166 (332)
Q Consensus 90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~ 166 (332)
|+||++|+....+ ..........|+....++.+.+++.... .+|.+|.. +..... ........-..+...+|.+
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~--~~~~~e~~~~~p~~~Y~~s 168 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHP--DLPKIEERIGRPLSPYAVT 168 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCC--CCCCCCCCCCCCCChhhHH
Confidence 9999998764322 2334556788999999999999877544 34444321 100000 0000011112234567877
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 167 ~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
.+...++...+++..+++...++ +.++|.+
T Consensus 169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 169 KYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 66666666666777777765553 5677864
No 71
>PLN02427 UDP-apiose/xylose synthase
Probab=98.31 E-value=5.7e-06 Score=79.94 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCC---CCCeEEEEe----CCCCHHhhcCCC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMD---TGAVVRGFL----GQPQLENALTGM 89 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~---~~~~v~~~~----~~~d~~~a~~~a 89 (332)
.++|||.|+||+|++|++++..|+.. ++ +|+.+|.+... ...+.... ....+..+. ...++.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 35689999999999999999999987 46 89999975421 11111110 011233221 122456778899
Q ss_pred cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
|+||++|+..... .....+.+..|+....++.+..++.. ..+|.+|
T Consensus 88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~S 135 (386)
T PLN02427 88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFS 135 (386)
T ss_pred CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 9999999864321 12234556778888888888887654 3555554
No 72
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.30 E-value=5.5e-06 Score=77.03 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=65.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHH---HHH-----hcCCC--------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT---ADI-----SHMDT--------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~---~dl-----~~~~~--------~~~v~~~~~~~d~ 82 (332)
.||+|||+ |.+|..+|..|+..|+ +|+++|+++. .... .++ ..... ...+.. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999999 9999999999999988 9999999871 1111 111 01000 112332 3467
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN 141 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~ 141 (332)
++++++||+||++. .++..+.+.+...+.++++ ++++ ++|...
T Consensus 76 ~~~~~~aD~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~il--~~~tSt 119 (288)
T PRK09260 76 KAAVADADLVIEAV--------------PEKLELKKAVFETADAHAPAECYI--ATNTST 119 (288)
T ss_pred HHhhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence 78999999999995 3345666677777888875 5543 344443
No 73
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.30 E-value=9.1e-06 Score=76.33 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=65.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHh---c---C-C----CCCeEEEEeCCCCHHhhcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS---H---M-D----TGAVVRGFLGQPQLENALT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~---~---~-~----~~~~v~~~~~~~d~~~a~~ 87 (332)
+||+|||+ |.+|+.++..|+..|+ +|+++|.++. ......+. . . . ....+.. ++++.++++
T Consensus 5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~ 78 (311)
T PRK06130 5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAVS 78 (311)
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHhc
Confidence 58999999 9999999999998888 9999999771 11111110 0 0 0 0011332 346677899
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST 143 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~ 143 (332)
+||+||++. .........+...+..+++ +.+ +.||...+.
T Consensus 79 ~aDlVi~av--------------~~~~~~~~~v~~~l~~~~~~~~i--i~s~tsg~~ 119 (311)
T PRK06130 79 GADLVIEAV--------------PEKLELKRDVFARLDGLCDPDTI--FATNTSGLP 119 (311)
T ss_pred cCCEEEEec--------------cCcHHHHHHHHHHHHHhCCCCcE--EEECCCCCC
Confidence 999999994 2334556666777777765 443 345555544
No 74
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.29 E-value=1.7e-05 Score=74.53 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=67.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHH--------HHhcCCC---------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~--------dl~~~~~---------~~~v~~~~~~~d~ 82 (332)
+||+|||+ |.+|++++..|+..|+ +|+++|.++. ..... .+..... ..++.. ++++
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~~ 76 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDSL 76 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECcH
Confidence 58999999 9999999999999998 9999999861 11110 1222111 112333 3577
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 143 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~ 143 (332)
.+++++||+|+++. ..+....+.+...+.+.+++..++ .||.....
T Consensus 77 ~~a~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~ 122 (308)
T PRK06129 77 ADAVADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSALL 122 (308)
T ss_pred HHhhCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence 78899999999985 333556666777787777655444 45544433
No 75
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.28 E-value=8.7e-06 Score=81.44 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHH--------Hh---cCCC--CCeEEEEeCCCCHHhh
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMDT--GAVVRGFLGQPQLENA 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~d--------l~---~~~~--~~~v~~~~~~~d~~~a 85 (332)
.+||+|||+ |.||+.+|..|+..|+ +|+++|+++.. ....+ +. .... ..++.. ++++.++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea 77 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEA 77 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHH
Confidence 368999999 9999999999999998 99999998721 11111 11 0000 012332 3467788
Q ss_pred cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 019993 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 144 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t 144 (332)
+++||+|+++. .++..+.+.+...+.++++... |+.||..++..
T Consensus 78 ~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 78 VAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred hcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 99999999984 4556777777778888886442 45677766554
No 76
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.27 E-value=1.3e-05 Score=74.71 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=67.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHH--------HHHhcCCC---------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT---------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~--------~dl~~~~~---------~~~v~~~~~~~d~ 82 (332)
+||+|||+ |.||+.+|..|+..|+ +|+++|.++.. ... .++..... ...+.. +++.
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~ 78 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTNL 78 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCCH
Confidence 58999999 9999999999999887 99999998611 111 11221110 011222 3454
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST 143 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~ 143 (332)
+++++||+||++. .++......+...+.++++ +++| +||...+-
T Consensus 79 -~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~ 123 (295)
T PLN02545 79 -EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS 123 (295)
T ss_pred -HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence 6789999999995 5557777788888888774 5543 46655543
No 77
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.24 E-value=2.5e-05 Score=74.02 Aligned_cols=175 Identities=17% Similarity=0.083 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe----CCCCHHhhcCCCcEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI 93 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiVi 93 (332)
+.++|.|+||+|++|++++..|+..|+ +|++++++. ......++........+..+. ...++.++++++|+||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 356899999999999999999999888 887776654 222211121111011222221 1123556788999999
Q ss_pred EcCCCCCCCCCC-hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCch------HHHHHHH------HHHhCCCCC
Q 019993 94 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNST------VPIAAEV------FKKAGTYDP 159 (332)
Q Consensus 94 ~~~g~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~------t~~~~~~------~~~~~~~~~ 159 (332)
++|+.......+ ..++...|+.....+.+.+.+...-..+|++|. .+... .....+- .... -.++
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~-~~~p 164 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS-EKPP 164 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh-cCCc
Confidence 998743211122 234567899999999999987643234444432 11110 0000000 0000 1233
Q ss_pred CceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
...+|.+.+..+++...+++..|++..-++ ..++|.+
T Consensus 165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 445677666666666677777777654443 4577764
No 78
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.22 E-value=3.1e-05 Score=73.71 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCC--CcEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLVI 93 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~--aDiVi 93 (332)
+.++|.|+||+|++|++++..|++.|+ +|+.+|++.. ......+........+.. .....++.+.+++ .|+||
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 457899999999999999999999887 8999997662 111111211110011111 1111233455554 59999
Q ss_pred EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 019993 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170 (332)
Q Consensus 94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~ 170 (332)
++++.+... ..+....+..|+.....+.+.+.+......+|++|.. ++...... ..+......++...+|.+....
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~-~~~~e~~~~~p~~~Y~~sK~~~ 159 (349)
T TIGR02622 81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWV-WGYRETDPLGGHDPYSSSKACA 159 (349)
T ss_pred ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCC-CCCccCCCCCCCCcchhHHHHH
Confidence 999854321 1233456678999999999998766533356665542 11100000 0000111223445677766666
Q ss_pred HHHHHHHHHHh
Q 019993 171 VRANTFVAEVL 181 (332)
Q Consensus 171 ~r~~~~la~~l 181 (332)
.++...+++.+
T Consensus 160 e~~~~~~~~~~ 170 (349)
T TIGR02622 160 ELVIASYRSSF 170 (349)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 79
>PLN02650 dihydroflavonol-4-reductase
Probab=98.22 E-value=2.9e-05 Score=74.02 Aligned_cols=177 Identities=15% Similarity=0.033 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEEEEe----CCCCHHhhcCCCcEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLV 92 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~----~~~d~~~a~~~aDiV 92 (332)
..++|.|+||+|++|++++..|+..|+ +|++++++. ......++... .....+..+. ....+.++++++|+|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 346899999999999999999999988 888887765 11111222211 1111222211 122456778899999
Q ss_pred EEcCCCCCCCCCC-hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch-----HHHHHHHHH---Hh--CCCCCCc
Q 019993 93 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIAAEVFK---KA--GTYDPKK 161 (332)
Q Consensus 93 i~~~g~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~-----t~~~~~~~~---~~--~~~~~~k 161 (332)
|++|+.......+ ....+..|+....++.+.+.+...-..+|++|.....- .+...+-.+ .. ...++..
T Consensus 82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 9998753221112 23566789999999999998765333555554321000 000000000 00 0000112
Q ss_pred eEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 019993 162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197 (332)
Q Consensus 162 viG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg 197 (332)
.+|.+.+...++...+++..|++..-++ +.++|...
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 198 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI 198 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence 4666666666666677777777654443 55778643
No 80
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.21 E-value=2.7e-05 Score=76.16 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=75.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC----------------CCCeEEEEeCCCCHHh
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN 84 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~ 84 (332)
|||+|||. |.||..+|..|+..|+ +|+++|+++.+ +.++.... ...++.. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999999 9999999999999998 89999997622 12222110 0112332 346678
Q ss_pred hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchHHHHHHHHHH
Q 019993 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK 153 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t~~~~~~~~~ 153 (332)
++++||+||++.+.|..... .-++..+....+.+.++. ++.+|+.. |-|.+..-.+...+..+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999887754321 123455555566666554 45555544 46666654443333333
No 81
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.20 E-value=3.4e-05 Score=72.27 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCC-CCCeEEEE----eCCCCHHhhcCCCcEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGF----LGQPQLENALTGMDLVI 93 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~-~~~~v~~~----~~~~d~~~a~~~aDiVi 93 (332)
.+||.|+||+|++|++++..|+..|+ +|++++++.. ......+.... ....+..+ .....+.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 36899999999999999999999998 8888877652 11122222111 01122221 11234667889999999
Q ss_pred EcCCCCCCCCCCh-hhhHhhhHHHHHHHHHHHHhh-CCCcEEEEe
Q 019993 94 IPAGVPRKPGMTR-DDLFNINAGIVRTLCEGIAKC-CPNATVNLI 136 (332)
Q Consensus 94 ~~~g~~~~~g~~r-~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~ 136 (332)
++|+......... .+.+..|+....++.+.+.+. ... .+|++
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~ 125 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT 125 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence 9987542211122 356678999999999998765 333 44444
No 82
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.19 E-value=2.1e-05 Score=76.22 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=70.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--------------CCCeEEEEeCCCCHHhhc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~a~ 86 (332)
|||+|||+ |+||..+|..++. |+ +|+.+|+++.+ +..+.... ...++. .+++..++.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~---~t~~~~~~~ 71 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFN---ATLDKNEAY 71 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEE---Eecchhhhh
Confidence 58999999 9999999987775 76 99999998721 11121110 011222 244566788
Q ss_pred CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCchHHH
Q 019993 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI 146 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~t~~ 146 (332)
++||+||++.+.|...... .-++..+++.++.+.+..|+.+||+- |-|.+..-.+
T Consensus 72 ~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred cCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence 9999999997766322111 12345555555666554455555444 6787766444
No 83
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.19 E-value=2.2e-05 Score=81.37 Aligned_cols=169 Identities=14% Similarity=0.043 Sum_probs=100.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC----HHhhcCCCcEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLV 92 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d----~~~a~~~aDiV 92 (332)
+.|||.|+||+|++|++++..|+.. ++ +|+.+|++... . .++... ..+..+.+. +| +.++++++|+|
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~V 386 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLGH---PRFHFVEGDISIHSEWIEYHIKKCDVV 386 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcCC---CceEEEeccccCcHHHHHHHhcCCCEE
Confidence 5689999999999999999999874 67 99999986521 1 111111 122221111 11 34578999999
Q ss_pred EEcCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH--HHHHHHHHHhCCCC---CCceEE
Q 019993 93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV--PIAAEVFKKAGTYD---PKKLLG 164 (332)
Q Consensus 93 i~~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t--~~~~~~~~~~~~~~---~~kviG 164 (332)
|++|+.... ......+.+..|+....++.+.++++. . .+|.+|. -+.... ....|-.......| +...+|
T Consensus 387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg 464 (660)
T PRK08125 387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYS 464 (660)
T ss_pred EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchH
Confidence 999875432 223345667889999999999999875 3 4444433 221100 00000000000001 223678
Q ss_pred eehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 165 ~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
.+.+...++...+++..|++...++ ..++|.+
T Consensus 465 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 465 VSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 8777677777777788787765554 4467764
No 84
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.18 E-value=1.7e-05 Score=78.20 Aligned_cols=169 Identities=12% Similarity=0.001 Sum_probs=95.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
.|||.|+||+|++|++++..|+..|+ +|+.+|... ........ .. ..++..+... -+..++.++|+||++|+
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~D-~~~~~l~~~D~ViHlAa 192 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRHD-VVEPILLEVDQIYHLAC 192 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEECC-ccChhhcCCCEEEEeee
Confidence 47999999999999999999999988 899998643 11111111 11 1233332211 12356789999999987
Q ss_pred CCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH--HHHHHHHHHh-CCCCCCceEEeehhhHH
Q 019993 98 VPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV--PIAAEVFKKA-GTYDPKKLLGVTMLDVV 171 (332)
Q Consensus 98 ~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t--~~~~~~~~~~-~~~~~~kviG~~~ld~~ 171 (332)
.... ...+..+.+..|+....++.+.+++.. ..+|++|. -+..-. ....+..+.. .-..+...++.+.....
T Consensus 193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE 270 (442)
T PLN02206 193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAE 270 (442)
T ss_pred ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHH
Confidence 5421 122345677899999999999998764 35555543 111000 0000000000 00111234565655555
Q ss_pred HHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 172 RANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 172 r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
++...+.+..+++..-++ ..++|.+
T Consensus 271 ~~~~~y~~~~g~~~~ilR~~~vyGp~ 296 (442)
T PLN02206 271 TLTMDYHRGANVEVRIARIFNTYGPR 296 (442)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCC
Confidence 555555666666543332 3466754
No 85
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.16 E-value=2.8e-05 Score=72.75 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHH--HHHHHhcCCCCCeEEE----EeCCCCHHhhcCCCc
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAVVRG----FLGQPQLENALTGMD 90 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~--~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD 90 (332)
..++|+|+||+||+|+.++..|+++|+ +|+-.=++. .+. +..+|.... .++.. ......+.+|+++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 457999999999999999999999999 666554444 222 344454322 12222 112345789999999
Q ss_pred EEEEcCCCCCCCCC-ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 91 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 91 iVi~~~g~~~~~g~-~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
.|+++|....-... ...+++.-.++...++.+.+.+.. ...=+++|+..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~ 130 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSST 130 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccH
Confidence 99999864322222 244678889999999999999887 22223454433
No 86
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.12 E-value=2.8e-05 Score=68.13 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
+|+|+|+|+ |++|++++..+...++ ||.+-..+..+.....-... .+.+.. . ..++|.+.||+||++. |
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~---~-~~~dA~~~aDVVvLAV--P 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG---G-SNEDAAALADVVVLAV--P 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc---C-ChHHHHhcCCEEEEec--c
Confidence 478999999 9999999999999998 98888776532222211111 233443 2 2368999999999994 3
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~ 141 (332)
.+.+.++.+.+...-.+-+||=.|||.+
T Consensus 70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~~ 97 (211)
T COG2085 70 --------------FEAIPDVLAELRDALGGKIVIDATNPIE 97 (211)
T ss_pred --------------HHHHHhHHHHHHHHhCCeEEEecCCCcc
Confidence 3344455555554444677888899953
No 87
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.11 E-value=4.5e-05 Score=70.85 Aligned_cols=167 Identities=15% Similarity=0.053 Sum_probs=95.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEE----eCCCCHHhhcCC--CcEE
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGF----LGQPQLENALTG--MDLV 92 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~--aDiV 92 (332)
||.|+||+|++|+.++..|+..+...+|+++|.... .....++... ..+..+ ....++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999999988763338999986431 1111222211 122221 112234566776 8999
Q ss_pred EEcCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCc----hHHHHHHHHHHhCCCCCCceEEe
Q 019993 93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNS----TVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 93 i~~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~----~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
|.+++.... .......++..|+.....+++.+.+...+..++.+|.. +.. .... .......+...+|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence 999875421 11233456678999999999998877555556655431 100 0000 01111233345666
Q ss_pred ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 166 ~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
+.....++...+++..+++..-++ ..++|..
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 655556666666777776544443 3456643
No 88
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.09 E-value=1.1e-05 Score=77.84 Aligned_cols=172 Identities=14% Similarity=0.052 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..|||+|+||+|++|++++..|...|+ +|+.+|+... .. +........+.. ......+..+++++|+||++|
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~-~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKN-EH---MSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccc-cc---cccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 347999999999999999999999888 9999997531 10 000000011111 100112345678999999998
Q ss_pred CCCCCCC---CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHH---HHHHHh-CCCCCCceEEeehh
Q 019993 97 GVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAA---EVFKKA-GTYDPKKLLGVTML 168 (332)
Q Consensus 97 g~~~~~g---~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~---~~~~~~-~~~~~~kviG~~~l 168 (332)
+.....+ ......+..|+....++++.+.+...+.+ |.+|.. +.--..... .+.... ..+.+...+|.+..
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~ 172 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL 172 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHH
Confidence 6432111 11223456799999999999987755544 444332 111000000 000010 01234456777666
Q ss_pred hHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 019993 169 DVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197 (332)
Q Consensus 169 d~~r~~~~la~~l~v~~~~v~-~~v~G~hg 197 (332)
...++...+++..|++..-++ ..++|.++
T Consensus 173 ~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 173 ATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 666665666777777654443 45777654
No 89
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.09 E-value=2.2e-05 Score=73.85 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=70.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
|||.|+||+|++|++++..|+..|+ +|+.++++.... ..+.+.. ..+.. .....++.++++++|+||.+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~--v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG--AELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC--CEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 6899999999999999999999888 899998764211 1122111 11111 11123467889999999998753
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
.. ....++...|.....++++.+++..-+ .+|.+|
T Consensus 75 ~~---~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 75 RP---SDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CC---CCccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 21 112234566888888999998877644 444444
No 90
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.09 E-value=3.2e-05 Score=72.33 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc--CC--C------CCeEEEEeCCCCHHhhcCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--T------GAVVRGFLGQPQLENALTGM 89 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~~--~------~~~v~~~~~~~d~~~a~~~a 89 (332)
++||+|+|| |.-|+++|..|+.+++ +|.|..+++. .+.++.. .. + ++.+.. ++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence 469999999 9999999999999997 8999998762 2222322 22 1 223333 67999999999
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec---CCCCchHHHHHHHHHHhCCCCCCceEEe
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS---NPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t---NP~~~~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
|+|++.. | ...++++++++..+- ++.+++.+| .|-.. .+++++++.. +|.++ ++.
T Consensus 73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~--l~~~~-~~v 131 (329)
T COG0240 73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE--LPDNP-IAV 131 (329)
T ss_pred CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH--cCCCe-EEE
Confidence 9999984 3 456677777776444 577777775 33322 2235666665 44444 444
No 91
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.08 E-value=3e-05 Score=73.25 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH--HHHHHhcCCCCCeEEEE----eCCCCHHhhcCCCcEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF----LGQPQLENALTGMDLVI 93 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiVi 93 (332)
.++|.|+||+|++|++++..|+..+...+|+++|.+.... ...++.. ..+..+ ....++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999998875323899999765221 1112211 122221 11123556788999999
Q ss_pred EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
++||....+ ..+..+.+..|+.....+.+.+.+.... .+|++|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2234567788999999999999876433 455554
No 92
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=3.9e-05 Score=70.51 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=106.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhc--CCCcEEEEc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENAL--TGMDLVIIP 95 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~--~~aDiVi~~ 95 (332)
|+|.|+|++|++||+.+..|++.|+ +++.+|... ....+...+ ..+ ..+++. ..-+.+.| ..-|.||..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~-~~f~~gDi~D---~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQ-FKFYEGDLLD---RALLTAVFEENKIDAVVHF 74 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhcc-CceEEecccc---HHHHHHHHHhcCCCEEEEC
Confidence 6899999999999999999999999 999999865 122222111 110 111111 11122223 478999999
Q ss_pred CCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-----CCCCchHHHHHHHHHHhCCCCCCceEEeehh
Q 019993 96 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-----NPVNSTVPIAAEVFKKAGTYDPKKLLGVTML 168 (332)
Q Consensus 96 ~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-----NP~~~~t~~~~~~~~~~~~~~~~kviG~~~l 168 (332)
|+...-+. +..+.+...|+-....+.+.|.++..+.+|.-.| +|..+- + ....-..|.+-+|-|.|
T Consensus 75 Aa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~P--I-----~E~~~~~p~NPYG~sKl 147 (329)
T COG1087 75 AASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSP--I-----SETSPLAPINPYGRSKL 147 (329)
T ss_pred ccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcc--c-----CCCCCCCCCCcchhHHH
Confidence 87543221 3457788999999999999999999877554432 443311 1 11122346678999988
Q ss_pred hHHHHHHHHHHHhCCCCCCC-ceeEEEec
Q 019993 169 DVVRANTFVAEVLGLDPRDV-DVPVVGGH 196 (332)
Q Consensus 169 d~~r~~~~la~~l~v~~~~v-~~~v~G~h 196 (332)
..++.-+.+++..+....-+ +.-+.|-|
T Consensus 148 m~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 148 MSEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 88888889988888554433 34455544
No 93
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.07 E-value=0.0001 Score=72.34 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC------------CCeEEEEeCCCCHHhh
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENA 85 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~a 85 (332)
.++|||+|||- |+||..+|..|+. ++ +|+.||+++. .+..+..... ...+.. +++. ++
T Consensus 4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~ 73 (425)
T PRK15182 4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSEI-EK 73 (425)
T ss_pred CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence 45799999999 9999999999877 46 9999999872 2223332211 012222 3454 57
Q ss_pred cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHHH
Q 019993 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPI 146 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~~ 146 (332)
+++||++|++.+.|..... ..++..+....+.|.++.+ +.+||+- |.|.+..-.+
T Consensus 74 ~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~ 130 (425)
T PRK15182 74 IKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEE 130 (425)
T ss_pred HcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHH
Confidence 8999999999988864322 1224444444555555553 4444443 6777665433
No 94
>PLN02214 cinnamoyl-CoA reductase
Probab=98.05 E-value=7.6e-05 Score=71.04 Aligned_cols=169 Identities=15% Similarity=0.055 Sum_probs=97.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCCCCCeEEEEe----CCCCHHhhcCCCcEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL----GQPQLENALTGMDLV 92 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiV 92 (332)
.++|.|+||+|++|++++..|+..|+ +|+.++++... .....+... ...+..+. ...++.++++++|+|
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 45899999999999999999999988 88888876421 111222211 11222211 123466788999999
Q ss_pred EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC--CCchH-----HHHHHHHHHhCCC--CCCceE
Q 019993 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP--VNSTV-----PIAAEVFKKAGTY--DPKKLL 163 (332)
Q Consensus 93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP--~~~~t-----~~~~~~~~~~~~~--~~~kvi 163 (332)
|++|+... ....+.+..|+.....+.+.+.+.... .+|++|.- +.... ....|-.+....+ .+...+
T Consensus 86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y 161 (342)
T PLN02214 86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY 161 (342)
T ss_pred EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence 99987542 234556778999999999999876544 34444321 11000 0000100000000 012235
Q ss_pred EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
|.+.....++...+++..|++..-++ ..++|.+
T Consensus 162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~ 195 (342)
T PLN02214 162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPP 195 (342)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence 55555555666666666676654443 5677864
No 95
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.03 E-value=4.8e-05 Score=74.47 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC----------------CCeEEEEeCCCCH
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQL 82 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~ 82 (332)
..+||+|||. |+||..+|..|+..|+ +|+.+|+++.+-.. +..... ...+.. +++
T Consensus 2 ~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~- 72 (415)
T PRK11064 2 SFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT- 72 (415)
T ss_pred CccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc-
Confidence 3579999999 9999999999999998 99999998722111 221110 011221 222
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHHH
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPI 146 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~~ 146 (332)
+++||+||++...|..... ..++..+.+.++.+.++.+ +.+||.. |.|.+..-.+
T Consensus 73 ---~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 73 ---PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred ---cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 3589999999887754332 2235556666677776664 5555554 5677765444
No 96
>PRK06194 hypothetical protein; Provisional
Probab=98.01 E-value=0.00011 Score=67.62 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=90.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------ 87 (332)
.++|.|+||+|++|++++..|+..|. +|+++|.+. ......++... ...+..+. .-+| ++++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999988 899999875 23333344322 12333221 1123 223333
Q ss_pred -CCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHH----HHHHHHhhCCC-----cEEEEecCCCCchHHHHHHHH
Q 019993 88 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRT----LCEGIAKCCPN-----ATVNLISNPVNSTVPIAAEVF 151 (332)
Q Consensus 88 -~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~----i~~~i~~~~p~-----a~viv~tNP~~~~t~~~~~~~ 151 (332)
..|+||+++|..... ..+. ...+..|+..... +.+.+.+.+.+ +.++++|......
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 153 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL-------- 153 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--------
Confidence 469999999875321 1121 2234455554444 44445554432 5566655432211
Q ss_pred HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 019993 152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (332)
Q Consensus 152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G 194 (332)
+.|..-.++.+......+...++..++.....+++..+.
T Consensus 154 ----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~ 192 (287)
T PRK06194 154 ----APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC 192 (287)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 223334466655455566677777777665566655554
No 97
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.99 E-value=6.5e-05 Score=71.42 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=92.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-----CCHHhhcCCCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVi~ 94 (332)
|||.|+||+|++|++++..|+.. ++ +|+.+|.... ...++... ..+..+... ..+.++++++|+||+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 68999999999999999999875 56 8999996531 11122111 123322111 123356789999999
Q ss_pred cCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCch---HHHHHHHHHHhCCC------CCCce
Q 019993 95 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNST---VPIAAEVFKKAGTY------DPKKL 162 (332)
Q Consensus 95 ~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~---t~~~~~~~~~~~~~------~~~kv 162 (332)
+++.... ...+.......|+....++++.+.+.. ..+|.+|.. +... ..+ . ...+-+ ++...
T Consensus 75 ~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~-~---ee~~~~~~~~~~~p~~~ 148 (347)
T PRK11908 75 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEF-D---PEASPLVYGPINKPRWI 148 (347)
T ss_pred CcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCc-C---ccccccccCcCCCccch
Confidence 9875322 223344456778888889999888754 355555432 1000 000 0 000000 12234
Q ss_pred EEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 163 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 163 iG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
+|.+.....++...+++..+++..-++ +.++|.+
T Consensus 149 Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~ 183 (347)
T PRK11908 149 YACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG 183 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence 666555555555556666677655554 4567754
No 98
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.97 E-value=7.4e-05 Score=70.34 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCC------CCCeEEEEeCCCCHHhhcCCCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~------~~~~v~~~~~~~d~~~a~~~aDi 91 (332)
+|||+|||+ |.+|+.++..|+..++ +|.++|+++. +....+..+.. ....+.. +++..++++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 369999999 9999999999999888 8999998752 11111100000 0012222 2466678899999
Q ss_pred EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 019993 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 141 (332)
Q Consensus 92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~ 141 (332)
||++... ..+.++++.+..+. |+.++|..+|-++
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 9999521 23455555666654 5677777776554
No 99
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.96 E-value=6e-05 Score=70.52 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=73.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
|||.|+||+|++|+.++..|+..|+ +|+++|++.... .++.+... ..+.. .....++.++++++|.||.+++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 5899999999999999999999887 999999865211 11111110 11111 111123567788999999998653
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
.............|+.....+++.+.+..-. .+|+.|
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 2223345566778899999999988876433 344444
No 100
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.95 E-value=5.1e-05 Score=70.45 Aligned_cols=169 Identities=17% Similarity=0.102 Sum_probs=98.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC-cEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM-DLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a-DiVi~~~g~~ 99 (332)
|+|.|+||+|++|++++..|++.|+ +|+.+|.......... .+... ...... ......+.+++. |.||++++..
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~-~~~d~~-~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEF-VVLDLT-DRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccce-eeeccc-chHHHHHHHhcCCCEEEEccccC
Confidence 3599999999999999999999988 9999998652111110 11100 000100 011234556777 9999998876
Q ss_pred CCCCCCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH---HHHHHHHHHhCCCCCCceEEeehhhHHH
Q 019993 100 RKPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV---PIAAEVFKKAGTYDPKKLLGVTMLDVVR 172 (332)
Q Consensus 100 ~~~g~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t---~~~~~~~~~~~~~~~~kviG~~~ld~~r 172 (332)
..++..+ .++...|+...+++++..++ +.-..++..|. .+..-. ..+.+-. ..-.| ...+|.+.+..++
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss~~~~~~~~~~~~~~E~~--~~~~p-~~~Yg~sK~~~E~ 151 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASSVSVVYGDPPPLPIDEDL--GPPRP-LNPYGVSKLAAEQ 151 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCCCceECCCCCCCCccccc--CCCCC-CCHHHHHHHHHHH
Confidence 5444322 35778999999999999998 33334444332 111100 0001100 01111 1246777766666
Q ss_pred HHHHHHHHhCCCCCCCc-eeEEEecCC
Q 019993 173 ANTFVAEVLGLDPRDVD-VPVVGGHAG 198 (332)
Q Consensus 173 ~~~~la~~l~v~~~~v~-~~v~G~hg~ 198 (332)
.....++..+++..-++ ..++|....
T Consensus 152 ~~~~~~~~~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 152 LLRAYARLYGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred HHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence 66666666677766665 468876544
No 101
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.93 E-value=0.00025 Score=66.59 Aligned_cols=175 Identities=17% Similarity=0.068 Sum_probs=97.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhc-CCCCCeEEEE----eCCCCHHhhcCCCcEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH-MDTGAVVRGF----LGQPQLENALTGMDLVI 93 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~-~~~~~~v~~~----~~~~d~~~a~~~aDiVi 93 (332)
.++|.|+||+|++|++++..|+..|+ +|++++++... .....+.. ......+..+ ....++.++++++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 36899999999999999999999988 88887766521 11111111 1111222221 11234557788999999
Q ss_pred EcCCCCCCC-C-CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHH---H-HHHHHHhCCC------CCCc
Q 019993 94 IPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI---A-AEVFKKAGTY------DPKK 161 (332)
Q Consensus 94 ~~~g~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~---~-~~~~~~~~~~------~~~k 161 (332)
++||..... . ......+..|+.....+.+.+.++.....||++|.-....... . ...+....-. ++..
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 162 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ 162 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence 999854211 1 1224456789999999999887754223455543311100000 0 0000000001 1123
Q ss_pred eEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 162 viG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
.+|.+.+...++...+++..|++..-++ +.++|..
T Consensus 163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 5677766666676667777776544442 5567754
No 102
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.93 E-value=0.00012 Score=69.52 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=98.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE----EeCCCCHHhhcC--CCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENALT--GMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~--~aDiVi~ 94 (332)
|||.|+||+|++|++++..|+..|.. .++.+|.....+....+.+......+.. .....++.++++ ++|+||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC-eEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 58999999999999999999888752 4666776431111111211110112221 111123345564 4799999
Q ss_pred cCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhC-------CC-cEEEEecCC-CCchHHHHHH--------HHHHhC
Q 019993 95 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNP-VNSTVPIAAE--------VFKKAG 155 (332)
Q Consensus 95 ~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~-------p~-a~viv~tNP-~~~~t~~~~~--------~~~~~~ 155 (332)
+|+.... ......+++..|+.....+++.+.++. .. ..+|.+|.. +.......-. .+....
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~ 159 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT 159 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence 9986421 112345677899999999999998752 11 244444322 1110000000 000011
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg 197 (332)
.+.+...+|.+.....++...+++.++++.-.++ ..++|.+.
T Consensus 160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH 202 (352)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence 2334567788777777777777788887654443 45778653
No 103
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.93 E-value=2.1e-05 Score=60.50 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=59.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-ccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
||+|||+ |.+|++++..|...+ ...+|.++ ++++. ...++.... ...+. +.+..+++++||+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~~~~~----~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-GVQAT----ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-TTEEE----SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-ccccc----cCChHHhhccCCEEEEEEC--
Confidence 7999999 999999999999888 23488866 87652 222222211 11222 2245789999999999952
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP 139 (332)
-..+.++++.+....++..+|-++||
T Consensus 71 --------------p~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --------------PQQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --------------GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --------------HHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 12234556666444567777777775
No 104
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.93 E-value=0.00016 Score=68.58 Aligned_cols=159 Identities=13% Similarity=0.011 Sum_probs=90.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhc-C--CCCCeEEEEe-CCCC---HHhhcCC--
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M--DTGAVVRGFL-GQPQ---LENALTG-- 88 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~-~--~~~~~v~~~~-~~~d---~~~a~~~-- 88 (332)
++|.|+||+|++|++++..|+..|+ +|+++|++.. ......+.. . .....+..+. .-+| +.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999888 9999997641 111122210 0 0011222211 1122 3455664
Q ss_pred CcEEEEcCCCCCCC-C-CChhhhHhhhHHHHHHHHHHHHhhC-CC-cEEEEecC-CCCch-HHHHHHHHHHhCCCCCCce
Q 019993 89 MDLVIIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCC-PN-ATVNLISN-PVNST-VPIAAEVFKKAGTYDPKKL 162 (332)
Q Consensus 89 aDiVi~~~g~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~-p~-a~viv~tN-P~~~~-t~~~~~~~~~~~~~~~~kv 162 (332)
.|+||++|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|. -+..- ... .......+.+...
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~---~~~E~~~~~p~~~ 155 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI---PQNETTPFYPRSP 155 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC---CCCCCCCCCCCCh
Confidence 59999999864322 1 1123344567778889999888765 22 34554432 11110 000 0001112334556
Q ss_pred EEeehhhHHHHHHHHHHHhCCC
Q 019993 163 LGVTMLDVVRANTFVAEVLGLD 184 (332)
Q Consensus 163 iG~~~ld~~r~~~~la~~l~v~ 184 (332)
+|.+.+...++...+++.++++
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~ 177 (343)
T TIGR01472 156 YAAAKLYAHWITVNYREAYGLF 177 (343)
T ss_pred hHHHHHHHHHHHHHHHHHhCCc
Confidence 7777777777777777777765
No 105
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.92 E-value=0.00017 Score=68.60 Aligned_cols=176 Identities=16% Similarity=0.098 Sum_probs=97.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE----EeCCCCHHhhcCC--CcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENALTG--MDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~--aDiVi~ 94 (332)
+||.|+||+|++|++++..|+..|.. .++++|..+..+....+.+......+.. +....++.+++++ .|+||+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC-EEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 58999999999999999999988752 4667776532111111211100112221 1111234455664 899999
Q ss_pred cCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhC-------CC-cEEEEecCC-CCchHHHHHHHHHHhCCCCCCceE
Q 019993 95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLL 163 (332)
Q Consensus 95 ~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~-------p~-a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kvi 163 (332)
+||..... ..........|+.....+++.+.++. +. ..+|.+|.. +.....-....+.......+...+
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y 160 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY 160 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence 99864321 12235567789999999999987652 12 245555432 111000000000001112234457
Q ss_pred EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 019993 164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197 (332)
Q Consensus 164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg 197 (332)
|.+.+...++...+++.++++..-++ ..++|.+.
T Consensus 161 ~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 161 SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 77777777777777888887654443 56677653
No 106
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.92 E-value=0.00011 Score=74.02 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=73.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcC-----CC--CCeEEEEe----CCCCHH
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-----DT--GAVVRGFL----GQPQLE 83 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~-----~~--~~~v~~~~----~~~d~~ 83 (332)
.++.+.|.|+||+|++|+.++..|+..|+ +|++++++.. ......+.+. .. ..++..+. ...++.
