Query 019996
Match_columns 332
No_of_seqs 106 out of 114
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:11:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 99.9 4.6E-26 1E-30 187.0 13.4 104 111-218 2-113 (113)
2 cd00781 ketosteroid_isomerase 99.1 1.5E-09 3.3E-14 86.0 10.1 108 113-227 5-120 (122)
3 TIGR02096 conserved hypothetic 99.1 3.9E-09 8.5E-14 84.0 12.4 96 128-225 18-122 (129)
4 PF12680 SnoaL_2: SnoaL-like d 98.9 3.8E-08 8.2E-13 72.8 10.4 85 128-218 15-102 (102)
5 PF07366 SnoaL: SnoaL-like pol 98.8 1.1E-07 2.4E-12 76.4 13.1 96 127-224 17-119 (126)
6 KOG4457 Uncharacterized conser 98.3 2E-06 4.4E-11 78.5 8.6 110 109-219 35-165 (202)
7 PF07858 LEH: Limonene-1,2-epo 97.5 0.00066 1.4E-08 58.4 9.1 91 129-225 23-117 (125)
8 TIGR02960 SigX5 RNA polymerase 97.2 0.0048 1E-07 57.5 12.0 126 89-225 156-316 (324)
9 PRK08241 RNA polymerase factor 97.1 0.0061 1.3E-07 57.5 11.0 125 89-224 167-325 (339)
10 cd00531 NTF2_like Nuclear tran 95.0 0.5 1.1E-05 35.3 10.3 102 114-223 2-124 (124)
11 COG4319 Ketosteroid isomerase 93.8 0.89 1.9E-05 40.4 10.6 94 111-210 10-116 (137)
12 PF13474 SnoaL_3: SnoaL-like d 93.7 1.4 3.1E-05 33.9 10.7 74 115-188 3-86 (121)
13 TIGR02246 conserved hypothetic 93.4 2.6 5.6E-05 33.1 11.7 76 111-186 4-90 (128)
14 COG5485 Predicted ester cyclas 77.4 7.6 0.00016 34.5 6.2 87 130-223 27-122 (131)
15 KOG2546 Abl interactor ABI-1, 70.3 2.8 6E-05 43.7 2.0 97 112-213 74-177 (483)
16 PF14534 DUF4440: Domain of un 67.6 48 0.001 24.6 8.6 74 128-209 19-99 (107)
17 PRK09636 RNA polymerase sigma 65.0 62 0.0013 30.4 9.7 74 89-163 129-235 (293)
18 COG3631 Ketosteroid isomerase- 61.6 1.1E+02 0.0024 26.6 10.3 108 113-227 6-126 (133)
19 PF13577 SnoaL_4: SnoaL-like d 56.6 93 0.002 24.2 10.7 78 111-188 7-95 (127)
20 PF02136 NTF2: Nuclear transpo 51.0 97 0.0021 24.4 7.3 73 113-188 2-86 (118)
21 PF12158 DUF3592: Protein of u 43.7 22 0.00047 29.2 2.7 19 266-285 95-113 (148)
22 cd00780 NTF2 Nuclear transport 36.5 1.5E+02 0.0032 24.1 6.4 48 109-156 2-52 (119)
23 PRK14659 acpS 4'-phosphopantet 36.1 11 0.00023 31.8 -0.3 58 241-320 55-114 (122)
24 TIGR03357 VI_zyme type VI secr 33.6 2.9E+02 0.0063 23.2 10.8 101 82-188 2-111 (133)
25 PF13547 GTA_TIM: GTA TIM-barr 29.9 41 0.00088 33.7 2.5 51 105-156 41-111 (299)
26 PF06764 DUF1223: Protein of u 29.7 41 0.0009 31.3 2.4 30 215-244 32-62 (202)
27 PF03284 PHZA_PHZB: Phenazine 26.4 5.3E+02 0.011 23.9 9.9 92 130-224 39-141 (162)
28 cd08363 FosB FosB, a fosfomyci 25.0 53 0.0011 26.7 2.0 46 96-144 62-107 (131)
29 TIGR02957 SigX4 RNA polymerase 24.1 3.2E+02 0.0069 25.7 7.2 71 89-160 122-225 (281)
30 TIGR02115 potass_kdpF K+-trans 22.3 77 0.0017 21.2 2.0 15 294-308 6-20 (26)
31 cd08345 Fosfomycin_RP Fosfomyc 20.5 75 0.0016 24.1 1.9 43 101-144 61-103 (113)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.94 E-value=4.6e-26 Score=187.05 Aligned_cols=104 Identities=27% Similarity=0.493 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhCCccccccccceEeeCCcccccchHHHHHHH----HHhh-hcCCCeEEEE---EecCCEEEEEEE
Q 019996 111 STARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRL----WATT-ALDNPSVEMV---MLSTSVLSIKWT 182 (332)
Q Consensus 111 ~tirqL~~Di~~lregnrt~sIYApDV~FKDPFNsFrGrerYkri~----~M~~-~L~nPrfem~---m~s~dti~irWt 182 (332)
+++++|.+|++.+++|++.++||++||+|+||+++|+|+++|++++ ++.. ++.+|++++. +..+++|++|||
T Consensus 2 ~~~~~Lr~D~~~~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~ 81 (113)
T PF10184_consen 2 DVIRTLREDLPRFFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWR 81 (113)
T ss_pred hHHHHHHHHHHHHhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEE
Confidence 5789999999999999999999999999999999999999999994 4444 5667998554 344559999999
Q ss_pred EeeeeCccccccCCceEEeeeeEEEEeCCCCcEEEE
Q 019996 183 LRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEH 218 (332)
Q Consensus 183 Lsg~lklPwA~~ggrl~I~G~Se~~LN~isGlVvsH 218 (332)
++|.+++|| +|++.++|.|+|++|+ +|+|++|
T Consensus 82 ~~g~~~l~w---~p~~~~~G~S~~~ln~-~g~I~~H 113 (113)
T PF10184_consen 82 LRGVPRLPW---RPRISFDGTSTYTLNS-DGLIYRH 113 (113)
T ss_pred EEEEeCCCc---CCcEEEEEEEEEEECC-CCcEEeC
Confidence 999999999 7799999999999999 9999999
No 2
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.05 E-value=1.5e-09 Score=86.02 Aligned_cols=108 Identities=14% Similarity=0.217 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHH-hCC--ccccccccceEeeCCccc--ccchHHHHHHH-HHhhhcCCCeE--EEEEecCCEEEEEEEEe
Q 019996 113 ARQLVRDILELR-EGN--RALGTFAVSVKYKDPTRS--FTGREKYKRRL-WATTALDNPSV--EMVMLSTSVLSIKWTLR 184 (332)
Q Consensus 113 irqL~~Di~~lr-egn--rt~sIYApDV~FKDPFNs--FrGrerYkri~-~M~~~L~nPrf--em~m~s~dti~irWtLs 184 (332)
++++++.+.++. +|| ...++|++|+.|.||... ++|++.+++.+ .+.......++ ......++.+-+.|+++
T Consensus 5 ~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (122)
T cd00781 5 MKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHGGEAAFAFRVE 84 (122)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecCCEEEEEEEEE
Confidence 344444454443 333 578999999999999654 99999999998 65555444443 22334567777799887
Q ss_pred eeeCccccccCCceEEeeeeEEEEeCCCCcEEEEeeeccCCCC
Q 019996 185 GKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSAS 227 (332)
Q Consensus 185 g~lklPwA~~ggrl~I~G~Se~~LN~isGlVvsHiDyWD~S~~ 227 (332)
.... ++.+.+.|.+-++||. +|||.++++|||....
