Query 019994
Match_columns 332
No_of_seqs 169 out of 722
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 10:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019994.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019994hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 75.0 0.56 4.1E-05 40.7 2.1 38 23-62 204-245 (328)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.7 2.3E+02 0.017 23.0 7.6 24 303-326 47-70 (248)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 8.4 1.5E+02 0.011 16.9 2.8 15 127-141 9-23 (36)
4 d2b0ca1 c.108.1.2 (A:8-204) Pu 7.2 90 0.0065 22.4 1.9 22 36-62 165-186 (197)
5 d3bula2 c.23.6.1 (A:741-896) M 6.5 1.1E+02 0.008 23.1 2.1 29 46-81 27-55 (156)
6 d2cxaa1 d.108.1.6 (A:1-232) Le 6.5 1E+02 0.0076 25.2 2.1 41 12-55 84-128 (232)
7 d1o6ba_ c.26.1.3 (A:) Phosphop 5.5 83 0.006 22.7 0.8 16 69-84 143-158 (163)
8 d1x7fa2 c.1.8.12 (A:1-244) Out 5.2 2.1E+02 0.015 23.3 3.3 55 30-87 3-60 (244)
9 d2gnoa1 a.80.1.1 (A:209-306) g 5.2 86 0.0062 21.3 0.6 14 44-58 47-60 (98)
10 d1wjva2 g.37.1.2 (A:36-66) Cel 5.0 1.1E+02 0.0083 17.0 0.9 17 26-42 11-27 (31)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.97 E-value=0.56 Score=40.66 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=30.8
Q ss_pred ccccccccccc-cccCcc---hhhHHHhHHHHHHCCCeEEecCC
Q 019994 23 VTQNGVKRHVG-FMYHSL---VEDYFTGFKQLHCKGWRSVYLNP 62 (332)
Q Consensus 23 ~~~t~wg~eIG-~~~~si---TED~~Tg~~~Lh~~GwrsvY~~~ 62 (332)
+++..| ++|| |+++-. .||.+.++| +..+||+..|++.
T Consensus 204 irr~~f-~~vGgfDe~~~~~g~ED~Dl~~R-~~~~G~~i~~~p~ 245 (328)
T d1xhba2 204 IDRDYF-QEIGTYDAGMDIWGGENLEISFR-IWQCGGTLEIVTC 245 (328)
T ss_dssp EEHHHH-HHTTSCCTTSCTTCCCCSHHHHH-HHHTTCEEEEEEE
T ss_pred eeHHHH-HHhCCCCCCCcCcCchHHHHHHH-HHHhCCeEEEeCC
Confidence 355566 5788 988754 499999999 9999999999764
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.74 E-value=2.3e+02 Score=23.02 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=21.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHh
Q 019994 303 DNGRIPPSVTLSSALLSGIFLPLV 326 (332)
Q Consensus 303 ~k~~~P~~~~~~s~~~~~~~~~~~ 326 (332)
.|+..|...++..+++-++|.+++
T Consensus 47 s~r~~p~kyi~PG~~~l~~Fvi~P 70 (248)
T d2r6gf1 47 NRKAYAWRYVYPGMAGMGLFVLFP 70 (248)
T ss_dssp SSCCTTHHHHHHHHHHHHHHTHHH
T ss_pred ccCccceehhhhHHHHHHHHHHHh
Confidence 558999999999999999998887
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.41 E-value=1.5e+02 Score=16.86 Aligned_cols=15 Identities=27% Similarity=0.478 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019994 127 LPLWCFATVPQLCLL 141 (332)
Q Consensus 127 l~~l~y~l~P~l~ll 141 (332)
+....|+++|..+|+
T Consensus 9 iAt~LFilvPt~FLl 23 (36)
T d2axtm1 9 IATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666665554
No 4
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}
Probab=7.21 E-value=90 Score=22.35 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=14.3
Q ss_pred cCcchhhHHHhHHHHHHCCCeEEecCC
Q 019994 36 YHSLVEDYFTGFKQLHCKGWRSVYLNP 62 (332)
Q Consensus 36 ~~siTED~~Tg~~~Lh~~GwrsvY~~~ 62 (332)
.|+. +|+.++ ++.|++++.+++
T Consensus 165 gDs~-~di~~A----~~aG~~ti~v~~ 186 (197)
T d2b0ca1 165 DDNA-DNIEGA----NQLGITSILVKD 186 (197)
T ss_dssp ESCH-HHHHHH----HTTTCEEEECCS
T ss_pred eCCH-HHHHHH----HHcCCEEEEECC
Confidence 4443 455444 459999999864
No 5
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.53 E-value=1.1e+02 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=19.5