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 33446799999999999999999999888 8999988762 2222222210 00 01222211 112345
Q ss_pred hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+++.++|+||+++|............+..|......+++.+.+..-. .||++|
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 67899999999988653221122233456778888888888766433 455554
No 107
>PLN02778 3,5-epimerase/4-reductase
Probab=97.92 E-value=0.00018 Score=67.23 Aligned_cols=96 Identities=22% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--CCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVi~~~ 96 (332)
+.|||.|+||+|++|++++..|...|+ +|++...+... .. .+...+ .++|+||++|
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~-----~~---------------~v~~~l~~~~~D~ViH~A 65 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLEN-----RA---------------SLEADIDAVKPTHVFNAA 65 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCC-----HH---------------HHHHHHHhcCCCEEEECC
Confidence 458999999999999999999999887 77654322100 00 011112 2689999999
Q ss_pred CCCCCCC-----CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 97 GVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 97 g~~~~~g-----~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+....+. ....+....|+....++++.+++.... ++++.|
T Consensus 66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS 110 (298)
T PLN02778 66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYAT 110 (298)
T ss_pred cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEec
Confidence 8653222 234567789999999999999887543 344333
No 108
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.88 E-value=0.00014 Score=69.38 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=94.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH--HHHHHhcCCCCCeEEEEeC----CCCHHhhcCCCcEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI 93 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVi 93 (332)
.|||.|+||+|++|++++..|+..|+ +|++++.+.... ...++.. ...+..+.. ..++.+++++.|+||
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 47999999999999999999999888 888887654211 1112211 122332211 122456678899999
Q ss_pred EcCCCCCCC---C-CChhhh-----HhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH-------HHHHHHH---HH
Q 019993 94 IPAGVPRKP---G-MTRDDL-----FNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV-------PIAAEVF---KK 153 (332)
Q Consensus 94 ~~~g~~~~~---g-~~r~~~-----~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t-------~~~~~~~---~~ 153 (332)
++|+..... . .+..+. +..|+.....+.+.+.++..-..+|++|. -+.... ....+-. ..
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~ 164 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPID 164 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHH
Confidence 999864321 1 112222 23345778888888876632234555443 221100 0000000 00
Q ss_pred --hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 154 --AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 154 --~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
....++.-.+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus 165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210 (353)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence 000112235777777777777777777776544442 4566754
No 109
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.87 E-value=0.00011 Score=69.71 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC------CCeE----EEEeCCCCHHhhcCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------GAVV----RGFLGQPQLENALTGM 89 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~------~~~v----~~~~~~~d~~~a~~~a 89 (332)
+|||+|||+ |.||+.+|..|...|+ +|.++|+++.. ..+..... .... ..+..+++. ++++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG---DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA 74 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH---HHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence 479999999 9999999999999988 89999975411 11111110 0000 001113454 678999
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCch
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 143 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~ 143 (332)
|+||++...+. ..++++.+..+. ++.+|+..+|..+..
T Consensus 75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99999863221 123345555554 567777778887654
No 110
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.87 E-value=0.00014 Score=68.54 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=70.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC--CCcEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV 92 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~--~aDiV 92 (332)
|||.|+||+|++|++++..|+..|+ +|+++|... .......+.+.. ...+..+. .-+| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 6899999999999999999999887 899998643 111111122111 11111111 1122 334454 68999
Q ss_pred EEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 93 i~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
|++++..... .....+.+..|+.....+++.+++.... .+|.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 9998764321 1234567788999999999998876433 344444
No 111
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.86 E-value=0.0002 Score=66.65 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=63.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC---CCeEEE-EeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GAVVRG-FLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---~~~v~~-~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+|+|+ |.+|+.++..|.+.|+ +|.++|++...- ..+..... ...... ...+++..+ .+++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHL--DALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHH--HHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 68999999 9999999999998887 999999864211 11111110 011110 111334444 49999999995
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV 144 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t 144 (332)
... .+.++++.+..+. ++..||...|.++..-
T Consensus 75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 311 1334455555443 5678888899887653
No 112
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.86 E-value=0.00011 Score=62.51 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
++||++||. |.+|+.++..|+..|+ +|+.||++. ....++.+.. .... .++.+++++||+|+.+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v--- 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV--- 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S---
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec---
Confidence 479999999 9999999999999999 999999864 3333344332 3332 35689999999999983
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHH--HHhhC-CCcEEEEec
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEG--IAKCC-PNATVNLIS 137 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~--i~~~~-p~a~viv~t 137 (332)
.+-+.++++... +.... ++.++|..|
T Consensus 66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 66 ------------PDDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred ------------ccchhhhhhhhhhHHhhccccceEEEecC
Confidence 234455666665 55555 444444443
No 113
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.85 E-value=0.00044 Score=64.91 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=70.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEEEEe----CCCCHHhhcCCCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~----~~~d~~~a~~~aDiVi~ 94 (332)
++|.|+||+|++|++++..|+..|+ +|++...+. .......+... .....+..+. ....+.++++++|+||+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 5899999999999999999999888 787655444 21222222211 1112233221 12345677899999999
Q ss_pred cCCCCCCC-CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 95 ~~g~~~~~-g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+|+..... .....+++..|+.....+.+.+.+...-..||.+|
T Consensus 84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S 127 (322)
T PLN02986 84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS 127 (322)
T ss_pred eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 98753211 11223456778999999999887653212444443
No 114
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.85 E-value=0.00013 Score=68.63 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
.|||+|||+ |.+|++++..|...|+ +|.++|+++. .++.+++++||+||++. |
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v--p 56 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV--S 56 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--C
Confidence 479999999 9999999999999998 9999998641 24567889999999984 2
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhh--CCCcEEEEecC
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN 138 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~--~p~a~viv~tN 138 (332)
...++++++.+..+ .++.+++..|+
T Consensus 57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 57 --------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred --------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 13455666666643 35677777776
No 115
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.85 E-value=4.6e-05 Score=69.35 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCe--EEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV--VRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~--v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
..++||+|+||+|||||+++..|+..|+ +|+..|... .+....+.|....+. +.... --..-++.+|-|+..
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~hd---v~~pl~~evD~IyhL 98 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIRHD---VVEPLLKEVDQIYHL 98 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEEee---chhHHHHHhhhhhhh
Confidence 4468999999999999999999999997 999999764 222233344432232 33221 123568999999998
Q ss_pred CCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 96 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 96 ~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
|.....++ ....+.+..|.-.........++.+ +.++.+|
T Consensus 99 Aapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS 140 (350)
T KOG1429|consen 99 AAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS 140 (350)
T ss_pred ccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence 75433322 3445556666666666666665554 5555553
No 116
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.83 E-value=0.00019 Score=68.90 Aligned_cols=97 Identities=15% Similarity=0.271 Sum_probs=65.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEccCCc---HHHHHHHhcC--C--C------CCeEEEEeCCCCH
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--D--T------GAVVRGFLGQPQL 82 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~~---~~~~~dl~~~--~--~------~~~v~~~~~~~d~ 82 (332)
+||+|||+ |..|+++|..|..++. ..+|.|+.+++. +..+.++.+. . + +..+.. ++|+
T Consensus 12 ~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~---tsdl 87 (365)
T PTZ00345 12 LKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA---VSDL 87 (365)
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE---ecCH
Confidence 69999999 9999999999998761 238888887762 2334444422 1 1 223443 4578
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh--hCC-CcEEEEec
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CCP-NATVNLIS 137 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~--~~p-~a~viv~t 137 (332)
.+++++||+||++. | ...++++++.+.. +-+ +.++|.++
T Consensus 88 ~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 88 KEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred HHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 88999999999984 2 4556777777776 433 44555553
No 117
>PLN02583 cinnamoyl-CoA reductase
Probab=97.81 E-value=0.00044 Score=64.44 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=71.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH----HHHHHHhcCCCCCeEEEE----eCCCCHHhhcCCCcEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGF----LGQPQLENALTGMDLV 92 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiV 92 (332)
++|+|+||+|++|++++..|+..|+ +|++++++... ....++... ...+..+ ....++.+++.++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4799999999999999999999998 88888764311 111222111 1122221 1123456789999999
Q ss_pred EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+..++.+........+.+..|+.....+.+.+.+...-..||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S 127 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS 127 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 987654322111234567889999999999988763223444443
No 118
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.80 E-value=0.00033 Score=65.37 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=72.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC-----CCeEE-EEeCCCCHHhhcCCCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVR-GFLGQPQLENALTGMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-----~~~v~-~~~~~~d~~~a~~~aDiVi~ 94 (332)
|||+|+|+ |.+|..++..|...|+ +|.++++ +.. ...+.+... ..... .....++.+++.+++|+||+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKR--AKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHH--HHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 68999999 9999999999999887 8999998 411 111221110 01111 00012355555689999999
Q ss_pred cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE-eehhh
Q 019993 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTMLD 169 (332)
Q Consensus 95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG-~~~ld 169 (332)
+...+ .+.++++.+..+. ++..|+...|.++.... +... +|..++++ ++...
T Consensus 75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~ 128 (305)
T PRK12921 75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS 128 (305)
T ss_pred Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence 85322 1334555555544 56677778898875532 2333 56667764 44433
No 119
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.80 E-value=0.00027 Score=60.57 Aligned_cols=92 Identities=24% Similarity=0.286 Sum_probs=64.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcCCCcEEEEcCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTGMDLVIIPAGV 98 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~aDiVi~~~g~ 98 (332)
|+|+||+|++|+.++..|+..++ +|+++-+++.+. .+ ...+..+.. .. ++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~--~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKA--ED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGH--HH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhc--cc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999997 999998775321 11 123332221 12 356889999999999865
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~ 136 (332)
+.+ ....++.+.+.+++.... .++++
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~ 96 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYL 96 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceee
Confidence 533 277788888888876544 34443
No 120
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.79 E-value=0.00038 Score=72.27 Aligned_cols=181 Identities=15% Similarity=0.022 Sum_probs=98.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc--CCCc
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMD 90 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--~~aD 90 (332)
+.+++||.|+||+|++|++++..|+..+...+|+.+|..........+........+..+.. -+| +...+ .++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 45678999999999999999999988744348999997531111111111111123332221 122 12222 6899
Q ss_pred EEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHH-HHHHHhCCCCCCceEEee
Q 019993 91 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAA-EVFKKAGTYDPKKLLGVT 166 (332)
Q Consensus 91 iVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~-~~~~~~~~~~~~kviG~~ 166 (332)
+||++|+...... ....++...|+.....+++.+++...-..+|.+|.- +.-...--. .-........+...+|.+
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s 162 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT 162 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence 9999998653211 123456678999999999999877533345555431 100000000 000000011133456666
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 019993 167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197 (332)
Q Consensus 167 ~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg 197 (332)
.+..+++...+++..+++..-++ ..++|.+.
T Consensus 163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ 194 (668)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence 66666666666666676644443 55677553
No 121
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.79 E-value=0.0002 Score=67.68 Aligned_cols=98 Identities=18% Similarity=0.384 Sum_probs=64.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc----CC------CCCeEEEEeCCCCHHhhc-CCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TGAVVRGFLGQPQLENAL-TGM 89 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~----~~------~~~~v~~~~~~~d~~~a~-~~a 89 (332)
|||+|||| |.+|+.++..|.+.++ +|.++++++. .+..+.. .. ....++. ++|+.+++ .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence 68999999 9999999999999887 8999998652 2222221 10 1112333 34666776 589
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh-h-CCCcEEEEecCCCCc
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNS 142 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~-~-~p~a~viv~tNP~~~ 142 (332)
|+||++.. ...+.++++.+.. + .++..++..+|=.+.
T Consensus 73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999841 2334555556654 4 356667777776643
No 122
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.77 E-value=0.00023 Score=67.81 Aligned_cols=96 Identities=21% Similarity=0.357 Sum_probs=63.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEccCC---cHHHHHHHh--cCC--C------CCeEEEEeCCCCH
Q 019993 22 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------GAVVRGFLGQPQL 82 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~------~~~ei~L~D~~~---~~~~~~dl~--~~~--~------~~~v~~~~~~~d~ 82 (332)
||+|||+ |..|+++|..|..++ +..+|.|+.+++ -......+. |.. . +..+.. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 6999999 999999999999877 223999998844 122333332 211 1 123343 4688
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 019993 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS 137 (332)
Q Consensus 83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~t 137 (332)
++++++||+||++. | ...++++++.+..+-+ +..+|.+|
T Consensus 77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 89999999999984 3 4556667777766543 44555554
No 123
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.77 E-value=0.0002 Score=68.29 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC----CC-------CCeEEEEeCCCCHHhhcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------GAVVRGFLGQPQLENALT 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----~~-------~~~v~~~~~~~d~~~a~~ 87 (332)
++|||+|+|+ |.+|+.++..|...+ +++++..++. .+.++... .. ...+.. ++|+.++++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~ 76 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN 76 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence 4589999999 999999999999877 3567766542 22222211 01 112332 457778899
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 142 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~ 142 (332)
++|+||++. | ...++++++.+..+. ++..+|.++|-.+.
T Consensus 77 ~aDlVilav--p--------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 77 CADVVVMGV--P--------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred cCCEEEEEe--C--------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 999999984 1 335666677776654 56678888886654
No 124
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=97.77 E-value=0.00019 Score=67.94 Aligned_cols=164 Identities=15% Similarity=0.043 Sum_probs=91.1
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcC--CCCCeEEEE----eCCCCHHhhc
Q 019993 16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTGAVVRGF----LGQPQLENAL 86 (332)
Q Consensus 16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~--~~~~~v~~~----~~~~d~~~a~ 86 (332)
+..+.++|.|+||+|++|++++..|+..|+ +|+++|..+. ......+... .....+..+ ....++.+++
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL 79 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence 334557999999999999999999999988 8999987541 1111222110 001122211 1112334556
Q ss_pred CC--CcEEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCC-c---EEEEec-CCCCchHHHHHHHHHHhCCC
Q 019993 87 TG--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN-A---TVNLIS-NPVNSTVPIAAEVFKKAGTY 157 (332)
Q Consensus 87 ~~--aDiVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~-a---~viv~t-NP~~~~t~~~~~~~~~~~~~ 157 (332)
++ .|+||++|+...... ......+..|+.....+++.+.++... + .+|.+| .-+..... ........+
T Consensus 80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~---~~~~E~~~~ 156 (340)
T PLN02653 80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTP---PPQSETTPF 156 (340)
T ss_pred HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCC---CCCCCCCCC
Confidence 54 599999998643221 122334567888889999998877643 2 344443 11110000 000000112
Q ss_pred CCCceEEeehhhHHHHHHHHHHHhCCC
Q 019993 158 DPKKLLGVTMLDVVRANTFVAEVLGLD 184 (332)
Q Consensus 158 ~~~kviG~~~ld~~r~~~~la~~l~v~ 184 (332)
.+...+|.+.....++...+++.+++.
T Consensus 157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~ 183 (340)
T PLN02653 157 HPRSPYAVAKVAAHWYTVNYREAYGLF 183 (340)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCe
Confidence 234567777666666666677777653
No 125
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.76 E-value=0.00023 Score=67.41 Aligned_cols=71 Identities=25% Similarity=0.368 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC------C--CCCeEEEEeCCCCHHhhcCCCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------D--TGAVVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~------~--~~~~v~~~~~~~d~~~a~~~aDi 91 (332)
+|||+|||+ |.+|+.++..|+..|+ +|.++|+++.......-.+. . ....+.. ++++.++++++|+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~ 77 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF 77 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence 579999999 9999999999999888 99999997522111111110 0 0111332 3466788899999
Q ss_pred EEEcC
Q 019993 92 VIIPA 96 (332)
Q Consensus 92 Vi~~~ 96 (332)
||++.
T Consensus 78 Vi~~v 82 (328)
T PRK14618 78 AVVAV 82 (328)
T ss_pred EEEEC
Confidence 99984
No 126
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.72 E-value=0.00021 Score=70.54 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---H---------------HHHHHHhcCCCCCeEEEEeC--
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---P---------------GVTADISHMDTGAVVRGFLG-- 78 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~---------------~~~~dl~~~~~~~~v~~~~~-- 78 (332)
+.+||.|+||+|++|++++..|+..|+ +|+++|.... . .....+.+.. ...+..+..
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl 122 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI 122 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence 457899999999999999999999888 8999984320 0 0000011100 011222111
Q ss_pred --CCCHHhhcC--CCcEEEEcCCCCCCC-C-CCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCch--HHH
Q 019993 79 --QPQLENALT--GMDLVIIPAGVPRKP-G-MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNST--VPI 146 (332)
Q Consensus 79 --~~d~~~a~~--~aDiVi~~~g~~~~~-g-~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~--t~~ 146 (332)
...+.++++ ++|+||++|+....+ . .+. ...+..|+....++++.+++++....+|.+| .-+..- ..+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~ 202 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence 122345555 489999998653211 1 111 2335679999999999998887654455443 211100 000
Q ss_pred HHHH-HH------Hh---CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 019993 147 AAEV-FK------KA---GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197 (332)
Q Consensus 147 ~~~~-~~------~~---~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg 197 (332)
.+- +. .. .-..+...+|.+.+...++...+++.+|++.-.++ +.++|.+.
T Consensus 203 -~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 203 -EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred -cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 000 00 00 01223457888877767777778888887765553 56788653
No 127
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.70 E-value=0.00025 Score=65.19 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=67.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP 102 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~ 102 (332)
|.|+||+|++|++++..|+..|+ +|+.++++...... +.. ..+..... ....++++++|+||++++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999999887 99999987621100 000 01111111 23357889999999999865432
Q ss_pred C-C---ChhhhHhhhHHHHHHHHHHHHhhCCC
Q 019993 103 G-M---TRDDLFNINAGIVRTLCEGIAKCCPN 130 (332)
Q Consensus 103 g-~---~r~~~~~~n~~~~~~i~~~i~~~~p~ 130 (332)
+ . ....+...|+...+.+++.++++...
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 2 1 12345667999999999999887643
No 128
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.67 E-value=0.00038 Score=64.84 Aligned_cols=160 Identities=10% Similarity=0.087 Sum_probs=86.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC-HHhhc-----CCCcEEEEcC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA 96 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aDiVi~~~ 96 (332)
|.|+||+|++|++++..|+..|+ ..+.++|..........+.+... .+... ..+ +++++ .++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998886 24667787542111011111110 00000 011 12222 3799999998
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC------CCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP------~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~ 170 (332)
+.+.............|+....++.+.+.+... .+|..|.. .+... .......+...+|.+....
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~-------~E~~~~~p~~~Y~~sK~~~ 147 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFI-------EEREYEKPLNVYGYSKFLF 147 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCC-------ccCCCCCCCCHHHHHHHHH
Confidence 754333333445677899999999999987653 34544332 11000 0001112234466655555
Q ss_pred HHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 171 VRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 171 ~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
.++...++...+++..-++ ..++|..
T Consensus 148 E~~~~~~~~~~~~~~~~lR~~~vyG~~ 174 (308)
T PRK11150 148 DEYVRQILPEANSQICGFRYFNVYGPR 174 (308)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeecCCC
Confidence 5554445444455444343 5677754
No 129
>PLN02240 UDP-glucose 4-epimerase
Probab=97.65 E-value=0.00053 Score=65.04 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC--CCCeEEEEe----CCCCHHhhcC--C
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFL----GQPQLENALT--G 88 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~----~~~d~~~a~~--~ 88 (332)
+.+||.|+||+|++|++++..|+..|+ +|+++|... .......+.+.. ....+..+. ...++.++++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 457999999999999999999998887 899998643 111111121110 011222111 1122334444 6
Q ss_pred CcEEEEcCCCCCC-CC-CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 89 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 89 aDiVi~~~g~~~~-~g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+|+||++++.... .. ......+..|+.....+++.+.+..... +|.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 8999999886422 11 2345567889999999999887654333 44444
No 130
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.62 E-value=0.00015 Score=67.64 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~ 98 (332)
|||.|+||+|++|++++..|+..| +|+.+|.... ....++. ....+.++++ ++|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~----------~~~~Dl~---d~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST----------DYCGDFS---NPEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc----------cccCCCC---CHHHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999998776 4777776421 0001111 1112345555 58999999876
Q ss_pred CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
.... ..........|+....++++.+++.. ..+|.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 4321 12233345679999999999998765 3455443
No 131
>PLN02253 xanthoxin dehydrogenase
Probab=97.62 E-value=0.001 Score=60.98 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT----- 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----- 87 (332)
+.+++.|+||+|.+|..++..|+..|. +|+++|.+.. .....++.. ..++..+. +-+| .+++++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999888 8999998652 222223321 12222211 1123 223233
Q ss_pred --CCcEEEEcCCCCCCC-C----CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHh
Q 019993 88 --GMDLVIIPAGVPRKP-G----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKA 154 (332)
Q Consensus 88 --~aDiVi~~~g~~~~~-g----~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~ 154 (332)
..|++|+++|..... + .+ ....+..|+.....+.+.+.++ ...+.+++++......
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------- 160 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI----------- 160 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc-----------
Confidence 689999999864321 1 11 1234556655554444443322 1345666665433211
Q ss_pred CCCCCCceEEeehhhHHHHHHHHHHHhC
Q 019993 155 GTYDPKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 155 ~~~~~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
+.+..-.++.+......+.+.++..++
T Consensus 161 -~~~~~~~Y~~sK~a~~~~~~~la~e~~ 187 (280)
T PLN02253 161 -GGLGPHAYTGSKHAVLGLTRSVAAELG 187 (280)
T ss_pred -cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 122223466655455567777777775
No 132
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00073 Score=64.41 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=79.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH------HHH------HH--HhcCCCCCeEEEEeCCCCHHhh
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT------AD--ISHMDTGAVVRGFLGQPQLENA 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~------~~~------~d--l~~~~~~~~v~~~~~~~d~~~a 85 (332)
.++|+|||- |+||..+|..++..|+ .++-+|+|+.+ |.. .| +.......+++. |+|. +.
T Consensus 9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~ 81 (436)
T COG0677 9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE 81 (436)
T ss_pred ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence 379999999 9999999999999999 99999999711 110 00 101111234554 5675 55
Q ss_pred cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCc-EEEE-ecCCCCchHHHHHHHHHHhCCC
Q 019993 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNL-ISNPVNSTVPIAAEVFKKAGTY 157 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a-~viv-~tNP~~~~t~~~~~~~~~~~~~ 157 (332)
++.||+++++.-+|.+... .-.+..+.+-++.|.++-..+ .||+ .|-|.+..-.++--.+...+|+
T Consensus 82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL 149 (436)
T COG0677 82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL 149 (436)
T ss_pred cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence 8899999999888765432 122455666666777666444 3333 3788776654432233333544
No 133
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.00044 Score=65.10 Aligned_cols=123 Identities=15% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH---HhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD---ISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d---l~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+|||+|+|+ |.+|+.++..|...|+ +|.+++++..+..... +........+......++ .++...+|+||++
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRS-AEDMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcc-hhhcCCCCEEEEE
Confidence 4579999999 9999999999999887 8999988652211110 000000011110001123 2457889999999
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehh
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML 168 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~l 168 (332)
.-..+ ..+.++.+.... |++.|+...|=.+..- .+.+. +|+.+|++- +..
T Consensus 80 vK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g~~~~ 131 (313)
T PRK06249 80 LKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGGLCFI 131 (313)
T ss_pred ecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEEeeeE
Confidence 53221 123333444333 6788888888776542 23333 577777654 443
No 134
>PLN02686 cinnamoyl-CoA reductase
Probab=97.60 E-value=0.00053 Score=65.97 Aligned_cols=177 Identities=13% Similarity=0.083 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcC---C-CCCeEEEEe----CCCCHHhhcC
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---D-TGAVVRGFL----GQPQLENALT 87 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~---~-~~~~v~~~~----~~~d~~~a~~ 87 (332)
..+.++|.|+||+|++|++++..|+..|+ +|+++..+.. .....++... . ....+..+. ...++.++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 34567999999999999999999999998 8877654431 1111222110 0 001222211 1123557789
Q ss_pred CCcEEEEcCCCCCCCCC--ChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC-Cch--------HHHHHHHHHH--
Q 019993 88 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV-NST--------VPIAAEVFKK-- 153 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~--~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~-~~~--------t~~~~~~~~~-- 153 (332)
++|.|+.+++.....+. ....+...|+....++.+.+.+.. .. .+|.+|... ... .....+-.+.
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~ 206 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE 206 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence 99999998875432221 123445668899999999988652 33 344443321 000 0000000000
Q ss_pred hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 019993 154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h 196 (332)
..-.++...+|.+.+...++...+++..|++..-++ +.++|..
T Consensus 207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG 250 (367)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence 000011123556666666666666666666544442 5677764
No 135
>PRK08643 acetoin reductase; Validated
Probab=97.60 E-value=0.0036 Score=56.51 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=65.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~ 87 (332)
+++.|+||+|.+|..++..|++.|. +|+++|.+. ......++.+.. ..+..+. +-++. .++ +.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999887 899999876 222333343321 1222111 11221 122 24
Q ss_pred CCcEEEEcCCCCCC-CC--CCh---hhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRK-PG--MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~-~g--~~r---~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP 139 (332)
..|+||+++|.... +- .+. ...+..|+... +.+.+.+.+..+++.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 68999999986421 11 111 22344555443 3344444433345667777653
No 136
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.60 E-value=0.001 Score=68.74 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=68.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC--------HHhhcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--------LENALTGM 89 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~--~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d--------~~~a~~~a 89 (332)
|||.|+||+|++|++++..|+. .+. +|++++++.......++.......++..+.+. +| ..+.++++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~ 78 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI 78 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence 5899999999999999999984 455 89999986522222222111000122221110 11 11234899
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi 134 (332)
|+||++++.... .....+....|+.....+++.+.+.....++.
T Consensus 79 D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~ 122 (657)
T PRK07201 79 DHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATFHH 122 (657)
T ss_pred CEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEE
Confidence 999999875422 22344566789999999999988764343333
No 137
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.60 E-value=0.0016 Score=59.57 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe----CCCCHHh------
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLEN------ 84 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~~------ 84 (332)
.++.+.+.|+|||+.+|..+|..|+.+|+ +|+|+.+++ +...+.++.+.. ...+..+. ...+.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence 45567899999999999999999999999 999999987 566777777653 12222211 1112211
Q ss_pred -hcCCCcEEEEcCCCCCCCC------CChhhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecC
Q 019993 85 -ALTGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN 138 (332)
Q Consensus 85 -a~~~aDiVi~~~g~~~~~g------~~r~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tN 138 (332)
..-..|+.|..||...-.. .+-.+++.-|+.....+.. .|.+.. .+-||+++.
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S 143 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS 143 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 1126899999999764321 1234556667655555544 444433 455666643
No 138
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.59 E-value=0.0031 Score=56.99 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~ 87 (332)
++|.|+||+|.+|++++..|++.|+ +|+++|++. ......++........+..+. +.++. ..+ +.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999887 999999875 222222333211111222211 11221 112 24
Q ss_pred CCcEEEEcCCCCCCCC---CChh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~~r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP 139 (332)
..|+||+++|.+.... .+.. ..+..|+.. .+.+.+.+.+..+++.++++|..
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 5799999998654221 2222 223445544 44555555544435667776654
No 139
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.59 E-value=0.0011 Score=58.27 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cH-------------HH--HHHHhcCCCCCeEEEEe--
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP-------------GV--TADISHMDTGAVVRGFL-- 77 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~-------------~~--~~dl~~~~~~~~v~~~~-- 77 (332)
..||+|+|+ |.+|+.++..|+..|.. +|+|+|.+. +. .. ...+.+.....++..+.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIG-KLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCC-EEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 358999999 99999999999999873 899999982 10 00 11122222223333221
Q ss_pred -CCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEE
Q 019993 78 -GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135 (332)
Q Consensus 78 -~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv 135 (332)
...++.+.++++|+||.+ ..|.+....+.+.+.+..+..+++.
T Consensus 99 i~~~~~~~~~~~~DlVi~a---------------~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEA---------------FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred CCHhHHHHHhcCCCEEEEC---------------CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 122345568999999998 3455555666666666655554444
No 140
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00084 Score=61.73 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=102.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEE-EeCCCCHHhhcC--CCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVi~ 94 (332)
|+|.|+|++||+|++....++.+....+|+.+|.-.- ..-..++.+......++. +.......+.++ ..|.|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5899999999999999998887765557899998762 223344544322222332 111122335556 6899999
Q ss_pred cCCCCC--CCCCChhhhHhhhHHHHHHHHHHHHhhCCC-cEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHH
Q 019993 95 PAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV 171 (332)
Q Consensus 95 ~~g~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~-a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~ 171 (332)
.|.-.. +.=....+++..|+-....+.+.++++... -.+.+.|--|..--..-...|-..+.+.|+--+..+.-.+.
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD 160 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD 160 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence 875321 111235688999999999999999999864 34555565443210000000113345666667776655566
Q ss_pred HHHHHHHHHhCCCC
Q 019993 172 RANTFVAEVLGLDP 185 (332)
Q Consensus 172 r~~~~la~~l~v~~ 185 (332)
.|.+...+.+|++.
T Consensus 161 ~lVray~~TYglp~ 174 (340)
T COG1088 161 LLVRAYVRTYGLPA 174 (340)
T ss_pred HHHHHHHHHcCCce
Confidence 67788888888764
No 141
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.56 E-value=0.0017 Score=58.70 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (332)
.++|.|+||+|.+|..++..|+..|+ +|++.|+++ .......+.+.. .++..+. +-+| ..++ +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999888 899999876 222333343321 1222211 1122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 019993 87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 139 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP 139 (332)
...|+||+++|..... ..+ ....+..|+.....+.+.+.++. ..+.|+++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 3579999998864211 111 23345567766666666665442 34566666653
No 142
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.56 E-value=0.00057 Score=61.76 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------- 86 (332)
.+++.|+||+|.+|+.++..|++.|. +|++++.++ ......++.+.. ..+..+. .-+|. .+++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999998 899999887 223333444332 2232221 11221 1222
Q ss_pred CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
...|+||.++|..... ..+ ....+..|+.. .+.+.+.+.+..+.+.|+++|.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss 144 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS 144 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence 3489999999864211 111 22334456665 5566666633344455665553
No 143
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.56 E-value=0.0018 Score=58.64 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=65.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE--EeCCCCHHhhc--------CC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG--FLGQPQLENAL--------TG 88 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~--------~~ 88 (332)
+++.|+||+|.+|..++..|++.|. +|+++|++.. .....++... ...+.. +....+..+++ ..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAG--NAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4699999999999999999999987 8999998752 1122222211 111111 11111222333 34
Q ss_pred CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh---hCCCcEEEEecCC
Q 019993 89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP 139 (332)
Q Consensus 89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~---~~p~a~viv~tNP 139 (332)
.|+||+++|...... .+ ....+..|+.....+.+.+.+ ..+.+.+++++..
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 137 (260)
T PRK08267 78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA 137 (260)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 599999998753221 11 233455677655555555433 2344556666543
No 144
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.005 Score=55.14 Aligned_cols=116 Identities=19% Similarity=0.056 Sum_probs=68.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc----CCCc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL----TGMD 90 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~----~~aD 90 (332)
++|.|+||+|.+|..++..|+..|+ +|+++|+++ ......++.... ..++..+.. -+| .++.+ +..|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 5899999999999999999999888 899999876 222333333221 123332211 122 22222 2459
Q ss_pred EEEEcCCCCCC---CCCChh---hhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 019993 91 LVIIPAGVPRK---PGMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 139 (332)
Q Consensus 91 iVi~~~g~~~~---~g~~r~---~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP 139 (332)
++|+++|.... .+.+.. +.+..|+.....+.+.+.++. ..+.++++|..
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 99999875321 122222 345567766666666655432 34566666543
No 145
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.54 E-value=0.00062 Score=63.02 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=45.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+|||. |.+|.+++..|...|+ +|.++|.++. ...+. .... +.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~---~~g~---~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAI---ERGL---VDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH---HCCC---ccc--ccCCH-hHhcCCCEEEEcC
Confidence 58999999 9999999999998887 8999998752 11222 1111 111 12343 5689999999995
No 146
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.54 E-value=0.00065 Score=55.34 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
.+||.|||+ |.||.+++..|...|+ +|.-+-... ..-..++.+.. ..... .++.+.+++||+++++. |
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iav--p 77 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAV--P 77 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S---
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEe--c
Confidence 479999999 9999999999999998 776664432 22223333321 11221 13467789999999994 1
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhh--C-CCcEEEEe--cCCCCchHHH
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLI--SNPVNSTVPI 146 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~--~-p~a~viv~--tNP~~~~t~~ 146 (332)
+| .+.++++++..+ . |+.+|+=. +-+++++.++
T Consensus 78 -------Dd-------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 78 -------DD-------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp -------CC-------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred -------hH-------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 11 456788888876 3 44433333 3667777653
No 147
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.52 E-value=0.00072 Score=63.74 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhCCCCcEEEEEccCCc--H--------HH--HHH----HhcCC---------CCCeEEEEeCCCCHHhhc
Q 019993 32 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----ISHMD---------TGAVVRGFLGQPQLENAL 86 (332)
Q Consensus 32 vG~~~a~~l~~~~~~~ei~L~D~~~~--~--------~~--~~d----l~~~~---------~~~~v~~~~~~~d~~~a~ 86 (332)
||+.+|..++..|+ +|+|+|.++. . +. ..+ +.... ...+++... +.+.++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 57899999999998 9999999871 1 11 001 11111 013455421 22467889
Q ss_pred CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 019993 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
++||+||.++ .++..+.+.+..++.+.++ ++++ +||.......-++ ..... +.|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la----~~~~~-p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQ----RHVAH-PERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHH----hhcCC-cccEEEE
Confidence 9999999995 7789999999999999984 6644 8888776653222 22222 3567776
Q ss_pred e
Q 019993 166 T 166 (332)
Q Consensus 166 ~ 166 (332)
.
T Consensus 137 H 137 (314)
T PRK08269 137 H 137 (314)
T ss_pred e
Confidence 4
No 148
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.50 E-value=0.00048 Score=63.56 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=52.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHH-------------HH-hcCCCCCeEEEEeCCCCHHhhc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-------------DI-SHMDTGAVVRGFLGQPQLENAL 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-------------dl-~~~~~~~~v~~~~~~~d~~~a~ 86 (332)
+||+-||| |+||...+.-++..=+..+|.++|+++.+-.+. |. .++. ..++- | ++|.+.++
T Consensus 2 ~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdiekai 76 (481)
T KOG2666|consen 2 VKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKAI 76 (481)
T ss_pred ceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHHh
Confidence 69999999 999998877666553334999999987221111 11 1111 12333 3 56889999
Q ss_pred CCCcEEEEcCCCCCCC
Q 019993 87 TGMDLVIIPAGVPRKP 102 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~ 102 (332)
+.||+|++....|.+.
T Consensus 77 ~eadlvfisvntptkt 92 (481)
T KOG2666|consen 77 KEADLVFISVNTPTKT 92 (481)
T ss_pred hhcceEEEEecCCccc
Confidence 9999999998887653
No 149
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.50 E-value=0.0012 Score=64.14 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--H--HHHHHhcCCCCCe-EEE-EeCCCCHHhhcC----C
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAV-VRG-FLGQPQLENALT----G 88 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~--~~~dl~~~~~~~~-v~~-~~~~~d~~~a~~----~ 88 (332)
+.+||.|+||+|++|+.++..|+..|+ +|++++++... . ...++........ +.. .....++.++++ +
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 457999999999999999999999888 89999886511 0 1111111110111 111 111123445566 5
Q ss_pred CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+|+||.+++.+... ..+.+..|.....++.+.+++..-.- +|++|
T Consensus 137 ~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r-~V~iS 181 (390)
T PLN02657 137 VDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKH-FVLLS 181 (390)
T ss_pred CcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence 99999987643211 12334667888888888888765443 44443
No 150
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.50 E-value=0.00067 Score=63.10 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=66.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhh----cCCCcEEEEcCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV 98 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----~~~aDiVi~~~g~ 98 (332)
|.|+||+|++|++++..|...|+. +|+++|..........+........+.. ...++.. +.++|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence 679999999999999999988852 6888886542111111111000011110 1122222 2589999999986
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+.....+.......|+.....+++.+.+... .+|.+|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 5332233455667899999999999887653 344444
No 151
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0014 Score=63.09 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCC-eEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++||.|||| |+||+.+|..|++.+- .+|++.|+... ...+.+..+....+ .+... ....+.+++++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence 468999999 9999999999999875 49999998742 12222221111111 11111 12345688999999999974
No 152
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.49 E-value=0.0036 Score=56.60 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+.++|.|+||+|.+|+.++..|++.|+ +|+++++++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446999999999999999999999988 899999875
No 153
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.48 E-value=0.0037 Score=56.00 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------- 86 (332)
.++|.|+||+|.+|..++..|++.|+ +|++++++.. .....++.+ ...+..+.. -.| +..++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999988 8999998762 222233332 122222211 122 22222
Q ss_pred CCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
...|+||.++|...... .+ ..+.+..|+.....+.+.+.++. ..+.+|+++.
