BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019994
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 4   IHQALCYKRANFWPHVPTKVTQNGVKRHVGFMYHSLVEDYFTGFKQLHCKGWRSVYLNPE 63
           IH+ L      F+      + +  +    GF   ++ ED  T   ++H +GW+S+Y++  
Sbjct: 305 IHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAGETITEDAETAL-EIHSRGWKSLYID-- 361

Query: 64  RPQFLGTSTTNLNDSLVQGTRWSSGLVQVAISKYCPLIYG---PPRMSLLESMAYADLGM 120
           R    G         + Q  RW++G++Q+ + K      G     R+  L SM++     
Sbjct: 362 RAMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGLGIAQRLCYLNSMSF---WF 418

Query: 121 FPLLNCLPLWCFATVPQLCLLHGIPLY 147
           FPL+  +    F   P + L  GI ++
Sbjct: 419 FPLVRMM----FLVAPLIYLFFGIEIF 441


>pdb|1QWT|A Chain A, Auto-inhibitory Interferon Regulation Factor-3 (irf3)
           Transactivation Domain
 pdb|1QWT|B Chain B, Auto-inhibitory Interferon Regulation Factor-3 (irf3)
           Transactivation Domain
          Length = 255

 Score = 30.8 bits (68), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 177 GGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGK 236
           GG + +WR  Q +W  R   C  Y +++  +    L  +      +V  D++  ++ +G 
Sbjct: 97  GGGLALWRAGQWLWAQRLGHCHTYWAVSEEL----LPNSGHGPDGEVPKDKEGGVFDLGP 152

Query: 237 F 237
           F
Sbjct: 153 F 153


>pdb|1J2F|A Chain A, X-Ray Crystal Structure Of Irf-3 And Its Functional
           Implications
 pdb|1J2F|B Chain B, X-Ray Crystal Structure Of Irf-3 And Its Functional
           Implications
          Length = 258

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 177 GGSIKIWRNEQRIWMIRAVTCQLYGSLNAIMHKLGLAEASFSATNKVADDEQVKLYGMGK 236
           GG + +WR  Q +W  R   C  Y +++  +    L  +      +V  D++  ++ +G 
Sbjct: 100 GGGLALWRAGQWLWAQRLGHCHTYWAVSEEL----LPNSGHGPDGEVPKDKEGGVFDLGP 155

Query: 237 F 237
           F
Sbjct: 156 F 156


>pdb|1ZOQ|A Chain A, Irf3-Cbp Complex
 pdb|1ZOQ|B Chain B, Irf3-Cbp Complex
          Length = 191

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 144 IPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSL 203
           +P +P  L           + +  +H+   L  GG + +WR  Q +W  R   C  Y ++
Sbjct: 43  LPGWPVTLPDPGMSLTDRGVMSYVRHVLSCL--GGGLALWRAGQWLWAQRLGHCHTYWAV 100

Query: 204 NAIMHKLGLAEASFSATNKVADDEQVKLYGMGKF 237
           +  +    L  +      +V  D++  ++ +G F
Sbjct: 101 SEEL----LPNSGHGPDGEVPKDKEGGVFDLGPF 130


>pdb|3A77|A Chain A, The Crystal Structure Of Phosphorylated Irf-3
 pdb|3A77|B Chain B, The Crystal Structure Of Phosphorylated Irf-3
 pdb|3A77|C Chain C, The Crystal Structure Of Phosphorylated Irf-3
 pdb|3A77|D Chain D, The Crystal Structure Of Phosphorylated Irf-3
          Length = 242

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 144 IPLYPEVLSSSSPIFVFVFLSALSKHLYEVLSTGGSIKIWRNEQRIWMIRAVTCQLYGSL 203
           +P +P  L           + +  +H+   L  GG + +WR  Q +W  R   C  Y ++
Sbjct: 53  LPGWPVTLPDPGMSLTDRGVMSYVRHVLSCL--GGGLALWRAGQWLWAQRLGHCHTYWAV 110

Query: 204 NAIMHKLGLAEASFSATNKVADDEQVKLYGMGKF 237
           +  +    L  +      +V  D++  ++ +G F
Sbjct: 111 SEEL----LPNSGHGPDGEVPKDKEGGVFDLGPF 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,343,846
Number of Sequences: 62578
Number of extensions: 365079
Number of successful extensions: 617
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 5
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)