Query 019997
Match_columns 332
No_of_seqs 274 out of 2408
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 2.2E-44 4.8E-49 357.8 25.3 201 4-212 93-296 (408)
2 PRK11573 hypothetical protein; 100.0 3.3E-44 7.1E-49 357.0 24.9 202 4-213 85-297 (413)
3 COG1253 TlyC Hemolysins and re 100.0 8.3E-42 1.8E-46 341.4 24.3 204 3-213 102-314 (429)
4 COG4536 CorB Putative Mg2+ and 100.0 2.7E-39 5.9E-44 309.7 18.5 203 4-212 96-309 (423)
5 PRK15094 magnesium/cobalt effl 100.0 1.7E-28 3.7E-33 234.2 18.5 153 51-212 20-174 (292)
6 COG4535 CorC Putative Mg2+ and 100.0 4.6E-28 1E-32 220.3 11.5 180 49-245 18-200 (293)
7 KOG2118 Predicted membrane pro 99.9 8.5E-23 1.9E-27 207.2 8.6 315 5-330 106-428 (498)
8 TIGR00400 mgtE Mg2+ transporte 99.7 1.6E-16 3.4E-21 160.2 16.6 134 65-208 89-233 (449)
9 COG2524 Predicted transcriptio 99.7 1E-16 2.2E-21 148.0 9.7 108 96-208 163-272 (294)
10 TIGR01302 IMP_dehydrog inosine 99.7 9.8E-16 2.1E-20 154.6 16.3 133 64-209 43-183 (450)
11 COG3448 CBS-domain-containing 99.7 2.1E-15 4.5E-20 141.8 16.6 136 65-208 202-353 (382)
12 COG4109 Predicted transcriptio 99.6 6.4E-15 1.4E-19 141.3 11.9 104 101-208 184-287 (432)
13 PRK05567 inosine 5'-monophosph 99.5 1.4E-13 3E-18 140.2 17.3 131 64-208 50-186 (486)
14 cd04603 CBS_pair_KefB_assoc Th 99.5 1.1E-13 2.3E-18 111.8 13.1 91 116-208 2-94 (111)
15 PRK10892 D-arabinose 5-phospha 99.5 8.5E-14 1.8E-18 134.3 12.2 104 103-208 200-307 (326)
16 cd04641 CBS_pair_28 The CBS do 99.5 2.7E-13 5.9E-18 110.6 12.5 91 116-208 2-103 (120)
17 cd04618 CBS_pair_5 The CBS dom 99.5 3.7E-13 7.9E-18 107.6 12.4 79 116-208 2-80 (98)
18 cd04630 CBS_pair_17 The CBS do 99.5 4.9E-13 1.1E-17 107.9 13.0 92 116-208 2-98 (114)
19 cd04605 CBS_pair_MET2_assoc Th 99.5 4.5E-13 9.8E-18 106.9 12.3 91 116-208 3-93 (110)
20 cd04619 CBS_pair_6 The CBS dom 99.5 4E-13 8.8E-18 108.8 12.1 91 116-208 2-97 (114)
21 cd04626 CBS_pair_13 The CBS do 99.5 4.6E-13 1E-17 107.2 11.6 91 116-208 2-95 (111)
22 cd04623 CBS_pair_10 The CBS do 99.5 6.9E-13 1.5E-17 105.8 12.4 91 116-208 2-97 (113)
23 cd04590 CBS_pair_CorC_HlyC_ass 99.5 6.2E-13 1.4E-17 106.3 11.3 91 116-208 2-94 (111)
24 COG2239 MgtE Mg/Co/Ni transpor 99.5 8.6E-13 1.9E-17 132.6 14.9 116 87-208 114-234 (451)
25 cd04600 CBS_pair_HPP_assoc Thi 99.5 7.8E-13 1.7E-17 107.8 11.9 91 116-208 3-107 (124)
26 PRK11543 gutQ D-arabinose 5-ph 99.5 3.4E-13 7.3E-18 129.6 11.4 103 104-208 196-301 (321)
27 COG3620 Predicted transcriptio 99.5 3.1E-13 6.6E-18 117.2 9.6 117 85-208 40-166 (187)
28 cd04631 CBS_pair_18 The CBS do 99.5 7.9E-13 1.7E-17 107.9 11.5 92 116-208 2-108 (125)
29 cd04642 CBS_pair_29 The CBS do 99.5 1E-12 2.3E-17 108.2 12.2 91 116-208 2-109 (126)
30 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.2E-12 2.7E-17 104.6 12.1 89 116-208 3-91 (108)
31 cd04627 CBS_pair_14 The CBS do 99.4 8.5E-13 1.8E-17 108.1 11.3 92 116-208 2-106 (123)