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 141 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVAS 141 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 35799999998642111 11 12334556554444444444332 2344555543
No 154
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.48 E-value=0.0026 Score=58.25 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=65.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTGM 89 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~a 89 (332)
++|.|+||+|++|+.++..|+..|. .|++++.++.. ..++.... ...+..+. .-+|. .++ +...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999887 88998876511 11121111 11222111 11232 122 3457
Q ss_pred cEEEEcCCCCCCCC-C--Ch---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 90 DLVIIPAGVPRKPG-M--TR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 90 DiVi~~~g~~~~~g-~--~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
|+||+++|...... . +. ...+..|+.....+.+.+.++ ...+.+|++|.
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS 135 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS 135 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 99999998753221 1 11 234456777777777775332 22345555543
No 155
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.48 E-value=0.0005 Score=63.23 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=66.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC--cEEEEcCCCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP 99 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a--DiVi~~~g~~ 99 (332)
||.|+||+|++|++++..|+..|+ +|++++... .|+.+ ..++.++++++ |+||++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999998887 899988641 11111 12345667666 9999998864
Q ss_pred CCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 100 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 100 ~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
.... .........|+....++++.+.+... .+|++|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 22345567889999999999876643 344443
No 156
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.47 E-value=0.0046 Score=56.53 Aligned_cols=159 Identities=18% Similarity=0.115 Sum_probs=85.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------ 87 (332)
.++|.|+||+|++|+.++..|+..|+ +|++++.+. ......++.......++..+. .-+| ....++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999998 899999875 222333333221112222211 1122 222233
Q ss_pred -CCcEEEEcCCCCCCC----CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 019993 88 -GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (332)
Q Consensus 88 -~aDiVi~~~g~~~~~----g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~ 156 (332)
..|++|+++|..... ..+. ...+..|......+.+.+.++ ...+.++++|..... .+
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~------------~~ 152 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS------------NT 152 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc------------CC
Confidence 679999998853221 1122 223445666655555544333 234566666542211 11
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G 194 (332)
.|..-.++.+......+...+++.++ +..+++.++.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~ 188 (276)
T PRK05875 153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR 188 (276)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence 22222344444344455566666654 4456655554
No 157
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.47 E-value=0.0056 Score=56.05 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHHh---------hcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLEN---------ALT 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~---------a~~ 87 (332)
.+.+.|+||+|.+|+.++..|+..|+ +|++++++.. .....++.+......+..+. +-+|.++ .+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 34689999999999999999999888 8999987652 22222222221112233221 1223211 124
Q ss_pred CCcEEEEcCCCCCCC--C-CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKP--G-MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~--g-~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN 138 (332)
..|+||.++|..... . .+ ..+.+..|+.....+.+. +++... +.++++|.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS 140 (280)
T PRK06914 81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINISS 140 (280)
T ss_pred CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECc
Confidence 579999998864321 1 11 123345666655555554 443333 34555543
No 158
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.46 E-value=0.0013 Score=59.13 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-----
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---ENAL----- 86 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~----- 86 (332)
+.++|.|+||+|++|.+++..|+..|+ +|++++++.. .....++.... .++..+. .-++. ..++
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998888 8888887641 22223333221 1222111 11232 2222
Q ss_pred --CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecC
Q 019993 87 --TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISN 138 (332)
Q Consensus 87 --~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tN 138 (332)
.+.|+||.++|.......+....+..|......+++.+.++.. ++.+|++|.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3689999998754222222233445677777777777776643 455665643
No 159
>PRK05865 hypothetical protein; Provisional
Probab=97.45 E-value=0.00083 Score=70.97 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=71.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
|||.|+||+|++|++++..|+..|+ +|+.+|.+.... + ... ...+.. .....++.++++++|+||++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~-~~~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----W-PSS-ADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----c-ccC-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999888 999999764210 1 111 011221 111234567789999999998643
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
.. ....|+....++++.+.+.... .+|++|.+.
T Consensus 73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 21 3467888888999988876533 566666654
No 160
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.45 E-value=0.0029 Score=56.99 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------ 87 (332)
.++|.|+||+|.+|..++..|+..|. +|+++++++ ......++.... .++..+. .-++ ..+.++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998887 899999876 222333343322 2222211 1122 223333
Q ss_pred -CCcEEEEcCCCCCCC----CCChh---hhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 88 -GMDLVIIPAGVPRKP----GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 88 -~aDiVi~~~g~~~~~----g~~r~---~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
..|+||..+|..... ..+.. ..+.-|+.....+. +.+.+. ..+.++++|..... .
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~~~~------------~ 149 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGL------------G 149 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhc------------c
Confidence 459999999864321 12222 23445655544333 334322 23456666543211 1
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G 194 (332)
+.+..-.++.+......+.+.++..+. +..+++..+.
T Consensus 150 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v~~i~ 186 (253)
T PRK06172 150 AAPKMSIYAASKHAVIGLTKSAAIEYA--KKGIRVNAVC 186 (253)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence 122223344443333445666666663 4556555543
No 161
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.44 E-value=0.0053 Score=55.55 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~ 86 (332)
.++|.|+||+|.+|+.++..|+..|. +|+++|.+.. +....++.... .++..+. +-+|.+ +. +
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999888 8999998652 22222232211 1222211 112321 11 2
Q ss_pred CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh----CCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~----~p~a~viv~tN 138 (332)
...|.||+++|...... .+ ....+..|+.....+.+.+.++ .+.+.++++|.
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46799999988632111 11 2234567877777777766554 23456666655
No 162
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.44 E-value=0.00085 Score=64.81 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=43.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+||+|||+.|.+|..++..|...|+ +|.++|.+.. ++.++++++||+||++.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 37899999459999999999999988 8999997420 13357789999999995
No 163
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.44 E-value=0.00087 Score=60.35 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=52.9
Q ss_pred CchhhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 019993 241 GSATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK 316 (332)
Q Consensus 241 g~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa 316 (332)
++..|+ ..++++|.+|.+ .++.+ +.++|.+ |+|.++++||+|+++|+.++.. ++|++..+++++...
T Consensus 134 ~~~~~a-----~~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 134 GSGEYA-----EAAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK 204 (232)
T ss_dssp TTSCHH-----HHHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred cccchH-----HHHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence 455555 355555677764 35555 4678986 7899999999999999999776 699999999888776
Q ss_pred HHHHHHHHHhh
Q 019993 317 KELAGSIQKGI 327 (332)
Q Consensus 317 ~~l~~~~~~~~ 327 (332)
..-+-.++.++
T Consensus 205 ~~e~L~veAa~ 215 (232)
T PF11975_consen 205 AYERLTVEAAL 215 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555543
No 164
>PRK12320 hypothetical protein; Provisional
Probab=97.44 E-value=0.001 Score=68.81 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
|||.|+||+|++|++++..|+..|+ +|+.+|..... ..+... ..+.. +. ...+.++++++|+||++++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~-d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLR-NPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCC-CHHHHHHhcCCCEEEEcCccC
Confidence 5899999999999999999999888 99999975421 111110 11111 11 112456678999999998653
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
. .. ....|+....++++.+++... .+|.+|
T Consensus 72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 1 11 124688888999998887653 455544
No 165
>PRK05717 oxidoreductase; Validated
Probab=97.44 E-value=0.0017 Score=58.69 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~ 88 (332)
.++|.|+||+|++|++++..|+..|. +|+++|.++...... ..+.. ..+..+. .-++. .++ +..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999887 899999865221111 11111 1111111 11221 111 234
Q ss_pred CcEEEEcCCCCCCCC-----CC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 89 MDLVIIPAGVPRKPG-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 89 aDiVi~~~g~~~~~g-----~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
.|++|.++|...... .+ ....+..|+.....+.+.+.++. ..+.+|++|...... +.+
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~------------~~~ 152 (255)
T PRK05717 85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ------------SEP 152 (255)
T ss_pred CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC------------CCC
Confidence 799999998653211 11 22445677777777777765432 245566665432211 122
Q ss_pred CCceEEeehhhHHHHHHHHHHHhC
Q 019993 159 PKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 159 ~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
..-.++.+......+.+.+++.++
T Consensus 153 ~~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 153 DTEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhc
Confidence 223456544344456677777775
No 166
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.43 E-value=0.0019 Score=58.42 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=83.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE-EeCCCCHHhh-------cCCCc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMD 90 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-------~~~aD 90 (332)
+++.|+||+|.+|..++..|+..|. +|+++|.+.. .....++... . ..+.. .....+.+++ +...|
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-A-IAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-e-EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999998 9999998762 2222222111 0 01110 1111122222 24689
Q ss_pred EEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh----CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 019993 91 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 160 (332)
Q Consensus 91 iVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~----~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~ 160 (332)
++|+++|...... .+ ....+..|+.....+.+.+.++ .+++.|++++...... +.|..
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~ 150 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR------------GEALV 150 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC------------CCCCC
Confidence 9999988642111 11 2234566766666666665433 2345666665532111 22333
Q ss_pred ceEEeehhhHHHHHHHHHHHhCCCCCCCce
Q 019993 161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDV 190 (332)
Q Consensus 161 kviG~~~ld~~r~~~~la~~l~v~~~~v~~ 190 (332)
-.++.+......+.+.++..+. +..+++
T Consensus 151 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 178 (257)
T PRK07067 151 SHYCATKAAVISYTQSAALALI--RHGINV 178 (257)
T ss_pred chhhhhHHHHHHHHHHHHHHhc--ccCeEE
Confidence 3455544333445566666553 344543
No 167
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.43 E-value=0.0011 Score=60.66 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
+|||+|||+ |.+|+.++..|...+. ..++.++|+++.. ...+.+.. .+.. +.+..+.++++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 579999999 9999999999988762 2379999987522 12222211 1121 2344677899999999841
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~ 141 (332)
-..+.++.+.+..+. +..|+..+|-+.
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 223445555555444 456666667553
No 168
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.43 E-value=0.00098 Score=62.08 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.|||+|||. |.+|+.++..|...|+ +|.++|++.... ..+.... ... ..++++++++||+||++.
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITML 66 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 368999999 9999999999998887 899999876221 1122211 111 235678889999999984
No 169
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.43 E-value=0.0041 Score=56.39 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=49.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHh-------hcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------ALT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a~~ 87 (332)
|+|.|+||+|.+|..++..|+..|. +|++.|+++ ......++.+.. .+..+. +-+| .++ .+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999998 899999876 223333443221 111111 1122 222 234
Q ss_pred CCcEEEEcCCCC
Q 019993 88 GMDLVIIPAGVP 99 (332)
Q Consensus 88 ~aDiVi~~~g~~ 99 (332)
..|++|.++|..
T Consensus 76 ~id~li~naG~~ 87 (259)
T PRK08340 76 GIDALVWNAGNV 87 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999999864
No 170
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.43 E-value=0.0067 Score=54.47 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=94.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCC-------CCHHhhcCCCcE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-------PQLENALTGMDL 91 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~-------~d~~~a~~~aDi 91 (332)
+-+.|+||++.+|..+|..|...|+ .|+|..+++ ++..+.++.+....+..-..... ..+.+.+...|+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 4589999999999999999999999 999999987 55666666641111111111111 113456788999
Q ss_pred EEEcCCCCCCCC------CChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 019993 92 VIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (332)
Q Consensus 92 Vi~~~g~~~~~g------~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv 162 (332)
+|..||...... .+...++..|+..+......+-.. ...+.||+.+.-.+.. .||...+
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~v 152 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGAV 152 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCcc
Confidence 999999764321 124556677877666555544322 1356788887655433 2566778
Q ss_pred EEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 163 iG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+|-|.-....|..-+-+.+ ....|++..|
T Consensus 153 Y~ATK~aV~~fs~~LR~e~--~g~~IRVt~I 181 (246)
T COG4221 153 YGATKAAVRAFSLGLRQEL--AGTGIRVTVI 181 (246)
T ss_pred chhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence 8776433322222222222 2355655544
No 171
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.42 E-value=0.0013 Score=61.78 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=47.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||+|||+ |.+|..++..|...++..+|.++|+++. ...+. ... ..... ..+.++++++||+||++.
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~---~~g--~~~~~---~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR---ELG--LGDRV---TTSAAEAVKGADLVILCV 74 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH---hCC--CCcee---cCCHHHHhcCCCEEEECC
Confidence 68999998 9999999999988876558999998762 11222 111 11111 224567889999999995
No 172
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.42 E-value=0.0021 Score=58.08 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+.+||+|||+ |.+|..++..++..+. ..+++.++.+.. ....++.+.. .+.. +.|+++.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence 4579999999 9999999998887652 334777876421 1122233221 1222 235678889999999984
No 173
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.41 E-value=0.0015 Score=61.13 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=60.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
|||+|||. |.+|++++..|...++ +|.++|+++.. +..+..... .......++.+.++++|+|+++. |
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p- 68 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--P- 68 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--C-
Confidence 58999999 9999999999999887 99999987622 222332211 11111123344567899999984 1
Q ss_pred CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 019993 101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 140 (332)
Q Consensus 101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~ 140 (332)
...+.++++.+.... ++.+||..||..
T Consensus 69 -------------~~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 69 -------------HGIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred -------------chHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 013445555555554 566777776654
No 174
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.40 E-value=0.0016 Score=64.23 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=47.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+||||+|.+|..++..|...|+ +|.++|.++... .++.... . +.. +++..+++.+||+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~-g--v~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL-G--VEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc-C--Cee---ccCHHHHhccCCEEEEec
Confidence 6899998559999999999998887 899999875221 1111111 1 121 345678899999999985
No 175
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.40 E-value=0.0036 Score=57.44 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~ 88 (332)
.++|.|+||+|.+|+.++..|+..|. +|++++++... ..++.... ...+..+. .-+| ..+++ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999888 89999987521 11222211 11122111 1122 22222 35
Q ss_pred CcEEEEcCCCCCC---CCCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 89 MDLVIIPAGVPRK---PGMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 89 aDiVi~~~g~~~~---~g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
.|+||+++|.... ...+. ...+..|+.....+.+.+.++ ...+.+|++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 7999999986421 11222 233566776666666664432 22345666654
No 176
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.39 E-value=0.0031 Score=56.29 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------ 86 (332)
.++|.|+||+|.+|+.++..|+..|+ +++++..+. ......++.... .++..+. .-++ +++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999998 788877654 122233333322 2223221 1122 22333
Q ss_pred -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
...|+||+++|...... .+ ....+..|+.....+.+.+.+.. +.+.++++|..... .+.|
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~------------~~~~ 148 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA------------LPLP 148 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc------------CCCC
Confidence 36899999998643211 11 22334566665555555554432 45566666542211 1233
Q ss_pred CCceEEeehhhHHHHHHHHHHHhC
Q 019993 159 PKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 159 ~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
....++.+......+...+++.++
T Consensus 149 ~~~~Y~~sK~a~~~~~~~~a~~~~ 172 (245)
T PRK12937 149 GYGPYAASKAAVEGLVHVLANELR 172 (245)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhh
Confidence 334455543333345555666554
No 177
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.39 E-value=0.0079 Score=55.14 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL-GQPQ---LENAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~ 86 (332)
.+++.|+||+|.+|+.++..|+..|. +|++++++.. +..+.++.... .++..+. .-++ .+..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence 35799999999999999999999887 8999998641 11222333221 1222111 1112 22223
Q ss_pred -------CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHH
Q 019993 87 -------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV 150 (332)
Q Consensus 87 -------~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~ 150 (332)
...|++|+++|..... ..+. ...+..|+.....+.+.+..+ ...+.++++|.+....
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------- 154 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD------- 154 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc-------
Confidence 3679999999864211 1222 223445655555555555433 2346677666543221
Q ss_pred HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 019993 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (332)
Q Consensus 151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G 194 (332)
...++..-.++.+.....++...++..++ +..|++..+.
T Consensus 155 ---~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~ 193 (273)
T PRK08278 155 ---PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW 193 (273)
T ss_pred ---ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence 01123334566665555667777777776 4456555443
No 178
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.39 E-value=0.0015 Score=60.66 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+..||+|+|| |.+|.+++..|...|. .+|.++|++. .++.+.++.+.. +...... ..++++.++++|+||.+
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~-~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARATA-GSDLAAALAAADGLVHA 199 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe-ccchHhhhCCCCEEEEC
Confidence 34468999999 9999999999998875 4799999986 344555554432 1122221 23445678999999998
Q ss_pred --CCC
Q 019993 96 --AGV 98 (332)
Q Consensus 96 --~g~ 98 (332)
+|+
T Consensus 200 Tp~Gm 204 (284)
T PRK12549 200 TPTGM 204 (284)
T ss_pred CcCCC
Confidence 444
No 179
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.38 E-value=0.0011 Score=63.31 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEE----EeCCCCHHhhcCCCcEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRG----FLGQPQLENALTGMDLVI 93 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aDiVi 93 (332)
++.++.|+||+|++|.+++..|.+.+...+|.++|.... ...-.+..... ...++. +....+...|+.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhhhhhccCc-eEE
Confidence 345899999999999999999999885569999998762 11111111101 122222 11234567899999 666
Q ss_pred EcCCCC-CCCCC-ChhhhHhhhHHHHHHHHHHHHhhCCC
Q 019993 94 IPAGVP-RKPGM-TRDDLFNINAGIVRTLCEGIAKCCPN 130 (332)
Q Consensus 94 ~~~g~~-~~~g~-~r~~~~~~n~~~~~~i~~~i~~~~p~ 130 (332)
+++..+ ..... .+.....-|+...+.+.+.+.+.+-+
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 665432 22222 35556678999999999999987643
No 180
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.0021 Score=57.77 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=30.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
++|.|+||+|.+|+.++..|++.|. +|+++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999888 899999865
No 181
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.38 E-value=0.0014 Score=58.99 Aligned_cols=114 Identities=13% Similarity=0.219 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
.++|.|+||+|.+|++++..|+..|+ +|++++++. ......++.... .++..+. +-+| +.+++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999888 999999876 223333443221 2222211 1122 22222
Q ss_pred CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
.+.|+||.++|...... .+ ..+.+..|+.. .+.+.+.+.+.. ...++++|.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss 140 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS 140 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence 36899999988643211 11 12233445544 556666665543 334555544
No 182
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.37 E-value=0.0012 Score=60.43 Aligned_cols=94 Identities=14% Similarity=0.257 Sum_probs=59.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-ccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
|||++||. |.||+.++..|+..++ ..+|+.+ |+++.+ ...+.... +.. ..+..+++++||+||++..
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKT---AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEE---eCChHHHHhcCCEEEEEEC
Confidence 68999998 9999999999988775 4578888 765422 22233221 222 1244677899999999951
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 140 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~ 140 (332)
| ..+.++.+.+..+. |+.+||..++..
T Consensus 71 -~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 71 -P---------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -c---------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 1 22344444554444 566666555554
No 183
>PRK07680 late competence protein ComER; Validated
Probab=97.37 E-value=0.0018 Score=59.64 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=63.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
|||+|||+ |.+|+.++..|...+. ..+|.++|++... ...+.+.. ..+... .+..++++++|+||++..
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence 58999999 9999999999988773 2479999987522 12222211 122322 245677899999999951
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 141 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~ 141 (332)
-..+.++++.+..+. ++.+|+.+++++.
T Consensus 72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 122344455555444 5677787888774
No 184
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.37 E-value=0.0047 Score=56.81 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (332)
.+.+.|+||+|.+|+.++..|+..|. +|++.|.++ +.....++.... .++..+. .-+| +.++ +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34699999999999999999999998 899999876 222333443221 2222211 1122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN 138 (332)
...|++|+.+|..... ..+. ...+..|+.... .+.+.+.+....+.|++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 1222 223345554444 44444444443456666654
No 185
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.37 E-value=0.001 Score=61.88 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=46.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
||+|||. |.+|+.++..|+..|+ +|.++|++... ...+..... .. .++..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~~---~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----VT---AETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----cc---cCCHHHHHhcCCEEEEec
Confidence 5999999 9999999999999888 99999987521 222332211 11 234578899999999985
No 186
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.37 E-value=0.0046 Score=54.96 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=65.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------C
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~ 87 (332)
++|.|+||+|.+|+.++..|+..|. +|+++++++ ......++... ..+..+.. -++ +.+++ .
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999998887 899999876 22223334322 12222111 122 22222 3
Q ss_pred CCcEEEEcCCCCCCC---CCChh---hhHhhhHHHHHHHHHHHHhh--CCCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~---g~~r~---~~~~~n~~~~~~i~~~i~~~--~p~a~viv~tNP 139 (332)
..|+||+++|..... ..+.. +.+..|+.....+.+.+.+. ...+.+++++..
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 789999998754321 12222 23445555444444444332 234556666653
No 187
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.37 E-value=0.0016 Score=58.95 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-E-EeC-CCCHHhhc-CCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-G-FLG-QPQLENAL-TGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~-~~~-~~d~~~a~-~~aDiVi~~ 95 (332)
++||.|+||+|++|+.++..|+..++ +|+.+.++....... +.... ...+. . ... ..++.+++ .++|+||++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~~~-~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQDP-SLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-cccCC-ceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 47899999999999999999998887 888776654221111 11111 11111 1 111 12344566 689999998
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~ 136 (332)
+|.....+. ...+..|......+++.+.+.... .++++
T Consensus 93 ~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i 130 (251)
T PLN00141 93 TGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV 130 (251)
T ss_pred CCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence 775422111 111234555567777777765443 34444
No 188
>PRK09135 pteridine reductase; Provisional
Probab=97.36 E-value=0.0046 Score=55.23 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=81.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------- 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------- 86 (332)
++|.|+||+|++|++++..|+..|. +|+++|... ......++.+... ..+..+. +-+|. ..++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999888 999999754 2222233433211 1122111 11232 2223
Q ss_pred CCCcEEEEcCCCCCC--CC-C---ChhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 87 TGMDLVIIPAGVPRK--PG-M---TRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~--~g-~---~r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
...|+||.++|.... .. . +..+.+..|+.....+.+.+.++.. .+.++..+. .. ....++
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~ 151 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD----IH--------AERPLK 151 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC----hh--------hcCCCC
Confidence 357999999885321 11 1 1234566777777777776654421 334443332 10 112234
Q ss_pred CCceEEeehhhHHHHHHHHHHHhC
Q 019993 159 PKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 159 ~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
+...++.+......+...+++.++
T Consensus 152 ~~~~Y~~sK~~~~~~~~~l~~~~~ 175 (249)
T PRK09135 152 GYPVYCAAKAALEMLTRSLALELA 175 (249)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHC
Confidence 444566655444555566666664
No 189
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.36 E-value=0.0066 Score=54.95 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
.+++.|+||+|.+|..++..|+..|. +|+++|+++ .+....++.......++..+. .-+| ..+++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999998 899999876 233334443311112222211 1122 22222
Q ss_pred CCCcEEEEcCCCCCCC--C-CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 019993 87 TGMDLVIIPAGVPRKP--G-MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~--g-~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~ 156 (332)
...|++|.++|..... . .+. ...+..|+.....+.+. +.+. ..+.||++|...... +
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~ 151 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIASTHAFK------------I 151 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECChhhcc------------C
Confidence 3689999999864211 1 112 22334555544444444 4332 345666665432111 1
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.|..-.++.+......+.+.+++.+. +..|++..+
T Consensus 152 ~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn~v 186 (260)
T PRK07063 152 IPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVNAI 186 (260)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence 22222234433333445666776664 445554444
No 190
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.0077 Score=54.76 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------- 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------- 85 (332)
+.+++.|+||+|++|.+++..|+..|. +|+++|++. ......++.... ..+..+. .-++.+ ++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999888 999999876 222333343221 2222211 122322 11
Q ss_pred cCCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHH----hhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 86 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~----~~~p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
+...|+||..+|..... ..+ ....+..|......+.+... +..+.+.+++++.-....
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 152 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------------ 152 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC------------
Confidence 24689999998853221 111 22334556555555554443 334556666666532211
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.+..-.++.+......+...++..+. + .+.+..+
T Consensus 153 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~-~i~v~~i 187 (263)
T PRK07814 153 AGRGFAAYGTAKAALAHYTRLAALDLC--P-RIRVNAI 187 (263)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHC--C-CceEEEE
Confidence 122233455543333445566666654 3 3544444
No 191
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.34 E-value=0.0029 Score=56.93 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
|+|.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5899999999999999999999888 899999875
No 192
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.32 E-value=0.00032 Score=62.25 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=93.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCC--cEEEEcCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRG--FLGQPQLENALTGM--DLVIIPAG 97 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~a--DiVi~~~g 97 (332)
|.|+||+|++|+.++..|+..++ +++.+.... ......... . ..... .....++.+++++. |.||.+++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~--~--~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL--N--VEFVIGDLTDKEQLEKLLEKANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT--T--EEEEESETTSHHHHHHHHHHHTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc--e--EEEEEeeccccccccccccccCceEEEEeec
Confidence 78999999999999999999998 655554444 222222111 1 11111 11112455667777 99999987
Q ss_pred CCC--CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 019993 98 VPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 174 (332)
Q Consensus 98 ~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~ 174 (332)
.+. .......+....|+...+.+.+.+.+... ..+|..+.. +..... ...+.....+.+...+|.+.....++.
T Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS~~~y~~~~--~~~~~e~~~~~~~~~Y~~~K~~~e~~~ 151 (236)
T PF01370_consen 75 FSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSSASVYGDPD--GEPIDEDSPINPLSPYGASKRAAEELL 151 (236)
T ss_dssp SSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGGTSSS--SSSBETTSGCCHSSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccc-cccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 653 11134566778899999999999998876 344444331 111000 000000000111223555555556666
Q ss_pred HHHHHHhCCCCCCCc-eeEEEec
Q 019993 175 TFVAEVLGLDPRDVD-VPVVGGH 196 (332)
Q Consensus 175 ~~la~~l~v~~~~v~-~~v~G~h 196 (332)
..++++.+++...++ ..++|.+
T Consensus 152 ~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 152 RDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccc
Confidence 667777676655553 4466655
No 193
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.005 Score=55.96 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++.|++.. .....++. .++..+. +-+| .+++ +
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999998 9999998762 22222221 1122111 1122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC--CCCh---hhhHhhhHHHHHHHHHHHHhh--CCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 019993 87 TGMDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~--g~~r---~~~~~~n~~~~~~i~~~i~~~--~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~ 159 (332)
...|++|..+|..... ..+. ...+..|+.....+.+.+..+ .+.+.||+++.-.... +.+.
T Consensus 79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~ 146 (261)
T PRK08265 79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------AQTG 146 (261)
T ss_pred CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------CCCC
Confidence 4679999999864322 1222 223344655444444443332 3456666665422111 1222
Q ss_pred CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.-.++.+......+.+.++..+. +..+++..+
T Consensus 147 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v 178 (261)
T PRK08265 147 RWLYPASKAAIRQLTRSMAMDLA--PDGIRVNSV 178 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence 22344433333445566666654 445554444
No 194
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.32 E-value=0.0017 Score=60.40 Aligned_cols=110 Identities=17% Similarity=0.103 Sum_probs=67.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcC--CCcEEE
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQP---QLENALT--GMDLVI 93 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~--~aDiVi 93 (332)
||.|+||+|++|+.++..|.+.++ +|+++|.... ......+... ..+..+. ..+ ++.++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999887 8888886431 1111111111 1222111 111 2334443 689999
Q ss_pred EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
.++|..... .....+.+..|+.....+++.+.++.... ++++|
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~s 120 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK-FIFSS 120 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE-EEEec
Confidence 999864321 12234456788999999999888765443 34443
No 195
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.32 E-value=0.01 Score=53.33 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=58.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCCHH---h-------hc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQLE---N-------AL 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~~---~-------a~ 86 (332)
++|.|+||+|++|+.++..|+..|. +|+++|.+.. .....++.... .++..+. .-++.. + .+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPDDEELAATQQELRALG--VEVIFFPADVADLSAHEAMLDAAQAAW 78 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4799999999999999999999987 8999997542 12222232221 1222211 112321 1 12
Q ss_pred CCCcEEEEcCCCCCC---C--CCCh---hhhHhhhHHHHHHHHHHHH
Q 019993 87 TGMDLVIIPAGVPRK---P--GMTR---DDLFNINAGIVRTLCEGIA 125 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~---~--g~~r---~~~~~~n~~~~~~i~~~i~ 125 (332)
...|+||+++|.+.. + ..+. .+.+..|+.....+.+.+.
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 125 (256)
T PRK12745 79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVA 125 (256)
T ss_pred CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHH
Confidence 468999999986421 1 1122 2334556655555544443
No 196
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.31 E-value=0.0037 Score=55.99 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------- 86 (332)
.++|.|+||+|++|+.++..|+..|+ +|+++|.+. ......++.... .++..+.. -.| .++++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999888 899999876 222233343321 12222111 122 22222
Q ss_pred CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
...|+||+.+|...... .+. ...+..|+.....+.+.+.+. .+.+.+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 35899999988642211 122 223456666666555554422 23345555554
No 197
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.30 E-value=0.0021 Score=61.78 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=46.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||+|||. |.||.+++..|...|+ ++.++|.+........-..... ... .++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence 37999999 9999999999999888 7788887762211111111111 111 1346678899999999995
No 198
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.01 Score=53.44 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE--EeCCCCHHhhcC-CCcEEEEc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG--FLGQPQLENALT-GMDLVIIP 95 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~-~aDiVi~~ 95 (332)
++|.|+||+|.+|+.++..|++.|. ++++.+.+.. .....+.........+.. .....++..++. +.|+||++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 4799999999999999999999887 8888887652 111111221111111111 111112334444 89999999
Q ss_pred CCCCC
Q 019993 96 AGVPR 100 (332)
Q Consensus 96 ~g~~~ 100 (332)
+|...
T Consensus 81 ag~~~ 85 (257)
T PRK09291 81 AGIGE 85 (257)
T ss_pred CCcCC
Confidence 98653
No 199
>PRK07069 short chain dehydrogenase; Validated
Probab=97.29 E-value=0.014 Score=52.24 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=66.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC-C--cHHHHHHHhcCCCCCeEEEEe-CCCC---HH-------hhcC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT 87 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~-~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~~ 87 (332)
||.|+||+|.+|.+++..|+..|. +|++.|.+ + ......++........+..+. .-+| +. +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999999888 89999987 3 222333333221111111110 1122 11 2235
Q ss_pred CCcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tN 138 (332)
..|+||..+|..... ..+. ...+..|+. ..+.+.+.+++... +.|+++|.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 689999999865321 1121 223455665 66777777775543 45555554
No 200
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.29 E-value=0.0098 Score=53.37 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCC-CC----------
Q 019993 16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQ---------- 81 (332)
Q Consensus 16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~-~d---------- 81 (332)
+..+.++|.|+|++|++|..++..|+..|. +|+++|++. ......++.+... ...+.....+ .+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHH
Confidence 345567899999999999999999999887 999999876 2233344543321 1111111101 11
Q ss_pred HHhhcCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 82 LENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 82 ~~~a~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
+.+.+...|+||.++|.... + ..+. ...+..|+.....+.+.+.++ .+...|++.+.
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss 152 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 152 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 12334568999999876322 1 2222 233456666544444444322 24455666654
No 201
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.0023 Score=56.78 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE--EeCCCCHHhh-------cCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG--FLGQPQLENA-------LTG 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~ 88 (332)
.++|.|+||+|.+|+.++..|++.|. +|+++|++.. .....++.... ..+.. .....+++++ +..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 45899999999999999999999888 8999998762 22223333221 11111 1111122222 236
Q ss_pred CcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 89 aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
.|+||..+|...... .+. .+.+..|......+.+.+.+. .+...+++++.
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 899999987542111 111 222345555555555544322 23445666554
No 202
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.28 E-value=0.0032 Score=58.25 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..|||+|||+ |.+|.+++..|+..+ ...+|+.+|++.. ....++.... .+.. +.+..++.++||+||++.
T Consensus 2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence 4579999999 999999999998876 2248899987541 1223332211 1222 224467789999999985
No 203
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.28 E-value=0.0072 Score=53.90 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------- 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++++++. ......++... ...+..+.. -++ +.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999888 899999876 22223334322 123332211 122 22223
Q ss_pred CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCC
Q 019993 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 140 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~ 140 (332)
.+.|+||+++|...... .+. ...+..|+.....+.+.+..+ ...+.+++++...
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~ 145 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA 145 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence 37999999988643211 121 223455655444444444432 2234455555543
No 204
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.022 Score=51.94 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=66.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCH----------HhhcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG 88 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~~~ 88 (332)
+++.|+||+|.+|..++..|+..|. +|+++++++ ......++.............+-+|. .+.+..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 3799999999999999999999887 899999876 22233334322111111000011121 122356
Q ss_pred CcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCC
Q 019993 89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV 140 (332)
Q Consensus 89 aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~ 140 (332)
.|+||+++|...... .+. ...+..|+.....+.+.+ .+....+.|++++...
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 899999998643211 122 233455665555555544 3222345666666543
No 205
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0045 Score=56.43 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
.++|.|+||+|.+|+.++..|+..|. +|+++|++. ......++.... ..+..+. +-++ ...++
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998888 899999875 222223333221 1111111 1122 22222
Q ss_pred CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCC
Q 019993 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV 140 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~ 140 (332)
...|++|..+|..... ..+. ...+..|+.....+.+...++- +++.|+++|.+.
T Consensus 85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 3569999998753211 1222 2234456655555555544321 345677776643
No 206
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.27 E-value=0.0051 Score=55.63 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~~ 88 (332)
.+++.|+||+|.+|..++..|+..|. +|++++.++.......+.... .++..+. +-++ .+++ +..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999998 899998765322222232221 1222111 1122 2222 245
Q ss_pred CcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
.|++|+.+|...... .+ ....+..|+.. .+.+.+.+.+....+.||+++...... +.+
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~ 151 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ------------GGI 151 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC------------CCC
Confidence 799999998643211 12 22334556544 444444554433346677765533211 112
Q ss_pred CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
..-.++.+......+.+.+|..+. +..|++..+
T Consensus 152 ~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v 184 (251)
T PRK12481 152 RVPSYTASKSAVMGLTRALATELS--QYNINVNAI 184 (251)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence 222345544344456666776654 444544444
No 207
>PRK06128 oxidoreductase; Provisional
Probab=97.27 E-value=0.0089 Score=55.62 Aligned_cols=115 Identities=22% Similarity=0.242 Sum_probs=69.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEe-CCCC---HHh-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL-GQPQ---LEN------- 84 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~------- 84 (332)
.++|.|+||+|.+|..++..|+..|. +|++.+.+. .......+.... .++..+. .-+| .++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999888 888876643 112222233221 1222111 1122 112
Q ss_pred hcCCCcEEEEcCCCCCCC----CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 019993 85 ALTGMDLVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN 138 (332)
.+...|++|+++|..... ..+ ....+..|+.....+++.+.++. +.+.||+++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 234689999999864211 112 23456678777777777776654 3456666654
No 208
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.26 E-value=0.016 Score=51.87 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---H-------hhcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---E-------NALT 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~~ 87 (332)
+.++|.|+||+|.+|.+++..|+..|. +|+++++++.......+.... ..+..+. +-++. . +.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999998 899999765322223233221 1222111 11221 1 1234
Q ss_pred CCcEEEEcCCCCCCCC---C---ChhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~---~r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tN 138 (332)
..|++|.++|...... . ...+.+..|+.....+.+.+.+ ....+.+|+++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999998643211 1 1223455666555555555433 222456666654
No 209
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.011 Score=52.82 Aligned_cols=117 Identities=18% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHH----HHHHHhcCCCCCeEEEEeC-CCC---HHhhc--
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG----VTADISHMDTGAVVRGFLG-QPQ---LENAL-- 86 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~----~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-- 86 (332)
+.++|.|+||+|++|+.++..|+..|+ ++++++... ... ...++.... ..+..+.. -.| +++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence 357899999999999999999999888 899988643 111 112222211 22222111 122 12222
Q ss_pred -----CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHH-h---hCCCcEEEEecCC
Q 019993 87 -----TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA-K---CCPNATVNLISNP 139 (332)
Q Consensus 87 -----~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~-~---~~p~a~viv~tNP 139 (332)
...|.||.++|..... ..+. ...+..|......+++.+. . ......+++++..