T Consensus 85 ~~~~------g~~~~~~~~~v~~~~~-dGkI~~~~~y~d~~~~ 120 (122)
T cd00781 85 FEWE------GQPCVVRVIDVMRFDA-DGRIVSMRAYWGPVNL 120 (122)
T ss_pred EEeC------CceEEEEEEEEEEECC-CccChHHHHhcCcccc
Confidence 6533 5668899999999998 8999999999997643
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.05 E-value=3.9e-09 Score=83.97 Aligned_cols=96 Identities=20% Similarity=0.348 Sum_probs=77.4
Q ss_pred ccccccccceEeeCCcc--cccchHHHHHHH-HHhhhcCCCeEEEEE--ec-CCEEEEEEEEeeeeCcccc---ccCCce
Q 019996 128 RALGTFAVSVKYKDPTR--SFTGREKYKRRL-WATTALDNPSVEMVM--LS-TSVLSIKWTLRGKPKSIIA---NIGGDL 198 (332)
Q Consensus 128 rt~sIYApDV~FKDPFN--sFrGrerYkri~-~M~~~L~nPrfem~m--~s-~dti~irWtLsg~lklPwA---~~ggrl 198 (332)
...++|++|+.|.||.. ...|++.|++.+ .++..+.+.++++.. .. ++.+...|+++++.+-+|- +.|.++
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~~~g~~~g~~~~g~~~ 97 (129)
T TIGR02096 18 AVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGTYRTAFLGLPASGKTY 97 (129)
T ss_pred HHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeeeeccccCCCCCCCCEE
Confidence 58899999999999975 578899999998 888888888875543 23 3499999999998752221 125567
Q ss_pred EEeeeeEEEEeCCCCcEEEEeeeccCC
Q 019996 199 IVKVYSKFTLNQISGQVIEHEELWDLS 225 (332)
Q Consensus 199 ~I~G~Se~~LN~isGlVvsHiDyWD~S 225 (332)
.++|.+.++|+ +|||++|++|||..
T Consensus 98 ~~~~~~~~~~~--~gkI~~~~~y~D~~ 122 (129)
T TIGR02096 98 SIRGVTFFVFD--DGKIKRETTYYNLA 122 (129)
T ss_pred EeeeeEEEEEe--CCEEEEEEEEecHH
Confidence 89999999997 59999999999965
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.85 E-value=3.8e-08 Score=72.83 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=71.4
Q ss_pred ccccccccceEeeCCcccccchHHHHHHH-HHhhhcCCCeEEEE--EecCCEEEEEEEEeeeeCccccccCCceEEeeee
Q 019996 128 RALGTFAVSVKYKDPTRSFTGREKYKRRL-WATTALDNPSVEMV--MLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYS 204 (332)
Q Consensus 128 rt~sIYApDV~FKDPFNsFrGrerYkri~-~M~~~L~nPrfem~--m~s~dti~irWtLsg~lklPwA~~ggrl~I~G~S 204 (332)
...++|++|+.|.||+...+|++.|+..+ .+.....+.++++. ..+++.+.+.|+..++.+. .+..+.+.|.+
T Consensus 15 ~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~----~g~~~~~~~~~ 90 (102)
T PF12680_consen 15 AIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADGDRVVVEWTVTGTTPP----TGQPISFRGCS 90 (102)
T ss_dssp HHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEETT----TSCEEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcCCEEEEEEEEEEEEcC----CCCEEEEEEEE
Confidence 46789999999999988999999999998 77777777777553 4788999999999997442 25567899999
Q ss_pred EEEEeCCCCcEEEE
Q 019996 205 KFTLNQISGQVIEH 218 (332)
Q Consensus 205 e~~LN~isGlVvsH 218 (332)
.+++ . +|||++|
T Consensus 91 ~~~~-~-dgkI~~~ 102 (102)
T PF12680_consen 91 VFRF-E-DGKIVEH 102 (102)
T ss_dssp EEEE-E-TTEEEEE
T ss_pred EEEE-E-CCEEEEC
Confidence 9999 5 7999998
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=98.83 E-value=1.1e-07 Score=76.41 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=81.8
Q ss_pred CccccccccceEeeCCc-ccccchHHHHHHH-HHhhhcCCCeEEEE--EecCCEEEEEEEEeeeeCcccc---ccCCceE
Q 019996 127 NRALGTFAVSVKYKDPT-RSFTGREKYKRRL-WATTALDNPSVEMV--MLSTSVLSIKWTLRGKPKSIIA---NIGGDLI 199 (332)
Q Consensus 127 nrt~sIYApDV~FKDPF-NsFrGrerYkri~-~M~~~L~nPrfem~--m~s~dti~irWtLsg~lklPwA---~~ggrl~ 199 (332)
+....+|+||+.+.+|. ..-.|++.|+..+ .+...+.+.++++. ..+++.+.++|+++|+..-+|. +.|.++.
T Consensus 17 ~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~gd~v~~~~~~~Gth~g~~~g~~ptgk~v~ 96 (126)
T PF07366_consen 17 DALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEGDRVAVRWTFTGTHTGEFMGIPPTGKPVE 96 (126)
T ss_dssp CHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TTEEEE
T ss_pred HHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEEEEeecCCcCCcCCCCCEEE
Confidence 35889999999999987 7999999999998 88889999999553 4678999999999999885542 2233577
Q ss_pred EeeeeEEEEeCCCCcEEEEeeeccC
Q 019996 200 VKVYSKFTLNQISGQVIEHEELWDL 224 (332)
Q Consensus 200 I~G~Se~~LN~isGlVvsHiDyWD~ 224 (332)
+.|++.++++. |+|+++..+||.