32 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.4E-12 2.9E-17 105.3 12.1 92 116-209 2-97 (115)
33 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 2E-12 4.3E-17 102.9 11.9 90 116-208 2-94 (111)
34 cd04803 CBS_pair_15 The CBS do 99.4 1.9E-12 4.1E-17 105.2 11.8 91 116-208 2-105 (122)
35 cd04643 CBS_pair_30 The CBS do 99.4 2.1E-12 4.6E-17 103.8 11.8 89 116-208 2-99 (116)
36 cd04639 CBS_pair_26 The CBS do 99.4 1.5E-12 3.3E-17 104.0 10.9 91 116-208 2-94 (111)
37 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 2.6E-12 5.6E-17 102.3 12.1 90 116-208 2-94 (111)
38 PRK07807 inosine 5-monophospha 99.4 1.6E-12 3.4E-17 132.1 13.5 100 103-208 87-186 (479)
39 cd04621 CBS_pair_8 The CBS dom 99.4 1.9E-12 4.1E-17 109.1 11.8 91 116-208 2-119 (135)
40 cd04588 CBS_pair_CAP-ED_DUF294 99.4 2.7E-12 5.8E-17 102.4 12.0 90 116-208 2-93 (110)
41 cd04624 CBS_pair_11 The CBS do 99.4 2.2E-12 4.9E-17 103.2 11.6 91 116-208 2-95 (112)
42 cd04617 CBS_pair_4 The CBS dom 99.4 1.9E-12 4.2E-17 105.4 11.2 92 116-209 2-99 (118)
43 cd04640 CBS_pair_27 The CBS do 99.4 1.9E-12 4.2E-17 106.7 11.3 91 116-208 2-108 (126)
44 cd04801 CBS_pair_M50_like This 99.4 1.3E-12 2.9E-17 105.2 10.0 91 116-208 2-97 (114)
45 cd04589 CBS_pair_CAP-ED_DUF294 99.4 3E-12 6.5E-17 102.5 12.0 90 116-208 2-95 (111)
46 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 2.6E-12 5.6E-17 102.6 11.6 91 116-208 2-96 (114)
47 PF01595 DUF21: Domain of unkn 99.4 6.4E-13 1.4E-17 117.3 8.4 86 3-92 93-183 (183)
48 cd04595 CBS_pair_DHH_polyA_Pol 99.4 3.4E-12 7.3E-17 102.0 11.9 90 116-208 3-94 (110)
49 cd04594 CBS_pair_EriC_assoc_ar 99.4 4.8E-12 1E-16 100.8 12.7 85 118-208 4-88 (104)
50 cd04599 CBS_pair_GGDEF_assoc2 99.4 3.9E-12 8.4E-17 100.5 12.0 88 116-208 2-89 (105)
51 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.2E-12 9.1E-17 100.8 12.1 90 116-208 3-92 (109)
52 cd04607 CBS_pair_NTP_transfera 99.4 4.3E-12 9.3E-17 102.1 12.0 90 117-208 4-96 (113)
53 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 6.4E-12 1.4E-16 99.6 12.6 88 116-208 2-89 (106)
54 cd04800 CBS_pair_CAP-ED_DUF294 99.4 5E-12 1.1E-16 101.0 12.0 90 116-208 2-95 (111)
55 cd04610 CBS_pair_ParBc_assoc T 99.4 6.2E-12 1.3E-16 99.6 12.5 88 116-208 3-90 (107)
56 cd04585 CBS_pair_ACT_assoc2 Th 99.4 4.7E-12 1E-16 102.1 11.8 90 116-208 2-105 (122)
57 cd04601 CBS_pair_IMPDH This cd 99.4 5.1E-12 1.1E-16 100.4 11.8 90 116-208 3-93 (110)
58 cd04636 CBS_pair_23 The CBS do 99.4 4E-12 8.7E-17 105.5 11.6 91 116-208 2-116 (132)
59 cd04635 CBS_pair_22 The CBS do 99.4 4.4E-12 9.5E-17 103.0 11.5 91 116-208 2-105 (122)
60 cd04632 CBS_pair_19 The CBS do 99.4 4.5E-12 9.7E-17 104.3 11.7 91 116-208 2-109 (128)
61 PLN02274 inosine-5'-monophosph 99.4 7.1E-12 1.5E-16 128.2 15.5 131 65-208 64-203 (505)
62 PRK01862 putative voltage-gate 99.4 3E-12 6.5E-17 132.8 12.8 103 102-208 444-550 (574)