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~ 148 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV 148 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4689999999865321 1121 2335667777777777765 1 1223445555543
No 210
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.26 E-value=0.0021 Score=61.04 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
...++|.|+||+|++|+.++..|....-..+|+++++++ +.....++.+. . -.++++++.++|+||.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~------i~~l~~~l~~aDiVv~~ 222 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----K------ILSLEEALPEADIVVWV 222 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----c------HHhHHHHHccCCEEEEC
Confidence 345689999999999999999997542234899999865 22222222211 1 12567899999999999
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 143 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~ 143 (332)
++.+...-.+..++ .+..+++=.+.|=|+-
T Consensus 223 ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 223 ASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred CcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence 88764211111111 2456666678887775
No 211
>PRK06182 short chain dehydrogenase; Validated
Probab=97.25 E-value=0.0028 Score=57.93 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcC-------CCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT-------GMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aDi 91 (332)
.++|.|+||+|.+|..++..|+..|+ +|++.++++.. ..++..... ..+. ......+++++++ +.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 46899999999999999999999888 89999987521 112221111 1111 1111122223333 7899
Q ss_pred EEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 92 VIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 92 Vi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
+|+++|..... ..+ ....+..|... ++.+.+.+++... +.||+++.
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 99999864321 111 22334455543 5666666665543 45666654
No 212
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.24 E-value=0.0046 Score=55.15 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~ 86 (332)
.+++.|+||+|.+|+.++..|++.|. .|++.+.+. ......++. ..+..+. .-++. .+ .+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 888888765 222222221 1122111 11221 11 13
Q ss_pred CCCcEEEEcCCCCCCC---CC---ChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCC
Q 019993 87 TGMDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 139 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~---~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP 139 (332)
...|+||.++|..... .. +....+..|+.....+++.+.+. .+.+.+++++..
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 140 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV 140 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence 4689999999864321 11 12234456666555555544322 234566666654
No 213
>PRK08589 short chain dehydrogenase; Validated
Probab=97.23 E-value=0.026 Score=51.63 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~ 87 (332)
.+++.|+||+|.+|..++..|+..|. +|+++++++ ......++.+.. .++..+. .-++. .++ +.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999988 999999874 233334443322 1222111 11221 121 23
Q ss_pred CCcEEEEcCCCCCCCC----CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 019993 88 GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~ 156 (332)
..|++|..+|.....+ .+. ...+..|+.. .+.+.+.+.+. .+.||+++...... +
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------------~ 147 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFSGQA------------A 147 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchhhcC------------C
Confidence 5799999998753211 111 1223345443 34444444432 36677776533221 1
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.+..-.++.+......+.+.+|..++ +..|++..+
T Consensus 148 ~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v~~v 182 (272)
T PRK08589 148 DLYRSGYNAAKGAVINFTKSIAIEYG--RDGIRANAI 182 (272)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence 12112233333333456667777664 445544433
No 214
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.0072 Score=54.75 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------C
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------~ 87 (332)
++|.|+||+|.+|+.++..|+..|. +|+++|++.. +....++.... ..+..+. .-+|. .+++ .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998887 8999998762 22233343322 2222211 11232 1222 3
Q ss_pred CCcEEEEcCCCCCCCC---C-Ch---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~-~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP 139 (332)
..|+||.++|...... . +. ...+..|+.....+.+.+.++. ..+.+++++..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 6899999988643221 1 11 2235566666666666654332 23456665543
No 215
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.01 Score=53.62 Aligned_cols=35 Identities=37% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999888 899999875
No 216
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.20 E-value=0.0071 Score=54.54 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~ 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++.|++. ......++.+.. ..+..+. .-+|. ++. +
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999887 999999876 233333444322 1222111 11221 111 2
Q ss_pred CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
...|+||.++|..... ..+ ....+..|+.....+.+.+.++. +.+.||++|.
T Consensus 85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 145 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS 145 (254)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3579999999864211 111 22344556555445555444332 3355666653
No 217
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.20 E-value=0.0037 Score=56.36 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 86 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------ 86 (332)
..++|.|+||+|.+|+.++..|+..|. +|+++|+++ ......++.... ..+..+. .-++ +..++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999998888 999999876 233333443322 1122111 1122 22222
Q ss_pred -CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCC
Q 019993 87 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 140 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~ 140 (332)
...|.+|.++|..... ..+. ...+..|+.....+.+.+.++ ...+.+|+++...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence 3458999998864221 1111 223556666555555444332 2345666666543
No 218
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.012 Score=52.62 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA------- 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------- 85 (332)
+.++|.|+||+|.+|+.++..|++.|+ +|++++.++ ......++.... .++..+. .-+|. ++.
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999888 899998775 222333443321 2222211 11221 112
Q ss_pred cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 86 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
+...|+||.++|..... ..+. ...+..|......+.+.+.++ .+.+.++++|.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 25789999999864321 1122 222445666555555555433 22456666654
No 219
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0061 Score=54.95 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=77.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcC-------C
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALT-------G 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------~ 88 (332)
.+++.|+||+|.+|..++..|+..|. +|+++|++... ... . ..+..+. .-+ +.+++++ .
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~--~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD--G--RPAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc--C--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999888 89999987522 011 1 1121111 111 2223333 4
Q ss_pred CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
.|+||.++|...... .+ ....+..|+.....+.+.+.+ ....+.+|++|.-.... +.|
T Consensus 76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~ 143 (252)
T PRK07856 76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------PSP 143 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------CCC
Confidence 599999998542111 11 223445566655555555443 22335666665432211 122
Q ss_pred CCceEEeehhhHHHHHHHHHHHhC
Q 019993 159 PKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 159 ~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
..-.++.+......+.+.++..++
T Consensus 144 ~~~~Y~~sK~a~~~l~~~la~e~~ 167 (252)
T PRK07856 144 GTAAYGAAKAGLLNLTRSLAVEWA 167 (252)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhc
Confidence 223344443333456666777665
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.18 E-value=0.00071 Score=54.50 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=45.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHH-HHhc-CCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISH-MDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-dl~~-~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
||+|+||+|++|..++..|...+...-+.+++.....|... +... ......+... ..+ .+.+.++|+||.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DAD-PEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETS-GHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecc-hhHhhcCCEEEecC
Confidence 79999999999999999999877665566676654233222 1111 1112233332 124 46689999999984
No 221
>PLN02996 fatty acyl-CoA reductase
Probab=97.17 E-value=0.0063 Score=60.94 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC----cH-HHHHHHhcCC------------C----CCeE
Q 019993 16 GGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN----TP-GVTADISHMD------------T----GAVV 73 (332)
Q Consensus 16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~----~~-~~~~dl~~~~------------~----~~~v 73 (332)
++.+.+.|.|+||+|++|+.++..|+.. +-..+|+++.+.. .. ....++.+.. . ..++
T Consensus 7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv 86 (491)
T PLN02996 7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV 86 (491)
T ss_pred HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence 3456678999999999999999987764 3445777777644 11 1111111110 0 1233
Q ss_pred EEEeCCC----------C-HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh
Q 019993 74 RGFLGQP----------Q-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127 (332)
Q Consensus 74 ~~~~~~~----------d-~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~ 127 (332)
..+.+.- + +++.++++|+||++|+... ......+....|+....++.+.+.+.
T Consensus 87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322211 1 3456789999999987543 22344556788999999999988764
No 222
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.17 E-value=0.0041 Score=55.64 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 86 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------ 86 (332)
+.++|.|+||+|.+|..++..|+..|+ +|++++++. ......++.... ..+..+.. -.| +.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999888 899999875 222233343221 22332211 112 22222
Q ss_pred -CCCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 019993 87 -TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 138 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN 138 (332)
...|+||+++|.... + ..+. ...+..|+.....+.+.+ .+.. ...+|++|.
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss 142 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS 142 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence 368999999876432 1 1222 223455666555555544 3333 345555543
No 223
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.17 E-value=0.0034 Score=58.13 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=48.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||++||- |.||+..|..|+..|+ +++.+|++..+. +..+..... .. ..+..++.++||+||.+.
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEec
Confidence 58999999 9999999999999999 999999986432 232333221 11 123478999999999984
No 224
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.0051 Score=55.39 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (332)
+.++|.|+||+|.+|+.++..|++.|. +|++++++.. .....++.. ..+..+. ..++ +.+. +
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999999887 8999998752 222222221 1111111 1122 1122 2
Q ss_pred CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
...|+||.++|...... .+. ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 148 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS 148 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 36799999998643211 111 2234566666656665554432 2455666654
No 225
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.011 Score=53.84 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=62.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcC-------CCcEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT-------GMDLV 92 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aDiV 92 (332)
++|.|+||+|.+|+.++..|+..|. +|++.+++...... ..+. ..+. ......+++++++ ..|++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l 77 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGV---ELLELDVTDDASVQAAVDEVIARAGRIDVL 77 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCC---eeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4799999999999999999999887 89999987521110 0000 1111 1111122333343 46999
Q ss_pred EEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 019993 93 IIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 138 (332)
Q Consensus 93 i~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN 138 (332)
|.++|...... .+ ....+..|......+.+. +.+.. .+.||++|.
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS 132 (270)
T PRK06179 78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISS 132 (270)
T ss_pred EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence 99998753221 11 123344555444444444 44433 345666654
No 226
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.013 Score=52.99 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=59.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
+++.|+||+|.+|..++..|+..|. +|+++|.+....... ..+.. ...+. ......+..+.+...|++|+++|..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~-~~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES-NDESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh-hccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 4899999999999999999999988 899999875211111 11111 11111 1111123345677899999999864
Q ss_pred CCCCCCh---hhhHhhhHHHHHHHHHHH
Q 019993 100 RKPGMTR---DDLFNINAGIVRTLCEGI 124 (332)
Q Consensus 100 ~~~g~~r---~~~~~~n~~~~~~i~~~i 124 (332)
.....+. .+.+..|+.....+++.+
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 118 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLELF 118 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 3222222 334556665555555443
No 227
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.15 E-value=0.003 Score=62.72 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=62.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcC---CCcEEEEc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVIIP 95 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~---~aDiVi~~ 95 (332)
.+|+|||. |.+|+++|..|+..|+ +|.++|+++.. +.++..... ...+.. ..+++++++ ++|+|++.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence 48999999 9999999999999998 99999987622 222221100 112222 345666665 58988887
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 141 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~ 141 (332)
.. +-+.++++.+.+..+. |+.+||..+|-..
T Consensus 74 v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~~ 105 (470)
T PTZ00142 74 IK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEWY 105 (470)
T ss_pred eC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 31 1234444445555443 6777888776443
No 228
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.011 Score=53.20 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHh-------h
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------A 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a 85 (332)
..++|.|+||+|.+|++++..|+..|. +|+++|+++ ......++.... .++..+. +-+| ++. .
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999998 999999876 222233333211 1122111 1122 111 2
Q ss_pred cCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 019993 86 LTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 138 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN 138 (332)
+...|+||+++|.... + ..+. ...+..|+.....+.+.+.++. ....||++|.
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 2468999999986422 1 1222 2334566665666666655432 1245666654
No 229
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.02 Score=51.50 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------ 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------ 86 (332)
.++|.|+||+|.+|+.++..|+..|. ++++.+ ++. ......++.... ..+..+. +-+|. .+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887 776654 433 122222332211 1122111 11232 2222
Q ss_pred -------CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 019993 87 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (332)
Q Consensus 87 -------~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN 138 (332)
.+.|+||+++|...... .+. ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 26899999998653211 111 2334567777766777666553 2345555543
No 230
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.14 E-value=0.0037 Score=57.68 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=44.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+|||. |.+|..++..|...|+..+|+.+|+++.. ...+..... ... ..++.++ .+||+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~~-~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEEL-KKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHHH-hcCCEEEEeC
Confidence 58999999 99999999999988865589999987521 111222211 111 1244454 4699999995
No 231
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.14 E-value=0.0025 Score=59.51 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=47.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||+|||. |.+|..++..|+..|+ +|+++|+++.. +.++.... ... ..+..+++++||+||++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence 48999999 9999999999999888 89999987622 22232221 111 235578899999999984
No 232
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.14 E-value=0.00077 Score=59.58 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=72.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC------cHHH---HHHHhcCC-CCCe------EEEEeCCCCHHh
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGV---TADISHMD-TGAV------VRGFLGQPQLEN 84 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~------~~~~---~~dl~~~~-~~~~------v~~~~~~~d~~~ 84 (332)
.||+|+|. |.+|+..|..++..|+ +|.|||+.+ ++.. ..+|+... ...+ +.-+++++++.|
T Consensus 4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 48999998 9999999999999999 999999987 1121 22333221 1111 112445788999
Q ss_pred hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 019993 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 144 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t 144 (332)
..++|=.|-.++ .+.+...+++.+++++..-+. .|+.|.....+.
T Consensus 81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~-tIlaSSTSt~mp 125 (313)
T KOG2305|consen 81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPT-TILASSTSTFMP 125 (313)
T ss_pred HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCc-eEEeccccccCh
Confidence 999986655553 556788899999999887322 355666555553
No 233
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.13 E-value=0.0059 Score=56.50 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=62.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
+||+|||+ |.+|+.++..|...+. ..+|+++|.+... ....+.... ..+.. +.+..++++++|+||++..
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~---~~~~~e~~~~aDvVilavp- 73 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVEL---ADNEAEIFTKCDHSFICVP- 73 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEE---eCCHHHHHhhCCEEEEecC-
Confidence 58999999 9999999999988762 2489999986521 122222211 12222 2355677899999999852
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 142 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~ 142 (332)
...+.++++.+..+. ++..||.+.+-+..
T Consensus 74 ---------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 ---------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 223445666665544 45566666665544
No 234
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.13 E-value=0.0024 Score=58.92 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
++||+|||+ |.||++++..|++.++ ..+|+.+|+++. ....+.+.. . +... ++..+.+++||+||++.
T Consensus 2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITIT---TNNNEVANSADILILSI 71 (272)
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence 468999999 9999999999988774 357999998652 222232211 1 2221 24457789999999985
No 235
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.13 E-value=0.0019 Score=53.12 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+..++.|+|| |.+|..++..|...|. .+|.+++++.. +..+..+ ....+.... ..++.+.+.++|+||.+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVINA 82 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE-
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEEe
Confidence 34579999999 9999999999998876 37999998752 2333333 123344332 34667788999999998
Q ss_pred CCCC
Q 019993 96 AGVP 99 (332)
Q Consensus 96 ~g~~ 99 (332)
.+.+
T Consensus 83 T~~~ 86 (135)
T PF01488_consen 83 TPSG 86 (135)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 6544
No 236
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.13 E-value=0.0025 Score=60.51 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..++|+|||. |.+|+.+|..|...|. +|+.+|++.... .+. +.. ..++++++++||+|++..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~~---~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LTY---KDSVKEAIKDADIISLHV 206 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hhc---cCCHHHHHhcCCEEEEeC
Confidence 3468999999 9999999999987777 999999875210 000 111 236789999999999985
No 237
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=97.13 E-value=0.0077 Score=53.40 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=66.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 88 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~ 88 (332)
|.|+|++|.+|+.++..|++.|+ +|++++.+. ......++.+.. ..+.... +-+| +.+++ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999988 899998764 222333443322 1122111 1122 22333 34
Q ss_pred CcEEEEcCCCCCCC---CC---ChhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 019993 89 MDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 139 (332)
Q Consensus 89 aDiVi~~~g~~~~~---g~---~r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP 139 (332)
.|+||+.+|..... +. .....+..|......+.+.+.++. ..+.++++|..
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 69999998864211 11 123445677777777777666542 23456666554
No 238
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=97.12 E-value=0.017 Score=51.63 Aligned_cols=115 Identities=13% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------ 86 (332)
.+++.|+||+|.+|+.++..|+..|. ++++.+... .+....++.+.. .++..+.. -+| +.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998887 777665432 222333443321 22322211 122 22222
Q ss_pred -CCCcEEEEcCCCCCCCC------CChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 87 -TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~~g------~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
...|+||+++|...... ....+.+..|+.....+.+.+..+ ...+.+++++.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34799999998643221 112334566766666666665543 23445666654
No 239
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.019 Score=51.71 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~ 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++.++++ ......++.+.. .++..+. .-++. +++ +
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999988 899999876 233334444322 1222211 11221 122 2
Q ss_pred CCCcEEEEcCCCCC--CC--CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 87 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 87 ~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
...|++|..+|... .+ ..+. ...+..|+. ..+.+.+.+.+. ..+.||+++...... .
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~ 149 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A 149 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence 36899999998632 12 1222 233455654 444445555443 344566655422110 1
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+......+...+++.++ +..|++..+
T Consensus 150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 185 (254)
T PRK07478 150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL 185 (254)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence 233333455544444456667777664 344544433
No 240
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.11 E-value=0.0048 Score=56.01 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.+++.|+||+|.+|..++..|++.|. +|+++|+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999998 899999875
No 241
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0098 Score=53.20 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE----------NAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~ 86 (332)
.++|.|+||+|.+|+.++..|+..|. +|+++++++. .....++ . ..+..+. ..+|.+ +.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999988 8999998752 1111112 1 1222111 112221 223
Q ss_pred CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 019993 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 137 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t 137 (332)
...|+||..+|...... .+. ...+..|+.....+.+.+.++- ..+.+++.+
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46899999988643211 112 2345677777777777776542 223444443
No 242
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.10 E-value=0.01 Score=56.06 Aligned_cols=115 Identities=15% Similarity=0.180 Sum_probs=65.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE--eCCCCH-------HhhcC--
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQPQL-------ENALT-- 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~--~~~~d~-------~~a~~-- 87 (332)
..+.|+||+|.+|..+|..|+..|. +|+++++++ .+....++........+..+ .-+.+. .+.+.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 5799999999999999999999988 899999987 33344445432111122211 111121 22333
Q ss_pred CCcEEEEcCCCCCCC-----CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKP-----GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~-----g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN 138 (332)
+.|++|+.+|..... ..+. ...+..|+.....+.+. +.+. ..+.||++|.
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS 193 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIINIGS 193 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 455999999864211 1222 22345565554444444 4433 3455666654
No 243
>PRK07985 oxidoreductase; Provisional
Probab=97.09 E-value=0.03 Score=52.02 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc----HHHHHHHhcCCCCCeEEEEe-CCCCHH----------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFL-GQPQLE---------- 83 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~~---------- 83 (332)
+.+++.|+||+|.+|.+++..|+..|. +|++.+.+.. +.....+.... ..+..+. .-+|.+
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 336899999999999999999999988 8888876531 11111122211 1222111 112311
Q ss_pred hhcCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 84 NALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
+.+...|++|+.+|.... + ..+. ...+..|+.....+.+.+.++. .++.||++|..... .
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~------------~ 191 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAY------------Q 191 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhc------------c
Confidence 223567999999886321 1 1222 2335567766666666655442 34667776653211 1
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+......+.+.++..++ +..|++.++
T Consensus 192 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~i 227 (294)
T PRK07985 192 PSPHLLDYAATKAAILNYSRGLAKQVA--EKGIRVNIV 227 (294)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHh--HhCcEEEEE
Confidence 122222344443333445566666653 344544433
No 244
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.09 E-value=0.0037 Score=55.54 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
.++|.|+||+|.+|..++..|++.|+ +|.++++++. .....++.... ..+..+. .-.| +.+++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999888 7999998762 22223333221 1122111 1112 22222
Q ss_pred CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEec
Q 019993 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 137 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~t 137 (332)
...|.||.++|..... ..+. ...+..|+.....+.+.+.++ .....+|++|
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s 140 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS 140 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 3469999998753221 1121 223455666655555555432 2224555555
No 245
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.09 E-value=0.0078 Score=58.74 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCe-EEE-EeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VRG-FLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~-v~~-~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+.++|.|+||+|.+|..++..|++.|. +|+++|.++.+ ....+........ +.. .....+..+.+.+.|++|+.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 456899999999999999999999888 89999986521 1111211111111 111 111122345578999999998
Q ss_pred CCCCCCCCCh---hhhHhhhHHHHHHHHHHH
Q 019993 97 GVPRKPGMTR---DDLFNINAGIVRTLCEGI 124 (332)
Q Consensus 97 g~~~~~g~~r---~~~~~~n~~~~~~i~~~i 124 (332)
|.......+. ...+..|......+.+.+
T Consensus 254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~ 284 (406)
T PRK07424 254 GINVHGERTPEAINKSYEVNTFSAWRLMELF 284 (406)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8653333332 233455655444444443
No 246
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.008 Score=53.85 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE-eCCCCHH---h-------hc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE---N-------AL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~---~-------a~ 86 (332)
.+++.|+||+|++|.+++..|+..|. +|+++|+++ ......++.+.. ..+..+ ..-+|.+ + .+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 899999875 222223333221 111111 1122321 1 12
Q ss_pred CCCcEEEEcCCCCCC----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRK----P--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
...|+||+++|.... + ..+. ...+..|+.....+.+.+.++. +.+.++++|.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 145 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSS 145 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEec
Confidence 468999999986421 1 1121 2334567666666666655442 2345666553
No 247
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.015 Score=53.98 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------ 86 (332)
.++|.|+||+|.+|+.++..|+..|. +|++++.++. ......+.... .++..+. +-++ +.+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999888 8999998752 22222232211 2222211 1122 22222
Q ss_pred -CCCcEEEEcCCCCCC--C--CCC---hhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecC
Q 019993 87 -TGMDLVIIPAGVPRK--P--GMT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 138 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~--~--g~~---r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tN 138 (332)
...|+||.++|.... + ..+ ....+..|+.....+.+.+.++ .+.+.+|++|.
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 357999999886321 1 111 1334567777777777777654 24556666654
No 248
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.08 E-value=0.0031 Score=58.96 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC---CcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVi~~~ 96 (332)
|||+|||. |.+|+.++..|...++ +|+.+|+++.+ +..+.+.. ... ..+.++.+++ +|+|+++.
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence 58999999 9999999999998887 89999987522 22232221 121 2345566555 68999884
No 249
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.017 Score=51.69 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
.++|.|+||+|.+|+.++..|++.|. +|++++.+.. .....++. . ...+..+. +-+| ..+++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999887 8999998762 22222232 1 12222211 1123 22222
Q ss_pred CCCcEEEEcCCCC
Q 019993 87 TGMDLVIIPAGVP 99 (332)
Q Consensus 87 ~~aDiVi~~~g~~ 99 (332)
...|+||+++|..
T Consensus 80 ~~id~vi~~ag~~ 92 (252)
T PRK06138 80 GRLDVLVNNAGFG 92 (252)
T ss_pred CCCCEEEECCCCC
Confidence 3789999999864
No 250
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.07 E-value=0.013 Score=61.04 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----- 87 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----- 87 (332)
..++|.|+||+|.+|+.++..|++.|. +|+++|++. ......++........+..+. .-+| ..++++
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999888 999999876 222223333211111111111 1122 223333
Q ss_pred --CCcEEEEcCCCCCCCC---CChhh---hHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 88 --GMDLVIIPAGVPRKPG---MTRDD---LFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 88 --~aDiVi~~~g~~~~~g---~~r~~---~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
+.|+||.++|...... .+..+ .+..|+. ..+...+.+.+....+.|+++|......
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~------------ 558 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY------------ 558 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC------------
Confidence 6899999998643211 11111 1223332 3445556665544445555554321111
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhC
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
+.+..-.++.+......+.+.++..++
T Consensus 559 ~~~~~~aY~aSKaA~~~l~r~lA~el~ 585 (676)
T TIGR02632 559 AGKNASAYSAAKAAEAHLARCLAAEGG 585 (676)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 112222344444444556666777665
No 251
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.014 Score=54.15 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=49.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~ 87 (332)
++|.|+||+|.+|..++..|+..|. +|+++|++. .+....++.... ..+..+. .-+| ..++ +.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999888 999999876 222333332211 1122111 1122 2222 33
Q ss_pred CCcEEEEcCCCC
Q 019993 88 GMDLVIIPAGVP 99 (332)
Q Consensus 88 ~aDiVi~~~g~~ 99 (332)
..|++|.++|..
T Consensus 117 ~id~li~~AG~~ 128 (293)
T PRK05866 117 GVDILINNAGRS 128 (293)
T ss_pred CCCEEEECCCCC
Confidence 789999999864
No 252
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.011 Score=55.53 Aligned_cols=171 Identities=16% Similarity=0.057 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH----------hh
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE----------NA 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a 85 (332)
+.+++.|+||+|.+|..++..|+..|. +|++.++++. .....++........+..+. .-.|++ +.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999887 8999998762 22233343221112222211 112321 12
Q ss_pred cCCCcEEEEcCCCCCCCC--CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 019993 86 LTGMDLVIIPAGVPRKPG--MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g--~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~ 156 (332)
....|++|..||....+. .+ ....+..|... .+.+.+.+.+. .+.||+++.-......+-..-+.....
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~ 168 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERS 168 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccccc
Confidence 245899999998643221 11 12234445443 44555555432 345555543221110000000000011
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
++....++.+.+....+...+++.+......|.+..+
T Consensus 169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v 205 (313)
T PRK05854 169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA 205 (313)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 2333445555555555666777665444445554444
No 253
>PRK07035 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0077 Score=54.17 Aligned_cols=115 Identities=12% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~ 86 (332)
.++|.|+||+|.+|..++..|+..|. .|+++|++. ......++.+.. .....+. .-++. +++ +
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999887 899999875 233333443322 1122111 11221 122 2
Q ss_pred CCCcEEEEcCCCCC--CC--CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
...|++|..+|... .+ ..+. ...+..|+.....+.+.+.++. ..+.+++++.
T Consensus 84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 145 (252)
T PRK07035 84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVAS 145 (252)
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECc
Confidence 35799999987421 11 1222 2234555555444444443332 2356666654
No 254
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.029 Score=50.23 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=50.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~~ 87 (332)
+++.|+||+|.+|..++..|+..|. +|++.+++. ......++........+..+. +-++.+ +.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999887 899999876 222333333221112233221 122321 2245
Q ss_pred CCcEEEEcCCCCC
Q 019993 88 GMDLVIIPAGVPR 100 (332)
Q Consensus 88 ~aDiVi~~~g~~~ 100 (332)
..|+||+++|...
T Consensus 81 ~id~vi~~ag~~~ 93 (248)
T PRK08251 81 GLDRVIVNAGIGK 93 (248)
T ss_pred CCCEEEECCCcCC
Confidence 7899999998653
No 255
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0048 Score=56.68 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=64.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc--------CCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL--------TGM 89 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~--------~~a 89 (332)
++|.|+||+|.+|..++..|+..|. +|++.++++.. ..++..... ..+. . .-+| .+.++ ...
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~~-~~~~-~-Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEGL-EAFQ-L-DYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCCc-eEEE-c-cCCCHHHHHHHHHHHHHHcCCCc
Confidence 4799999999999999999999888 89999987521 112222111 1111 1 1122 11222 246
Q ss_pred cEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 90 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
|++|.++|...... .+ ....+..|+.. .+.+.+.+.+.. .+.||++|.
T Consensus 78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS 135 (277)
T PRK05993 78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS 135 (277)
T ss_pred cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence 99999988643211 11 12344566555 566666666543 345666654
No 256
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.013 Score=52.42 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=78.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCe-EE-EEeCCCCHHhhcCC----CcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VR-GFLGQPQLENALTG----MDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~----aDiVi~ 94 (332)
.++.|+||+|.+|..++..|+..|. +|+++|+++... .++.+...... +. ..+...+.+++++. .|.+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4799999999999999999999888 899999875211 11211110111 11 11111223333333 477888
Q ss_pred cCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeeh
Q 019993 95 PAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM 167 (332)
Q Consensus 95 ~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ 167 (332)
.+|...... .+. ...+.-|+.....+.+.+..+- +...+++++..... .+.|..-.++.+.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y~asK 145 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE------------LALPRAEAYGASK 145 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc------------cCCCCCchhhHHH
Confidence 876432111 122 2345677777777777766543 34456655442211 1233333455554
Q ss_pred hhHHHHHHHHHHHh
Q 019993 168 LDVVRANTFVAEVL 181 (332)
Q Consensus 168 ld~~r~~~~la~~l 181 (332)
.....+.+.++..+
T Consensus 146 ~a~~~~~~~l~~e~ 159 (240)
T PRK06101 146 AAVAYFARTLQLDL 159 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445666666544
No 257
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.03 E-value=0.01 Score=51.01 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=29.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
||+|+|+ |.+|+.++..|+..|.. +++|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg-~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG-NLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence 6899999 99999999999998874 899999875
No 258
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.03 E-value=0.0083 Score=56.63 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=68.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHH-----HHHhcCC-----CC-CeEEEEeCC----------C
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHMD-----TG-AVVRGFLGQ----------P 80 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-----~dl~~~~-----~~-~~v~~~~~~----------~ 80 (332)
+|.|+||+|++|++++..|+..+...+|+++.+....... ..+.... .. .++..+.+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 5899999999999999999988753478888876521111 1111100 00 234332211 1
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCc
Q 019993 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131 (332)
Q Consensus 81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a 131 (332)
++.+..+++|+||++++... ......++...|+.....+.+...+.....
T Consensus 81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~ 130 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP 130 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence 23455688999999987542 122334555688888888888887765444
No 259
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.02 E-value=0.011 Score=53.38 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENA------- 85 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------- 85 (332)
.+.+++.|+||+|.+|++++..|+..|. +|+++|+++ ......++.... ..+..+. .-+|. .++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999999988 899999875 222223333221 1222111 11221 222
Q ss_pred cCCCcEEEEcCCCCC--CC--CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 019993 86 LTGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 154 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~ 154 (332)
+...|++|.++|... .+ ..+. ...+..|+. ..+.+.+.+.+.. .+.||++|.....
T Consensus 82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~------------ 148 (260)
T PRK12823 82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATR------------ 148 (260)
T ss_pred cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCcccc------------
Confidence 246899999987532 11 1122 122334443 4445556555433 3456666542210
Q ss_pred CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+ +..-.++.+......+.+.++..+. +..+++..+
T Consensus 149 -~-~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 183 (260)
T PRK12823 149 -G-INRVPYSAAKGGVNALTASLAFEYA--EHGIRVNAV 183 (260)
T ss_pred -C-CCCCccHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence 0 1112355554444456667776663 344544443
No 260
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.052 Score=49.42 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=67.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------CC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TG 88 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------~~ 88 (332)
+.+.|+||+|.+|..++..|+..|. +|+++|++. +.....++.... ..++..+. +-+| .++.+ ..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4689999999999999999999998 899999876 223333343221 12222111 1122 22222 35
Q ss_pred CcEEEEcCCCCCCC---CCChh---hhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCC
Q 019993 89 MDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 89 aDiVi~~~g~~~~~---g~~r~---~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP 139 (332)
.|++|.++|.+... ..+.. ..+..| ....+.+.+.+++.. .+.||++|..
T Consensus 86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~ 145 (263)
T PRK08339 86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV 145 (263)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence 79999999865321 12222 223334 445666677765443 4566666553
No 261
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0034 Score=56.29 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=46.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH-HhcCCCCCeEEEEeCCCC---HHhh-cCCCcEEEEc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP 95 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d-l~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVi~~ 95 (332)
|+|+|+|+ |.+|+++|..|...|+ +++++|.++.. +.. +.+.. ...+... ..+| +++| +.+||.+|.+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~-~~~~v~g-d~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADEL-DTHVVIG-DATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhc-ceEEEEe-cCCCHHHHHhcCCCcCCEEEEe
Confidence 68999999 9999999999999999 99999998721 111 11111 1121111 1223 3343 6888999998
Q ss_pred C
Q 019993 96 A 96 (332)
Q Consensus 96 ~ 96 (332)
-
T Consensus 74 t 74 (225)
T COG0569 74 T 74 (225)
T ss_pred e
Confidence 4
No 262
>PRK08226 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.015 Score=52.68 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~ 87 (332)
.+++.|+||+|.+|+.++..|+..|. +|+++++++ ......++.... .++..+. .-++ .++. +.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999888 899999876 222223332211 1222211 1122 2222 23
Q ss_pred CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
..|+||.++|..... ..+ ....+..|+.....+.+.+.++. ..+.+++++.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS 141 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS 141 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 569999999863211 111 22235566665555555544332 2345555543
No 263
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.01 E-value=0.0068 Score=53.88 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeC-CCC---HHhh------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENA------ 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a------ 85 (332)
++++|.|+||+|.+|+.++..|++.|+ ++++...... .....++.... ..+..+.. -.| +.++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHH
Confidence 446899999999999999999999988 7666554431 11222222211 22222111 112 1222
Q ss_pred -cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHH
Q 019993 86 -LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI 124 (332)
Q Consensus 86 -~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i 124 (332)
+.+.|.||+++|...... .+. .+.+..|+.....+.+.+
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~ 126 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAV 126 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 246799999998543211 122 233455666665555555
No 264
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.01 E-value=0.009 Score=52.63 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----c--------------H--HHHHHHhcCCCCCeEEEEeC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T--------------P--GVTADISHMDTGAVVRGFLG 78 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~--------------~--~~~~dl~~~~~~~~v~~~~~ 78 (332)
..||+|+|+ |.+|+.++..|+..|. .+|.++|.+. + + ..+..+.......++..+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 358999999 9999999999999886 4899999874 0 1 11123333322334433221
Q ss_pred C---CCHHhhcCCCcEEEEcC
Q 019993 79 Q---PQLENALTGMDLVIIPA 96 (332)
Q Consensus 79 ~---~d~~~a~~~aDiVi~~~ 96 (332)
. .+..+.++++|+||.+.
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCT 119 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECC
Confidence 1 23445689999999884
No 265
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.01 E-value=0.004 Score=51.75 Aligned_cols=118 Identities=20% Similarity=0.223 Sum_probs=70.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH-----HhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-----ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d-----l~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
|+|+|+ |.+|..+|..|.+.+. +|.+++..+ ...... +........+.......+..+..+.+|+||++.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 9999999999999888 999999765 212111 1111101112211111221246799999999952
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE-eeh
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTM 167 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG-~~~ 167 (332)
.. -..+..+.++.+. |+..|+.+-|=++..- .+.+. +|+.++++ ++.
T Consensus 77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~ 125 (151)
T PF02558_consen 77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT 125 (151)
T ss_dssp GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence 11 1234556677666 6678888889877663 23333 46667765 454
No 266
>PRK06949 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.0096 Score=53.63 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.+.++|.|+||+|.+|+.++..|+..|. +|+++++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3457899999999999999999999887 899999876
No 267
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.99 E-value=0.071 Score=48.22 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhh------
Q 019993 19 AGFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA------ 85 (332)
Q Consensus 19 ~~~kI~IiGa~G-~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a------ 85 (332)
+.+++.|+||+| .+|..++..|+..|. +|++.|.+. ......++.......++..+.. -++ .+++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999977 599999999999988 799999876 2222333432111122322211 122 1122
Q ss_pred -cCCCcEEEEcCCCC
Q 019993 86 -LTGMDLVIIPAGVP 99 (332)
Q Consensus 86 -~~~aDiVi~~~g~~ 99 (332)
+...|++|.++|..
