Query 019995
Match_columns 332
No_of_seqs 115 out of 1303
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.9 5.8E-06 2E-10 67.8 3.8 67 81-153 34-102 (137)
2 3b5d_A Multidrug transporter E 97.9 1.2E-05 4.1E-10 63.3 4.5 67 81-153 34-102 (110)
3 2i68_A Protein EMRE; transmemb 97.5 0.00012 4E-09 59.9 5.8 61 257-317 40-107 (137)
4 3b5d_A Multidrug transporter E 97.3 0.00059 2E-08 53.5 7.4 61 257-317 40-107 (110)
5 2y9f_A LSL-150, hemolytic lect 9.1 1.1E+02 0.0036 24.3 1.0 13 315-327 86-98 (150)
6 3arc_L Photosystem II reaction 8.0 3.8E+02 0.013 16.0 2.9 25 3-27 10-34 (37)
7 2hac_A T-cell surface glycopro 6.5 3.4E+02 0.012 15.9 2.1 17 114-130 14-30 (33)
8 3arc_T Photosystem II reaction 6.3 3.5E+02 0.012 15.7 2.1 18 283-300 14-31 (32)
9 1sse_A AP-1 like transcription 4.1 3E+02 0.01 16.3 0.8 13 312-324 5-17 (35)
10 2llh_A Nucleophosmin; nucleola 5.6 2E+02 0.0068 20.2 0.0 10 310-319 48-57 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.92 E-value=5.8e-06 Score=67.75 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHH-HHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 81 ~~gl~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~ 153 (332)
+.+++. .+.++++..++++.+++.+..+ .++.|++++++++++++|++++.+ ++|+++.++|+.++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN 102 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 566666 8899999999999999999888 899999999999999999998764 999999999998875
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.85 E-value=1.2e-05 Score=63.32 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=59.7
Q ss_pred HHHHHH-HHHHHHHHHhhcccChhhHHHh-hhhhHHHHHHHHHHHHhhccccccccccchhhhhhheeccceeee
Q 019995 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 81 ~~gl~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~ila~l~~~E~l~~~~~~~~~k~iGi~l~~~Gv~ll~ 153 (332)
..+++. ...+.++..++++.|.+.+..+ ..+.|++++++++++++|+++.. |++|+.+.++|+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 455666 7889999999999999999888 79999999999999999999876 4999999999998765
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.52 E-value=0.00012 Score=59.90 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhccch---hhhh-hchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCC
Q 019995 257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSND 317 (332)
Q Consensus 257 t~i~~~l~~~~l~~~~---~s~~-~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~ 317 (332)
++++|.+|.+++++.| +.++ ..+.|++++++|++++||+++..+-. +++.||++.|..+++
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~~ 107 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS 107 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 7799999999999994 6566 89999999999999999999987665 588899999876543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.33 E-value=0.00059 Score=53.49 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhccch---hhhh-hchHHHHHHHHHHHHhCCccccchhh---hhhheeeeeeeccCC
Q 019995 257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRHCRRR---FLSWKVLLINFFSND 317 (332)
Q Consensus 257 t~i~~~l~~~~l~~~~---~s~~-~~l~Pv~a~il~~~~LgE~~~~~~~~---~~~~~~~~~~~~~~~ 317 (332)
.+++|.++.+++|+.| +.+. ..+.|+.++++|++++||+++..+-. +++-||++.|..+|+
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~~ 107 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS 107 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6689999999999995 5455 78999999999999999999987666 588999999887643
No 5
>2y9f_A LSL-150, hemolytic lectin LSLA; sugar binding protein; 1.47A {Laetiporus sulphureus} PDB: 2y9g_A*
Probab=9.10 E-value=1.1e+02 Score=24.29 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=10.1
Q ss_pred cCCccccccceee
Q 019995 315 SNDFRFNSNWFTY 327 (332)
Q Consensus 315 ~~~~~~~~~~~~~ 327 (332)
-.|-|+++|||+.
T Consensus 86 d~Dgky~dnwF~~ 98 (150)
T 2y9f_A 86 DGDGRYPDNWFKI 98 (150)
T ss_dssp SSSSCSGGGCBEE
T ss_pred CCCCccccccEEE
Confidence 3467899999985
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=8.03 E-value=3.8e+02 Score=15.96 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=13.8
Q ss_pred CcccccchhhHHHHHHHHHHHHHHH
Q 019995 3 VDMGSMRAALPSVGMVIVLLAQVSN 27 (332)
Q Consensus 3 ~~~~~~~~~~~~l~li~~~~iwg~~ 27 (332)
+|.+..|-+.+.+.....++++++.
T Consensus 10 VELNRTSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhh
Confidence 4444444455555555666666554
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.50 E-value=3.4e+02 Score=15.92 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhcccc
Q 019995 114 AFTFVLAIIFRLEKLNW 130 (332)
Q Consensus 114 v~~~ila~l~~~E~l~~ 130 (332)
+...++..++.+||+..
T Consensus 14 iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 14 IYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34456667888888864
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.25 E-value=3.5e+02 Score=15.75 Aligned_cols=18 Identities=6% Similarity=0.131 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCccccch
Q 019995 283 VQALGHCLLYCHGCRHCR 300 (332)
Q Consensus 283 ~a~il~~~~LgE~~~~~~ 300 (332)
.++++-.+++.|++....
T Consensus 14 lgiiFFAI~FRePPri~~ 31 (32)
T 3arc_T 14 IALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHTSCCCCCC-
T ss_pred HHHHHHhhhhcCCCCCCC
Confidence 355566677888887654
No 9
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=4.07 E-value=3e+02 Score=16.25 Aligned_cols=13 Identities=54% Similarity=1.114 Sum_probs=0.0
Q ss_pred eeccCCccccccc
Q 019995 312 NFFSNDFRFNSNW 324 (332)
Q Consensus 312 ~~~~~~~~~~~~~ 324 (332)
+.++|++.|++..
T Consensus 5 ~~~S~~~nF~~~F 17 (35)
T 1sse_A 5 NMFSNDFNFENQF 17 (35)
T ss_dssp SSCCCCGGGSSSC
T ss_pred cccccccChhhhH
No 10
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=5.60 E-value=2e+02 Score=20.21 Aligned_cols=10 Identities=50% Similarity=0.913 Sum_probs=0.0
Q ss_pred eeeeccCCcc
Q 019995 310 LINFFSNDFR 319 (332)
Q Consensus 310 ~~~~~~~~~~ 319 (332)
++|++||-||
T Consensus 48 F~NyvKn~F~ 57 (74)
T 2llh_A 48 FINYVKNCFR 57 (74)
Done!