T Consensus 97 ~~~~~~~~~~~--gkI~e~~~~~D~ 119 (126)
T PF07366_consen 97 FRGMSIFRFED--GKIVEEWVYFDE 119 (126)
T ss_dssp EEEEEEEEEET--TEEEEEEEEECH
T ss_pred EEEEEEEEEEC--CEEEEEEEEECH
Confidence 99999999998 999999999995
No 6
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2e-06 Score=78.47 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccccceEeeCCcccc--cchHHHHHHHHHhhhcCC---CeEEEEE------ecCCEE
Q 019996 109 VESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSF--TGREKYKRRLWATTALDN---PSVEMVM------LSTSVL 177 (332)
Q Consensus 109 VE~tirqL~~Di~~lregnrt~sIYApDV~FKDPFNsF--rGrerYkri~~M~~~L~n---Prfem~m------~s~dti 177 (332)
.|-+-..|-..+|.+|-...-|++|++||.|.|-.... +|++-|...|-|.++|+. +.+++.+ .++-++
T Consensus 35 L~~~yerLr~tlPklF~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~~Tv 114 (202)
T KOG4457|consen 35 LEHVYERLRETLPKLFRRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDEGTV 114 (202)
T ss_pred HHHHHHHHHHHhHHHHhhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCCceE
Confidence 34556778889999999999999999999999987655 688888877766665554 4445444 467899
Q ss_pred EEEEEEeeeeC--ccccccCC----ce---E-EeeeeEEEEeCCCCcEEEEe
Q 019996 178 SIKWTLRGKPK--SIIANIGG----DL---I-VKVYSKFTLNQISGQVIEHE 219 (332)
Q Consensus 178 ~irWtLsg~lk--lPwA~~gg----rl---~-I~G~Se~~LN~isGlVvsHi 219 (332)
.+|||+.|.+- ..|+.-.- ++ . .+|.|.+.+|. +|+|+.|+
T Consensus 115 r~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~-~GlI~kh~ 165 (202)
T KOG4457|consen 115 RCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDG-NGLIYKHT 165 (202)
T ss_pred EEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECC-CceEEeee
Confidence 99999998542 44522111 11 1 78999999999 99999996
No 7
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.51 E-value=0.00066 Score=58.39 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=59.6
Q ss_pred cccccccc-eEeeCCcccccchHHHHHHH-HHhhhcCCCeEEEEE-ecCCEEEEEEEEeeeeCccccccCC-ceEEeeee
Q 019996 129 ALGTFAVS-VKYKDPTRSFTGREKYKRRL-WATTALDNPSVEMVM-LSTSVLSIKWTLRGKPKSIIANIGG-DLIVKVYS 204 (332)
Q Consensus 129 t~sIYApD-V~FKDPFNsFrGrerYkri~-~M~~~L~nPrfem~m-~s~dti~irWtLsg~lklPwA~~gg-rl~I~G~S 204 (332)
...++++| ||..-|+-..+|+++.++.+ -|...+..-.++++. .+++.+.+.+|+--... +.|| ++.+..+-
T Consensus 23 ~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg~~VltER~D~l~~----~dG~~~~~~~V~G 98 (125)
T PF07858_consen 23 LASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADGDVVLTERTDVLRF----ADGPLRIQFPVCG 98 (125)
T ss_dssp HHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEETTEEEEEEEEEEEE----TTTTEEEEEEEEE
T ss_pred HHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecCCEEEEEeEeeeee----ecCCeEEEEEEEE
Confidence 45678999 99999999999999999998 443344444445543 44556667777765333 1122 23455555
Q ss_pred EEEEeCCCCcEEEEeeeccCC
Q 019996 205 KFTLNQISGQVIEHEELWDLS 225 (332)
Q Consensus 205 e~~LN~isGlVvsHiDyWD~S 225 (332)
.+++. +|+|+..+||||..
T Consensus 99 vfEv~--dGkI~~WRDYFD~~ 117 (125)
T PF07858_consen 99 VFEVR--DGKITLWRDYFDLA 117 (125)
T ss_dssp EEEEE--TTEEEEEEEE--HH
T ss_pred EEEEE--CCEEEEEeccCCHH
Confidence 55554 59999999999964
No 8
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.23 E-value=0.0048 Score=57.48 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=86.1
Q ss_pred hcCCCccccCCceeeecchhHHHH---------------------------HHHHHHHHHHH-HhCC--ccccccccceE
Q 019996 89 VDGMDFGELCNEFECISSPLVEST---------------------------ARQLVRDILEL-REGN--RALGTFAVSVK 138 (332)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE~t---------------------------irqL~~Di~~l-regn--rt~sIYApDV~ 138 (332)
++||+..|++...- +|-..|.+. .+++.+...+. .+|| .+.+++++||.
T Consensus 156 ~~g~s~~EIA~~lg-is~~tV~~~l~Rar~~Lr~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~ 234 (324)
T TIGR02960 156 VLGWRAAETAELLG-TSTASVNSALQRARATLDEVGPSARDDQLAQPPSPEEQDLLERYIAAFESYDLDALTALLHEDAI 234 (324)
T ss_pred HhCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHhcCCeE
Confidence 78999888876543 232333332 22333333333 4565 47889999999
Q ss_pred eeCCc--ccccchHHHHHHH-HH--hhhcCCCeEEEEEecCCEEEEEEEEeeeeCccccccCCceEEeeeeEEEEeCCCC
Q 019996 139 YKDPT--RSFTGREKYKRRL-WA--TTALDNPSVEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISG 213 (332)
Q Consensus 139 FKDPF--NsFrGrerYkri~-~M--~~~L~nPrfem~m~s~dti~irWtLsg~lklPwA~~ggrl~I~G~Se~~LN~isG 213 (332)
|.+|. ..++|++++...+ -+ ...+...++......++.+.+.|..... ++.+.+.|...+++ . +|
T Consensus 235 ~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~--------~~~~~~~~v~~~~~-~-dG 304 (324)
T TIGR02960 235 WEMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRLLPTIANGQPAAAMYMRRPD--------AERHTAFQLHVLEI-R-GG 304 (324)
T ss_pred EEcCCCCcceeCHHHHHHHHHHhcccccCCceeEEEeeecCCceEEEEEEcCC--------CCeeeeeEEEEEEE-c-CC
Confidence 99997 4499999999887 44 3344444554445778888887742221 44578899999999 5 89
Q ss_pred cEEEEeeeccCC
Q 019996 214 QVIEHEELWDLS 225 (332)
Q Consensus 214 lVvsHiDyWD~S 225 (332)
+|.+...|||-.