T Consensus 94 ~~g~id~li~~ag~~ 108 (262)
T PRK07831 94 RLGRLDVLVNNAGLG 108 (262)
T ss_pred HcCCCCEEEECCCCC
Confidence 24679999999864
No 268
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.99 E-value=0.026 Score=50.10 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 85 (332)
.++|.|+||+|++|+.++..|++.|+ +|++...+.. .....++.... ..+..+. .-.+ +.++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999888 7767665542 22222332221 1222111 1112 1122
Q ss_pred cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 86 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
+.+.|.||+++|...... .+. ...+..|+.....+.+.+.++. +.+.++++|.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 246899999988643211 111 1234456666666666666543 2345666554
No 269
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.99 E-value=0.021 Score=52.05 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCH----------HhhcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL----------ENALT 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~~ 87 (332)
.++|.|+||+|.+|..++..|+..|. .|++.++++. .....++.. ...... .-+|. .+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~-D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGL----VVGGPL-DVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcc----ceEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999888 8999998752 222222221 111110 11121 12235
Q ss_pred CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP 139 (332)
+.|++|.++|...... .+ ....+..|+.. .+.+.+.+.+. +.+.|+++|..
T Consensus 78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 138 (273)
T PRK07825 78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASL 138 (273)
T ss_pred CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence 7899999998643211 11 12234455543 34444444433 34566666543
No 270
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.004 Score=57.02 Aligned_cols=111 Identities=15% Similarity=0.032 Sum_probs=62.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTGM 89 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~~a 89 (332)
++|.|+||+|.+|++++..|+..|. +|++.+.+... ..++.+.. ...+..+. .-+| +.+. +...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTAT--LADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999887 89999987521 11121111 01111111 1122 1111 2467
Q ss_pred cEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEec
Q 019993 90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~t 137 (332)
|.||+++|...... .+ ....+..|+... +.+.+.+++...+ .+|++|
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 99999998753211 11 223345566554 4444445544333 455554
No 271
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.014 Score=54.41 Aligned_cols=171 Identities=20% Similarity=0.146 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA------- 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------- 85 (332)
+.++|.|+||+|.+|+.++..|+..|. +|++++++.. .....++........+..+. .-.|. +++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 346899999999999999999999887 8999988752 22223333211112232221 11222 111
Q ss_pred cCCCcEEEEcCCCCCCCC-CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCch-HHHHHHHHHHhCC
Q 019993 86 LTGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNST-VPIAAEVFKKAGT 156 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g-~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~-t~~~~~~~~~~~~ 156 (332)
+...|++|++||....+. .+ ....+..|... .+.+.+.+++. +.+.||++|...... ...-..-......
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~~~~~~~ 171 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAAIHFDDLQWERR 171 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCCCCccccCcccC
Confidence 235899999998642221 11 12234555554 56666666544 345666665422110 0000000000001
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G 194 (332)
+++...++.+.+....+.+.+++.+. +..++..++.
T Consensus 172 ~~~~~~Y~~SK~a~~~~~~~la~~l~--~~~i~v~~v~ 207 (306)
T PRK06197 172 YNRVAAYGQSKLANLLFTYELQRRLA--AAGATTIAVA 207 (306)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhh--cCCCCeEEEE
Confidence 22233455555555566777777764 3334444443
No 272
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.98 E-value=0.015 Score=52.79 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~ 86 (332)
.+++.|+||+|.+|..++..|+..|. ++++.|.+. ......++.... .++..+. +-+|. ++ .+
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35799999999999999999999887 899998775 222333343221 1222211 11222 11 22
Q ss_pred CCCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 019993 87 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~ 156 (332)
...|++|.++|.... + ..+. ...+..|..... .+.+.+.+ ...+.|++++...... +
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~------------~ 152 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSEL------------G 152 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccccC------------C
Confidence 457999999986421 1 1111 222344544333 34444433 2356677766543221 1
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.+....++.+...-..+.+.+++.++ +..|++..+
T Consensus 153 ~~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v 187 (265)
T PRK07097 153 RETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI 187 (265)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence 22233455543333456666776664 344544433
No 273
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.011 Score=54.02 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=64.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~ 87 (332)
++|.|+||+|.+|+.++..|+..|. +|++.|++. .+....++.... .++..+. .-+|. .+. +.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999888 899999876 222333343322 1222111 11222 222 23
Q ss_pred CCcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tN 138 (332)
..|++|.++|..... ..+. ...+..|+. ..+.+.+.+++.. .+.|+++|.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS 136 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS 136 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence 689999998864321 1111 123445543 4444555555443 345666554
No 274
>PRK12742 oxidoreductase; Provisional
Probab=96.98 E-value=0.012 Score=52.35 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHH---hh---cCCCcEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLE---NA---LTGMDLVI 93 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~---~a---~~~aDiVi 93 (332)
.++|.|+||+|.+|+.++..|+..|. ++++.+..... ...++.... ....... ..+|.+ +. +...|++|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEEE
Confidence 45899999999999999999999888 88887654311 111121110 1111111 112221 22 34589999
Q ss_pred EcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee
Q 019993 94 IPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT 166 (332)
Q Consensus 94 ~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~ 166 (332)
.++|...... .+. ...+..|+.....+...+.++. +.+.+|+++.-.... ...+....++.+
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~s 149 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAAS 149 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHHh
Confidence 9998653211 111 2334456555544444443332 345566654422111 012333456665
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 167 MLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 167 ~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
......+...+++.++ +..+++..+
T Consensus 150 Kaa~~~~~~~la~~~~--~~gi~v~~v 174 (237)
T PRK12742 150 KSALQGMARGLARDFG--PRGITINVV 174 (237)
T ss_pred HHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence 4444556667777764 334544333
No 275
>PLN02256 arogenate dehydrogenase
Probab=96.97 E-value=0.0076 Score=56.57 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-CCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVi~~~ 96 (332)
+.+||+|||+ |.+|..++..|...|. +|+.+|.+.....+.++ . . ..+ ++.++.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g--v--~~~---~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G--V--SFF---RDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C--C--eee---CCHHHHhhCCCCEEEEec
Confidence 4579999998 9999999999988776 89999987522222211 1 1 111 3455655 4799999985
No 276
>PRK12743 oxidoreductase; Provisional
Probab=96.97 E-value=0.051 Score=49.03 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------c
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~ 86 (332)
.+|.|+||+|.+|+.++..|+..|. +|++++... ......++.... ..+..+. +-++.+ .+ +
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4799999999999999999999988 888875433 222223333222 1222211 112211 11 2
Q ss_pred CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tN 138 (332)
...|++|+++|...... .+ ....+..|+.....+.+.+.+ ....+.||++|.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 35799999988643211 11 123344555555555544433 333456666655
No 277
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.97 E-value=0.024 Score=51.79 Aligned_cols=75 Identities=23% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (332)
.+++.|+||+|.+|+.++..|+..|. +|+++|++. .+....++.+.. .++..+. .-.| ..++ +
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999988 899999875 233333343221 1222211 1122 1111 2
Q ss_pred CCCcEEEEcCCC
Q 019993 87 TGMDLVIIPAGV 98 (332)
Q Consensus 87 ~~aDiVi~~~g~ 98 (332)
...|++|.++|.
T Consensus 86 g~id~li~~ag~ 97 (278)
T PRK08277 86 GPCDILINGAGG 97 (278)
T ss_pred CCCCEEEECCCC
Confidence 478999999885
No 278
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.96 E-value=0.0046 Score=57.89 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC---CcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVi~~~ 96 (332)
|||+|||. |.+|+.++..|+..++ +|.++|+++.. +.++.+.. ... ..+..+.++. +|+|+++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 58999999 9999999999999887 89999987522 22233221 121 1234455554 69999874
No 279
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.96 E-value=0.01 Score=52.73 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..||+|+|+ |.+|+.++..|+..|.. ++.++|.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg-~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVG-NLKLVDFDV 62 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence 358999999 99999999999998874 899999883
No 280
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.96 E-value=0.0023 Score=58.18 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEccCC--cH------HHHHHHhcCCCCCeEEEEeCCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TP------GVTADISHMDTGAVVRGFLGQPQ 81 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~----~~~-----~ei~L~D~~~--~~------~~~~dl~~~~~~~~v~~~~~~~d 81 (332)
+..||++.|| |..|..++..|... |.- .+++++|.+- .. .....+.+....... ..+
T Consensus 24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~-----~~~ 97 (255)
T PF03949_consen 24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKD-----WGS 97 (255)
T ss_dssp GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------SS
T ss_pred HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccc-----ccC
Confidence 3469999999 99999999877654 763 7899999875 11 122233333211111 137
Q ss_pred HHhhcCCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC--chHH
Q 019993 82 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP 145 (332)
Q Consensus 82 ~~~a~~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~--~~t~ 145 (332)
+.++++++ |++|=+.+.+ | -+.+++.+.|.+++++.+|+-.|||.. -.++
T Consensus 98 L~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp HHHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred HHHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 89999999 9999886644 2 145688999999999999988899997 6654
No 281
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.95 E-value=0.019 Score=51.85 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~ 86 (332)
.++|.|+||+|.+|+.++..|+..|. +++++|.+. ......++.+.. .++..+. +-++. .+ .+
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887 899998865 222233343321 1222111 11222 12 23
Q ss_pred CCCcEEEEcCCCCCC--CCCChhh---hHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRK--PGMTRDD---LFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~--~g~~r~~---~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
...|++|.++|.... ...+..+ .+..|+.....+.+.+..+ .+.+.+|++|.
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 146 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 457999999885321 1222222 2456666655555555432 22345555544
No 282
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.95 E-value=0.0052 Score=56.59 Aligned_cols=101 Identities=22% Similarity=0.284 Sum_probs=71.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC----CC-----CcEEEEEccCC--cH------HHHHHHhcCCCCCeEEEEeCCCCH
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVN--TP------GVTADISHMDTGAVVRGFLGQPQL 82 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~----~~-----~~ei~L~D~~~--~~------~~~~dl~~~~~~~~v~~~~~~~d~ 82 (332)
..||+|.|| |..|..++..|... |+ ...++++|.+- .. .....+.+.. .. . ...++
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~~--~---~~~~L 97 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-EE--K---EGKSL 97 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-Cc--c---cCCCH
Confidence 469999999 99999999877654 65 25899999875 11 1111222211 11 1 13578
Q ss_pred HhhcC--CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 019993 83 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (332)
Q Consensus 83 ~~a~~--~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~ 141 (332)
.++++ ++|++|=+.+.+ | -+.+++.+.|.+++++.+|+-.|||..
T Consensus 98 ~e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred HHHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 99999 999998775433 2 134588899999999999988899986
No 283
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.95 E-value=0.0064 Score=52.27 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=62.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
|||+||||+|.+|+.++...+.+|+ |+..+=+++.+-.+ + +..+...-..+ ..+.+.+++.|-|.||.+-|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~-~~~~i~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--R-QGVTILQKDIF-DLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--c-ccceeeccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999999 89888877622111 0 11000011112 12334578999999999866543
Q ss_pred CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
++.. ..-.+....+...++.. -...++++.
T Consensus 75 -~~~~-----~~~~k~~~~li~~l~~a-gv~RllVVG 104 (211)
T COG2910 75 -SDND-----ELHSKSIEALIEALKGA-GVPRLLVVG 104 (211)
T ss_pred -CChh-----HHHHHHHHHHHHHHhhc-CCeeEEEEc
Confidence 1211 11233344555555532 355666663
No 284
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.95 E-value=0.013 Score=52.91 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------- 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------- 87 (332)
.++|.|+||+|.+|..++..|+..|. +|++++.++ .......+.... ..+..+. ..++ .++.++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999888 899998874 222222232221 1222211 1122 222232
Q ss_pred CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP 139 (332)
..|++|+++|..... ..+ ....+..|+.....+.+.+.++. ..+.+++++..
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 151 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASM 151 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 679999998864311 111 22334556555444444433322 23556666553
No 285
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.95 E-value=0.014 Score=52.35 Aligned_cols=153 Identities=11% Similarity=0.055 Sum_probs=79.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcC-------C-
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALT-------G- 88 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------~- 88 (332)
++|.|+||+|.+|+.++..|+..|. +|++.+.+.. ....++.+.. ..++..+. +-+ ++.++++ .
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSE-DAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCH-HHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999999999887 8887665431 1111121110 01222111 111 2223332 2
Q ss_pred CcEEEEcCCCCCC-------C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHH
Q 019993 89 MDLVIIPAGVPRK-------P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKK 153 (332)
Q Consensus 89 aDiVi~~~g~~~~-------~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~ 153 (332)
.|++|..+|.... + ..+. ...+..|+.....+.+.+.++ ...+.+++++......
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---------- 151 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN---------- 151 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence 8999999875211 0 1111 223455655545554444322 2245666666432111
Q ss_pred hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 019993 154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 191 (332)
Q Consensus 154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~ 191 (332)
..++.-.++.+.....++.+.+++.++ +..+++.
T Consensus 152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~ 185 (253)
T PRK08642 152 --PVVPYHDYTTAKAALLGLTRNLAAELG--PYGITVN 185 (253)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence 112223466655555667777777765 3445433
No 286
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.032 Score=50.56 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=66.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh------cC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------LT 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------~~ 87 (332)
.++|.|+||+|.+|..++..|+..|. +|+++++++ ......++.. ...+..+. +-.|.+ +. +.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 45899999999999999999999887 899999876 2222223311 12222211 112321 11 35
Q ss_pred CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
..|+||.++|...... .+. ...+..|+.....+.+.+.++. +.+.+++++.
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS 139 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS 139 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 6799999998653211 111 2334566666555555554332 2355666654
No 287
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.034 Score=50.10 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------C
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~ 87 (332)
.++|.|+||+|.+|..++..|++.|. ++++.+.++. .....++.... ..+..+. .-++ +..++ .
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999987 8888888762 22233343222 1222211 1122 22223 2
Q ss_pred CCcEEEEcCCCCCCCCC-----ChhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEec
Q 019993 88 GMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS 137 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~t 137 (332)
..|+||.++|....... +....+..|+.....+.+...++. ..+.+++++
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 57999999986432221 122334566665555555544332 234455544
No 288
>PRK08219 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0089 Score=52.60 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcC---CCcEEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALT---GMDLVII 94 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~---~aDiVi~ 94 (332)
+++|.|+||+|++|+.++..|++. + +|+++|++... ..++.+......+.. .....++.++++ +.|+||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999999887 5 89999986521 112221110111111 111123344444 5899999
Q ss_pred cCCCC
Q 019993 95 PAGVP 99 (332)
Q Consensus 95 ~~g~~ 99 (332)
++|..
T Consensus 78 ~ag~~ 82 (227)
T PRK08219 78 NAGVA 82 (227)
T ss_pred CCCcC
Confidence 98864
No 289
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0091 Score=53.25 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhc---CCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL---TGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~---~~aDiVi~~ 95 (332)
.+++.|+||+|.+|..++..|+..|+ +|++++++.... .++........+. ..+...+..+++ ...|+||..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 46899999999999999999999888 899999865211 1121111001111 111111222333 357999999
Q ss_pred CCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC----CCcEEEEecC
Q 019993 96 AGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC----PNATVNLISN 138 (332)
Q Consensus 96 ~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~----p~a~viv~tN 138 (332)
+|..... ..+. ...+..|+.....+.+.+.+.. ..+.++++|.
T Consensus 85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 8864321 1122 2234456666666665555432 2356666653
No 290
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.026 Score=53.50 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 85 (332)
+.++|.|+||+|.+|..++..|+..|. +|+++++++ .+....++.... .++..+. .-+| .+++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999988 899999876 233333443322 2222111 1123 2222
Q ss_pred cCCCcEEEEcCCCCCCC---CCChhh---hHhhh----HHHHHHHHHHHHhhCCCcEEEEecC
Q 019993 86 LTGMDLVIIPAGVPRKP---GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~---g~~r~~---~~~~n----~~~~~~i~~~i~~~~p~a~viv~tN 138 (332)
+...|++|..+|..... ..+..+ .+..| +...+.+.+.+.+. ..+.||+++.
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS 144 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS 144 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 23689999998864211 112111 22333 44555566666544 2355666654
No 291
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.01 Score=53.46 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=62.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC-------
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENALT------- 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~------- 87 (332)
++|.|+||+|.+|..++..|++.|. +|+++|++.. +....++.. ..+..+. .-.|. ..++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGD----ARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998887 8999998752 222233321 1122111 11222 22232
Q ss_pred CCcEEEEcCCCCCCCC---CChh---hhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~~r~---~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
..|+||.++|...... .+.. ..+..|......+.+.+... .+.+.+++++.
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 136 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS 136 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 5799999988643211 1111 12345555555555554322 23445666654
No 292
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.054 Score=48.68 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhh
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a 85 (332)
.+++.|+||+|.+|.+++..|+..|. +|++.+... ......++..... ....+. .-++. .+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGG--SAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEecccCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999998 888875433 2223333432211 111100 01111 111
Q ss_pred ------cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHH
Q 019993 86 ------LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK 152 (332)
Q Consensus 86 ------~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~ 152 (332)
....|++|..+|..... ..+. ...+..|+.....+.+.+.+.. ..+.||++|.-....
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 150 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--------- 150 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc---------
Confidence 12689999999864211 1121 2334466555555555444332 346677665443211
Q ss_pred HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+......+.+.++..++ +..+++..+
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~girvn~v 186 (252)
T PRK12747 151 ---SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI 186 (252)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCEEEEE
Confidence 122222344444444556667777665 344544333
No 293
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.91 E-value=0.0081 Score=56.46 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENALT------ 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~------ 87 (332)
.++|.|+||+|.+|..++..|+..|. +|++++++.. .....++... ...+..+. .-+|. +++++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45799999999999999999999887 8999998762 2223334221 11222211 11222 22222
Q ss_pred -CCcEEEEcCCCCCC----CCCCh---hhhHhhhHHHHHHH----HHHHHhhCC-CcEEEEec
Q 019993 88 -GMDLVIIPAGVPRK----PGMTR---DDLFNINAGIVRTL----CEGIAKCCP-NATVNLIS 137 (332)
Q Consensus 88 -~aDiVi~~~g~~~~----~g~~r---~~~~~~n~~~~~~i----~~~i~~~~p-~a~viv~t 137 (332)
..|++|+.||.... ...+. ...+..|......+ .+.+.+... .+.||++|
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 48999999985321 11222 23345666544444 444443332 24566554
No 294
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.90 E-value=0.0061 Score=49.94 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-------------------HH--HHHHHhcCCCCCeEEEEeC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------------------PG--VTADISHMDTGAVVRGFLG 78 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-------------------~~--~~~dl~~~~~~~~v~~~~~ 78 (332)
..||+|+|+ |.+|+.++..|+..|. .++.|+|.+.. +. ....+.......++..+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 359999999 9999999999999887 49999998751 01 1122332222345554321
Q ss_pred C---CCHHhhcCCCcEEEEc
Q 019993 79 Q---PQLENALTGMDLVIIP 95 (332)
Q Consensus 79 ~---~d~~~a~~~aDiVi~~ 95 (332)
. .+..+.++++|+||.+
T Consensus 80 ~~~~~~~~~~~~~~d~vi~~ 99 (135)
T PF00899_consen 80 KIDEENIEELLKDYDIVIDC 99 (135)
T ss_dssp HCSHHHHHHHHHTSSEEEEE
T ss_pred ccccccccccccCCCEEEEe
Confidence 1 2244667899999988
No 295
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.90 E-value=0.029 Score=50.65 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=66.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~ 88 (332)
.+.+.|+|++|.+|..++..|+..|. +|+++|..+......++.... ..+..+. .-+| ..+.+ ..
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999988 899988765332233333221 1222211 1122 22222 36
Q ss_pred CcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 019993 89 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 138 (332)
Q Consensus 89 aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN 138 (332)
.|++|.++|..... ..+ ....+..|+.....+.+. +.+..+.+.++++|.
T Consensus 86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 89999999874311 112 233455666554444444 433334566766654
No 296
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.90 E-value=0.018 Score=54.08 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC-------CCCC-eEEEEeCCCCHHhhcCCCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-------DTGA-VVRGFLGQPQLENALTGMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-------~~~~-~v~~~~~~~d~~~a~~~aDi 91 (332)
.|||+|+|+ |.||+.++..|...|. +|.++++.+. ....+... .... .+.... . + .+.....|+
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~--~~~~i~~~~Gl~i~~~g~~~~~~~~~-~-~-~~~~~~~D~ 73 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQ--RLAAYQQAGGLTLVEQGQASLYAIPA-E-T-ADAAEPIHR 73 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechH--HHHHHhhcCCeEEeeCCcceeeccCC-C-C-cccccccCE
Confidence 479999999 9999999999998887 8999998531 11112111 0000 111111 1 1 133568899
Q ss_pred EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 019993 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (332)
Q Consensus 92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~ 165 (332)
||++.-. . -..+..+.+..+. ++..|+.+-|=++..-. ++++ +|.+++++-
T Consensus 74 viv~vK~---------------~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~-----l~~~--~~~~~v~~g 125 (305)
T PRK05708 74 LLLACKA---------------Y-DAEPAVASLAHRLAPGAELLLLQNGLGSQDA-----VAAR--VPHARCIFA 125 (305)
T ss_pred EEEECCH---------------H-hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHH-----HHHh--CCCCcEEEE
Confidence 9998421 1 1234445555544 78888888898887643 2343 566677654
No 297
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.021 Score=50.50 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=31.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+++.|+||+|.+|+.++..|+..|. +|+++|+++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999999888 999999876
No 298
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.90 E-value=0.00074 Score=62.72 Aligned_cols=97 Identities=23% Similarity=0.263 Sum_probs=57.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
|||.|+||+|++|+.+...|...++ +++.++..+ .|+.+.. .+. ++-+. ...|+||++|+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence 7999999999999999999998887 888887653 1111110 000 11121 25789999987642
Q ss_pred CC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 019993 101 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136 (332)
Q Consensus 101 ~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~ 136 (332)
.. .........-|......+++...+. ++.+|.+
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~ 99 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHI 99 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEe
Confidence 11 1234455677889999999988865 4555554
No 299
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.89 E-value=0.004 Score=58.51 Aligned_cols=121 Identities=22% Similarity=0.238 Sum_probs=72.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHH---HHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~---dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+|+|+ |.||+-++..|.+.|. .|.++-+.+. +.... .+.+........... .++ .+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence 69999999 9999999999999884 6666665431 11111 111111100111111 223 46778999999995
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce-EEeehhh
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL-LGVTMLD 169 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv-iG~~~ld 169 (332)
-. --..+..+.+..+. |+.+|+..=|=.+.. +.+++. +|.+++ .|+|...
T Consensus 76 Ka----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~~--~~~~~il~G~~~~~ 127 (307)
T COG1893 76 KA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRKI--LPKETVLGGVTTHG 127 (307)
T ss_pred cc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHHh--CCcceEEEEEeeee
Confidence 21 12345666677666 566777777888776 333443 555555 4676433
No 300
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.89 E-value=0.0068 Score=50.48 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+.++|+|+|+ |.+|..++..|...+ ..++.++|.+.. ...+.++.... .... ..+.++.++++|+||++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINT 88 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeC
Confidence 44579999999 999999999998876 348999998762 22233332110 0111 12455668999999999
Q ss_pred CCCC
Q 019993 96 AGVP 99 (332)
Q Consensus 96 ~g~~ 99 (332)
...+
T Consensus 89 ~~~~ 92 (155)
T cd01065 89 TPVG 92 (155)
T ss_pred cCCC
Confidence 6544
No 301
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.89 E-value=0.034 Score=49.86 Aligned_cols=112 Identities=17% Similarity=0.282 Sum_probs=64.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG 88 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~ 88 (332)
++.|+||+|.+|..++..|++.|. +|++++.++ .+....++.... ..+..+. .-+|. .++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999887 899999875 222333343322 2222211 11231 122 235
Q ss_pred CcEEEEcCCCCCC-C--CCChh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEec
Q 019993 89 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 89 aDiVi~~~g~~~~-~--g~~r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~t 137 (332)
.|+||+++|.... + +.+.. ..+..|+.. ++.+.+.+.+...++.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 6999999886321 1 22222 224455443 344555555544445666554
No 302
>PRK05855 short chain dehydrogenase; Validated
Probab=96.87 E-value=0.05 Score=54.89 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh------
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------ 85 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------ 85 (332)
.+.+++.|+||+|.+|..++..|+..|. +|++.+++. ....+.++.... ..+..+. .-+|.+ +.
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3447899999999999999999999998 899999876 223333343221 1222211 112321 11
Q ss_pred -cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 019993 86 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 86 -~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP 139 (332)
+...|++|.++|..... ..+. ...+..|+.. .+.+.+.+.+....+.||++|.-
T Consensus 389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~ 453 (582)
T PRK05855 389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA 453 (582)
T ss_pred hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 23579999999875321 1122 2233456443 44455555555545667776553
No 303
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=96.87 E-value=0.017 Score=51.76 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=64.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENALT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~ 87 (332)
++|.|+||+|++|+.++..|+..|. +|++++++.. .....++.... .++..+. .-.|. .+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3799999999999999999999888 8999998762 12222232211 1222211 11222 23356
Q ss_pred CCcEEEEcCCCCCC-CC--CCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRK-PG--MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~-~g--~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN 138 (332)
+.|+||..++.... +. .+. ......|......+.+.+ ++.. ...++++|.
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss 137 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS 137 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence 78999999886421 11 111 223345655544454444 4333 334555554
No 304
>PRK09242 tropinone reductase; Provisional
Probab=96.87 E-value=0.058 Score=48.61 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC----------HHhhc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d----------~~~a~ 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++++++. .+....++.......++..+.. -.+ ..+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999888 899999876 2333334433211122322111 112 11234
Q ss_pred CCCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN 138 (332)
...|+||.++|.... + ..+. ...+..|+.....+.+. +.+. +.+.+|++|.
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 147 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS 147 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence 567999999986321 1 1122 22344555544444444 4333 3455666654
No 305
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.86 E-value=0.012 Score=52.08 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=66.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
+||.|||. |.+|..+...+.... .+.-+.+||.+..+.. .+...-..+. .+++++.+.+.|++|.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 58999998 999999998887663 3456788998763222 2222211111 1356677799999999984
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~ 141 (332)
.+.+++++.++-+.+.|.+|+-++--+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 5678899999998888886665544443
No 306
>PRK06196 oxidoreductase; Provisional
Probab=96.86 E-value=0.013 Score=54.97 Aligned_cols=111 Identities=21% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCH---Hhh-------cC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~---~~a-------~~ 87 (332)
.++|.|+||+|.+|..++..|+..|. +|++.+++.. .....++.... .+.. .-+|. +++ +.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~--Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVML--DLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEc--cCCCHHHHHHHHHHHHhcCC
Confidence 35799999999999999999999988 8999998762 22222232110 1110 11221 111 24
Q ss_pred CCcEEEEcCCCCCCCC-C---ChhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKPG-M---TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g-~---~r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
..|++|+.+|....+. . .....+..|... ++.+.+.+.+. ..+.||++|.
T Consensus 99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS 156 (315)
T PRK06196 99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSS 156 (315)
T ss_pred CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECC
Confidence 6899999998643221 1 112234455444 55555555543 2356666654
No 307
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.0044 Score=55.12 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
||+.|+||+|.+|+.++..|+..|. +|+++|+++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999888 899999875
No 308
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.062 Score=48.42 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh------
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA------ 85 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-i~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------ 85 (332)
+.++|.|+||+|.+|+.++..|...|. + |+++|++. ......++... ...+..+. +-++. .++
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998887 6 99999875 22222233222 12222111 11232 122
Q ss_pred -cCCCcEEEEcCCCCCCCC---CChh---hhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 019993 86 -LTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTL----CEGIAKCCPNATVNLISN 138 (332)
Q Consensus 86 -~~~aDiVi~~~g~~~~~g---~~r~---~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN 138 (332)
+...|++|.++|...... .+.. ..+..|+.....+ .+.+.+....+.++++|.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 236899999998653221 1222 2244555444444 444443333355666654
No 309
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.021 Score=54.11 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (332)
.++|.|+||+|.+|..++..|+..|. +|+++++++ ++....++.... ..+..+. +-+| .+++ +
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999998 899999876 233333443322 1222111 1122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN 138 (332)
...|++|.++|..... ..+ ....+..|+... +.+.+.+.+.. .+.+|+++.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS 143 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS 143 (330)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 4679999999864321 111 122344454433 34444444432 456666643
No 310
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.86 E-value=0.013 Score=52.28 Aligned_cols=115 Identities=22% Similarity=0.279 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCH---HhhcC-----
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT----- 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~~----- 87 (332)
.++|.|+||+|.+|..++..|++.|+ ++++. +.+. .......+... ...+..+.. -+|. .+.++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998887 78887 8865 22222233321 122332211 1222 22222
Q ss_pred --CCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 88 --GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 88 --~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
..|+||..+|..... ..+. ...+..|......+.+.+..+. ....+++++.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS 142 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS 142 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 789999998864211 1111 2334556666555555544332 1234555543
No 311
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.85 E-value=0.052 Score=48.54 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 85 (332)
+++|.|+||+|.+|+.++..|++.|. ++++.+. ++ ......++.... .++..+. ..++ ..++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYARDAAAAEETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQSA 77 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 7777653 32 222333343221 1222211 1122 2222
Q ss_pred cCCCcEEEEcCCCC
Q 019993 86 LTGMDLVIIPAGVP 99 (332)
Q Consensus 86 ~~~aDiVi~~~g~~ 99 (332)
+...|++|+++|..
T Consensus 78 ~~~id~li~~ag~~ 91 (248)
T PRK06947 78 FGRLDALVNNAGIV 91 (248)
T ss_pred cCCCCEEEECCccC
Confidence 24689999999853
No 312
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.85 E-value=0.0075 Score=55.24 Aligned_cols=90 Identities=12% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
.|||+|||+ |.+|++++..|...+.. .+++.+|.++.+ + .... ..+..++++++|+||++.
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav- 65 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV- 65 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence 479999999 99999999999887632 358998876421 0 0121 124457788999999984
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~ 141 (332)
+ -..+.++.+.+..+-++..||...+-+.
T Consensus 66 -k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 -K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred -C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 1 2334455555554433344555555554
No 313
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.84 E-value=0.011 Score=61.53 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--CCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVi~~ 95 (332)
.+.|||.|+||+|++|++++..|...++ ++... .. |+.+. ..+...+ .+.|+||++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~------------~~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDR------------SSLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccH------------HHHHHHHHhhCCCEEEEC
Confidence 3458999999999999999999988776 55211 00 01100 0011222 268999999
Q ss_pred CCCCCCCC-----CChhhhHhhhHHHHHHHHHHHHhhCC
Q 019993 96 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCP 129 (332)
Q Consensus 96 ~g~~~~~g-----~~r~~~~~~n~~~~~~i~~~i~~~~p 129 (332)
|+....+. ....+....|+....++++..++...
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~ 474 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL 474 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 97643221 23456678899999999999998754
No 314
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.019 Score=52.46 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=30.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+++.|+||+|.+|..++..|+..|. +|++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998888 899999875
No 315
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.84 E-value=0.092 Score=47.47 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------- 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------- 85 (332)
.+++.|+||+|.+|..++..|+..|. .+++...+. ......++.... ..+..+. +-+|.+ +.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999887 777776644 222333343321 2222111 122322 11
Q ss_pred cCCCcEEEEcCCCCCCC---CCChh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 86 LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~---g~~r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
+...|++|..+|..... ..+.. ..+..|+.. .+.+.+.+.+....+.+|++|.-... .
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~------------~ 150 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ------------I 150 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc------------C
Confidence 23579999999864321 11121 234555433 34455555555445666666542111 1
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
..|..-.++.+......+...++..+. +..|++.++
T Consensus 151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v 186 (261)
T PRK08936 151 PWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVNNI 186 (261)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence 223333455543333345556666553 345554444
No 316
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0053 Score=56.81 Aligned_cols=93 Identities=26% Similarity=0.320 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH-HHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
.++|+|+|. |.||..++..|...|+ .+..++.+...+. ..... .. +..........++.++||+||++.
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~-lg----v~d~~~~~~~~~~~~~aD~Vivav-- 72 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALE-LG----VIDELTVAGLAEAAAEADLVIVAV-- 72 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhh-cC----cccccccchhhhhcccCCEEEEec--
Confidence 468999998 9999999999999999 5555555442211 11111 10 000000111257789999999994
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI 136 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~ 136 (332)
| +..+.++.+++..+- |+++|.=+
T Consensus 73 P--------------i~~~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 73 P--------------IEATEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred c--------------HHHHHHHHHHhcccCCCCCEEEec
Confidence 3 444455555555433 46655433
No 317
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.83 E-value=0.052 Score=48.54 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 85 (332)
.++|.|+||+|++|++++..|++.|. ++++..... .......+.... ..+..+. +.++ ...+
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENG--GEGIGVLADVSTREGCETLAKATIDR 81 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcC--CeeEEEEeccCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999888 776654332 122222222211 1111111 1112 1122
Q ss_pred cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 019993 86 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD 158 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~ 158 (332)
+...|+||+++|...... .+. ...+..|+.....+++.+.++- +.+.+|+++.-.. +.+.+
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~------------~~~~~ 149 (252)
T PRK06077 82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG------------IRPAY 149 (252)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc------------cCCCC
Confidence 346799999998643211 122 2233445554444444444432 2355666554111 11233
Q ss_pred CCceEEeehhhHHHHHHHHHHHhC
Q 019993 159 PKKLLGVTMLDVVRANTFVAEVLG 182 (332)
Q Consensus 159 ~~kviG~~~ld~~r~~~~la~~l~ 182 (332)
+...++.+......+...+++.++
T Consensus 150 ~~~~Y~~sK~~~~~~~~~l~~~~~ 173 (252)
T PRK06077 150 GLSIYGAMKAAVINLTKYLALELA 173 (252)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Confidence 333444443334455666677664
No 318
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.0063 Score=54.96 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+.++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346899999999999999999999887 899999875
No 319
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.83 E-value=0.01 Score=56.10 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+.+||+|||. |.+|.++|..|...|+ +|+..+.+....... ..... +.. .+..++++.||+|+++.
T Consensus 15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G----~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADG----FEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCC----Cee----CCHHHHHhcCCEEEEcC
Confidence 34578999999 9999999999998888 888877654221111 11111 111 25678999999999984
No 320
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.0036 Score=56.60 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.++|.|+||+|.+|+.++..|+..|. +|+++++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 46899999999999999999999888 899999875
No 321
>PRK08264 short chain dehydrogenase; Validated
Probab=96.80 E-value=0.016 Score=51.57 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=76.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE----EeCCCCHHhhc---CCCcEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENAL---TGMDLV 92 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~---~~aDiV 92 (332)
.++|.|+||+|.+|+.++..|+..|. .+|++++++..... + . ...+.. .....++++.+ ...|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D---L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h---c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999998875 26888988652211 1 1 111221 11112223333 358999
Q ss_pred EEcCCCCCCCC----CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 019993 93 IIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (332)
Q Consensus 93 i~~~g~~~~~g----~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv 162 (332)
|.++|.....+ .+. ...+..|......+.+.+.+. ...+.++++|...... +.+....
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------~~~~~~~ 145 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV------------NFPNLGT 145 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc------------CCCCchH
Confidence 99998732211 121 223445666555565554432 2345666666533211 2233334
Q ss_pred EEeehhhHHHHHHHHHHHh
Q 019993 163 LGVTMLDVVRANTFVAEVL 181 (332)
Q Consensus 163 iG~~~ld~~r~~~~la~~l 181 (332)
++.+......+...++..+
T Consensus 146 y~~sK~a~~~~~~~l~~~~ 164 (238)
T PRK08264 146 YSASKAAAWSLTQALRAEL 164 (238)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4554433444555566655
No 322
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.80 E-value=0.012 Score=53.54 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.+++.|+||+|.+|..++..|+..|. +|++.|.++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35799999999999999999999998 899999875
No 323
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.79 E-value=0.023 Score=51.18 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~ 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++.+++. .+....++.... .++..+. .-+|. .+ .+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999988 899999876 223333343322 2222211 11221 12 23
Q ss_pred CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHH----HHHhhCCCcEEEEec
Q 019993 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLIS 137 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~t 137 (332)
...|++|+++|..... ..+. ...+..|+.....+.+ .+.+....+.|++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999999864321 1122 2233455554444444 443333335566554
No 324
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.79 E-value=0.071 Score=47.28 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=45.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC------HHhhcCCCcEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI 93 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~a~~~aDiVi 93 (332)
|+|+|+||+|.+|..++..|+..+....+++.+.+.... .. ..++..+. +-++ +.+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998876434677777654211 11 11222111 1112 223457899999
Q ss_pred EcCCCCC
Q 019993 94 IPAGVPR 100 (332)
Q Consensus 94 ~~~g~~~ 100 (332)
+++|...