63 cd04629 CBS_pair_16 The CBS do 99.4 3.7E-12 7.9E-17 102.1 10.4 91 116-208 2-98 (114)
64 cd04620 CBS_pair_7 The CBS dom 99.4 5.3E-12 1.1E-16 101.7 11.2 90 116-208 2-98 (115)
65 cd04614 CBS_pair_1 The CBS dom 99.4 9.9E-12 2.1E-16 98.5 12.3 78 116-208 2-79 (96)
66 cd04602 CBS_pair_IMPDH_2 This 99.4 6.9E-12 1.5E-16 101.3 11.5 91 116-208 3-97 (114)
67 cd04586 CBS_pair_BON_assoc Thi 99.4 4.4E-12 9.6E-17 105.7 10.7 91 116-208 3-119 (135)
68 cd04587 CBS_pair_CAP-ED_DUF294 99.4 6.3E-12 1.4E-16 100.6 11.1 90 116-208 2-96 (113)
69 cd04615 CBS_pair_2 The CBS dom 99.4 8.2E-12 1.8E-16 100.1 11.7 90 117-208 3-96 (113)
70 cd04606 CBS_pair_Mg_transporte 99.4 6.6E-12 1.4E-16 100.5 10.9 85 120-208 2-91 (109)
71 cd04802 CBS_pair_3 The CBS dom 99.4 1.2E-11 2.6E-16 98.9 12.2 90 116-208 2-96 (112)
72 cd04591 CBS_pair_EriC_assoc_eu 99.4 7.5E-12 1.6E-16 100.7 10.9 86 115-208 2-89 (105)
73 cd04608 CBS_pair_PALP_assoc Th 99.4 3.3E-12 7.1E-17 105.9 8.8 82 116-199 3-88 (124)
74 cd04637 CBS_pair_24 The CBS do 99.3 7.3E-12 1.6E-16 101.9 10.7 90 116-208 2-105 (122)
75 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 9.2E-12 2E-16 99.6 10.9 91 116-208 3-97 (114)
76 cd04638 CBS_pair_25 The CBS do 99.3 2.3E-11 4.9E-16 96.7 13.0 89 116-208 2-90 (106)
77 PRK07107 inosine 5-monophospha 99.3 6.7E-12 1.5E-16 128.2 12.1 111 90-208 87-201 (502)
78 TIGR01137 cysta_beta cystathio 99.3 8.7E-12 1.9E-16 125.4 12.8 105 96-208 328-436 (454)
79 cd04633 CBS_pair_20 The CBS do 99.3 1.3E-11 2.8E-16 100.1 11.3 90 116-208 2-105 (121)
80 cd04622 CBS_pair_9 The CBS dom 99.3 2.5E-11 5.3E-16 97.1 12.5 90 116-208 2-96 (113)
81 cd04625 CBS_pair_12 The CBS do 99.3 1.9E-11 4.1E-16 97.8 11.8 90 116-208 2-96 (112)
82 PTZ00314 inosine-5'-monophosph 99.3 1.9E-11 4.1E-16 124.9 14.0 132 65-209 60-200 (495)
83 cd04609 CBS_pair_PALP_assoc2 T 99.3 2.2E-11 4.7E-16 96.6 11.4 88 116-208 2-93 (110)
84 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.2E-11 4.7E-16 98.6 11.4 91 116-208 2-105 (121)
85 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.1E-11 6.8E-16 122.6 14.1 99 103-208 86-184 (475)
86 cd02205 CBS_pair The CBS domai 99.3 6.1E-11 1.3E-15 92.9 11.6 91 116-208 2-96 (113)
87 cd04598 CBS_pair_GGDEF_assoc T 99.3 3.3E-11 7.1E-16 97.4 10.3 90 116-208 2-102 (119)
88 cd04634 CBS_pair_21 The CBS do 99.3 4.9E-11 1.1E-15 101.0 11.4 90 116-208 2-127 (143)
89 COG0517 FOG: CBS domain [Gener 99.2 1.1E-10 2.4E-15 93.7 12.2 95 109-208 3-101 (117)
90 TIGR00393 kpsF KpsF/GutQ famil 99.2 3.7E-11 8.1E-16 112.3 10.6 101 105-208 155-258 (268)
91 COG2905 Predicted signal-trans 99.1 2E-10 4.4E-15 116.2 10.1 107 98-208 142-252 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 99.1 6.1E-10 1.3E-14 94.3 9.1 96 116-213 2-121 (133)
93 PRK14869 putative manganese-de 99.0 1.4E-09 3.1E-14 112.2 10.9 56 104-163 67-122 (546)
94 PF00571 CBS: CBS domain CBS d 98.7 4E-08 8.6E-13 70.2 6.4 37 172-208 1-37 (57)