T Consensus 305 kI~~~~~~~~~~ 316 (324)
T TIGR02960 305 RITHVTAFLDGP 316 (324)
T ss_pred cEEEEEEEcCCH
Confidence 999999999965
No 9
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.06 E-value=0.0061 Score=57.51 Aligned_cols=125 Identities=12% Similarity=0.133 Sum_probs=82.0
Q ss_pred hcCCCccccCCceeeecchhHH--------------------------HHHHHHHHHHHHH-HhCC--ccccccccceEe
Q 019996 89 VDGMDFGELCNEFECISSPLVE--------------------------STARQLVRDILEL-REGN--RALGTFAVSVKY 139 (332)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE--------------------------~tirqL~~Di~~l-regn--rt~sIYApDV~F 139 (332)
++||+..|++...-+.- ..|. ...+++++....+ ..|| ...+++++||.+
T Consensus 167 ~~g~s~~EIA~~lgis~-~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~ 245 (339)
T PRK08241 167 VLGWSAAEVAELLDTSV-AAVNSALQRARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDATW 245 (339)
T ss_pred hhCCCHHHHHHHhCCCH-HHHHHHHHHHHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEE
Confidence 79999998886654321 1121 2223333343333 5566 478899999999
Q ss_pred eCCccc--ccchHHHHHHH-HHhhhc--CCCeEEEEEecCCEEEEEEEEeeeeCccccccCCceEEeeeeEEEEeCCCCc
Q 019996 140 KDPTRS--FTGREKYKRRL-WATTAL--DNPSVEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQ 214 (332)
Q Consensus 140 KDPFNs--FrGrerYkri~-~M~~~L--~nPrfem~m~s~dti~irWtLsg~lklPwA~~ggrl~I~G~Se~~LN~isGl 214 (332)
.+|-.. ++|+++++..+ .+.... ..-++......++.+.+.+.- + ..|+.+.+.|..-+++. +|+
T Consensus 246 ~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~----~----~~g~~~~~~~v~v~~v~--dGk 315 (339)
T PRK08241 246 SMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANGQPAFAQYMR----D----PDGGGHRPWALHVLELR--GGR 315 (339)
T ss_pred EcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCCCeEEEEEEE----c----CCCCeeecceEEEEEEe--CCE
Confidence 999877 99999999888 543332 223333334556666664421 1 11444678899999997 599
Q ss_pred EEEEeeeccC
Q 019996 215 VIEHEELWDL 224 (332)
Q Consensus 215 VvsHiDyWD~ 224 (332)
|.+-.+|||.
T Consensus 316 I~~~~~y~d~ 325 (339)
T PRK08241 316 IAHVTSFLDT 325 (339)
T ss_pred EEEEEEEcCh
Confidence 9999999996
No 10
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=95.03 E-value=0.5 Score=35.30 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHh-CC--ccccccccceEeeCCc-----ccccchHHHHHHH-HHhhhcCCCeE-------EEEEecC---
Q 019996 114 RQLVRDILELRE-GN--RALGTFAVSVKYKDPT-----RSFTGREKYKRRL-WATTALDNPSV-------EMVMLST--- 174 (332)
Q Consensus 114 rqL~~Di~~lre-gn--rt~sIYApDV~FKDPF-----NsFrGrerYkri~-~M~~~L~nPrf-------em~m~s~--- 174 (332)
++|...+.++.. ++ .+..+|++|++|..|. ..++|+++++..+ .+... .+.. ++...++
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~~~~~h~~~~~~~~~~~~~~~ 79 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFG--PSRTRHLVSNVDVQPGDDGEG 79 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCC--CCceEEEEEeEEEEeCCCCEE
Confidence 456666666654 33 4888999999999998 6889999999988 33221 1111 1122222
Q ss_pred CEEEEEEEEeeeeCccccccCCceEEeeeeEEEEeCC--CCcEEEEeeecc
Q 019996 175 SVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQI--SGQVIEHEELWD 223 (332)
Q Consensus 175 dti~irWtLsg~lklPwA~~ggrl~I~G~Se~~LN~i--sGlVvsHiDyWD 223 (332)
..+...|.+.+... +....+.|.-..++... .++|.+.+.+|+
T Consensus 80 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 80 VVVSVFGVLRTRGD------GEQDVFAGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEEEEccC------CceeEEEEEEEEEEEEeCCEEEEEEEEEecC
Confidence 45666777776642 11233444444444321 679999988886
No 11
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=93.82 E-value=0.89 Score=40.39 Aligned_cols=94 Identities=12% Similarity=0.132 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHH-HhCC--ccccccccceEeeCCc-ccccchHHHHHHH--HHhhhcCCCeEEE---E-EecCCEEEE-
Q 019996 111 STARQLVRDILEL-REGN--RALGTFAVSVKYKDPT-RSFTGREKYKRRL--WATTALDNPSVEM---V-MLSTSVLSI- 179 (332)
Q Consensus 111 ~tirqL~~Di~~l-regn--rt~sIYApDV~FKDPF-NsFrGrerYkri~--~M~~~L~nPrfem---~-m~s~dti~i- 179 (332)
..||.+..|-..+ |.+| ...+.|++|+.|=||. -.++|++.|++.+ ++..+-..+.|+. + ..++|+++.
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~ 89 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVT 89 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEE
Confidence 5666777764433 4554 5778899999999996 8999999999999 4455555666633 2 257777655
Q ss_pred -EEEEeeeeCccccccCCc-eEEeeeeEEEEeC
Q 019996 180 -KWTLRGKPKSIIANIGGD-LIVKVYSKFTLNQ 210 (332)
Q Consensus 180 -rWtLsg~lklPwA~~ggr-l~I~G~Se~~LN~ 210 (332)
.|.+.++-+ +|+ ....|.-++.|-.