Q ss_pred hHHHHHHCCCeEEecCCCCCccccccCCChHHhhhh
Q 019994 46 GFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQ 81 (332)
Q Consensus 46 g~~~Lh~~GwrsvY~~~~~~af~GlaP~~l~~~l~Q 81 (332)
+.. |.++||+.+|+-. ...|+++.+..+|
T Consensus 27 ~~~-l~~~G~~Vi~LG~------~~p~e~~~~~~~~ 55 (156)
T d3bula2 27 GVV-LQCNNYEIVDLGV------MVPAEKILRTAKE 55 (156)
T ss_dssp HHH-HHTTTCEEEECCS------SBCHHHHHHHHHH
T ss_pred HHH-HHHCCCEEEECCC------CCCHHHHHHHHHh
Confidence 345 7889999999753 3456666665544
No 6
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=6.48 E-value=1e+02 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=25.7
Q ss_pred cccccCCCccccccc---ccc-cccccccCcchhhHHHhHHHHHHCCC
Q 019994 12 RANFWPHVPTKVTQN---GVK-RHVGFMYHSLVEDYFTGFKQLHCKGW 55 (332)
Q Consensus 12 ~~~~~~~~~~~~~~t---~wg-~eIG~~~~siTED~~Tg~~~Lh~~Gw 55 (332)
+.+|-..+.++|.+. |-. ++=| .=|+||+..++.+||..||
T Consensus 84 ~~~f~itin~~F~~VI~~Ca~~~~~~---tWI~~~ii~aY~~Lh~~G~ 128 (232)
T d2cxaa1 84 RSPYRVTMNYAFGQVIEGCASDREEG---TWITRGVVEAYHRLHELGH 128 (232)
T ss_dssp TCCCEEEESSCHHHHHHHHHTC---C---TTCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEECchHHHHHHhcCCCCCCC---cchhHHHHHHHHHHHhCCe
Confidence 445666666666443 211 1113 2368999999988999999
No 7
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=5.54 E-value=83 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=13.9
Q ss_pred cccCCChHHhhhhhhh
Q 019994 69 GTSTTNLNDSLVQGTR 84 (332)
Q Consensus 69 GlaP~~l~~~l~Qr~R 84 (332)
++.|+.+.+|++|+.|
T Consensus 143 ~lVP~~V~~yI~e~~~ 158 (163)
T d1o6ba_ 143 EFVPPEVELALQQKFR 158 (163)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHh
Confidence 7899999999998765
No 8
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=5.22 E-value=2.1e+02 Score=23.29 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=29.8
Q ss_pred cccc---cccCcchhhHHHhHHHHHHCCCeEEecCCCCCccccccCCChHHhhhhhhhhhh
Q 019994 30 RHVG---FMYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQGTRWSS 87 (332)
Q Consensus 30 ~eIG---~~~~siTED~~Tg~~~Lh~~GwrsvY~~~~~~af~GlaP~~l~~~l~Qr~RWa~ 87 (332)
+++| ++..+..|+...=+++++..|++-+|..--.+ ...+++..+.+++-.++|+
T Consensus 3 ~~LGiSvY~~~~~~e~~~~yi~~a~~~Gf~~iFTSL~~~---e~~~~~~~~~~~~l~~~a~ 60 (244)
T d1x7fa2 3 RKLGISLYPEHSTKEKDMAYISAAARHGFSRIFTCLLSV---NRPKEEIVAEFKEIINHAK 60 (244)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHTTTEEEEEEEECCC-----------HHHHHHHHHHH
T ss_pred ceeEEEEccCCCCHHHHHHHHHHHHHCCCCEEEecCccC---CCCHHHHHHHHHHHHHHHH
Confidence 3566 45556666666566658899999999632122 2356666666666555554
No 9
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=5.18 E-value=86 Score=21.35 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=10.9
Q ss_pred HHhHHHHHHCCCeEE
Q 019994 44 FTGFKQLHCKGWRSV 58 (332)
Q Consensus 44 ~Tg~~~Lh~~Gwrsv 58 (332)
.|-+. ||++||.++
T Consensus 47 ~~rii-lhen~we~~ 60 (98)
T d2gnoa1 47 LTRII-LHENTWESV 60 (98)
T ss_dssp HHHHH-HHTSCCCSH
T ss_pred HHHHh-cccCcccch
Confidence 45677 899999875
No 10
>d1wjva2 g.37.1.2 (A:36-66) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.99 E-value=1.1e+02 Score=16.99 Aligned_cols=17 Identities=6% Similarity=-0.150 Sum_probs=11.5
Q ss_pred cccccccccccCcchhh
Q 019994 26 NGVKRHVGFMYHSLVED 42 (332)
Q Consensus 26 t~wg~eIG~~~~siTED 42 (332)
+-||+++=--+.+||||
T Consensus 11 ~F~~~~y~~Ht~CItE~ 27 (31)
T d1wjva2 11 DFWGDDYKSHVKCISEG 27 (31)
T ss_dssp EEEGGGTTTCCCCCSCT
T ss_pred ccCCccccccceeeCcc
Confidence 34566666667788886
Done!