T Consensus 73 ~~aG~~~ 79 (235)
T PRK09009 73 NCVGMLH 79 (235)
T ss_pred ECCcccc
Confidence 9998753
No 325
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.79 E-value=0.11 Score=47.10 Aligned_cols=154 Identities=14% Similarity=0.219 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hh
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------EN 84 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~ 84 (332)
+.++|.|+||++.+|..++..|+..|. +|++.+... ......++.... ..++..+. +-+|. .+
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999999988 788875433 223333443211 12222211 11221 11
Q ss_pred hcCCCcEEEEcCCCCCC-------C--CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 019993 85 ALTGMDLVIIPAGVPRK-------P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 148 (332)
Q Consensus 85 a~~~aDiVi~~~g~~~~-------~--g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~ 148 (332)
.+...|++|..+|.... + ..+. ...+..|+. ..+.+.+.+++. +.+.||++|...+..
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~----- 157 (260)
T PRK08416 84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV-GGGSIISLSSTGNLV----- 157 (260)
T ss_pred hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-CCEEEEEEecccccc-----
Confidence 23468999999875311 1 0111 112223333 334455555432 345666665433221
Q ss_pred HHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCce
Q 019993 149 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDV 190 (332)
Q Consensus 149 ~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~ 190 (332)
..|..-.++.+......+.+.++..++ +..|++
T Consensus 158 -------~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v 190 (260)
T PRK08416 158 -------YIENYAGHGTSKAAVETMVKYAATELG--EKNIRV 190 (260)
T ss_pred -------CCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEE
Confidence 112222345555555566777777764 344543
No 326
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.78 E-value=0.0074 Score=57.37 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
..++|+|||. |.+|+.+|..|...|. +|..+|........ ... . .. . .++++.++.||+|++....
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~--~~~-~----~~-~---~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAE--KEL-G----AE-Y---RPLEELLRESDFVSLHVPL 214 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhH--HHc-C----CE-e---cCHHHHHhhCCEEEEeCCC
Confidence 3469999999 9999999999987777 89999986522111 111 1 11 1 2578889999999998521
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 143 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~ 143 (332)
. + .+...+.. +.+...-|++++|+++ ..+|.-
T Consensus 215 t--~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~~ 248 (333)
T PRK13243 215 T--K---------ETYHMINE--ERLKLMKPTAILVNTARGKVVDTK 248 (333)
T ss_pred C--h---------HHhhccCH--HHHhcCCCCeEEEECcCchhcCHH
Confidence 1 1 11111211 2333334788999985 555544
No 327
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.78 E-value=0.011 Score=55.68 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..++|+|+|+ |.+|..++..|...+. .+|+++|++..+ ..+..+. ..... ..++++++.++|+||.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT 246 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence 4579999999 9999999988887553 389999987522 2333221 12221 135678889999999997
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHH-Hhh-CCCcEEEEecCCCCchH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNSTV 144 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i-~~~-~p~a~viv~tNP~~~~t 144 (332)
+.+.. .++.+.+ ... .+..+++-.++|-|+-.
T Consensus 247 ~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~~ 280 (311)
T cd05213 247 GAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIEP 280 (311)
T ss_pred CCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCch
Confidence 65521 1222222 111 23557788899999763
No 328
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.78 E-value=0.012 Score=56.73 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
++||+|||.+|.+|..++..|.+. ...+|+.+|.+ +. ..++.++++++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence 469999999899999999999875 23389999973 11 0234567899999999985
No 329
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.78 E-value=0.0052 Score=53.57 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEE--eCCCCHHhhcCCCcEEEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVII 94 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~--~~~~d~~~a~~~aDiVi~ 94 (332)
+.+++.|+||+|.+|..++..|...+. +|.+++++.. .....++.+.. ...+... ....++.++++++|+||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 446999999889999999999988776 8999988752 22233333211 1222221 111234578899999888
Q ss_pred cCC
Q 019993 95 PAG 97 (332)
Q Consensus 95 ~~g 97 (332)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 753
No 330
>PRK09186 flagellin modification protein A; Provisional
Probab=96.77 E-value=0.02 Score=51.47 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.++|.|+||+|.+|..++..|+..|+ +|++.+++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 46899999999999999999999888 899998865
No 331
>PRK07023 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.0078 Score=53.86 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+|+|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 36899999999999999999998887 899999865
No 332
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=96.77 E-value=0.0038 Score=57.76 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=60.6
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCCCCC
Q 019993 24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK 101 (332)
Q Consensus 24 ~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~~~~ 101 (332)
.|+||+|++|++++..|+..++ +++++.... + .|+.+ ..++.+.++ ++|+||++|+....
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~-~---~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~ 62 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK-E---LDLTR------------QADVEAFFAKEKPTYVILAAAKVGG 62 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC--cEEEeeccc-c---CCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence 3899999999999999988876 555443221 0 11111 123444444 57999999876421
Q ss_pred ---CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 019993 102 ---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134 (332)
Q Consensus 102 ---~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi 134 (332)
......++...|.....++++.+++....-+|.
T Consensus 63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 123345677889999999999999875443333
No 333
>PRK06398 aldose dehydrogenase; Validated
Probab=96.75 E-value=0.02 Score=51.90 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhh-------cCCCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi 91 (332)
.+++.|+||+|.+|..++..|+..|. +|+++|+++.... .. ..+. ......+.+++ +...|+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~-----~~---~~~~~D~~~~~~i~~~~~~~~~~~~~id~ 75 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYN-----DV---DYFKVDVSNKEQVIKGIDYVISKYGRIDI 75 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccC-----ce---EEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35899999999999999999999988 8999998652110 00 0011 01001112222 346899
Q ss_pred EEEcCCCCCCC---CCCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 019993 92 VIIPAGVPRKP---GMTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (332)
Q Consensus 92 Vi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k 161 (332)
+|+++|.+... ..+. ...+..|+.....+ .+.+.+ ...+.||++|.-... .+.+..-
T Consensus 76 li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~------------~~~~~~~ 142 (258)
T PRK06398 76 LVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLK-QDKGVIINIASVQSF------------AVTRNAA 142 (258)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEeCcchhc------------cCCCCCc
Confidence 99999864321 1122 22345565544444 444433 234566666542211 1123333
Q ss_pred eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.++.+......+.+.++..++ +. |++..+
T Consensus 143 ~Y~~sKaal~~~~~~la~e~~--~~-i~vn~i 171 (258)
T PRK06398 143 AYVTSKHAVLGLTRSIAVDYA--PT-IRCVAV 171 (258)
T ss_pred hhhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence 455544334456666777665 33 554444
No 334
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=96.75 E-value=0.073 Score=48.42 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=28.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~ 55 (332)
.+.|+||+|.+|..++..|+..|. +|++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence 689999999999999999999988 88887543
No 335
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.75 E-value=0.02 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=29.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899999 9999999999999987 4899999874
No 336
>PLN00016 RNA-binding protein; Provisional
Probab=96.75 E-value=0.011 Score=57.01 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCCeEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 19 AGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 19 ~~~kI~Ii----Ga~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+++||.|+ ||+|++|+.++..|+..|+ +|++++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 34689999 9999999999999999998 999999875
No 337
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.068 Score=48.21 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC------cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh----
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMDTGAVVRGFL-GQPQL---ENA---- 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~------~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a---- 85 (332)
.+++.|+||+|.+|..++..|+..|. ++++++.+. ......++.... ..+..+. .-++. ++.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHH
Confidence 35899999999999999999998887 766665432 112222232221 1222211 11222 222
Q ss_pred ---cCCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchHHHHHHHHHHh
Q 019993 86 ---LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKA 154 (332)
Q Consensus 86 ---~~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t~~~~~~~~~~ 154 (332)
+...|++|+++|..... ..+ ....+.-|+.....+.+.+.+.. +.+.++++ +......
T Consensus 84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~----------- 152 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF----------- 152 (257)
T ss_pred HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc-----------
Confidence 23679999999864321 112 22334556665555555554433 33434433 3322211
Q ss_pred CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.|..-.++.+......+.+.+++.++ +..|++..+
T Consensus 153 --~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v 187 (257)
T PRK12744 153 --TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV 187 (257)
T ss_pred --CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence 12223456655555667778888776 445544444
No 338
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.74 E-value=0.011 Score=53.66 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999988 899999875
No 339
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.026 Score=51.18 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---H----Hhhc-
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---L----ENAL- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~----~~a~- 86 (332)
+++|.|+||+|.+|..++..|++.+ . .|+++++++. .....++.... ..++..+. +-+| . ++..
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh
Confidence 4589999999999999999998874 6 8999998762 22334444321 11222211 1112 1 1111
Q ss_pred -CCCcEEEEcCCCCCCCCCC---hh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 87 -TGMDLVIIPAGVPRKPGMT---RD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~~g~~---r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
.+.|++|..+|........ .. +.+..|+.. .+.+.+.+.+... +.|+++|.
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS 146 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS 146 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence 3799999988775322111 11 234555543 3456666665543 45555544
No 340
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.73 E-value=0.007 Score=56.45 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=46.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+|||. |.||+.++..|...|+ ++.++|+++. ..++.... . .. ..+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g--~--~~---~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG--A--VS---VETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC--C--ee---cCCHHHHHhcCCEEEEeC
Confidence 58999999 9999999999999998 8899998652 12232221 1 11 124467789999999984
No 341
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.074 Score=47.49 Aligned_cols=157 Identities=16% Similarity=0.122 Sum_probs=79.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCe-EEE-EeCCCCHHhhc-------CC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAV-VRG-FLGQPQLENAL-------TG 88 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~-v~~-~~~~~d~~~a~-------~~ 88 (332)
..+.|+||+|.+|+.++..|+..|. .+++.+.+. ......++........ +.. ......+++++ ..
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 3699999999999999999999887 788877543 1222223332211111 111 11111222222 36
Q ss_pred CcEEEEcCCCCCCC----CCCh---hhhHhhhHHHHHHHHHHHHhh----C--CCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 89 MDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC----C--PNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 89 aDiVi~~~g~~~~~----g~~r---~~~~~~n~~~~~~i~~~i~~~----~--p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
.|+||.++|..... ..+. ...+..|+.....+.+...++ . .++.++++|......
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 148 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL------------ 148 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC------------
Confidence 79999999864321 1121 233556666544444433322 1 135566666543221
Q ss_pred CCCCC-ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPK-KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~-kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|.. -.++.+......+...+++.+. +..+++.++
T Consensus 149 ~~~~~~~~Y~~sKaa~~~~~~~la~~~~--~~~i~v~~i 185 (248)
T PRK06123 149 GSPGEYIDYAASKGAIDTMTIGLAKEVA--AEGIRVNAV 185 (248)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence 11111 1244443333456666777663 344544443
No 342
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.72 E-value=0.055 Score=48.37 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
+++.|+||+|.+|..++..|+..|. ++++. +++. .+....++.... ..+..+. .-+| ...++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999887 76664 4444 222233343222 2222211 1122 22222
Q ss_pred CCCcEEEEcCCCCCC-C--CCChh---hhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~-~--g~~r~---~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN 138 (332)
...|+||..+|.... + ..+.. ..+..|......+++.+.++. +.+.|+++|.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS 141 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS 141 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 358999999875321 1 11111 123455555555555554432 3346666654
No 343
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.71 E-value=0.0063 Score=56.61 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
...+|+|+|+ |.+|..++..|...|. +|+++|+++... ........ ..+. ..++.+.++++|+||.+...
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC-eeec----HHHHHHHhccCCEEEECCCh
Confidence 3468999999 9999999999988886 899999875211 11111111 1111 23567888999999998521
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCch
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNST 143 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~ 143 (332)
. ++ + .+ .+....|++++|.+ ++|-.+-
T Consensus 220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCCC
Confidence 1 01 1 11 23333467888877 5887664
No 344
>PLN02712 arogenate dehydrogenase
Probab=96.70 E-value=0.012 Score=61.09 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-CCCcEEEEcC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA 96 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVi~~~ 96 (332)
.+++||+|||. |.+|..++..|...|+ +|+.+|.+.....+.++ . +... ++..+.+ ++||+||++.
T Consensus 50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILLCT 116 (667)
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEEcC
Confidence 34589999998 9999999999998886 89999987422222211 1 1222 2455544 5799999984
No 345
>PRK08324 short chain dehydrogenase; Validated
Probab=96.70 E-value=0.038 Score=57.67 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (332)
.++|.|+||+|.+|+.++..|+..|. +|+++|++.. ......+... ..+..+. .-+| ..+++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999887 8999998862 2222233321 1122111 1122 22222
Q ss_pred CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN 138 (332)
.+.|+||.++|...... .+. ...+..|......+ .+.+++....+.|++++.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 36899999998643211 111 12234454444444 444444333356666653
No 346
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.017 Score=51.52 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH---hhc-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NAL------- 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a~------- 86 (332)
++++.|+||+|.+|..++..|+++|. +|+++|+++. .....++.... ..+..+. .-+|.+ .++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999988 8999998762 22222232211 1222111 112322 222
Q ss_pred CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN 138 (332)
...|++|.++|..... ..+ ....+..|+.... .+.+.+.+. ..+.++++|.
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS 142 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSS 142 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 3589999999864321 111 1223445555433 344444433 2355666654
No 347
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.70 E-value=0.015 Score=55.32 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------------------HHH--HHHHhcCCCCCeEEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------------------PGV--TADISHMDTGAVVRGF 76 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------------------~~~--~~dl~~~~~~~~v~~~ 76 (332)
..||+|||+ |.+|+.++..|+..|.. +|.|+|.+.. +.. +..+........+..+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 358999999 99999999999999874 8999998740 011 1223333223344433
Q ss_pred eC---CCCHHhhcCCCcEEEEcC
Q 019993 77 LG---QPQLENALTGMDLVIIPA 96 (332)
Q Consensus 77 ~~---~~d~~~a~~~aDiVi~~~ 96 (332)
.. ..+.++.++++|+||.+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEcC
Confidence 21 123567789999999984
No 348
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.70 E-value=0.0062 Score=54.37 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=59.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
|+|+||+|.+|+.++..|+..++ +|..+=++........+.+.. ..+.. +.....+.++|+|+|.|+++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 78999999999999999999776 677776655333344455443 22221 1112346678999999999865332
Q ss_pred CCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 019993 101 KPGMTRDDLFNINAGIVRTLCEGIAKCC 128 (332)
Q Consensus 101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~ 128 (332)
....+....+++...+.+
T Consensus 77 ----------~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 77 ----------PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp ----------CCHHHHHHHHHHHHHHHT
T ss_pred ----------hhhhhhhhhHHHhhhccc
Confidence 112445556677777665
No 349
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.021 Score=51.67 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------ 86 (332)
.+++.|+||+|++|.+++..|+..|. ++++.+... .......+.... ..+..+. .-+| ..+++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998887 787776543 122222332221 2232221 1123 22222
Q ss_pred -CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhCC---CcEEEEec
Q 019993 87 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP---NATVNLIS 137 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~p---~a~viv~t 137 (332)
...|+||.++|..... ..+ ....+..|+.....+.+.+.++.+ .+.+++.+
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~ 145 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI 145 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence 3469999999864321 122 233456677666666666555432 34555543
No 350
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.67 E-value=0.02 Score=53.92 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
..++|+|+|. |.+|+.+|..|..-|. +|+.+|...... +.+..+....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----------~~~~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----------PGVQSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----------CCceeecccccHHHHHhcCCEEEECCCC
Confidence 3469999999 9999999999987777 999999754110 0011111123678999999999998421
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCc
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS 142 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~ 142 (332)
. ..+..++. .+.+....|++++||++ .-+|-
T Consensus 201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred C-----------HHHHHHhH--HHHHhcCCCCcEEEECCCccccCH
Confidence 1 12222222 23444445789999986 44443
No 351
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.67 E-value=0.057 Score=48.91 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~ 86 (332)
.+.+.|+||+|.+|..++..|+..|. +|++.+++. ......++.......++..+. .-+|.+ +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999988 899999876 233333343321112332211 122321 123
Q ss_pred CCCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tN 138 (332)
...|++|.++|...... .+. ...+..| ....+.+.+.+++. ..+.|+++|.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 146 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNS 146 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEecc
Confidence 46799999998643211 111 1122233 33455555656543 3456666654
No 352
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.66 E-value=0.011 Score=53.95 Aligned_cols=98 Identities=23% Similarity=0.260 Sum_probs=62.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-CCcEEEEcCCCCCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK 101 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVi~~~g~~~~ 101 (332)
|+|+|++|+||+++...|...|+ +|..+-++...... ..+. .+... ..+.+... ++|.||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHP----NVTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence 68999999999999999999998 88888876522111 1111 11111 11233333 79999999997632
Q ss_pred CC----CChhhhHhhhHHHHHHHHHHHHhhCCCc
Q 019993 102 PG----MTRDDLFNINAGIVRTLCEGIAKCCPNA 131 (332)
Q Consensus 102 ~g----~~r~~~~~~n~~~~~~i~~~i~~~~p~a 131 (332)
.. +....+..--+...+.+++.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 21 1122333445778888899998766444
No 353
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.66 E-value=0.012 Score=53.70 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=45.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||+|||+ |.+|+.++..|...++ ...+.++|.+... ...+.+.. ...... .+..+++++||+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence 58999999 9999999999988774 3456788876422 22232211 112221 34567789999999985
No 354
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.011 Score=55.13 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
..++|+|||.+|.||..++..|+..|. +|.+++... .++++..+.||+||.+.|.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 346899999966999999999999888 888887542 2467888999999999876
Q ss_pred C
Q 019993 99 P 99 (332)
Q Consensus 99 ~ 99 (332)
+
T Consensus 213 ~ 213 (301)
T PRK14194 213 P 213 (301)
T ss_pred h
Confidence 5
No 355
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.65 E-value=0.0078 Score=54.63 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEccCC--c--HH----HHHHHhcCCCCCeEEEEeCCCCH
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN--T--PG----VTADISHMDTGAVVRGFLGQPQL 82 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~--~--~~----~~~dl~~~~~~~~v~~~~~~~d~ 82 (332)
..||+|.|| |..|..++..|...+. ..+++++|..- . +. ....+.+. .+-.. ...++
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~---~~~~~--~~~~L 98 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARF---ANPER--ESGDL 98 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHH---cCccc--ccCCH
Confidence 469999999 9999999987765432 24899999875 1 11 01111101 01011 12478
Q ss_pred HhhcC--CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC--chHHHHHHHHHHhCCCC
Q 019993 83 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD 158 (332)
Q Consensus 83 ~~a~~--~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~--~~t~~~~~~~~~~~~~~ 158 (332)
.++++ ++|++|=+.+.+ | -+.+++.+.|.+++++.+|+-.|||.. -.++ +-.++.+ +
T Consensus 99 ~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~ 159 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--E 159 (254)
T ss_pred HHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--C
Confidence 99999 999998876544 2 134588889999999999888899996 4443 2223332 2
Q ss_pred CCceEEe
Q 019993 159 PKKLLGV 165 (332)
Q Consensus 159 ~~kviG~ 165 (332)
.+.+++.
T Consensus 160 G~ai~At 166 (254)
T cd00762 160 GRAIFAS 166 (254)
T ss_pred CCEEEEE
Confidence 2467777
No 356
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.63 E-value=0.025 Score=52.86 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh------c
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------L 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------~ 86 (332)
.+++.|+||+|.+|..++..|+..|. +|++.|... .+..+.++.... .++..+. .-+| ..+. +
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999988 899999754 223333343321 2232221 1122 1121 2
Q ss_pred CCCcEEEEcCCCCC
Q 019993 87 TGMDLVIIPAGVPR 100 (332)
Q Consensus 87 ~~aDiVi~~~g~~~ 100 (332)
...|++|+++|...
T Consensus 88 g~iD~li~nAG~~~ 101 (306)
T PRK07792 88 GGLDIVVNNAGITR 101 (306)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999998754
No 357
>PRK07574 formate dehydrogenase; Provisional
Probab=96.63 E-value=0.016 Score=56.15 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
..++|+|||. |.||+.+|..|..-|. +|+.+|+........ ... .+.. ..++++.++.||+|++....
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~--~~~----g~~~---~~~l~ell~~aDvV~l~lPl 258 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE--QEL----GLTY---HVSFDSLVSVCDVVTIHCPL 258 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH--hhc----Ccee---cCCHHHHhhcCCEEEEcCCC
Confidence 4478999999 9999999999987676 999999865211111 011 1222 13578999999999998421
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 143 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~ 143 (332)
. .++-.++. .+.+....|++++||++ ..+|.-
T Consensus 259 t-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~ 292 (385)
T PRK07574 259 H-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRD 292 (385)
T ss_pred C-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHH
Confidence 1 11122221 23333345788998885 555544
No 358
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.62 E-value=0.017 Score=53.30 Aligned_cols=71 Identities=24% Similarity=0.221 Sum_probs=46.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC--CCCcEEE-EEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI 93 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi 93 (332)
+++++||+|||. |.+|..++..|... +. +|+ ++|.+..+ +.++....... .. .+++++.+.++|+|+
T Consensus 3 ~m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~g~~--~~---~~~~eell~~~D~Vv 72 (271)
T PRK13302 3 SRPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGLRRP--PP---VVPLDQLATHADIVV 72 (271)
T ss_pred CCCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhcCCC--cc---cCCHHHHhcCCCEEE
Confidence 466789999999 99999999888764 33 654 78886522 22222111001 11 235677789999999
Q ss_pred EcCC
Q 019993 94 IPAG 97 (332)
Q Consensus 94 ~~~g 97 (332)
+++.
T Consensus 73 i~tp 76 (271)
T PRK13302 73 EAAP 76 (271)
T ss_pred ECCC
Confidence 9963
No 359
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.62 E-value=0.024 Score=52.40 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEE----EeCCCCHH-------hhc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG----FLGQPQLE-------NAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~----~~~~~d~~-------~a~ 86 (332)
.+.|+|+|||..+|.++|..|+..|. .++++-... ++-...++.......++.. .+...+.+ .-+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 34699999999999999999999998 788887765 3333355544432111221 11112222 346
Q ss_pred CCCcEEEEcCCCCCCCCC-C---h---hhhH----hhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 019993 87 TGMDLVIIPAGVPRKPGM-T---R---DDLF----NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 144 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g~-~---r---~~~~----~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t 144 (332)
.+.|+.|..||+.+ .+. + . ...+ ...+-..+...+.|++.. ++.|+++++..+.+.
T Consensus 90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP 156 (282)
T ss_pred CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence 89999999999887 331 1 1 1122 245678888899998887 788888877776553
No 360
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.61 E-value=0.04 Score=49.44 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCC----cHH-----HHHHHhcCCCCCeEEEEeCCCCHHhhcC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN----TPG-----VTADISHMDTGAVVRGFLGQPQLENALT 87 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~----~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~ 87 (332)
.+.+||+|+|| |.+|..++..|...|. .++|+++|++. .+. ....+.+...... . ..++.++++
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~ 96 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALK 96 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHh
Confidence 34579999999 9999999999988775 23799999983 111 1122322110011 1 125678899
Q ss_pred CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 019993 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~ 142 (332)
++|++|.+.+ +|+- + .+..+.| +++.+++..+||...
T Consensus 97 ~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e 133 (226)
T cd05311 97 GADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPE 133 (226)
T ss_pred cCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence 9999999854 2331 1 1333333 467777777899753
No 361
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.61 E-value=0.0095 Score=59.21 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=58.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC-CCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
+|+|||. |.||.++|..|+..|+ +|+++|+++.+ +.++... .....+.......++.+.++.+|+|+++...
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~-- 73 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA-- 73 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence 4899999 9999999999999998 99999987622 2223322 1011122221112233345679999888421
Q ss_pred CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 019993 101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (332)
Q Consensus 101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN 138 (332)
-+.+.++.+.+..+. ++.+||..+|
T Consensus 74 -------------~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 74 -------------GAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred -------------cHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 122333444555443 5667777776
No 362
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.60 E-value=0.046 Score=49.93 Aligned_cols=157 Identities=14% Similarity=0.194 Sum_probs=81.3
Q ss_pred CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HH-------hhc
Q 019993 20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LE-------NAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~-------~a~ 86 (332)
.+.+.|+||++ .+|..++..|++.|. .|++.|.+. ....+.++........... .+-+| .+ +.+
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLP-CDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccCCceEee-cCCCCHHHHHHHHHHHHhhc
Confidence 45799999953 699999999999998 899998764 2233344433211111110 01112 11 123
Q ss_pred CCCcEEEEcCCCCCCC--------CCChh---hhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCCCCchHHHHHHHHHHh
Q 019993 87 TGMDLVIIPAGVPRKP--------GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKA 154 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~--------g~~r~---~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~~~~ 154 (332)
...|++|..+|..... ..+.. ..+..|+.....+.+.+... .+++.|+++|.-....
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------- 151 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 151 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-----------
Confidence 3579999999864211 11222 22344554333333333222 2346677766432111
Q ss_pred CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+......+.+.+|..++ +..|++..+
T Consensus 152 -~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i 187 (262)
T PRK07984 152 -AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI 187 (262)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeee
Confidence 122222345544444566777777764 455654444
No 363
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.11 Score=46.23 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+.++|.|+||+|.+|..++..|+..|. +|+++++++
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 346899999999999999999999888 899999877
No 364
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.59 E-value=0.025 Score=53.86 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..||+|+|+ |.+|+.++..|+..|.. +|.++|.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVG-KVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCc
Confidence 358999999 99999999999998874 999999874
No 365
>PRK05599 hypothetical protein; Provisional
Probab=96.59 E-value=0.2 Score=45.06 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=81.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---H-------HhhcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENALT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~ 87 (332)
|.+.|+||++.+|..++..|++ |. .|++.++++ ++..+.++..... ..+..+. +-+| . .+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 3589999999999999999884 65 899999876 3344445543221 1122111 1112 1 12235
Q ss_pred CCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 019993 88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 157 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~ 157 (332)
.-|++|+.+|...... .+. .+....| +...+.+.+.+.+...++.|+++|.-.... +.
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~ 144 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------AR 144 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------CC
Confidence 6899999988643211 111 1122223 233345556665544456777776544322 11
Q ss_pred CCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 019993 158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 191 (332)
Q Consensus 158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~ 191 (332)
|..-.++.+.-....+...++..++ +..|++.
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~ 176 (246)
T PRK05599 145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI 176 (246)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence 2222345544334456667777664 3445433
No 366
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.58 E-value=0.041 Score=48.95 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=64.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeC-CCC---HHhh-------c
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~ 86 (332)
++|.|+|++|.+|+.++..|...|. .|++.|++.. ......+... ..++..+.. -+| ..++ +
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGNDCAKDWFEEYGFT--EDQVRLKELDVTDTEECAEALAEIEEEE 78 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhhcc--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4799999999999999999998887 8999998752 1111111111 122322211 122 1222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCC
Q 019993 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP 139 (332)
...|++|+.+|..... ..+. ...+..|+.....+ .+.+.+. +.+.+|++|..
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~ 140 (245)
T PRK12824 79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV 140 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence 3589999998864211 1111 22344565554444 4444433 34567777643
No 367
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=96.58 E-value=0.032 Score=50.03 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.+++.|+||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 35899999999999999999999888 999999864
No 368
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.57 E-value=0.011 Score=54.60 Aligned_cols=148 Identities=23% Similarity=0.242 Sum_probs=90.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~ 98 (332)
|||.|+|++|++|+.+...|. .+. +++-.|..+ +|+.+.. ...+.++ .-|+||++|.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 579999999999999998887 445 888887654 3333221 1234444 45999999987
Q ss_pred CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCC--CchHHHHHHHHHHhCC-CCCCceEEeehhhHHH
Q 019993 99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NSTVPIAAEVFKKAGT-YDPKKLLGVTMLDVVR 172 (332)
Q Consensus 99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~--~~~t~~~~~~~~~~~~-~~~~kviG~~~ld~~r 172 (332)
..-. ..++..-+.-|......+++...++ ++++|-+| --| +.-.. -++..- -.|..++|-+.+-.+.
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhiSTDyVFDG~~~~-----~Y~E~D~~~P~nvYG~sKl~GE~ 133 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHISTDYVFDGEKGG-----PYKETDTPNPLNVYGRSKLAGEE 133 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHh--CCeEEEeecceEecCCCCC-----CCCCCCCCCChhhhhHHHHHHHH
Confidence 5432 2345555678999999999999877 45555443 333 11100 011111 2345678877655443
Q ss_pred HHHHHHHHhCCCCCCC---ceeEEEecCCCcee
Q 019993 173 ANTFVAEVLGLDPRDV---DVPVVGGHAGVTIL 202 (332)
Q Consensus 173 ~~~~la~~l~v~~~~v---~~~v~G~hg~~~~v 202 (332)
+- +..+ |..+ ..|++|++|. +.+
T Consensus 134 ~v----~~~~--~~~~I~Rtswv~g~~g~-nFv 159 (281)
T COG1091 134 AV----RAAG--PRHLILRTSWVYGEYGN-NFV 159 (281)
T ss_pred HH----HHhC--CCEEEEEeeeeecCCCC-CHH
Confidence 22 2222 3333 5889999886 543
No 369
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.56 E-value=0.034 Score=50.12 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhh-------cCCCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi 91 (332)
.+++.|+||+|.+|..++..|++.|. +|++.+.+.. ....++.+... ..+. ......+..++ +...|+
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 36899999999999999999999987 8888765431 12222322211 1111 11111112222 236799
Q ss_pred EEEcCCCCCCC---CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 92 VIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 92 Vi~~~g~~~~~---g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
+|.++|..... ..+. ...+..|+.. .+.+.+.+++. ..+.||++|.
T Consensus 83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS 138 (255)
T PRK06463 83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS 138 (255)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 99999874321 1222 2234455554 56666666533 3455666654
No 370
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.56 E-value=0.013 Score=53.99 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=57.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC-CCeEEEEeCCCCHHhhc------CC-CcEEE
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENAL------TG-MDLVI 93 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~------~~-aDiVi 93 (332)
||.|+||+|++|+.++..|++.|+ +|..+.++..... .... ..... +.....+.+++ ++ +|.|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~-----~~~~~~~~~d-~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSA-----GPNEKHVKFD-WLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCcccc-----CCCCcccccc-CCCHHHHHHHHhcccCcCCceeEEE
Confidence 589999999999999999998887 8899988752110 0000 01111 11123455666 67 99999
Q ss_pred EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
+..+... + .....+.+++.+++.+-+ .+|..|
T Consensus 73 ~~~~~~~--~---------~~~~~~~~i~aa~~~gv~-~~V~~S 104 (285)
T TIGR03649 73 LVAPPIP--D---------LAPPMIKFIDFARSKGVR-RFVLLS 104 (285)
T ss_pred EeCCCCC--C---------hhHHHHHHHHHHHHcCCC-EEEEee
Confidence 8754211 1 123345666666665533 344443
No 371
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.55 E-value=0.017 Score=53.94 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.....||+|+|+ |.+|..++..|...|. +|..+|++. ....+.++ . ..... ..++.+.++++|+||.+
T Consensus 149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~~---~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPFH---LSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceeec---HHHHHHHhCCCCEEEEC
Confidence 345679999999 9999999999988786 999999875 22222221 1 11111 23567888999999998
Q ss_pred C
Q 019993 96 A 96 (332)
Q Consensus 96 ~ 96 (332)
.
T Consensus 218 ~ 218 (296)
T PRK08306 218 I 218 (296)
T ss_pred C
Confidence 5
No 372
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.55 E-value=0.019 Score=60.37 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=59.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
.||+|||+ |.+|..++..+...|+..+|+.+|.++.. ..+.+ ... ... ..+++.++++++|+||++..
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~---~g~--~~~---~~~~~~~~~~~aDvVilavp-- 72 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS---LGV--IDR---GEEDLAEAVSGADVIVLAVP-- 72 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH---CCC--CCc---ccCCHHHHhcCCCEEEECCC--
Confidence 58999999 99999999999988754479999998622 12221 111 001 13456788999999999853
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 137 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t 137 (332)
...+.++.+.+.++. ++.+|+.++
T Consensus 73 --------------~~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 73 --------------VLAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred --------------HHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 123455556666554 455554443
No 373
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.095 Score=47.11 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=65.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------ALT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~~ 87 (332)
+++.|+||+|.+|..++..|+..|. .|++.|++. ......++.... ..+..+. +-+|. ++ .+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999888 899999876 223333343221 2222221 11221 11 124
Q ss_pred CCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN 138 (332)
..|++|.++|.... + ..+. ...+..|+.....+.+.+ .+..+.+.++++|.
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 138 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA 138 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence 67999999875321 1 2222 233455655444444444 33333466777663
No 374
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.50 E-value=0.063 Score=47.70 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
++++.|+||+|.+|..++..|+..|. +|++.|.++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 35799999999999999999999888 899999876
No 375
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.024 Score=52.06 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++||++||+ |+||..++..|...+ + ..+|+..|.++.+.. ++.... .... +++..++...+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence 469999999 999999999998887 2 368888888762221 232221 1111 235568889999999995
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
|| ..+.+++..++...++..||-+.-.+
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv 98 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGV 98 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence 22 34556667776644566665554444
No 376
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.46 E-value=0.19 Score=44.45 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC----HHhhcCCCcEEEE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVII 94 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~a~~~aDiVi~ 94 (332)
.+++.|+||+|.+|..++..|++.|. +|+++|++.... . ...+..+.. -++ ..+.+...|+||.
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~-----~~~~~~~~~D~~~~~~~~~~~~~~id~lv~ 73 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----L-----SGNFHFLQLDLSDDLEPLFDWVPSVDILCN 73 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----c-----CCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence 35899999999999999999999888 899999865210 0 011222111 111 1223567899999
Q ss_pred cCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 95 PAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 95 ~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
.+|.... + ..+. ...+..|+.....+.+.+... .+.+.+++++.
T Consensus 74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 127 (235)
T PRK06550 74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS 127 (235)
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 9986421 1 1122 223455665555555544432 23355665553
No 377
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.11 Score=48.24 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE-eCCCCHH---h-------hc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE---N-------AL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~---~-------a~ 86 (332)
.++|.|+||+|.+|..++..|+..|. +|++.++++ +.....++... ..+..+ .+-+|.+ + .+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 899999876 22233333221 122211 1122321 1 23
Q ss_pred CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN 138 (332)
...|+||.++|..... ..+. ...+..|+.....+++.+..+. ..+.||++|.
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5679999999864311 1121 2334556555555555443321 2455666653
No 378
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.45 E-value=0.024 Score=50.60 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..++.|+|++|.+|..++..|+..|. +|+++|.++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999998887 899999876
No 379
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.026 Score=49.96 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.++|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999999887 899999875
No 380
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.44 E-value=0.038 Score=49.95 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.+.+.|+||+ +.+|..++..|+..|. +|++.++++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 3579999997 5899999999999998 899998864
No 381
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=96.44 E-value=0.035 Score=49.36 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=63.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG 88 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~ 88 (332)
|.|+||+|.+|..++..|++.|. ++++++... ......++.+.. .++..+. +-+|. +++ +..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999988 888887643 222233343322 2232221 11221 122 234
Q ss_pred CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCC
Q 019993 89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV 140 (332)
Q Consensus 89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~ 140 (332)
.|.+|..+|...... .+ ....+..|+.....+.+.+ .+..+.+.+|++|...
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~ 138 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS 138 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence 689999988643221 12 2334556665555554432 2223456666666544
No 382
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.43 E-value=0.024 Score=53.39 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+||+|||+ |++|.+++..|...|+ +++..+....... ..+.... +.. . +..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence 468999999 9999999999998887 6666554331111 1121111 121 2 3568889999999995
No 383
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.43 E-value=0.0096 Score=48.20 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=43.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHH-HHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
|||+|+|++|.||+.++..+...+-..=+..+|.+. ..|. ..++.... ...+.. +.|+++.++.+|+||-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEc
Confidence 689999999999999999998854322355667665 1111 11222221 122232 35788999999998876
No 384
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.42 E-value=0.018 Score=54.78 Aligned_cols=64 Identities=28% Similarity=0.395 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..++|+|||. |.+|+.+|..|+. ++.-+|+.+|....... . . .+.. ..++++++++||+|+++.