T Consensus 90 ~~~~~~~~~~------dg~~~~~~~Rat~v~rK 116 (137)
T COG4319 90 ALLLLTGTKK------DGPPADLAGRATYVFRK 116 (137)
T ss_pred EeeeeeccCC------CCcchhheeeeEEEEEE
Confidence 577777633 444 3366777777764
No 12
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=93.75 E-value=1.4 Score=33.95 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=49.7
Q ss_pred HHHHHHHHH-HhCC--ccccccccceEeeCC--cccccchHHHHHHH-HHhhhcCCCeEEE----EEecCCEEEEEEEEe
Q 019996 115 QLVRDILEL-REGN--RALGTFAVSVKYKDP--TRSFTGREKYKRRL-WATTALDNPSVEM----VMLSTSVLSIKWTLR 184 (332)
Q Consensus 115 qL~~Di~~l-regn--rt~sIYApDV~FKDP--FNsFrGrerYkri~-~M~~~L~nPrfem----~m~s~dti~irWtLs 184 (332)
++.+++.+. .+|| .+.++|++|+.+-+| -..++|++.+++.+ ..+..+....++. .+..++.+.+.+.++
T Consensus 3 ~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~~~~~ 82 (121)
T PF13474_consen 3 ALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVTGEFR 82 (121)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEEEEEE
Confidence 333333333 5566 689999999999874 45778999999998 4445554444422 235788888888877
Q ss_pred eeeC
Q 019996 185 GKPK 188 (332)
Q Consensus 185 g~lk 188 (332)
...+
T Consensus 83 ~~~~ 86 (121)
T PF13474_consen 83 LRFR 86 (121)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 13
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=93.37 E-value=2.6 Score=33.05 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHH-HhCC--ccccccccceEeeC-CcccccchHHHHHHH-HHhhhcCCC---eE---EEEEecCCEEEE
Q 019996 111 STARQLVRDILEL-REGN--RALGTFAVSVKYKD-PTRSFTGREKYKRRL-WATTALDNP---SV---EMVMLSTSVLSI 179 (332)
Q Consensus 111 ~tirqL~~Di~~l-regn--rt~sIYApDV~FKD-PFNsFrGrerYkri~-~M~~~L~nP---rf---em~m~s~dti~i 179 (332)
+-|++|.....+. ..|| ...++|++|+.|.+ |-..++|++.++..+ ........+ ++ ++...+++.+..
T Consensus 4 ~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~ 83 (128)
T TIGR02246 4 RAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIV 83 (128)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEE
Confidence 3456666666665 3444 58999999999984 455789999999988 333333322 22 222234466665
Q ss_pred EEEEeee
Q 019996 180 KWTLRGK 186 (332)
Q Consensus 180 rWtLsg~ 186 (332)
.+.....
T Consensus 84 ~~~~~~~ 90 (128)
T TIGR02246 84 HAIQTIT 90 (128)
T ss_pred EEEEEEE
Confidence 5444443
No 14
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=77.43 E-value=7.6 Score=34.54 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=56.6
Q ss_pred ccccccceEeeCCcccccchHHHHHHH-HHhhhcCCCeEEEEE--ecCCEEEEEEEEeeeeC-----ccccccCCceEEe
Q 019996 130 LGTFAVSVKYKDPTRSFTGREKYKRRL-WATTALDNPSVEMVM--LSTSVLSIKWTLRGKPK-----SIIANIGGDLIVK 201 (332)
Q Consensus 130 ~sIYApDV~FKDPFNsFrGrerYkri~-~M~~~L~nPrfem~m--~s~dti~irWtLsg~lk-----lPwA~~ggrl~I~ 201 (332)
.+-+-+|+-+-.. .-.|++.|+.|+ -++..+.+-+|++.. ..++.+-++=+|.++++ +|-+ |-++.+
T Consensus 27 l~~fv~~~v~~ng--~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~~~vaarl~Fdctp~G~i~Gip~n--GkrV~F- 101 (131)
T COG5485 27 LGSFVDGNVMHNG--RLQGLSGYREMLVRDFSAIPDLSFEIERLVAEGDRVAARLTFDCTPSGEIMGIPPN--GKRVRF- 101 (131)
T ss_pred cccCCcCeeeeCC--ceechHHHHHHHHhhHhhCCCcceEEEEEeecCCceEEEEEEccCcCceEeccCCC--CcEEEe-
Confidence 3344444444332 457999999998 889999999996633 57789999999999877 2321 222332
Q ss_pred eeeEEEEeC-CCCcEEEEeeecc
Q 019996 202 VYSKFTLNQ-ISGQVIEHEELWD 223 (332)
Q Consensus 202 G~Se~~LN~-isGlVvsHiDyWD 223 (332)
|+..|.+ ++|+|++|.=.-|
T Consensus 102 --se~vfy~f~~~KI~~vwsv~D 122 (131)
T COG5485 102 --SENVFYEFENGKIVEVWSVID 122 (131)
T ss_pred --ehhhhhhhcCCeEEeeehhcc
Confidence 3434332 4689998754333
No 15
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=70.34 E-value=2.8 Score=43.67 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCccccccccceEeeCCcccccchHHHHHHHHHhhh-----cCCCeEEEEE--ecCCEEEEEEEEe
Q 019996 112 TARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTA-----LDNPSVEMVM--LSTSVLSIKWTLR 184 (332)
Q Consensus 112 tirqL~~Di~~lregnrt~sIYApDV~FKDPFNsFrGrerYkri~~M~~~-----L~nPrfem~m--~s~dti~irWtLs 184 (332)
++|-|.-.-..||.-.--..+|+.+|-|+++-+.++++..|+.+.-..++ ..++...++- .--+...++|.-+
T Consensus 74 ~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPid~~mLd~igH 153 (483)
T KOG2546|consen 74 ALRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPIDYSMLDDIGH 153 (483)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccccceeeecccc
Confidence 34444444444566666788999999999999999999999998733332 2222223322 3446899999999
Q ss_pred eeeCccccccCCceEEeeeeEEEEeCCCC
Q 019996 185 GKPKSIIANIGGDLIVKVYSKFTLNQISG 213 (332)
Q Consensus 185 g~lklPwA~~ggrl~I~G~Se~~LN~isG 213 (332)
|. +.+|.. .| ...|+++.+|+- +|
T Consensus 154 GI-r~~~~~-rg--~~~g~~t~~l~r-s~ 177 (483)
T KOG2546|consen 154 GI-RGSWET-RG--RFDGTSTGKLSR-SG 177 (483)
T ss_pred cc-cccccc-cc--CcCcccccccCC-CC
Confidence 97 777844 33 377889999988 65
No 16