95 PF00571 CBS: CBS domain CBS d 98.7 3.2E-08 6.9E-13 70.8 5.5 54 107-164 1-54 (57)
96 PRK10070 glycine betaine trans 98.6 8.1E-07 1.8E-11 88.8 13.3 100 105-208 274-374 (400)
97 KOG1764 5'-AMP-activated prote 98.5 6.1E-07 1.3E-11 89.1 11.4 91 116-208 238-340 (381)
98 KOG2550 IMP dehydrogenase/GMP 98.5 4.7E-07 1E-11 89.1 7.9 137 64-209 71-210 (503)
99 TIGR01186 proV glycine betaine 98.4 3.4E-06 7.3E-11 83.4 12.9 87 118-208 253-339 (363)
100 KOG0474 Cl- channel CLC-7 and 98.2 1.6E-06 3.5E-11 89.1 6.3 105 101-208 578-728 (762)
101 TIGR00400 mgtE Mg2+ transporte 98.0 3.5E-06 7.6E-11 85.3 3.7 99 103-207 193-291 (449)
102 cd04603 CBS_pair_KefB_assoc Th 98.0 1.6E-05 3.4E-10 63.8 6.3 56 104-163 55-110 (111)
103 cd04604 CBS_pair_KpsF_GutQ_ass 97.9 3.4E-05 7.5E-10 61.2 6.9 59 101-163 55-113 (114)
104 cd04617 CBS_pair_4 The CBS dom 97.9 2.9E-05 6.2E-10 62.9 6.3 61 102-163 55-117 (118)
105 cd04597 CBS_pair_DRTGG_assoc2 97.9 4.1E-05 8.8E-10 62.4 7.0 55 105-163 58-112 (113)
106 cd04801 CBS_pair_M50_like This 97.8 4.5E-05 9.9E-10 61.0 5.8 58 104-163 56-113 (114)
107 COG2524 Predicted transcriptio 97.8 3.8E-05 8.3E-10 71.9 5.9 39 170-208 172-210 (294)
108 PRK07107 inosine 5-monophospha 97.8 0.00012 2.5E-09 75.4 9.6 102 102-207 158-261 (502)
109 cd04619 CBS_pair_6 The CBS dom 97.8 6.2E-05 1.3E-09 60.5 6.1 57 103-163 57-113 (114)
110 PRK14869 putative manganese-de 97.7 5.2E-05 1.1E-09 78.5 6.8 103 103-208 244-375 (546)
111 cd04618 CBS_pair_5 The CBS dom 97.7 8.2E-05 1.8E-09 59.1 6.3 46 117-163 52-97 (98)
112 cd04597 CBS_pair_DRTGG_assoc2 97.7 9.8E-05 2.1E-09 60.2 6.0 39 170-208 58-96 (113)
113 cd04585 CBS_pair_ACT_assoc2 Th 97.6 0.00012 2.5E-09 58.6 6.0 58 102-163 64-121 (122)
114 cd04623 CBS_pair_10 The CBS do 97.6 0.00013 2.9E-09 57.6 6.3 55 104-163 58-112 (113)
115 cd04640 CBS_pair_27 The CBS do 97.6 7.2E-05 1.6E-09 61.3 4.9 60 103-163 62-125 (126)
116 cd04607 CBS_pair_NTP_transfera 97.6 0.00013 2.9E-09 58.1 6.2 56 104-163 57-112 (113)
117 cd04600 CBS_pair_HPP_assoc Thi 97.6 0.00013 2.8E-09 58.9 6.2 58 102-163 66-123 (124)
118 PRK07807 inosine 5-monophospha 97.6 0.00022 4.7E-09 73.1 8.8 95 105-208 148-246 (479)
119 cd04620 CBS_pair_7 The CBS dom 97.6 0.00019 4.1E-09 57.3 6.4 57 103-163 56-114 (115)
120 cd04582 CBS_pair_ABC_OpuCA_ass 97.6 0.00026 5.6E-09 55.6 7.1 54 106-163 52-105 (106)
121 cd04625 CBS_pair_12 The CBS do 97.6 0.00018 4E-09 57.0 6.2 55 104-163 57-111 (112)
122 cd04610 CBS_pair_ParBc_assoc T 97.6 0.00019 4.1E-09 56.3 6.2 56 104-163 51-106 (107)
123 cd04630 CBS_pair_17 The CBS do 97.6 0.00019 4.1E-09 57.4 6.3 56 103-163 58-113 (114)
124 cd04627 CBS_pair_14 The CBS do 97.6 0.00021 4.6E-09 58.0 6.6 52 107-162 70-121 (123)
125 cd04593 CBS_pair_EriC_assoc_ba 97.6 0.00023 5E-09 56.9 6.6 56 105-163 58-114 (115)
126 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00021 4.5E-09 56.6 6.2 57 103-163 51-107 (108)