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~-~---~-----~~~~---~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA-A---T-----YVDY---KDTIEEAVEGADIVTLHM 208 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH-H---h-----hccc---cCCHHHHHHhCCEEEEeC
Confidence 3579999999 9999999998853 33348999997652211 1 0 0111 236789999999999985
No 385
>PLN03139 formate dehydrogenase; Provisional
Probab=96.42 E-value=0.023 Score=55.07 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
..++|+|||. |.||+.+|..|..-|. +|+.+|......... .+. .+.. ..++++.++.||+|++..
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l-- 263 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT-- 263 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC--
Confidence 3469999999 9999999999986666 899999864211111 111 1121 236789999999999984
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 143 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~ 143 (332)
|.. ..+...+. .+.+....|++++||.+ ..+|.-
T Consensus 264 Plt---------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~ 299 (386)
T PLN03139 264 PLT---------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMDTQ 299 (386)
T ss_pred CCC---------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhhHH
Confidence 211 11222221 23444445788998885 445443
No 386
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.036 Score=50.01 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------ 86 (332)
.+.+.|+||+|.+|+.++..|++.|. +|++.|.+.. .....++.+.. ..+..+. .-+| ..+++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35799999999999999999999988 9999998652 22333444322 1222111 1122 22222
Q ss_pred -CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 019993 87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 -~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN 138 (332)
..-|++|.++|...... .+. ...+..|+.... .+.+.+.+. ..+.+|++|.
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS 145 (254)
T PRK06114 84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLEN-GGGSIVNIAS 145 (254)
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCcEEEEECc
Confidence 34599999998643211 111 223445555443 444444332 3455666654
No 387
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.41 E-value=0.22 Score=45.64 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCH----------Hhhc
Q 019993 20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQL----------ENAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~ 86 (332)
.+.+.|+||++ .+|..+|..|+..|. .|++.|+++. .....++.+... ..+-...+-+|. .+.+
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 35699999964 799999999999998 8999987652 112223322111 111110011221 1224
Q ss_pred CCCcEEEEcCCCCCC-----C--CCChh---hhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 019993 87 TGMDLVIIPAGVPRK-----P--GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK 152 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~-----~--g~~r~---~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~ 152 (332)
...|++|..+|.... + ..+.. ..+..|+... +.+.+.+. ..+.||++|......
T Consensus 84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~---~~G~Iv~isS~~~~~--------- 151 (271)
T PRK06505 84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMP---DGGSMLTLTYGGSTR--------- 151 (271)
T ss_pred CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhc---cCceEEEEcCCCccc---------
Confidence 568999999986432 1 12222 2234454443 34444443 246666665433211
Q ss_pred HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 019993 153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 192 (332)
Q Consensus 153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v 192 (332)
+.|..-.++.+.-....+.+.+|..++ +..|++..
T Consensus 152 ---~~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrVn~ 186 (271)
T PRK06505 152 ---VMPNYNVMGVAKAALEASVRYLAADYG--PQGIRVNA 186 (271)
T ss_pred ---cCCccchhhhhHHHHHHHHHHHHHHHh--hcCeEEEE
Confidence 122223455544444556777777764 44554433
No 388
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.41 E-value=0.03 Score=50.24 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=30.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.||+|+|+ |.+|+.++..|+..|.. +++++|.+.
T Consensus 22 ~~VlivG~-GglGs~va~~La~~Gvg-~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGA-GGLGSPAAEYLAAAGVG-KLGLVDDDV 55 (228)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCE
Confidence 58999999 99999999999998864 899999765
No 389
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.19 Score=45.92 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=62.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------cC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------LT 87 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~~ 87 (332)
+.+.|+||+|.+|..++..|+..|. +|++++.+. ......++.... ..+..+. +-++.+ ++ +.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRVEKCEELVDKIRADG--GEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999887 888988765 222222232211 1222211 122322 11 24
Q ss_pred CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN 138 (332)
..|.||.++|...... .+. ...+..|+.....+.+.+ .+.. .+.|++++.
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS 146 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGS 146 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence 6799999998643211 111 223455665555554443 3222 344555544
No 390
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.40 E-value=0.028 Score=49.90 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
++|.|+||+|.+|+.++..|++.|. +|+++++++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999888 999999876
No 391
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.40 E-value=0.026 Score=53.62 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.++|+|+|+ |..|...+..+.....+.+|.+++++. .+..+.++.+.. ...+.. ..|+++++++||+|+.+.
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEee
Confidence 368999999 999998877776533356999999876 333444444321 123332 347789999999998874
No 392
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.39 E-value=0.028 Score=50.87 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..||+|+|+ |.+|+.++..|+..|.. +++++|.+.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg-~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVG-NLTLLDFDT 58 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCC-EEEEEeCCc
Confidence 358999999 99999999999998864 899999875
No 393
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.39 E-value=0.027 Score=48.52 Aligned_cols=92 Identities=28% Similarity=0.352 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC-
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG- 97 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g- 97 (332)
..++|+|+|. |.+|+.+|..+..-|. +|+.+|....... ...+. .... .++++.++.||+|+++..
T Consensus 35 ~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv~~~~pl 101 (178)
T PF02826_consen 35 RGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIVSLHLPL 101 (178)
T ss_dssp TTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEEEE-SSS
T ss_pred CCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhhhhhhcc
Confidence 4579999999 9999999999997777 9999999763222 11111 1121 267899999999999853
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
.+...+.- |. +.+....|++++||++
T Consensus 102 t~~T~~li-------~~-------~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 102 TPETRGLI-------NA-------EFLAKMKPGAVLVNVA 127 (178)
T ss_dssp STTTTTSB-------SH-------HHHHTSTTTEEEEESS
T ss_pred ccccceee-------ee-------eeeeccccceEEEecc
Confidence 23222221 11 1223334688888886
No 394
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=96.38 E-value=0.044 Score=51.22 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cH--HHHHHHhcCCCCCeEEEEeC-CCC---HHhhc--CC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL--TG 88 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~--~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--~~ 88 (332)
+++|.|+||+|++|++.+..|+..|+ +++.+|... .. ..+..+.+. ...+..... -.| ++..| ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence 46899999999999999999999999 999999765 11 122223332 123332211 123 22222 34
Q ss_pred CcEEEEcCCCCC-CCC-CChhhhHhhhHHHHHHHHHHHHhhC
Q 019993 89 MDLVIIPAGVPR-KPG-MTRDDLFNINAGIVRTLCEGIAKCC 128 (332)
Q Consensus 89 aDiVi~~~g~~~-~~g-~~r~~~~~~n~~~~~~i~~~i~~~~ 128 (332)
-|-|++.|+... ++. +.+..+...|+-....+.+.+.++.
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 677888876532 111 2345666789999999999999887
No 395
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.36 E-value=0.25 Score=44.83 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEE-EEeCCCCH-------Hhhc
Q 019993 19 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVR-GFLGQPQL-------ENAL 86 (332)
Q Consensus 19 ~~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~-~~~~~~d~-------~~a~ 86 (332)
+.+.+.|+||++ .+|..++..|+..|. +|++.+.++ ....+.++... .....+. ..+...+. .+.+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 345789999965 599999999999888 888988764 22223334322 1101111 01111111 1234
Q ss_pred CCCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 87 TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
...|++|..+|.... + ..+. ...+.-|+.....+.+.+..+- .++.||+++......
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------ 152 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------ 152 (260)
T ss_pred CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence 568999999886421 1 1122 2233445544444444333222 346777776533221
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+.-....|.+.+|..++ +..|++..+
T Consensus 153 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v 188 (260)
T PRK06603 153 VIPNYNVMGVAKAALEASVKYLANDMG--ENNIRVNAI 188 (260)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence 122223455554444556777777765 445544433
No 396
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.36 E-value=0.095 Score=46.75 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=61.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 86 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~ 86 (332)
+.+.|+||+|.+|..++..|+..|. ++++.. .+.. .....++.... ..+..+. .-+|. .++ +
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999987 777754 3321 12223333222 1222111 11221 222 2
Q ss_pred CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecC
Q 019993 87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tN 138 (332)
...|+||+++|...... .+ ....+..|...... +.+.+.+. +.+.|+++|.
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS 140 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISS 140 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEec
Confidence 46899999998753211 11 22334556555444 44444332 3345666654
No 397
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.35 E-value=0.046 Score=49.68 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..||+|+|+ |.+|+.++..|+..|.. ++.++|.+.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg-~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVG-TLTLVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCE
Confidence 469999999 99999999999998864 999999875
No 398
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.34 E-value=0.21 Score=45.87 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=62.4
Q ss_pred CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHH----------hhcC
Q 019993 21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE----------NALT 87 (332)
Q Consensus 21 ~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~----------~a~~ 87 (332)
+.+.|+||+ +.+|..+|..|+..|. .|++.|+++ ......++.+....... ....-+|.+ +.+.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~-~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNEALKKRVEPIAQELGSDYV-YELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCceE-EEecCCCHHHHHHHHHHHHHHcC
Confidence 579999995 5799999999999998 899999875 12222223211111111 111112321 1235
Q ss_pred CCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 019993 88 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (332)
Q Consensus 88 ~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN 138 (332)
..|++|..+|.... + ..+. ...+.-|+.....+.+.+..+- .++.|+++|.
T Consensus 83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 67999999986421 1 1222 2234556544444444333322 2456666653
No 399
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.34 E-value=0.033 Score=51.21 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=44.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+|||+|||. |.+|..++..+...+...+ +.++|.+... +.++.+.. . ...+ +++++.+.++|+|++++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a 69 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECA 69 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcC
Confidence 379999998 9999999988877542124 5678887522 22222211 1 1222 36667779999999996
No 400
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.059 Score=47.51 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=65.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHh---hcC--CCcEEEE
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLEN---ALT--GMDLVII 94 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~---a~~--~aDiVi~ 94 (332)
+++.|+||+|.+|+.++..|+..|. +|+++|.+... ..++..... ..+.. .+...++++ .+. ..|+||+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999999998887 89999987521 112222111 11111 111112222 123 3799999
Q ss_pred cCCCCCCC-----CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCC
Q 019993 95 PAGVPRKP-----GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP 139 (332)
Q Consensus 95 ~~g~~~~~-----g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP 139 (332)
++|..... ..+. ...+..|+.....+.+.+.++. ..+.+++++..
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~ 131 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR 131 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence 98865211 1122 2345667776666666665432 23455555443
No 401
>PLN02928 oxidoreductase family protein
Probab=96.32 E-value=0.019 Score=54.97 Aligned_cols=103 Identities=23% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHH--hcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl--~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..++|+|+|. |.+|+.+|..+..-|. +|+.+|..........+ ................++++.++.||+|++..
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 3469999999 9999999999986666 99999986311111111 00000000000001236889999999999985
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t 137 (332)
. ..+. +-.++. .+.+...-|++++||++
T Consensus 235 P--lt~~---------T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 235 T--LTKE---------TAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred C--CChH---------hhcccC--HHHHhcCCCCeEEEECC
Confidence 2 1111 111111 23344445789999986
No 402
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.31 E-value=0.022 Score=55.12 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=45.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-CCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+++||+|+||+|++|..+...|...+. .+|.++..++..|....-.+.. .......+. ..+ .+.++++|+|+++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 3567999999999999999998888753 3888887654222211111110 001111111 112 24479999999985
No 403
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.29 E-value=0.027 Score=53.38 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+++|||+ |.+|...+..+.......+|.++|++. .+..+.++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence 368999999 999998777665544567999999987 23334444432 223343 236789999999999863
No 404
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.29 E-value=0.0033 Score=60.87 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=44.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEE--Ee--CCCCHHhhcCCCcEEEEcC
Q 019993 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRG--FL--GQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~--~~--~~~d~~~a~~~aDiVi~~~ 96 (332)
|.|+|+ |.+|+.++..|++.+...+|++.|++..+ ..+..+ . ..++.. .. +..++.+.++++|+||.++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~--~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L--GDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T--TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c--ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 99999999999988765599999998622 222222 1 122222 11 1123567889999999998
Q ss_pred CC
Q 019993 97 GV 98 (332)
Q Consensus 97 g~ 98 (332)
|.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 64
No 405
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.28 E-value=0.027 Score=56.32 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC---CCCCeEEEEeCCCCHHhhcCC---CcEE
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---DTGAVVRGFLGQPQLENALTG---MDLV 92 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~---~~~~~v~~~~~~~d~~~a~~~---aDiV 92 (332)
..++|++||- |.||+++|..|+..|+ +|+.+|+...+ +.++.+. .....+.. ..+++++.+. +|+|
T Consensus 5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCCEE
Confidence 3468999999 9999999999999998 99999987522 2222221 00011111 2345555554 9999
Q ss_pred EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 019993 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 140 (332)
Q Consensus 93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~ 140 (332)
|++... -+.+.++...+.... |+.++|..||-.
T Consensus 77 i~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 77 IILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred EEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 998421 122333333344443 666777776543
No 406
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.28 E-value=0.05 Score=47.79 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.||+|+|+ |.+|+.++..|+..|.. +|.++|.+.
T Consensus 20 s~VlviG~-gglGsevak~L~~~GVg-~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGID-SITIVDHRL 53 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEECCc
Confidence 58999999 88999999999999874 899999764
No 407
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.074 Score=54.94 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 87 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------ 87 (332)
.+++.|+||+|.+|..++..|+..|. +|+++++++ ......++.... ..+..+. .-+| .+++++
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999988 899999876 222333343221 1222211 1122 223333
Q ss_pred -CCcEEEEcCCCCCCCC---C-----ChhhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 019993 88 -GMDLVIIPAGVPRKPG---M-----TRDDLFNINAGIVRTL----CEGIAKCCPNATVNLISN 138 (332)
Q Consensus 88 -~aDiVi~~~g~~~~~g---~-----~r~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN 138 (332)
..|++|.++|...... . +....+..|+.....+ .+.+.+. ..+.||++|.
T Consensus 447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS 509 (657)
T PRK07201 447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS 509 (657)
T ss_pred CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence 6899999998642211 1 1122344565544444 4444433 3456666653
No 408
>PLN02712 arogenate dehydrogenase
Probab=96.24 E-value=0.03 Score=58.16 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-CCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVi~~~ 96 (332)
+++||+|||. |.||..++..|...|. +|+.+|.+.....+.+ .. +.. .+++++.+. ++|+||++.
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~G----v~~---~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---LG----VSY---FSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---cC----CeE---eCCHHHHHhcCCCEEEECC
Confidence 5689999998 9999999999988876 8999998752111221 11 122 235556565 599999994
No 409
>PRK06484 short chain dehydrogenase; Validated
Probab=96.24 E-value=0.034 Score=55.77 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=85.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE-EeCCCCHHhh-------cCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGM 89 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-------~~~a 89 (332)
.+++.|+||+|.+|..++..|+..|. +|+++|+++. +.....+... ...+.. ++...+..+. +...
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999998 8999998762 2222222111 011111 1111112222 2457
Q ss_pred cEEEEcCCCCC--CC--CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 019993 90 DLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (332)
Q Consensus 90 DiVi~~~g~~~--~~--g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k 161 (332)
|++|..+|... .+ ..+ ....+..|+.....+.+.+..+- ..+.||++|...... +.|..-
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~ 412 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN 412 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence 99999998742 11 122 23345567666655555554443 346777776543322 223333
Q ss_pred eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.++.+......+.+.++..++ +..|++..+
T Consensus 413 ~Y~asKaal~~l~~~la~e~~--~~gI~vn~v 442 (520)
T PRK06484 413 AYCASKAAVTMLSRSLACEWA--PAGIRVNTV 442 (520)
T ss_pred hhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence 455544334456667776654 344544433
No 410
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=96.23 E-value=0.14 Score=45.29 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=61.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CCc--HHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENALT 87 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~ 87 (332)
.+.|+||+|.+|+.++..|+..|. +++++.. ++. .....++.... ..+..+. .-+|. .+.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999888 8888776 331 11122222111 1222111 11221 12234
Q ss_pred CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCC
Q 019993 88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP 139 (332)
..|.||.++|..... ..+ ....+..|...... +.+.+++. +.+.|++++..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~ 138 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV 138 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence 689999999864321 111 22334556665444 44444433 34566666543
No 411
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.22 E-value=0.049 Score=51.06 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=46.2
Q ss_pred CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe
Q 019993 21 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL 77 (332)
Q Consensus 21 ~kI~IiGa~G~--------------------vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~ 77 (332)
|||.|-|| |+ -|+.+|..|+..|+ +|+++|++.. ......+.+... ..
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence 68888888 74 36788888888888 9999998752 222334444321 11
Q ss_pred CCCCHHhhcCCCcEEEEcC
Q 019993 78 GQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 78 ~~~d~~~a~~~aDiVi~~~ 96 (332)
..+..++.++||+||++.
T Consensus 72 -AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred -cCCHHHHHhCCCEEEEec
Confidence 224579999999999984
No 412
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.21 E-value=0.056 Score=55.39 Aligned_cols=111 Identities=16% Similarity=0.057 Sum_probs=68.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCC--c--HHHH-HHHhcC-----------C-----CCCeEE
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN--T--PGVT-ADISHM-----------D-----TGAVVR 74 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~--~--~~~~-~dl~~~-----------~-----~~~~v~ 74 (332)
+.+.++|.|+||+||+|..++..|+... -..+|+++.+.. . .... .++.+. . ...++.
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 3456789999999999999999888754 345788887643 1 1111 111110 0 012333
Q ss_pred EEeCC-C---------CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 019993 75 GFLGQ-P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 128 (332)
Q Consensus 75 ~~~~~-~---------d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~ 128 (332)
.+.+. + +++...++.|+||++|+... ...........|+....++.+.+.+..
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22211 1 22333467999999987543 233445567889999999999887653
No 413
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.21 E-value=0.3 Score=44.68 Aligned_cols=68 Identities=25% Similarity=0.237 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
++||+|+|++|.||+.++..+...+-..-+.++|.+...... . . ...+.. .+|+++.++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~--~--~~~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--Q--G--ALGVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--c--C--CCCccc---cCCHHHhccCCCEEEECC
Confidence 479999998899999999887765433234458876521111 1 1 112221 357888888999999663
No 414
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.21 Score=44.98 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH------hhcCCCc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE------NALTGMD 90 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~------~a~~~aD 90 (332)
.+++.|+|++|.+|..++..|+..|. +|+++|+++ ......++.... ..++..+. .-+|.+ +.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 35899999999999999999999888 899999876 222233343221 11222111 112221 2346799
Q ss_pred EEEEcCCCCCC-C--CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 019993 91 LVIIPAGVPRK-P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 91 iVi~~~g~~~~-~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN 138 (332)
++|.++|.... + ..+. ...+..|+.. .+.+.+.+.+. ..+.|+++|.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss 140 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG 140 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence 99999886421 1 1122 2223445543 44444444433 2355666553
No 415
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.19 E-value=0.084 Score=44.66 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+.++|+|||- |+.|...|..|...|+ +|+.-..........--.+. + + ..+.+||.+.||+|+++.
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-f----~----v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-F----E----VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-C----e----eccHHHHHhhCCEEEEeC
Confidence 3469999999 9999999999999998 77766665432222212222 1 1 124689999999999983
No 416
>PRK08223 hypothetical protein; Validated
Probab=96.19 E-value=0.028 Score=52.12 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=48.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c----H--------------H--HHHHHhcCCCCCeEEEEe--
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T----P--------------G--VTADISHMDTGAVVRGFL-- 77 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~----~--------------~--~~~dl~~~~~~~~v~~~~-- 77 (332)
.||+|+|+ |.+|+.++..|+..|.. +|.|+|-+. . . . .+..+.+.+...++..+.
T Consensus 28 s~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 28 SRVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred CCEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 48999999 99999999999999875 899999875 1 0 0 111232222233444321
Q ss_pred -CCCCHHhhcCCCcEEEEc
Q 019993 78 -GQPQLENALTGMDLVIIP 95 (332)
Q Consensus 78 -~~~d~~~a~~~aDiVi~~ 95 (332)
...+..+.++++|+||-+
T Consensus 106 l~~~n~~~ll~~~DlVvD~ 124 (287)
T PRK08223 106 IGKENADAFLDGVDVYVDG 124 (287)
T ss_pred cCccCHHHHHhCCCEEEEC
Confidence 123455778999999855
No 417
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.17 E-value=0.022 Score=52.88 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=43.9
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 25 IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
|||. |.+|..++..|+..|+ +|.++|+++.. ..++.... ... +.+..++++++|+||++.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML 60 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 5798 9999999999999888 89999987622 22233221 111 235678899999999985
No 418
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.098 Score=45.24 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHh---hcCCCcEEEEcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLEN---ALTGMDLVIIPAG 97 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~---a~~~aDiVi~~~g 97 (332)
|++.|+||+|.+|..++..|++. . +|++++++.. ....|+.+. .+.++ .+...|++|..+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag 64 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG 64 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence 47999999999999999999887 4 8999987541 000111111 11112 2346899999998
Q ss_pred CCCCC---CCChhh---hHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 019993 98 VPRKP---GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLIS 137 (332)
Q Consensus 98 ~~~~~---g~~r~~---~~~~n~~~~~~i~~~i~~~~-p~a~viv~t 137 (332)
..... +.+..+ .+..|+.....+.+...++- +.+.++++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 64211 122222 23445554445555444332 345555554
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.14 E-value=0.072 Score=53.43 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=66.4
Q ss_pred hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-----------CCC
Q 019993 13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-----------GQP 80 (332)
Q Consensus 13 ~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-----------~~~ 80 (332)
+.-+..++.||+|+|+ |.+|...+..+...|. +|+.+|.++ ....+..+.-.. ..+.... .+.
T Consensus 158 taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~--v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 158 TAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEF--LELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred eccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeE--EEeccccccccccchhhhcch
Confidence 3445566789999999 9999999988888886 799999987 333444332110 0010000 011
Q ss_pred CH--------HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 019993 81 QL--------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 81 d~--------~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP 139 (332)
++ .+.++++|+||.+++.|.++.- .-+.++..+.+ .|.+.|+.++.+
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~m---kpGgvIVdvg~~ 287 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASM---KPGSVIVDLAAE 287 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhc---CCCCEEEEEccC
Confidence 21 1224789999999998743221 11124444444 378888777764
No 420
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.13 E-value=0.071 Score=50.09 Aligned_cols=124 Identities=19% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEEccCC-cHH---HHHHHh---cCC--------CCCeEEE
Q 019993 16 GGAAGFKVAILGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVN-TPG---VTADIS---HMD--------TGAVVRG 75 (332)
Q Consensus 16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~----~-~~~ei~L~D~~~-~~~---~~~dl~---~~~--------~~~~v~~ 75 (332)
+-..+.||+|||+ |+=|+++|..+... + ...+|...=..+ ..+ ...|.- |.. .+..+..
T Consensus 17 ~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 17 AERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 3344679999999 99999999877543 1 122333332222 222 222221 111 1233333
Q ss_pred EeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC------CCCchHHHHH
Q 019993 76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN------PVNSTVPIAA 148 (332)
Q Consensus 76 ~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN------P~~~~t~~~~ 148 (332)
.+|+.++++|||++|+.. | -+.+.+++++|..+- |++..|-.+- |-..+ .+++
T Consensus 96 ---v~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i-~liS 155 (372)
T KOG2711|consen 96 ---VPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGI-RLIS 155 (372)
T ss_pred ---cchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCce-eehH
Confidence 579999999999999984 3 345667888888776 5665555422 22101 1224
Q ss_pred HHHHHhCCCCCC
Q 019993 149 EVFKKAGTYDPK 160 (332)
Q Consensus 149 ~~~~~~~~~~~~ 160 (332)
+...+..|+|..
T Consensus 156 ~iI~~~lgI~~~ 167 (372)
T KOG2711|consen 156 QIIHRALGIPCS 167 (372)
T ss_pred HHHHHHhCCCce
Confidence 555666677665
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.13 E-value=0.038 Score=53.93 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
...+|+|+|+ |.+|..++..+...|. +|+.+|+++.+ ..+..+ . . ... +.+++++++|+||.+.|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G--~--~~~----~~~e~v~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---G--Y--EVM----TMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---C--C--EEc----cHHHHHcCCCEEEECCC
Confidence 3468999999 9999999999988887 78999998732 222221 1 1 111 23578899999999864
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP 139 (332)
.+ ..+.. ..++...+.+++++++.+
T Consensus 267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 32 12211 113333478889898864
No 422
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.12 E-value=0.69 Score=41.95 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=46.6
Q ss_pred CCCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HH-------hh
Q 019993 19 AGFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LE-------NA 85 (332)
Q Consensus 19 ~~~kI~IiGa--~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~-------~a 85 (332)
+.+.+.|+|| ++.+|..+|..|+..|. +|++.++++ ....+.++....... +....+-+| .+ +.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVDKLEERVRKMAAELDSE-LVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHhccCCc-eEEECCCCCHHHHHHHHHHHHHH
Confidence 3457999996 46899999999999998 888887654 222233333221111 111111122 11 22
Q ss_pred cCCCcEEEEcCCCC
Q 019993 86 LTGMDLVIIPAGVP 99 (332)
Q Consensus 86 ~~~aDiVi~~~g~~ 99 (332)
+...|++|..+|..
T Consensus 82 ~g~iD~lVnnAG~~ 95 (261)
T PRK08690 82 WDGLDGLVHSIGFA 95 (261)
T ss_pred hCCCcEEEECCccC
Confidence 35689999999874
No 423
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.11 E-value=0.17 Score=46.80 Aligned_cols=116 Identities=16% Similarity=0.323 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC----------HH
Q 019993 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LE 83 (332)
Q Consensus 17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~ 83 (332)
+.....|.|+||++.+|..+|..+++.+. .+++.|+|. ....+..+.+.. .+..+. +-++ .+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHH
Confidence 34456899999988999999999999887 899999998 344444454431 111111 1112 33
Q ss_pred hhcCCCcEEEEcCCCC-CCCCC--Chhhh---Hhh----hHHHHHHHHHHHHhhCCCcEEEEecC
Q 019993 84 NALTGMDLVIIPAGVP-RKPGM--TRDDL---FNI----NAGIVRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~-~~~g~--~r~~~---~~~----n~~~~~~i~~~i~~~~p~a~viv~tN 138 (332)
+...+.|++|..||+. .++-. ++.+. +.- -...++.+.+.|.+.+ ++.|+.++.
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS 173 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIAS 173 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehh
Confidence 5568999999999964 33332 22221 122 3567788889988664 666665543
No 424
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.11 E-value=0.037 Score=52.43 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+++|||+ |.+|...+..++......+|.++|+++. ...+.++.+. ....+..+ .++++++.+||+|+.+-
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVT 200 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEcc
Confidence 358999999 9999887776654434579999999862 3334444332 12233332 46788999999999874
No 425
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.11 E-value=0.11 Score=45.64 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=45.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+||.|||+ |.+|...+..|...|. +|++++...... ..++.+.. .+......-+ ++.+.++|+||.+.
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT 78 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAAT 78 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcC
Confidence 468999999 9999999999998886 899998643222 22333321 1222111112 46689999988874
No 426
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.10 E-value=0.025 Score=55.74 Aligned_cols=71 Identities=23% Similarity=0.201 Sum_probs=45.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhh-cCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-LTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-~~~aDiVi~~~ 96 (332)
|||.|+|+ |.+|..++..|...+. +++++|.++.. ...+.......-+.. ......++++ ++++|.||++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 68999999 9999999999988887 89999987622 222222110011111 0011224444 78999999984
No 427
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.08 E-value=0.026 Score=53.17 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=47.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+++|||+ |..+...+..+...-.+.+|.++|++. .+..+.++.+ . ...+... .+.++++++||+|+.+
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTA 199 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE-
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEc
Confidence 58999999 999988877666533378999999987 4555667776 2 4455543 3678999999999986
No 428
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.06 E-value=0.04 Score=52.71 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=43.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEccCCcHHHHH-H-HhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-D-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~-d-l~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+||+|+||+|.+|..++..|...+.. +++ +++.++..+... + ..+......+.. . ..+.++.++++|+|+++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECC
Confidence 58999999999999999998876543 666 667654222211 1 111111011121 1 124445446999999985
No 429
>PRK06484 short chain dehydrogenase; Validated
Probab=96.05 E-value=0.05 Score=54.60 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=30.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
+.+.|+||++.+|..++..|+..|. +|+++|++.
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~ 39 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV 39 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999988 899999875
No 430
>PRK08303 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.2 Score=46.83 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~ 55 (332)
.+.+.|+||++.+|..++..|+..|. .|++++++
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~ 41 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGA--TVYVTGRS 41 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecc
Confidence 45799999999999999999999887 89999886
No 431
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.05 E-value=0.035 Score=57.06 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi~~ 95 (332)
+.+|.|+|. |.+|+.++..|...++ +++.+|.|+.+ +..+.+.. .+-+.+ +.++. +..+++||.||.+
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence 368999999 9999999999998888 89999998622 22233322 122222 12232 1235789999998
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 174 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~ 174 (332)
.+ |-+.-..++..+++++|+..|+.- .||.+.- .+++. |- +.++-=+...+.++-
T Consensus 472 ~~---------------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~-Ga--~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CN---------------EPEDTMKIVELCQQHFPHLHILARARGRVEAH------ELLQA-GV--TQFSRETFSSALELG 527 (601)
T ss_pred eC---------------CHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhC-CC--CEEEccHHHHHHHHH
Confidence 42 222333466667888899766554 4665432 23343 32 344433333334444
Q ss_pred HHHHHHhCCCCCCC
Q 019993 175 TFVAEVLGLDPRDV 188 (332)
Q Consensus 175 ~~la~~l~v~~~~v 188 (332)
...=..+|++++++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (601)
T PRK03659 528 RKTLVSLGMHPHQA 541 (601)
T ss_pred HHHHHHcCCCHHHH
Confidence 44445667777665
No 432
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.03 E-value=0.085 Score=52.01 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhh-------cCCCcE
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL 91 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi 91 (332)
.+++.|+||+|.+|..++..|+..|. +++++|.........++........+. ..+...+.+.. +...|+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~ 287 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence 36899999999999999999999887 899999854222222222111111111 11111111111 236899
Q ss_pred EEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 019993 92 VIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (332)
Q Consensus 92 Vi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN 138 (332)
||+++|..... ..+ ....+..|+.....+.+.+... .+++.||++|.
T Consensus 288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 99999865321 122 2234556777777777776542 24466777654
No 433
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.02 E-value=0.034 Score=47.09 Aligned_cols=56 Identities=27% Similarity=0.457 Sum_probs=41.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
+.++|+|||.+..+|..++..|...+. .+.+.+.+ |.++++.++.||+||.++|.
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence 346899999988999999999998876 66666543 24677889999999999887
Q ss_pred C
Q 019993 99 P 99 (332)
Q Consensus 99 ~ 99 (332)
|
T Consensus 90 ~ 90 (160)
T PF02882_consen 90 P 90 (160)
T ss_dssp T
T ss_pred c
Confidence 6
No 434
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.16 Score=46.63 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=62.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh------cCCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------LTGM 89 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------~~~a 89 (332)
.+.|+|| |.+|..++..|. .|. +|++.|+++ ......++.... .++..+. +-+| .+.+ +...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 5677777 899999999986 666 999999876 222233343221 1222111 1122 1222 2468
Q ss_pred cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 019993 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (332)
Q Consensus 90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN 138 (332)
|++|.++|... ...+....+..|+.....+.+.+.++- +++.+++++.
T Consensus 78 d~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS 126 (275)
T PRK06940 78 TGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS 126 (275)
T ss_pred CEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 99999998752 123344556777766666666655442 2344445443
No 435
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.28 Score=43.71 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HH-------hhc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NAL 86 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~ 86 (332)
.+.+.|+||++.+|..++..|++.|. +|+++++++ .+....++.... ..+..+. ..+| .+ +.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35799999989999999999999998 899999876 223333343221 1122111 1112 21 122
Q ss_pred C-CCcEEEEcCCCCCCC----CCChhhh---HhhhH----HHHHHHHHHHHhhCCCcEEEEecC
Q 019993 87 T-GMDLVIIPAGVPRKP----GMTRDDL---FNINA----GIVRTLCEGIAKCCPNATVNLISN 138 (332)
Q Consensus 87 ~-~aDiVi~~~g~~~~~----g~~r~~~---~~~n~----~~~~~i~~~i~~~~p~a~viv~tN 138 (332)
. .-|++|..+|....+ ..+..++ +..|. ...+.+.+.+.+....+.|+++|.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3 689999998743221 1222222 22233 334455566655444566777664
No 436
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.97 E-value=0.47 Score=43.47 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCCCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCC-eEEE-EeCCCCH-------H
Q 019993 16 GGAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGA-VVRG-FLGQPQL-------E 83 (332)
Q Consensus 16 ~~~~~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~-~v~~-~~~~~d~-------~ 83 (332)
+..+.+++.|+||+ +.+|..+|..|+..|. .|++.++++ ....+.++....... .+.. .+...+. .
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 83 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE 83 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH
Confidence 34445679999995 5799999999999998 888887653 222222232211001 1110 1000111 1
Q ss_pred hhcCCCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHH
Q 019993 84 NALTGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK 152 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~ 152 (332)
+.+...|++|..+|.... + ..+. ...+.-|+.....+.+.+.++- .++.||++|.....
T Consensus 84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~---------- 153 (272)
T PRK08159 84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE---------- 153 (272)
T ss_pred HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc----------
Confidence 223468999999986431 1 1222 2334556655555555444332 24666666542211
Q ss_pred HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.+.|..-.++.+.-....+.+.++..+. +..|++..+
T Consensus 154 --~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v 190 (272)
T PRK08159 154 --KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRVNAI 190 (272)
T ss_pred --cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEEEEe
Confidence 1123223455554444456667777664 445544444
No 437
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.96 E-value=0.13 Score=43.52 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+||.|+|| |.+|...+..|+..|. +|++++...... ..++. ...+.. ..-. ++.++++|+||.+.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~-l~~l~----~i~~~~--~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKE-MKELP----YITWKQ--KTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHH-HHhcc----CcEEEe--cccC-hhcCCCceEEEECC
Confidence 368999999 9999999999999888 899997542222 22221 111211 1112 35689999999873
No 438
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.94 E-value=0.052 Score=50.93 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+|+|+|+ |.+|...+..+.......+|.++|++. .+..+.++... ...+. . .+.++++.+||+|+.+-
T Consensus 125 ~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~-~---~~~~~av~~aDiVitaT 196 (304)
T PRK07340 125 PGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE-P---LDGEAIPEAVDLVVTAT 196 (304)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE-E---CCHHHHhhcCCEEEEcc
Confidence 368999999 999999988886533335899999986 33444445432 12222 1 35678999999999974
No 439
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.93 E-value=0.028 Score=48.03 Aligned_cols=56 Identities=29% Similarity=0.488 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 18 AAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 18 ~~~~kI~IiGa~G~-vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
....||+|+|+ |. +|..++..|...+. +|.+++++. .++.+.+++||+||.+.
T Consensus 42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 45579999999 86 58889999988877 788888541 25677899999999997
Q ss_pred CCC
Q 019993 97 GVP 99 (332)
Q Consensus 97 g~~ 99 (332)
+.|
T Consensus 96 ~~~ 98 (168)
T cd01080 96 GKP 98 (168)
T ss_pred CCC
Confidence 765
No 440
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.93 E-value=0.14 Score=45.20 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..||+|||+ |.+|..-+..|+..|. .|+++|.+... ...++.... .+.......+ .+.+.++|+||.+-
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at 77 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAAT 77 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECC
Confidence 358999999 9999999999998887 89999976432 222343321 3333222223 46689999999884
No 441
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.88 E-value=0.066 Score=51.69 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..||+|+|+ |.+|+.++..|+..|.. +|+++|.+.
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg-~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVG-TITLIDDDT 75 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEeCCE
Confidence 358999999 99999999999998864 899999874
No 442
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.88 E-value=0.031 Score=54.78 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+..+|+|+|+ |.+|..++..|...|. .+|+++|++..+ ..+..+. ..... ..++.+++.++|+||.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g-----~~~i~---~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG-----GEAVK---FEDLEEYLAEADIVISS 247 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC-----CeEee---HHHHHHHHhhCCEEEEC
Confidence 44579999999 9999999999988773 389999987522 2222221 11111 13567889999999998
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchH
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV 144 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t 144 (332)
.+.+..- . +. +..+.+.... ...+++-.++|-|+-.