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=67.58 E-value=48 Score=24.57 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=46.2
Q ss_pred ccccccccceEeeCCcccccchHHHHHHHHHhhhcCCCeE-----EEEEecCCE--EEEEEEEeeeeCccccccCCceEE
Q 019996 128 RALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSV-----EMVMLSTSV--LSIKWTLRGKPKSIIANIGGDLIV 200 (332)
Q Consensus 128 rt~sIYApDV~FKDPFNsFrGrerYkri~~M~~~L~nPrf-----em~m~s~dt--i~irWtLsg~lklPwA~~ggrl~I 200 (332)
...++|++|+.|-.|.-...|++.+.+.+.- .....+.+ +++.. ++. +..+|++.+... +..+.+
T Consensus 19 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~-~~~~~~~~~~~~~~v~~~-gd~a~~~~~~~~~~~~~------g~~~~~ 90 (107)
T PF14534_consen 19 ALASLYADDFVFVGPGGTILGKEAILAAFKS-GFARFSSIKFEDVEVRVL-GDTAVVRGRWTFTWRGD------GEPVTI 90 (107)
T ss_dssp HHHTTEEEEEEEEETTSEEEEHHHHHHHHHH-HCEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEETTT------TEEEEE
T ss_pred HHHhhhCCCEEEECCCCCEeCHHHHHHHHhh-ccCCCceEEEEEEEEEEE-CCEEEEEEEEEEEEecC------CceEEE
Confidence 5889999999999999988899988888721 12333444 22222 444 455566655322 334556
Q ss_pred eeeeEEEEe
Q 019996 201 KVYSKFTLN 209 (332)
Q Consensus 201 ~G~Se~~LN 209 (332)
+|..+..+=
T Consensus 91 ~~~~~~v~~ 99 (107)
T PF14534_consen 91 RGRFTSVWK 99 (107)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 666655553
No 17
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=65.00 E-value=62 Score=30.38 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=49.9
Q ss_pred hcCCCccccCCceeeecchhHHHHHH----HH-----------------HHHH-HHHHhCC--ccccccccceEee-CC-
Q 019996 89 VDGMDFGELCNEFECISSPLVESTAR----QL-----------------VRDI-LELREGN--RALGTFAVSVKYK-DP- 142 (332)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE~tir----qL-----------------~~Di-~~lregn--rt~sIYApDV~FK-DP- 142 (332)
++||++.|++...-|. -.+|.+.+. +| ++.. .++..|| .+.+++++||.|. |+
T Consensus 129 ~~g~s~~EIA~~lg~s-~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dgg 207 (293)
T PRK09636 129 VFGVPFDEIASTLGRS-PAACRQLASRARKHVRAARPRFPVSDEEGAELVEAFFAALASGDLDALVALLAPDVVLHADGG 207 (293)
T ss_pred HhCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCC
Confidence 7999999999887653 334444332 12 2222 2235667 6899999999998 65
Q ss_pred ------cccccchHHHHHHH-HHhhhcC
Q 019996 143 ------TRSFTGREKYKRRL-WATTALD 163 (332)
Q Consensus 143 ------FNsFrGrerYkri~-~M~~~L~ 163 (332)
...+.|+++..+.+ .+.+.+.
T Consensus 208 g~~~~~~~~~~G~~~v~~~l~~~~~~~~ 235 (293)
T PRK09636 208 GKVPTALRPIYGADKVARFFLGLARRYG 235 (293)
T ss_pred CccCCCCccccCHHHHHHHHHHHhhhcc
Confidence 35578999999888 6655443
No 18
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=61.61 E-value=1.1e+02 Score=26.62 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHHHHHHHHHH-HhCC--ccccccccceEeeCCc-----cccc-chHHHHHHHHHhh-hcCCCeE---EEEEecCCEEEE
Q 019996 113 ARQLVRDILEL-REGN--RALGTFAVSVKYKDPT-----RSFT-GREKYKRRLWATT-ALDNPSV---EMVMLSTSVLSI 179 (332)
Q Consensus 113 irqL~~Di~~l-regn--rt~sIYApDV~FKDPF-----NsFr-GrerYkri~~M~~-~L~nPrf---em~m~s~dti~i 179 (332)
-++++++..++ -.|+ .+.+++++|+.|.=|. -.++ |.+..+..+-+.. .+...++ .+....+..+-+
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~~~v 85 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPVGAV 85 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCceEEE
Confidence 34556665554 5565 4899999999987443 3455 4444445553333 3334444 223344555556
Q ss_pred EEEEeeeeCccccccCCceEEeeeeEEEEeCCCCcEEEEeeeccCCCC
Q 019996 180 KWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSAS 227 (332)
Q Consensus 180 rWtLsg~lklPwA~~ggrl~I~G~Se~~LN~isGlVvsHiDyWD~S~~ 227 (332)
-|+-....+ . |..+.=.-..-+++- +|+|++=+||||.-..
T Consensus 86 ~~~~~~~~~----~-G~~~~~~~~~v~~vr--dGrI~~~~~y~D~~~~ 126 (133)
T COG3631 86 FRTRGRVSR----T-GKPYENRYAFVIRVR--DGRITRYREYVDTLAL 126 (133)
T ss_pred EEecCcccc----c-CceeecceEEEEEEe--CCEEEEEEEEechHhH
Confidence 776654433 1 332222222233333 6999999999997543
No 19
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=56.59 E-value=93 Score=24.21 Aligned_cols=78 Identities=10% Similarity=0.167 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhCC---ccccccccceEeeCCc---ccccchHHHHHHH-HHhhhcC-CCeE---EEEEecCCEEEE
Q 019996 111 STARQLVRDILELREGN---RALGTFAVSVKYKDPT---RSFTGREKYKRRL-WATTALD-NPSV---EMVMLSTSVLSI 179 (332)
Q Consensus 111 ~tirqL~~Di~~lregn---rt~sIYApDV~FKDPF---NsFrGrerYkri~-~M~~~L~-nPrf---em~m~s~dti~i 179 (332)
+-|++|......+...+ ...++|++|+.|.=|- ..++|++.+++.+ ....... ...+ .....+++++..
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~ 86 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATV 86 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEE
Confidence 44566666666554333 5889999999997774 5899999999998 3322111 1111 111247889999
Q ss_pred EEEEeeeeC
Q 019996 180 KWTLRGKPK 188 (332)
Q Consensus 180 rWtLsg~lk 188 (332)
+|.+.....