127 cd04621 CBS_pair_8 The CBS dom 97.5 0.00022 4.8E-09 59.8 6.5 56 103-163 79-134 (135)
128 cd04613 CBS_pair_SpoIVFB_EriC_ 97.5 0.00021 4.6E-09 56.5 6.0 57 104-163 57-113 (114)
129 cd04615 CBS_pair_2 The CBS dom 97.5 0.00024 5.3E-09 56.4 6.3 57 103-163 56-112 (113)
130 cd04622 CBS_pair_9 The CBS dom 97.5 0.00025 5.3E-09 56.2 6.3 56 104-163 57-112 (113)
131 COG0517 FOG: CBS domain [Gener 97.5 0.00046 1E-08 54.9 7.9 54 106-162 63-117 (117)
132 cd04626 CBS_pair_13 The CBS do 97.5 0.00026 5.7E-09 56.1 6.3 55 104-163 56-110 (111)
133 cd04595 CBS_pair_DHH_polyA_Pol 97.5 0.00029 6.2E-09 55.8 6.5 56 103-163 54-109 (110)
134 cd04633 CBS_pair_20 The CBS do 97.5 0.00018 3.9E-09 57.9 5.4 57 102-163 64-120 (121)
135 cd04636 CBS_pair_23 The CBS do 97.5 0.00025 5.5E-09 58.4 6.1 55 104-163 77-131 (132)
136 cd04589 CBS_pair_CAP-ED_DUF294 97.5 0.00031 6.6E-09 55.7 6.4 56 103-163 55-110 (111)
137 TIGR01303 IMP_DH_rel_1 IMP deh 97.5 0.00052 1.1E-08 70.2 9.6 97 105-208 146-244 (475)
138 COG3448 CBS-domain-containing 97.5 0.00011 2.4E-09 70.2 4.2 40 169-208 244-283 (382)
139 KOG1764 5'-AMP-activated prote 97.5 0.00089 1.9E-08 66.7 10.8 121 88-209 133-268 (381)
140 cd04612 CBS_pair_SpoIVFB_EriC_ 97.5 0.00038 8.2E-09 54.8 6.7 55 105-163 56-110 (111)
141 cd04631 CBS_pair_18 The CBS do 97.5 0.00027 5.9E-09 57.1 6.0 57 103-163 68-124 (125)
142 cd04584 CBS_pair_ACT_assoc Thi 97.4 0.0003 6.6E-09 56.4 6.0 57 102-163 64-120 (121)
143 cd04599 CBS_pair_GGDEF_assoc2 97.4 0.00033 7.1E-09 54.8 6.0 55 104-163 50-104 (105)
144 cd04803 CBS_pair_15 The CBS do 97.4 0.00036 7.9E-09 56.1 6.4 58 102-163 64-121 (122)
145 PRK10892 D-arabinose 5-phospha 97.4 0.00025 5.4E-09 68.5 6.4 58 102-164 266-323 (326)
146 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00028 6.1E-09 55.9 5.7 55 105-163 58-112 (113)
147 cd04586 CBS_pair_BON_assoc Thi 97.4 0.00027 5.8E-09 58.5 5.7 57 102-163 78-134 (135)
148 PLN02274 inosine-5'-monophosph 97.4 0.00072 1.6E-08 69.7 9.7 102 103-206 161-266 (505)
149 cd04629 CBS_pair_16 The CBS do 97.4 0.0003 6.5E-09 55.8 5.6 56 103-163 58-113 (114)
150 cd04641 CBS_pair_28 The CBS do 97.4 0.00045 9.7E-09 55.9 6.6 52 108-163 68-119 (120)
151 cd04635 CBS_pair_22 The CBS do 97.4 0.00035 7.5E-09 56.3 5.9 57 103-163 65-121 (122)
152 PRK11543 gutQ D-arabinose 5-ph 97.4 0.0004 8.7E-09 66.8 7.2 58 103-164 261-318 (321)
153 cd04594 CBS_pair_EriC_assoc_ar 97.4 0.00052 1.1E-08 54.2 6.7 54 105-163 50-103 (104)
154 cd04800 CBS_pair_CAP-ED_DUF294 97.4 0.0004 8.7E-09 54.9 6.0 55 104-163 56-110 (111)
155 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.00048 1E-08 54.1 6.3 55 105-163 54-108 (109)
156 PRK05567 inosine 5'-monophosph 97.4 0.00097 2.1E-08 68.4 10.1 99 104-208 146-247 (486)
157 PTZ00314 inosine-5'-monophosph 97.4 0.001 2.2E-08 68.5 10.2 61 103-165 157-217 (495)
