Query 019995
Match_columns 332
No_of_seqs 115 out of 1303
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 10:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019995.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019995hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.6 1E+02 0.0075 15.5 2.7 18 182-199 2-19 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 6.4 2.2E+02 0.016 15.4 2.8 24 4-27 11-34 (37)
3 d2je8a2 b.1.4.1 (A:784-864) Be 3.8 1.9E+02 0.014 18.8 1.5 17 311-327 32-48 (81)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 3.4 1.1E+03 0.077 19.3 15.8 42 190-233 289-330 (383)
5 d1zs4a1 a.35.1.9 (A:4-81) Regu 3.1 1E+02 0.0075 20.0 -0.5 26 1-26 30-59 (78)
6 d1kcpa_ g.3.6.1 (A:) Conotoxin 2.3 2.5E+02 0.018 13.8 0.6 6 316-321 19-24 (27)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.0 6.5E+02 0.048 15.8 2.6 19 252-270 45-65 (75)
8 d1q90r_ f.23.12.1 (R:) ISP sub 1.9 7E+02 0.051 13.6 3.2 18 69-86 5-22 (39)
9 d1q1ha_ a.4.5.41 (A:) Transcri 1.9 3.1E+02 0.022 18.2 0.6 10 321-330 72-81 (88)
10 d1q90a3 f.23.23.1 (A:248-292) 1.7 8.1E+02 0.059 13.7 4.0 28 182-209 5-32 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.61 E-value=1e+02 Score=15.49 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019995 182 ILGGFFLAAEAFMNSAWF 199 (332)
Q Consensus 182 ~~G~~l~L~aa~~~A~~~ 199 (332)
.+|.++.-++.+.||.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357778888888888873
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.42 E-value=2.2e+02 Score=15.42 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=12.3
Q ss_pred cccccchhhHHHHHHHHHHHHHHH
Q 019995 4 DMGSMRAALPSVGMVIVLLAQVSN 27 (332)
Q Consensus 4 ~~~~~~~~~~~l~li~~~~iwg~~ 27 (332)
|.+..|-+.+.+.....++++++.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Confidence 344444444555555556666554
No 3
>d2je8a2 b.1.4.1 (A:784-864) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.83 E-value=1.9e+02 Score=18.76 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=11.8
Q ss_pred eeeccCCccccccceee
Q 019995 311 INFFSNDFRFNSNWFTY 327 (332)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ 327 (332)
+..-..+.||+.|||.-
T Consensus 32 l~~~~~~g~fSDN~FdL 48 (81)
T d2je8a2 32 IETPLQGARYSDNFFDL 48 (81)
T ss_dssp EECSSTTCEESCCSEEE
T ss_pred EEcCCcCceEecCeEEe
Confidence 33434567999999964
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.38 E-value=1.1e+03 Score=19.32 Aligned_cols=42 Identities=7% Similarity=-0.130 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 019995 190 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI 233 (332)
Q Consensus 190 ~aa~~~A~~~vl~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~ 233 (332)
.+.+|+-.+..+.+|. +.+|+.-........|..-.+...++
T Consensus 289 ~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 289 AGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHh
Confidence 3445554444443332 45567777677766555555555444
No 5
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=3.08 E-value=1e+02 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=16.6
Q ss_pred CCCcccccchhh----HHHHHHHHHHHHHH
Q 019995 1 MGVDMGSMRAAL----PSVGMVIVLLAQVS 26 (332)
Q Consensus 1 ~~~~~~~~~~~~----~~l~li~~~~iwg~ 26 (332)
||++-++-||++ +-..+.++.+=||.
T Consensus 30 mGv~esqiSRwK~~f~~q~smlLAvLE~GV 59 (78)
T d1zs4a1 30 VGVDKSQISRWKRDWIPKFSMLLAVLEWGV 59 (78)
T ss_dssp HTSCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred hCCCHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 677777777776 44556666665553
No 6
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=2.30 E-value=2.5e+02 Score=13.79 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=2.6
Q ss_pred CCcccc
Q 019995 316 NDFRFN 321 (332)
Q Consensus 316 ~~~~~~ 321 (332)
|-||||
T Consensus 19 kcnrfn 24 (27)
T d1kcpa_ 19 KCNRFN 24 (27)
T ss_dssp CBCTTS
T ss_pred Hhhhhh
Confidence 334444
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.98 E-value=6.5e+02 Score=15.79 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=11.7
Q ss_pred HHHHh--hHHHHHHHHHHhcc
Q 019995 252 VLYSV--SSYWHWVSSWLVHM 270 (332)
Q Consensus 252 l~~~g--t~i~~~l~~~~l~~ 270 (332)
++|.+ .+++|.+|.|+.++
T Consensus 45 ~l~v~PPfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 45 ILRVAPPFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCHHHHHHHHHHHHHHH
Confidence 34444 56777777777654
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.87 E-value=7e+02 Score=13.63 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 019995 69 PQLTFSILCSFFLLSVFG 86 (332)
Q Consensus 69 ~~~~~~~~~~~~~~gl~g 86 (332)
+...+|++..++..|...
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 344567777777777665
No 9
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=1.86 E-value=3.1e+02 Score=18.15 Aligned_cols=10 Identities=40% Similarity=1.086 Sum_probs=6.3
Q ss_pred cccceeeeee
Q 019995 321 NSNWFTYVLE 330 (332)
Q Consensus 321 ~~~~~~~~~~ 330 (332)
+++|++|--.
T Consensus 72 ~~gw~~Y~W~ 81 (88)
T d1q1ha_ 72 DSGWFIYYWK 81 (88)
T ss_dssp -CCCCEEEEE
T ss_pred CCCcEEEEEE
Confidence 4688888643
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.67 E-value=8.1e+02 Score=13.71 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019995 182 ILGGFFLAAEAFMNSAWFILQALILRKF 209 (332)
Q Consensus 182 ~~G~~l~L~aa~~~A~~~vl~~~~~~~~ 209 (332)
+.|.+..+.+.+.--...|+-||-.++.
T Consensus 5 v~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666667777767666554
Done!