T Consensus 87 ~~~~~~~~~ 95 (127)
T PF13577_consen 87 RSYVLATHR 95 (127)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999987643
No 20
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=51.00 E-value=97 Score=24.42 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhC-C--ccccccccceEeeCCccc--ccchHHHHHHHHHhhhcCCC--eEEE--EE-e--cCCEEEEE
Q 019996 113 ARQLVRDILELREG-N--RALGTFAVSVKYKDPTRS--FTGREKYKRRLWATTALDNP--SVEM--VM-L--STSVLSIK 180 (332)
Q Consensus 113 irqL~~Di~~lreg-n--rt~sIYApDV~FKDPFNs--FrGrerYkri~~M~~~L~nP--rfem--~m-~--s~dti~ir 180 (332)
+++..+.+-+++.+ + .+..+|++|.-+-++.-+ ++|++.+.+.+ ..+... ++.+ .. + ......+-
T Consensus 2 ~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~---~~l~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 2 ANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFF---QSLPATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHH---HHHTTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHH---hcCCCcccEEEecccccccccccCCcEE
Confidence 44555555555555 4 388999888888888777 99999999998 333333 3322 22 2 22334456
Q ss_pred EEEeeeeC
Q 019996 181 WTLRGKPK 188 (332)
Q Consensus 181 WtLsg~lk 188 (332)
+.+.|..+
T Consensus 79 i~v~G~~~ 86 (118)
T PF02136_consen 79 ITVTGQFK 86 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEeEEE
Confidence 66666655
No 21
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=43.75 E-value=22 Score=29.20 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=16.5
Q ss_pred ccccccccCCCCCCcccccC
Q 019996 266 QENLGIYPDPSGDPTKVSSD 285 (332)
Q Consensus 266 ~e~~~iy~dP~~DP~kFfq~ 285 (332)
++..++|.||+ ||.+.+=.
T Consensus 95 G~~V~V~Y~P~-~P~~~~l~ 113 (148)
T PF12158_consen 95 GDTVTVYYNPN-NPEEARLE 113 (148)
T ss_pred cCEEEEEECCc-CCCeEEEe
Confidence 46789999999 99998766
No 22
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=36.50 E-value=1.5e+02 Score=24.08 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhCCc--cccccccceEeeCCc-ccccchHHHHHHH
Q 019996 109 VESTARQLVRDILELREGNR--ALGTFAVSVKYKDPT-RSFTGREKYKRRL 156 (332)
Q Consensus 109 VE~tirqL~~Di~~lregnr--t~sIYApDV~FKDPF-NsFrGrerYkri~ 156 (332)
.|++..+.++.+-+++.+++ +..+|.++..|-=+- +...|++.+...+
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l 52 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKL 52 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHH
Confidence 47888889999988888885 889999999999888 9999999999987
No 23
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=36.06 E-value=11 Score=31.78 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=36.1
Q ss_pred HHHHhhhccchHHHHHhhhhccccc--ccccccccCCCCCCcccccCCCCcccchHHHHHHHHHHHHHHHHHhhcccchh
Q 019996 241 LYATTEAGKDSFDLINNLKSKISTE--QENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHY 318 (332)
Q Consensus 241 ~~a~~e~~kd~~d~~~~~~~~l~~~--~e~~~iy~dP~~DP~kFfq~~d~~~~D~~~~~~vi~l~~~~v~~l~~~~~~~~ 318 (332)
.|+++||.- |-+...++.+ =.+.+|+.||+|-|.-.+...-. + --+.++|+|...|
T Consensus 55 rwaaKEA~~------KAlg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~~---~-------------~~i~vSiSh~~~y 112 (122)
T PRK14659 55 RFAAKEAYV------KALGTGFGRGIKMKDISVYNDLYGKPQITVSKSNI---D-------------HKIELSLSDDGDY 112 (122)
T ss_pred HHHHHHHHH------HHhccCcCcCccccEEEEEECCCCCeEEEECCccc---c-------------cEEEEEEEcCCCc
Confidence 388888753 2232223322 24568999999999877765421 1 2346888998887
Q ss_pred HH
Q 019996 319 EL 320 (332)
Q Consensus 319 ~~ 320 (332)
=+
T Consensus 113 a~ 114 (122)
T PRK14659 113 AI 114 (122)
T ss_pred EE
Confidence 43
No 24
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=33.63 E-value=2.9e+02 Score=23.22 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=50.9
Q ss_pred cchhhhhhcCCCccccCCceeeecchhHHHHHHHHHHHHHHHHhCCccccccccce---EeeC-CcccccchHHHHHHHH
Q 019996 82 KSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSV---KYKD-PTRSFTGREKYKRRLW 157 (332)
Q Consensus 82 ~s~~d~~vdg~~f~e~CdeF~C~SSp~VE~tirqL~~Di~~lregnrt~sIYApDV---~FKD-PFNsFrGrerYkri~~ 157 (332)
+|=+|+|.|.- ++.... ......+....+++||..|+....-.....+|. -|.| +++.-..+..+++.+-
T Consensus 2 ~sL~dRL~~~~--~~~~~~----~~~~~~~l~~sI~~~L~~LLnTr~g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~~I~ 75 (133)
T TIGR03357 2 PSLFERLPDAS--SESPST----RRSSAEQLRESIRRHLERLLNTRRGSCASLPDYGLPDLNDLSLSSADDRRRIRRAIE 75 (133)
T ss_pred cCHHHHhcccC--CCCCcc----ccCCHHHHHHHHHHHHHHHHccCCCccccccccCCcccccccccCHHHHHHHHHHHH
Confidence 34567776321 344442 233456777778888888865543322233332 2333 3333233334444441
Q ss_pred HhhhcCCCeE---EEEE--ecCCEEEEEEEEeeeeC
Q 019996 158 ATTALDNPSV---EMVM--LSTSVLSIKWTLRGKPK 188 (332)
Q Consensus 158 M~~~L~nPrf---em~m--~s~dti~irWtLsg~lk 188 (332)
-.=.-.+||+ ++.. .......+.+++.+.++
T Consensus 76 ~aI~r~EPRl~~~~V~~~~~~~~~~~l~f~I~~~l~ 111 (133)
T TIGR03357 76 QAIERYEPRLSSVRVTALEDEEDPLALRFRIEAELD 111 (133)
T ss_pred HHHHhcCCCcCceEEEEecCCCCccEEEEEEEEEEE
Confidence 1112346777 2222 23455678888888777
No 25
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=29.92 E-value=41 Score=33.65 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHHHHH--hCCcccc-------cc-----------ccceEeeCCcccccchHHHHHHH
Q 019996 105 SSPLVESTARQLVRDILELR--EGNRALG-------TF-----------AVSVKYKDPTRSFTGREKYKRRL 156 (332)
Q Consensus 105 SSp~VE~tirqL~~Di~~lr--egnrt~s-------IY-----------ApDV~FKDPFNsFrGrerYkri~ 156 (332)
+=|+|++ +++|+.|+..+. .+..+|+ -| -=|-...||-.+|-|+|.|--+-
T Consensus 41 ~fPaV~~-l~~LAa~VR~ilG~~~kitYAADWsEY~~~~p~dg~gd~~f~LDpLWa~~~IDfIGID~Y~PLS 111 (299)
T PF13547_consen 41 SFPAVEA-LRALAADVRAILGPGTKITYAADWSEYFGYQPADGSGDVYFHLDPLWADPNIDFIGIDNYFPLS 111 (299)
T ss_pred CCcHHHH-HHHHHHHHHHHhCCCceEEEeccCHHhcCcCCCCCCCcccccCcccccCCcCCEEEeecccccC
Confidence 4488886 679999999998 3333432 12 22346678889999999997653
No 26
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=29.74 E-value=41 Score=31.29 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEeeeccCCC-CcHHHHHHHhhhhHHHHH
Q 019996 215 VIEHEELWDLSA-SSPVARAFFWASRRLYAT 244 (332)
Q Consensus 215 VvsHiDyWD~S~-~dv~aQaf~~~sR~~~a~ 244 (332)
...|+||||-=+ .|++++.-|..--|+|+.