158 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00053 1.1E-08 54.0 6.4 57 103-163 54-110 (111)
159 cd04802 CBS_pair_3 The CBS dom 97.4 0.00048 1E-08 54.6 6.2 56 103-163 56-111 (112)
160 cd04606 CBS_pair_Mg_transporte 97.4 0.00047 1E-08 54.7 6.1 57 104-164 52-108 (109)
161 cd04601 CBS_pair_IMPDH This cd 97.4 0.00052 1.1E-08 54.0 6.3 56 104-163 53-109 (110)
162 cd04643 CBS_pair_30 The CBS do 97.3 0.00035 7.6E-09 55.6 5.2 55 103-163 61-115 (116)
163 cd04639 CBS_pair_26 The CBS do 97.3 0.00047 1E-08 54.5 5.8 55 105-163 56-110 (111)
164 cd04602 CBS_pair_IMPDH_2 This 97.3 0.00045 9.7E-09 55.3 5.7 57 105-163 57-113 (114)
165 KOG0475 Cl- channel CLC-3 and 97.3 0.0011 2.4E-08 68.8 9.5 101 107-208 545-677 (696)
166 smart00116 CBS Domain in cysta 97.3 0.00077 1.7E-08 44.2 5.8 30 179-208 1-30 (49)
167 cd04605 CBS_pair_MET2_assoc Th 97.3 0.001 2.2E-08 52.4 7.4 54 106-163 56-109 (110)
168 cd04632 CBS_pair_19 The CBS do 97.3 0.00055 1.2E-08 55.9 5.8 58 103-163 69-127 (128)
169 smart00116 CBS Domain in cysta 97.3 0.00074 1.6E-08 44.3 5.4 46 117-164 2-47 (49)
170 cd04614 CBS_pair_1 The CBS dom 97.2 0.00088 1.9E-08 52.7 6.2 45 117-163 51-95 (96)
171 cd04637 CBS_pair_24 The CBS do 97.2 0.0007 1.5E-08 54.5 5.8 55 105-163 67-121 (122)
172 cd04642 CBS_pair_29 The CBS do 97.2 0.00098 2.1E-08 54.4 6.7 51 109-163 75-125 (126)
173 cd04624 CBS_pair_11 The CBS do 97.2 0.0014 2.9E-08 51.9 7.2 56 104-163 56-111 (112)
174 COG3620 Predicted transcriptio 97.2 0.00056 1.2E-08 60.1 4.9 38 171-208 66-103 (187)
175 cd04592 CBS_pair_EriC_assoc_eu 97.1 0.0017 3.8E-08 54.7 7.4 30 179-208 2-31 (133)
176 cd04588 CBS_pair_CAP-ED_DUF294 97.1 0.0013 2.8E-08 51.9 6.2 55 105-163 55-109 (110)
177 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.0013 2.8E-08 52.0 5.9 54 105-163 57-110 (111)
178 cd04634 CBS_pair_21 The CBS do 97.0 0.0015 3.3E-08 54.9 6.0 56 103-163 87-142 (143)
179 cd04608 CBS_pair_PALP_assoc Th 97.0 0.0035 7.6E-08 51.6 7.8 31 178-208 2-32 (124)
180 cd04591 CBS_pair_EriC_assoc_eu 96.9 0.002 4.3E-08 51.4 5.9 49 110-163 56-104 (105)
181 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0033 7.1E-08 62.7 8.5 92 101-208 270-362 (382)
182 PRK01862 putative voltage-gate 96.9 0.0023 5E-08 66.8 7.3 58 104-164 511-569 (574)
183 TIGR01137 cysta_beta cystathio 96.9 0.0027 5.8E-08 64.1 7.4 39 170-208 335-373 (454)
184 cd04598 CBS_pair_GGDEF_assoc T 96.9 0.0021 4.6E-08 51.4 5.5 57 103-163 59-118 (119)
185 cd04638 CBS_pair_25 The CBS do 96.8 0.0031 6.7E-08 49.5 6.0 53 106-163 53-105 (106)
186 cd02205 CBS_pair The CBS domai 96.7 0.0069 1.5E-07 46.7 7.2 53 107-163 60-112 (113)
187 TIGR00393 kpsF KpsF/GutQ famil 96.7 0.0036 7.8E-08 58.4 6.4 39 170-208 155-194 (268)
188 COG2905 Predicted signal-trans 96.7 0.0035 7.6E-08 64.5 6.5 76 84-166 192-270 (610)
189 PRK15094 magnesium/cobalt effl 96.7 0.0047 1E-07 59.3 7.0 87 105-197 133-228 (292)