T Consensus 248 T~s~~~i-i--------~~----e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 248 TGAPHPI-V--------SK----EDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred CCCCCce-E--------cH----HHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 6544210 0 11 1112221111 2347778899988863
No 443
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.87 E-value=0.039 Score=51.75 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
..+++|||+ |..|...+..+.....+.+|.++|++. ....+.++.+.. ...+... .+.++++++||+|+.+
T Consensus 117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEe
Confidence 468999999 999988877776655568999999987 344455555421 2344443 3578999999999986
No 444
>PRK08017 oxidoreductase; Provisional
Probab=95.85 E-value=0.06 Score=48.33 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=30.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
++|.|+||+|.+|..++..|++.|+ +|++++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998887 899998865
No 445
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.85 E-value=0.058 Score=51.13 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=49.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.+++|||+ |..+...+..|.......+|.+++++. .+..+.++.+.. ...+.. ..++++++.+||+|+.+-
T Consensus 130 ~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEec
Confidence 58999999 999998888776433346899999986 334444454321 122332 246788999999999974
No 446
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.84 E-value=0.12 Score=45.43 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=30.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.||+|+|+ |.+|+.++..|+..|. .+|+++|.+.
T Consensus 22 s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 58999999 8899999999999987 4899999874
No 447
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.84 E-value=0.089 Score=50.85 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~ 55 (332)
..||+|+|+ |.+|+.++..|+..|.. +|.++|.+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gvg-~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGVG-TLGIVDHD 168 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 358999999 99999999999998874 89999987
No 448
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.82 E-value=0.088 Score=50.54 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=30.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.||+|+|+ |.+|+.++..|+..|.. +|.++|.+.
T Consensus 29 ~~VlivG~-GGlGs~~a~~La~~Gvg-~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGA-GGLGSPALLYLAGAGVG-HITIIDDDT 62 (355)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence 58999999 99999999999998874 899999875
No 449
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.82 E-value=0.034 Score=53.25 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=46.1
Q ss_pred CeEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~-~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
+||+|+||+|.||+.+...|. +..+ ..+++++...+..|....+... ...+.. .++ .+++++.|+|++++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 5454 3688888875422221111111 112222 222 247899999999876
No 450
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.82 E-value=0.51 Score=42.68 Aligned_cols=158 Identities=12% Similarity=0.105 Sum_probs=79.2
Q ss_pred CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCC-eEEE-EeCCCCHH-------hhcC
Q 019993 20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGA-VVRG-FLGQPQLE-------NALT 87 (332)
Q Consensus 20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~-~v~~-~~~~~d~~-------~a~~ 87 (332)
.+.+.|+||+ +.+|..+|..|++.|. +|++.|+++. .....++....... .+.. .+...+.+ +.+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 3578999996 3799999999999988 8999998752 11122222111000 1110 11011111 2235
Q ss_pred CCcEEEEcCCCCCCC-------CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC
Q 019993 88 GMDLVIIPAGVPRKP-------GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT 156 (332)
Q Consensus 88 ~aDiVi~~~g~~~~~-------g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~ 156 (332)
..|++|..+|..... ..+ ....+.-|+.....+.+.+..+- ..+.|++++...... .
T Consensus 88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------------~ 155 (258)
T PRK07533 88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------------V 155 (258)
T ss_pred CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc------------C
Confidence 679999999864311 112 22334556555555544443332 245666665322111 1
Q ss_pred CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
.|..-.++.+.-.-..+.+.++..++ +..|++..+
T Consensus 156 ~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~v 190 (258)
T PRK07533 156 VENYNLMGPVKAALESSVRYLAAELG--PKGIRVHAI 190 (258)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence 12112344443333455666776664 445544443
No 451
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.81 E-value=0.043 Score=54.28 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH-HHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
..++|+|+|. |.+|..+|..+...|. +|+.+|+++.+. .+.. + . . .. .+++++++.||+|+.+.|
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G--~--~~----~~leell~~ADIVI~atG 318 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G--Y--QV----VTLEDVVETADIFVTATG 318 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C--c--ee----ccHHHHHhcCCEEEECCC
Confidence 3468999999 9999999999987776 899998876322 1111 1 1 1 11 246788999999999854
Q ss_pred CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 019993 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (332)
Q Consensus 98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP 139 (332)
.+ .++. .+.+....|.+++++++-.
T Consensus 319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 22 1111 1234444588999998754
No 452
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.80 E-value=0.67 Score=41.94 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=79.1
Q ss_pred CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 019993 21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL 86 (332)
Q Consensus 21 ~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~ 86 (332)
+.+.|+||+ +.+|..++..|++.|. +|++.+++. ......++.+......+..+. +-+|. .+.+
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 579999995 6899999999999998 899988653 111122222111011121111 11121 1223
Q ss_pred CCCcEEEEcCCCCCC-----C--CCChhh---hHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 019993 87 TGMDLVIIPAGVPRK-----P--GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG 155 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~-----~--g~~r~~---~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~ 155 (332)
...|++|.++|.... + ..+..+ .+.-|......+.+.+.++- +.+.||++|......
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------ 153 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER------------ 153 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc------------
Confidence 558999999886421 1 122222 22334444333333333222 356777776433221
Q ss_pred CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+...-..|.+.++..+. +..|++..+
T Consensus 154 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~v 189 (257)
T PRK08594 154 VVQNYNVMGVAKASLEASVKYLANDLG--KDGIRVNAI 189 (257)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEEeee
Confidence 112222345544444556677777664 444544433
No 453
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.79 E-value=0.03 Score=48.80 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..++|+|||.|.-||..++..|+..+. .|.++|++. .......+.|..+ ..... +.++.+.++.||+||.++
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~~--~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTDE--EAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccch--hhHHHHHhhhCCEEEEcc
Confidence 346899999999999999999998886 899999876 1110011112110 00000 112668899999999999
Q ss_pred CCC
Q 019993 97 GVP 99 (332)
Q Consensus 97 g~~ 99 (332)
|.|
T Consensus 135 G~~ 137 (197)
T cd01079 135 PSP 137 (197)
T ss_pred CCC
Confidence 876
No 454
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.78 E-value=0.059 Score=51.47 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+++|||+ |..+...+..+..-..+.+|.++|++. .+..+.++.+. ...+.. ..+.++++++||+|+.+-
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 367999999 999988776665544567999999987 34445556542 223443 246789999999999864
No 455
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.76 E-value=0.093 Score=51.47 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
...+|+|+|. |.+|..++..+...|. +|+.+|+++.+.... ..+ . . .. .+++++++++|+||.+.|.
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G--~--~v----~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G--F--RV----MTMEEAAELGDIFVTATGN 277 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C--C--Ee----cCHHHHHhCCCEEEECCCC
Confidence 4468999999 9999999999988887 899999987332111 111 1 1 11 1357889999999987532
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
+ .++. .+.+....+.+++++++-+.
T Consensus 278 ~---------------~vI~--~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 278 K---------------DVIT--AEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred H---------------HHHH--HHHHhcCCCCCEEEEcCCCC
Confidence 1 2222 12233334678888887443
No 456
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.76 E-value=0.15 Score=47.02 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..+|+|+|+ |.+|+.++..|+..|.. +|.|+|.+.
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GVg-~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGIG-AITLIDMDD 64 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC-EEEEEeCCE
Confidence 358999999 99999999999999864 899999874
No 457
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.75 E-value=0.018 Score=54.96 Aligned_cols=71 Identities=24% Similarity=0.410 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++||+|+||+|++|..+...|...++ ..++.++...+..|...+. . ...+... ..+ .+++.++|+||++.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~--~~~~~v~--~~~-~~~~~~~D~vf~a~p 78 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--E--GRDYTVE--ELT-EDSFDGVDIALFSAG 78 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--c--CceeEEE--eCC-HHHHcCCCEEEECCC
Confidence 37999999999999999998887543 4577766554322222211 1 1222221 123 356799999999865
No 458
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.74 E-value=0.021 Score=53.86 Aligned_cols=74 Identities=26% Similarity=0.214 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--CCeEEEEeCCCCHHh-hcCCCcEEEEc
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLEN-ALTGMDLVIIP 95 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~-a~~~aDiVi~~ 95 (332)
+++||+|+||+|+.|..+...|...+.. |+.++...+..|....-.+... ...+... ..|.++ ...+||+||++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence 3579999999999999999999888754 7888887653443332222221 1223321 122222 35669999998
No 459
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.74 E-value=0.037 Score=53.37 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=53.1
Q ss_pred hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcE
Q 019993 13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDL 91 (332)
Q Consensus 13 ~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDi 91 (332)
+.-++.++.||+|+|+ |.+|...+..+...|. +|..+|++..+. ..+.... ...+.. .....++.+.++++|+
T Consensus 160 ~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 160 GGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADL 233 (370)
T ss_pred cCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCE
Confidence 3334456778999999 9999999999988887 899999875221 1121111 111211 1111346678899999
Q ss_pred EEEcCCCC
Q 019993 92 VIIPAGVP 99 (332)
Q Consensus 92 Vi~~~g~~ 99 (332)
||.+.+.+
T Consensus 234 VI~a~~~~ 241 (370)
T TIGR00518 234 LIGAVLIP 241 (370)
T ss_pred EEEccccC
Confidence 99997654
No 460
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.74 E-value=0.049 Score=51.33 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+|+|||+ |.+|...+..+.......+|.++|++. .+..+.++.+. ...+... .+.++++++||+|+.+.
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCAT 197 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEee
Confidence 368999999 999999987665432245999999876 33444445432 1223332 35678899999997653
No 461
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.069 Score=52.65 Aligned_cols=123 Identities=24% Similarity=0.316 Sum_probs=69.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.++|.|+|+ |.+|..+|..|+..|+ +|+++|.+... ....++.... ..+. ..... .+...++|+||.++
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~--~~~~--~~~~~-~~~~~~~d~vv~~~ 76 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG--IELV--LGEYP-EEFLEGVDLVVVSP 76 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CEEE--eCCcc-hhHhhcCCEEEECC
Confidence 468999999 8899999999999998 99999997522 1223332211 2222 11111 24467899999998
Q ss_pred CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC--CchHHHHHHHHHH
Q 019993 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV--NSTVPIAAEVFKK 153 (332)
Q Consensus 97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~--~~~t~~~~~~~~~ 153 (332)
|.+.... .....-..+++++.......+.. + ..+|-+|=.. .+.+.+++.++..
T Consensus 77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8642211 11111234566655544433322 2 3355554333 3444555555543
No 462
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=95.72 E-value=0.28 Score=44.26 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=32.2
Q ss_pred eEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEccCC--cHHHHHHHh
Q 019993 22 KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN--TPGVTADIS 65 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~----~~~~~ei~L~D~~~--~~~~~~dl~ 65 (332)
.+.|+||++.+|..++..|+. .|. .|++.++++ ......++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~~~~~~~~~~l~ 49 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARNDEALRQLKAEIG 49 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCHHHHHHHHHHHH
Confidence 478999999999999998886 466 899999876 333344454
No 463
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.71 E-value=0.062 Score=52.37 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
....+|+|+|. |.+|..++..+...|. +|+.+|.++.+.... ..+ . . .. .+.+++++++|+||.+.|
T Consensus 193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G--~--~v----~~leeal~~aDVVItaTG 259 (406)
T TIGR00936 193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-G--F--RV----MTMEEAAKIGDIFITATG 259 (406)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-C--C--Ee----CCHHHHHhcCCEEEECCC
Confidence 34569999999 9999999999987776 899999887322111 111 1 1 11 134678999999998753
No 464
>PRK07791 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.37 Score=44.41 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~ 55 (332)
.+.+.|+||++.+|..++..|+..|. +|+++|.+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~ 39 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG 39 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCC
Confidence 35799999999999999999999888 88998875
No 465
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.70 E-value=0.098 Score=50.91 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
..||+|+|+ |.+|+.++..|+..|.. +|.|+|-+.
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gvg-~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGVG-TLGIVEFDV 76 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCE
Confidence 358999999 99999999999998875 899999875
No 466
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.65 E-value=0.029 Score=53.35 Aligned_cols=71 Identities=23% Similarity=0.478 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++||+|+||+|++|..++..|...++ ..+|..+-.++..+...++. ...+... ..+ ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~----g~~i~v~--d~~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFK----GKELKVE--DLT-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeC----CceeEEe--eCC-HHHHcCCCEEEECCC
Confidence 36999999999999999999988653 34777775543222222221 1223322 112 245689999999864
No 467
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.64 E-value=0.043 Score=55.47 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.++|+|+|- |.+|+.+|..|..-|. +|+.||.........++ . +.. ..++++.+++||+|++..
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFITVHT 201 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEEEEcc
Confidence 368999999 9999999999987676 99999975322222211 1 121 135789999999999984
No 468
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.64 E-value=0.13 Score=47.78 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=51.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-------------------HH--HHHHHhcCCCCCeEEEEeC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------------------PG--VTADISHMDTGAVVRGFLG 78 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-------------------~~--~~~dl~~~~~~~~v~~~~~ 78 (332)
..||.|+|+ |.+|+.+|..|+..|.. +|.|+|.+.. ++ .+..|...+...++..+..
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 358999999 99999999999999874 8999998750 01 1122333333445554433
Q ss_pred CCCHHhhcCCCcEEEEcC
Q 019993 79 QPQLENALTGMDLVIIPA 96 (332)
Q Consensus 79 ~~d~~~a~~~aDiVi~~~ 96 (332)
..+ ++-+.+.|+||.+.
T Consensus 97 ~~~-~~~l~~fdvVV~~~ 113 (286)
T cd01491 97 PLT-TDELLKFQVVVLTD 113 (286)
T ss_pred cCC-HHHHhcCCEEEEec
Confidence 323 57789999999883
No 469
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.63 E-value=0.042 Score=55.51 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
.++|+|+|. |.+|+.+|..+..-|. +|+.||.........++ .+... ++++.++.||+|++..
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~l 202 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHT 202 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEcc
Confidence 468999999 9999999999987677 99999975422221111 11221 4688999999999985
No 470
>PLN02494 adenosylhomocysteinase
Probab=95.62 E-value=0.069 Score=52.79 Aligned_cols=90 Identities=20% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
..+|+|+|. |.+|..+|..+...|. +|+.+|+++.+ ..+.+ +. + . .. +++++++.+|+||.+.|.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G-~--~--vv----~leEal~~ADVVI~tTGt 319 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EG-Y--Q--VL----TLEDVVSEADIFVTTTGN 319 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cC-C--e--ec----cHHHHHhhCCEEEECCCC
Confidence 468999999 9999999999987776 89999988632 22221 11 1 1 11 356789999999997542
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
. .++. .+.+....+++++++++-+.
T Consensus 320 ~---------------~vI~--~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 320 K---------------DIIM--VDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred c---------------cchH--HHHHhcCCCCCEEEEcCCCC
Confidence 2 1110 23333345789999998753
No 471
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=95.61 E-value=0.39 Score=44.98 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA------- 85 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------- 85 (332)
.+.+.|+||++.+|..++..|+..| . .|++.++++. .....++... ...+..+. .-+|. +++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999888 7 8999988762 2222333211 12222111 11221 111
Q ss_pred cCCCcEEEEcCCCCCCC----CCCh---hhhHhhhHH----HHHHHHHHHHhhCC-CcEEEEecC
Q 019993 86 LTGMDLVIIPAGVPRKP----GMTR---DDLFNINAG----IVRTLCEGIAKCCP-NATVNLISN 138 (332)
Q Consensus 86 ~~~aDiVi~~~g~~~~~----g~~r---~~~~~~n~~----~~~~i~~~i~~~~p-~a~viv~tN 138 (332)
+...|++|..+|..... ..+. ...+..|.. .++.+.+.+.+... .+.||++|.
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 34689999999863221 1222 222344543 45566666665432 356666643
No 472
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.60 E-value=0.057 Score=44.73 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
+.++|+|+|.+..+|..++..|...+. ++.++|.+ +.+++++++.||+||.+.|.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPK 81 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCC
Confidence 346899999988999999988887776 77777643 22567889999999999876
Q ss_pred C
Q 019993 99 P 99 (332)
Q Consensus 99 ~ 99 (332)
+
T Consensus 82 ~ 82 (140)
T cd05212 82 P 82 (140)
T ss_pred C
Confidence 5
No 473
>PRK13529 malate dehydrogenase; Provisional
Probab=95.60 E-value=0.087 Score=52.99 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=71.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEccCC--c--H----HHHHHHhcCCCCCeEEEE---eCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--T--P----GVTADISHMDTGAVVRGF---LGQ 79 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~----~~~~-----~ei~L~D~~~--~--~----~~~~dl~~~~~~~~v~~~---~~~ 79 (332)
..||++.|| |..|..+|..|.. .|+- .+++++|.+- . + .....+.+.. ...... ...
T Consensus 295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~ 371 (563)
T PRK13529 295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV 371 (563)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence 469999999 9999999987765 4652 5899999875 1 1 1111222211 111100 012
Q ss_pred CCHHhhcCCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 019993 80 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (332)
Q Consensus 80 ~d~~~a~~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~ 141 (332)
.++.++++++ |++|=+.+.+ | -+.+++.+.|.+++++.+|.-.|||..
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 4789999999 9988765443 2 134588889999999999888899997
No 474
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.60 E-value=0.17 Score=45.98 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEccCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN 56 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~ 56 (332)
++.||.|||+ |.+|+.++..|+..|. ..+|+++|.+.
T Consensus 10 ~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3469999999 9999999999987642 12999999875
No 475
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.59 E-value=0.075 Score=51.09 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=43.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~-~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++|+|+||+|.+|..+...++.. .+ ..+++++.....-+....+.. .....+. ..+ .+.++++|+|+++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~-~~~~~~~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFD-IDALKKLDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCC-hhHhcCCCEEEECCC
Confidence 68999999999999999855554 44 456888765432122211221 1112221 123 356799999999875
No 476
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.58 E-value=0.059 Score=52.97 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
.+..+|+|+|+ |.+|..++..|...|. .+|+++|++..+ ..+.++. ..... ..++.+++.++|+||.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISS 249 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEEC
Confidence 34579999999 9999999998887664 379999987522 2222221 11211 13566788999999998
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCCCCchH
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTV 144 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP~~~~t 144 (332)
.+.+..- . +...+.. .+... ....+++-.++|-|+-.
T Consensus 250 T~s~~~~-i--------~~~~l~~---~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 250 TGAPHPI-I--------GKGMVER---ALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred CCCCCcE-E--------cHHHHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence 6654211 0 1111111 11111 24567788899998863
No 477
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.58 E-value=0.059 Score=55.62 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi~~ 95 (332)
..+|.|+|. |.+|+.++..|...+. +++++|.|+.+ +..+.+.. ..-+.+ +.++. +..+++||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence 368999999 9999999999998888 89999998632 22232222 122222 12332 1345689999998
Q ss_pred CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 019993 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 174 (332)
Q Consensus 96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~ 174 (332)
...+ ..| ..++..+++..|+..++.-+ |+... +.+++ .|- +.++--+.-.+.++.
T Consensus 472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~------~~L~~-~Ga--d~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHY------IRLRQ-AGV--EKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH------HHHHH-CCC--CEEehhhHhHHHHHH
Confidence 3211 333 34556677778987665544 44321 12233 233 344433444455555
Q ss_pred HHHHHHhCCCCCCC
Q 019993 175 TFVAEVLGLDPRDV 188 (332)
Q Consensus 175 ~~la~~l~v~~~~v 188 (332)
+.+-+.+|++++++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (621)
T PRK03562 528 RLVLESLGLGPYEA 541 (621)
T ss_pred HHHHHHcCCCHHHH
Confidence 56666777776443
No 478
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.56 E-value=0.024 Score=54.02 Aligned_cols=72 Identities=24% Similarity=0.472 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+.+||+|+||+|.+|..+...|...+ + ..+|.++...+..|+...+.. ..+... ..| .+.++++|+|++++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~--~~~-~~~~~~~Divf~a~ 76 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQ--EAK-INSFEGVDIAFFSA 76 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEE--eCC-HHHhcCCCEEEECC
Confidence 45799999999999999999998544 3 345888876543333222221 123322 124 35679999999986
Q ss_pred C
Q 019993 97 G 97 (332)
Q Consensus 97 g 97 (332)
+
T Consensus 77 ~ 77 (347)
T PRK06728 77 G 77 (347)
T ss_pred C
Confidence 4
No 479
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.53 E-value=0.1 Score=40.62 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=43.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+|.|||+ |.+|..-+..|+..|. +|.++.... .. ... ...+.. ..+++.+.++|+|+.+.
T Consensus 7 ~~~vlVvGg-G~va~~k~~~Ll~~gA--~v~vis~~~--~~---~~~---~i~~~~----~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 7 GKRVLVVGG-GPVAARKARLLLEAGA--KVTVISPEI--EF---SEG---LIQLIR----REFEEDLDGADLVFAAT 68 (103)
T ss_dssp T-EEEEEEE-SHHHHHHHHHHCCCTB--EEEEEESSE--HH---HHT---SCEEEE----SS-GGGCTTESEEEE-S
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCch--hh---hhh---HHHHHh----hhHHHHHhhheEEEecC
Confidence 458999999 9999999999999886 999998763 11 111 122221 23457799999999874
No 480
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.50 E-value=0.071 Score=50.31 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+++|+|+ |..+...+..+.....+.+|.++|++.. ...+..+.+. ...+... .+.++++++||+|+.+-
T Consensus 128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence 368999999 9999888877766555689999999873 3333334332 2334432 35689999999999863
No 481
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.50 E-value=0.03 Score=53.32 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=44.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++||+|+||+|++|.-+...|...+ ...+|.++-..+..|....+.. ..+... ..+. +.++++|+|+++.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~--~~~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR--EVDS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe--eCCh-HHhcCCCEEEEcCC
Confidence 4799999999999999999998654 2447777755442232222211 122321 1232 34789999999853
No 482
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.49 E-value=0.059 Score=50.77 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHH-HHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g 97 (332)
++||+|+||+|.||+.+...|.... ++.++.++=..+..|.. .++..-.. .+.. ...| ...++++|+|+.++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~-~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAAD-EFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--cccc-ccccccCCEEEEeCc
Confidence 3689999999999999999998854 46667777665433332 33322111 1110 0123 255779999999986
No 483
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.46 E-value=0.092 Score=53.01 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEccCC--cHH-------HHHHHhcCCCCCeEEEEeCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPG-------VTADISHMDTGAVVRGFLGQP 80 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~-----~~~-----~~ei~L~D~~~--~~~-------~~~dl~~~~~~~~v~~~~~~~ 80 (332)
..||++.|| |..|..+|..|.. .|+ ..+++++|.+- ..+ ....+.+. .. ...
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-----~~---~~~ 391 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-----HE---PGA 391 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-----cc---cCC
Confidence 469999999 9999999987765 354 25899999875 111 11112211 11 124
Q ss_pred CHHhhcCC--CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 81 QLENALTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 81 d~~~a~~~--aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
++.+++++ +|++|=+.+.+ | -+.+++.+.|.+++++.+|.-.|||.
T Consensus 392 ~L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 392 SLLEAVKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT 439 (581)
T ss_pred CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 78999999 89988775543 2 13457888899999999988889998
No 484
>PRK07411 hypothetical protein; Validated
Probab=95.41 E-value=0.15 Score=49.68 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cH----------------HHHHHHhcCCCCCeEEEEeC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLG 78 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~----------------~~~~dl~~~~~~~~v~~~~~ 78 (332)
..||+|+|+ |.+|+.++..|+..|.. +|.|+|-+. +. ..+..+.+.....++..+..
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg-~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIG-RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 358999999 99999999999999874 999999874 10 11122333322334443321
Q ss_pred --C-CCHHhhcCCCcEEEEcC
Q 019993 79 --Q-PQLENALTGMDLVIIPA 96 (332)
Q Consensus 79 --~-~d~~~a~~~aDiVi~~~ 96 (332)
+ .+..+-++++|+||.+.
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd~~ 136 (390)
T PRK07411 116 RLSSENALDILAPYDVVVDGT 136 (390)
T ss_pred ccCHHhHHHHHhCCCEEEECC
Confidence 1 12235689999999984
No 485
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.40 E-value=0.93 Score=41.10 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=28.3
Q ss_pred CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEccC
Q 019993 20 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVV 55 (332)
Q Consensus 20 ~~kI~IiGa--~G~vG~~~a~~l~~~~~~~ei~L~D~~ 55 (332)
.+.+.|+|| ++.+|..++..|+..|. +|++.+..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~--~v~~~~~~ 41 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA--ELAFTYVG 41 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC--eEEEEccc
Confidence 457999996 46899999999999998 88888653
No 486
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=95.40 E-value=0.16 Score=48.46 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=43.9
Q ss_pred CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEccCCcH--H-HHHHHhcCCCCCeEEEEe
Q 019993 21 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTGAVVRGFL 77 (332)
Q Consensus 21 ~kI~IiGa~G~--------------------vG~~~a~~l~~~~~~~ei~L~D~~~~~--~-~~~dl~~~~~~~~v~~~~ 77 (332)
|||.|-|| |+ =|..+|..|+..|+ +|+++|+++.. . ....+... .+..
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~-- 71 (342)
T PRK12557 1 MKVSVYGA-GNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV-- 71 (342)
T ss_pred CeeEEEcC-cchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE--
Confidence 68888888 74 35677888888887 99999987621 1 22223221 1232
Q ss_pred CCCCHHhhcCCCcEEEEcC
Q 019993 78 GQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 78 ~~~d~~~a~~~aDiVi~~~ 96 (332)
+++..+++++||+||++.
T Consensus 72 -asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFT 89 (342)
T ss_pred -eCCHHHHHhCCCEEEEEC
Confidence 235568889999999984
No 487
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.049 Score=50.57 Aligned_cols=56 Identities=20% Similarity=0.406 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~ 98 (332)
+.++|+|+|++|.+|..++..|+..+. +|.+++.. +.++.+.+++||+||.+.|.
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~ 212 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK 212 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence 346899999944599999999988876 88888641 22456778999999999864
Q ss_pred C
Q 019993 99 P 99 (332)
Q Consensus 99 ~ 99 (332)
|
T Consensus 213 ~ 213 (283)
T PRK14192 213 P 213 (283)
T ss_pred C
Confidence 4
No 488
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.38 E-value=0.11 Score=50.40 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEc
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP 95 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~ 95 (332)
...++|||+ |..+...+..++.. +.+.+|.++|+++ +...+.++.+.... ..+... .+.++++++||+|+.+
T Consensus 155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvta 230 (379)
T PRK06199 155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTYC 230 (379)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEEc
Confidence 368999999 99998887777653 3367999999987 34455556543111 134442 3678999999999975
Q ss_pred C
Q 019993 96 A 96 (332)
Q Consensus 96 ~ 96 (332)
-
T Consensus 231 T 231 (379)
T PRK06199 231 N 231 (379)
T ss_pred c
Confidence 3
No 489
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.37 E-value=0.1 Score=52.42 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEccCC--c--HH-----HHHHHhcCCCCCeEEEEeCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--T--PG-----VTADISHMDTGAVVRGFLGQPQ 81 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~----~~~-----~~ei~L~D~~~--~--~~-----~~~dl~~~~~~~~v~~~~~~~d 81 (332)
..||++.|| |..|..+|..|.. .|+ ...++++|.+- . +. ....+.+...... .. ...+
T Consensus 297 d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~--~~-~~~~ 372 (559)
T PTZ00317 297 EQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAE--DS-SLKT 372 (559)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccc--cc-cCCC
Confidence 469999999 9999999987763 565 25899999875 1 11 1111222110010 00 1247
Q ss_pred HHhhcCCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 82 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 82 ~~~a~~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
+.++++++ |++|=+.+.+ | -+.+++.+.|.+++++.+|.-.|||.
T Consensus 373 L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~rPIIFaLSNPt 419 (559)
T PTZ00317 373 LEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNVERPIIFPLSNPT 419 (559)
T ss_pred HHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 89999999 9988765544 2 13458889999999999988889998
No 490
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.041 Score=49.76 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=49.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
|+|.|+||+|++|++++..|+..++ +|+..-++....... . ...............+..+++|.|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 5899999999999999999998877 777776654222222 2 211111112222345778899999999986544
No 491
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.35 E-value=0.11 Score=48.01 Aligned_cols=99 Identities=16% Similarity=0.289 Sum_probs=67.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~ 100 (332)
++|..||- |.+|++.+..|+..|+ .|+.||++. ....++.+.. ..+.. .+.|..+++|+||...+.|.
T Consensus 36 ~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~G--a~v~~-----sPaeVae~sDvvitmv~~~~ 103 (327)
T KOG0409|consen 36 TRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAG--ARVAN-----SPAEVAEDSDVVITMVPNPK 103 (327)
T ss_pred ceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhc--hhhhC-----CHHHHHhhcCEEEEEcCChH
Confidence 68999999 9999999999999999 999999864 4445566543 22221 24688899999999866431
Q ss_pred ----------------CCCCCh-hhhHhhhHHHHHHHHHHHHhhCCCcEE
Q 019993 101 ----------------KPGMTR-DDLFNINAGIVRTLCEGIAKCCPNATV 133 (332)
Q Consensus 101 ----------------~~g~~r-~~~~~~n~~~~~~i~~~i~~~~p~a~v 133 (332)
++|... .|.-.-.-...+++.+.++.. ++|.
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~--~~~~ 151 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK--GGRF 151 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC--CCeE
Confidence 122211 233233456778888888743 5544
No 492
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.35 E-value=0.17 Score=45.57 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 56 (332)
.||+|+|+ |.+|+.++..|+..|.. +++|+|-+.
T Consensus 12 ~~VlVvG~-GGvGs~va~~Lar~GVg-~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGL-GGVGSWAAEALARSGVG-KLTLIDFDV 45 (231)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCE
Confidence 48999999 99999999999999874 999999875
No 493
>PRK07877 hypothetical protein; Provisional
Probab=95.34 E-value=0.1 Score=54.54 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=49.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cHHH---------------HHHHhcCCCCCeEEEEeC--
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---------------TADISHMDTGAVVRGFLG-- 78 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~~-- 78 (332)
.||+|+|+ | +|++++..|+..|.+.+|.|+|-+. +.-+ +..+...+...++..+..
T Consensus 108 ~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 48999999 9 9999999999999766999999875 1101 112222222344444321
Q ss_pred -CCCHHhhcCCCcEEEEcC
Q 019993 79 -QPQLENALTGMDLVIIPA 96 (332)
Q Consensus 79 -~~d~~~a~~~aDiVi~~~ 96 (332)
..+..+-++++|+||-+.
T Consensus 186 ~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 186 TEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred CHHHHHHHhcCCCEEEECC
Confidence 134556678999999983
No 494
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.34 E-value=0.087 Score=49.41 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~ 99 (332)
.++|+|+|- |.+|+.+|..+..-|. +|+.+|..... .. .. .. ..++++.++.||+|++.....
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~--~~-~~---~~~l~ell~~aDiv~~~lp~t 184 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG--IS-SI---YMEPEDIMKKSDFVLISLPLT 184 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC--cc-cc---cCCHHHHHhhCCEEEECCCCC
Confidence 478999999 9999999987765566 99999975311 00 00 11 125789999999999984211
Q ss_pred CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCchH
Q 019993 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTV 144 (332)
Q Consensus 100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~t 144 (332)
+. +-.++. .+.+....|++++|+++ .++|.-.
T Consensus 185 --~~---------T~~li~--~~~l~~mk~ga~lIN~sRG~~vd~~a 218 (303)
T PRK06436 185 --DE---------TRGMIN--SKMLSLFRKGLAIINVARADVVDKND 218 (303)
T ss_pred --ch---------hhcCcC--HHHHhcCCCCeEEEECCCccccCHHH
Confidence 11 111110 23333335788999985 6666553
No 495
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.34 E-value=0.18 Score=41.97 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=71.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeC-CCCH----------Hhhc
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL 86 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~-~~d~----------~~a~ 86 (332)
.+.|+||+|.+|..++..|+..|. ..|++++.++ ......++.... ..+..+.. .++. .+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 589999999999999999998843 2788998872 223333444322 33333221 1121 1234
Q ss_pred CCCcEEEEcCCCCCCCCCC------hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 87 TGMDLVIIPAGVPRKPGMT------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 87 ~~aDiVi~~~g~~~~~g~~------r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
...|++|.++|........ ....+..|+.....+.+.+.. .+.+.|+++|...
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~ 137 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA 137 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence 6899999999876522111 123456676666667777766 4577777776544
No 496
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.34 E-value=0.34 Score=46.02 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=58.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC-CcEEEEcCCC
Q 019993 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIPAGV 98 (332)
Q Consensus 21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-aDiVi~~~g~ 98 (332)
.+|+|+|+ |-+|...++.++..+. +|+.+|+++. ...+.+|.-. .-+.. . ..|.-+++++ +|+|+.|++
T Consensus 168 ~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd---~~i~~-~-~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 168 KWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGAD---HVINS-S-DSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCc---EEEEc-C-CchhhHHhHhhCcEEEECCC-
Confidence 59999999 8888777777776775 9999999873 3344444211 11121 1 1233344443 999999975
Q ss_pred CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 019993 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (332)
Q Consensus 99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~ 140 (332)
+ .-+....+. ..+++.++.+.+|.
T Consensus 239 ~---------------~~~~~~l~~---l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 P---------------ATLEPSLKA---LRRGGTLVLVGLPG 262 (339)
T ss_pred h---------------hhHHHHHHH---HhcCCEEEEECCCC
Confidence 3 112233333 34788999999984
No 497
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=95.30 E-value=0.35 Score=43.82 Aligned_cols=154 Identities=13% Similarity=0.169 Sum_probs=79.2
Q ss_pred CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCC---HH-------
Q 019993 20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQ---LE------- 83 (332)
Q Consensus 20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d---~~------- 83 (332)
.+.+.|+||+ +.+|..++..|+..|. +|++.+.+. ......++............ +-+| ..
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPC-DVQDDAQIEETFETIK 82 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEEecCcccchHHHHHHHHHhccCcceEeec-CcCCHHHHHHHHHHHH
Confidence 3578999985 5899999999999988 888876533 12222333222111100000 1112 11
Q ss_pred hhcCCCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 019993 84 NALTGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149 (332)
Q Consensus 84 ~a~~~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~ 149 (332)
+.+...|++|..+|.... + ..+. ...+..|+.. .+.+.+.+.+ .+.|++++......
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~---~g~Iv~isS~~~~~------ 153 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE---GGSIVTLTYLGGVR------ 153 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh---CCeEEEEecccccc------
Confidence 223468999999986432 1 1122 2223344433 4444454442 46677766433211
Q ss_pred HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 019993 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (332)
Q Consensus 150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~ 193 (332)
+.|..-.++.+......+.+.++..++ +..|++..+
T Consensus 154 ------~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~i 189 (258)
T PRK07370 154 ------AIPNYNVMGVAKAALEASVRYLAAELG--PKNIRVNAI 189 (258)
T ss_pred ------CCcccchhhHHHHHHHHHHHHHHHHhC--cCCeEEEEE
Confidence 123223345544334456677777775 455554443
No 498
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.30 E-value=0.27 Score=43.68 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC
Q 019993 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN 56 (332)
Q Consensus 22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~ 56 (332)
.+.|+||+|++|+.++..|++.|. +|++. +.+.
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~~ 36 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGY--TVAVNYQQNL 36 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCh
Confidence 689999999999999999999887 77664 4443
No 499
>PRK06046 alanine dehydrogenase; Validated
Probab=95.29 E-value=0.11 Score=49.20 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
..+|+|||+ |..|...+..+.....+.++.++|++. ....+.++.+. ....+... .+++++++ +|+|+++-
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT 201 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence 368999999 999999888777555567999999987 23333444332 12234432 36778886 99999973
No 500
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.28 E-value=0.099 Score=48.54 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 019993 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (332)
Q Consensus 19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~ 96 (332)
+.++++|+|| |..+.++++.|+..|. .+|.++|++.. +..+.++........+... ...++.+.+.++|+||.+-
T Consensus 126 ~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~~~divINaT 202 (283)
T PRK14027 126 KLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNAT 202 (283)
T ss_pred CCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEec-CHhHHHHHHhhcCEEEEcC
Confidence 3468999999 9999999999988775 38999998763 3333333221111112211 1112234567899999984
Done!