T Consensus 32 LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~ 62 (202)
T PF06764_consen 32 LAFHVDYWDYLGWKDPFASPEFTQRQRAYAR 62 (202)
T ss_dssp EEEE-STT-SSSS--TT--HHHHHHHHHHHH
T ss_pred EEecCCcccCCCCCCccCChhHHHHHHHHHH
Confidence 357999999865 689999988877788875
No 27
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=26.39 E-value=5.3e+02 Score=23.94 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=57.7
Q ss_pred ccccccceEeeCCc------ccccchHHHHHHH-HHhhhcCCCeE-EEEE---ecCCEEEEEEEEeeeeCccccccCCce
Q 019996 130 LGTFAVSVKYKDPT------RSFTGREKYKRRL-WATTALDNPSV-EMVM---LSTSVLSIKWTLRGKPKSIIANIGGDL 198 (332)
Q Consensus 130 ~sIYApDV~FKDPF------NsFrGrerYkri~-~M~~~L~nPrf-em~m---~s~dti~irWtLsg~lklPwA~~ggrl 198 (332)
..+|++|=.=.-+. .-++|+++.++.. |...-|.+-.. .++. ++++.+.++-+=+|+...|=-+ .|..
T Consensus 39 h~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i~fpGyp-eg~y 117 (162)
T PF03284_consen 39 HELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRGKILFPGYP-EGYY 117 (162)
T ss_dssp GGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE--TTS---EEE
T ss_pred heeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCccceecCCCC-cccc
Confidence 35555554433322 2489999999986 99999888777 3332 6789999999999988754100 1222
Q ss_pred EEeeeeEEEEeCCCCcEEEEeeeccC
Q 019996 199 IVKVYSKFTLNQISGQVIEHEELWDL 224 (332)
Q Consensus 199 ~I~G~Se~~LN~isGlVvsHiDyWD~ 224 (332)
.------++|+. |+|.+.+|+-|+
T Consensus 118 ~NHfiHsFel~n--GkI~~~REFmNp 141 (162)
T PF03284_consen 118 ENHFIHSFELEN--GKIKRNREFMNP 141 (162)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEE-H
T ss_pred eeeeEEEEEeeC--CEEEeehhhcCH
Confidence 222223355655 999999999873
No 28
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=25.03 E-value=53 Score=26.73 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=28.5
Q ss_pred ccCCceeeecchhHHHHHHHHHHHHHHHHhCCccccccccceEeeCCcc
Q 019996 96 ELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTR 144 (332)
Q Consensus 96 e~CdeF~C~SSp~VE~tirqL~~Di~~lregnrt~sIYApDV~FKDPFN 144 (332)
.+| |.+ +++.|+++.++|++.=.+..++-....-+...++|.||-.
T Consensus 62 hia--f~v-~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG 107 (131)
T cd08363 62 HIA--FTI-EDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDG 107 (131)
T ss_pred EEE--EEe-cHHHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCC
Confidence 455 555 3468999999998765443333221222445799999954
No 29
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=24.08 E-value=3.2e+02 Score=25.71 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=47.7
Q ss_pred hcCCCccccCCceeeecchhHHHHHHHHHHHHH----------------------HHHhCC--ccccccccceEee-C--
Q 019996 89 VDGMDFGELCNEFECISSPLVESTARQLVRDIL----------------------ELREGN--RALGTFAVSVKYK-D-- 141 (332)
Q Consensus 89 vdg~~f~e~CdeF~C~SSp~VE~tirqL~~Di~----------------------~lregn--rt~sIYApDV~FK-D-- 141 (332)
++|+++.|++...- +|-.+|.+.+..-.+-|. .+..|| .+.++.++||.|. |
T Consensus 122 ~~g~s~~EIA~~lg-~s~~tVr~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dgg 200 (281)
T TIGR02957 122 VFDYPYEEIASIVG-KSEANCRQLVSRARRHLDARRPRFEVSREESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGG 200 (281)
T ss_pred HcCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCC
Confidence 79999999999887 455566655432222111 224565 4778999999988 3
Q ss_pred ---Cc--ccccchHHHHHHH-HHhh
Q 019996 142 ---PT--RSFTGREKYKRRL-WATT 160 (332)
Q Consensus 142 ---PF--NsFrGrerYkri~-~M~~ 160 (332)
|. +-++|+++..+.+ .+.+
T Consensus 201 g~~~~~~~p~~G~~~v~~~~~~~~~ 225 (281)
T TIGR02957 201 GKVRAALRPIYGADRVARFFFGLVR 225 (281)
T ss_pred CcCCCCCcccccHHHHHHHHHHHhc
Confidence 22 3389999998887 4444
No 30
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.35 E-value=77 Score=21.20 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019996 294 CLTSNVIYIAFASVI 308 (332)
Q Consensus 294 ~~~~~vi~l~~~~v~ 308 (332)
+.+++++||+|++++
T Consensus 6 l~~~L~~YL~~aLl~ 20 (26)
T TIGR02115 6 LAVGLFIYLFYALLR 20 (26)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456777788777764
No 31
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.50 E-value=75 Score=24.12 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=25.4
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHhCCccccccccceEeeCCcc
Q 019996 101 FECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTR 144 (332)
Q Consensus 101 F~C~SSp~VE~tirqL~~Di~~lregnrt~sIYApDV~FKDPFN 144 (332)
|.+ +++.|++..++|.+-=............+...++|+||-.
T Consensus 61 f~v-~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG 103 (113)
T cd08345 61 FQI-QSEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDG 103 (113)
T ss_pred EEc-CHHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCC
Confidence 454 3368888888887643332222222233567889999953
Done!