190 TIGR01302 IMP_dehydrog inosine 96.6 0.012 2.5E-07 60.0 10.1 60 103-165 141-200 (450)
191 cd04609 CBS_pair_PALP_assoc2 T 96.6 0.0042 9.2E-08 48.6 5.3 54 104-163 56-109 (110)
192 COG4175 ProV ABC-type proline/ 96.4 0.0077 1.7E-07 58.6 6.5 102 93-208 262-364 (386)
193 TIGR03520 GldE gliding motilit 96.3 0.016 3.6E-07 58.1 8.9 90 104-198 254-350 (408)
194 COG2239 MgtE Mg/Co/Ni transpor 95.6 0.015 3.3E-07 59.1 4.8 60 101-164 192-251 (451)
195 COG4109 Predicted transcriptio 95.1 0.036 7.8E-07 54.5 5.3 60 101-164 245-304 (432)
196 KOG2550 IMP dehydrogenase/GMP 94.6 0.097 2.1E-06 52.4 6.9 101 101-208 167-270 (503)
197 TIGR01186 proV glycine betaine 94.0 0.14 2.9E-06 50.9 6.8 56 105-165 302-357 (363)
198 PRK11573 hypothetical protein; 93.4 0.4 8.6E-06 48.4 9.0 79 116-197 263-350 (413)
199 PRK10070 glycine betaine trans 91.7 0.45 9.7E-06 47.9 6.7 57 104-165 336-392 (400)
200 KOG0476 Cl- channel CLC-2 and 91.1 0.64 1.4E-05 49.9 7.3 60 102-164 585-645 (931)
201 COG1253 TlyC Hemolysins and re 89.0 3.4 7.3E-05 41.8 10.5 101 93-199 259-369 (429)
202 COG4536 CorB Putative Mg2+ and 87.2 1.7 3.6E-05 43.4 6.6 62 100-163 260-321 (423)
203 COG1125 OpuBA ABC-type proline 80.3 5.8 0.00013 38.1 6.8 107 85-208 163-291 (309)
204 KOG0474 Cl- channel CLC-7 and 73.4 4.9 0.00011 42.6 4.7 53 108-164 693-745 (762)
205 TIGR03415 ABC_choXWV_ATP choli 73.3 5.6 0.00012 39.8 5.0 46 116-165 334-379 (382)
206 COG4535 CorC Putative Mg2+ and 69.1 25 0.00054 33.3 7.8 89 105-199 133-230 (293)
207 KOG0475 Cl- channel CLC-3 and 55.6 21 0.00046 38.0 5.3 54 107-165 641-694 (696)
208 COG1125 OpuBA ABC-type proline 49.6 30 0.00065 33.4 4.9 59 103-163 247-307 (309)
209 KOG0476 Cl- channel CLC-2 and 48.3 24 0.00051 38.5 4.4 40 169-208 587-626 (931)
210 COG2047 Uncharacterized protei 43.0 17 0.00036 34.0 2.1 61 262-322 95-156 (258)
211 COG2216 KdpB High-affinity K+ 41.8 36 0.00078 35.8 4.4 35 126-163 415-449 (681)
212 COG4175 ProV ABC-type proline/ 36.7 47 0.001 33.0 4.1 47 116-165 336-382 (386)
213 PF03563 Bunya_G2: Bunyavirus 35.8 74 0.0016 30.5 5.1 26 33-58 209-234 (285)
214 PRK09458 pspB phage shock prot 25.4 1.6E+02 0.0034 22.9 4.5 44 30-77 4-47 (75)
215 PF06667 PspB: Phage shock pro 24.3 2.7E+02 0.0058 21.5 5.7 43 31-77 5-47 (75)
216 COG0523 Putative GTPases (G3E 20.8 47 0.001 32.5 1.1 24 188-213 17-40 (323)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=2.2e-44 Score=357.77 Aligned_cols=201 Identities=26% Similarity=0.472 Sum_probs=179.2
Q ss_pred hhhhHhhhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hccCCccccCHHHHHHHHHhhcc
Q 019997 4 HALIAIHLCLQIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVALFRRAELKTLVNLHGN 80 (332)
Q Consensus 4 ~~t~lilifGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Pii~~l~~l~~~l---lg~~~~~~ls~eEL~~lv~~~~~ 80 (332)
..|+++++|||++||++|.+||+++++++++|+++++++|+|++|+++++++++ +|.+. ..+|++||+.+++.
T Consensus 93 ~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~~t~eEl~~lv~~--- 168 (408)
T TIGR03520 93 IVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SNISVDQLSQALEL--- 168 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHh---
Confidence 346789999999999999999999999999999999999999999999887765 45543 35899999999984
Q ss_pred ccccCCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhh
Q 019997 81 EAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKN 160 (332)
Q Consensus 81 e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rD 160 (332)
+.++| +.++|++|++|+|+|++++|+++||||.++++++.+++++ ++++.+.+++|||+|||+++.++++|+|+.+|
T Consensus 169 -~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kD 245 (408)
T TIGR03520 169 -TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKETIDNITGVLYIKD 245 (408)
T ss_pred -HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEcCCCCceEEEEEHHH
Confidence 33456 6899999999999999999999999999999999999998 99999999999999999977789999999999
Q ss_pred HhccCCccccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEcCCC
Q 019997 161 LLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 212 (332)
Q Consensus 161 Ll~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDEyG~ 212 (332)
++.....+..++.++ ++++.+||+++++.++++.|++++.|+|+|+||||+
T Consensus 246 ll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~ 296 (408)
T TIGR03520 246 LLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG 296 (408)
T ss_pred HHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence 986543333457787 678899999999999999999999999999997765
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=356.98 Aligned_cols=202 Identities=20% Similarity=0.375 Sum_probs=178.3
Q ss_pred hhhhHhhhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HhccCC----ccccCHHHHHHHHH
Q 019997 4 HALIAIHLCLQIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR----VALFRRAELKTLVN 76 (332)
Q Consensus 4 ~~t~lilifGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Pii~~l~~l~~~---llg~~~----~~~ls~eEL~~lv~ 76 (332)
..|+++++|||++||++|.+||+++++++++|+++++++|+|++|+++++++. +||.+. ...+|++||+.+++
T Consensus 85 i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~ 164 (413)
T PRK11573 85 VLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVH 164 (413)
T ss_pred HHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999877664 456543 24589999999998
Q ss_pred hhccccccCCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEE
Q 019997 77 LHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI 156 (332)
Q Consensus 77 ~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIV 156 (332)
.+ . +.++++|++|++|+|+|++++|+++||||.++++++.+.+++ ++++.+.+++|||+|||+++.|+++|+|
T Consensus 165 ~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~D~IiGiv 237 (413)
T PRK11573 165 ES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSLDDAISML 237 (413)
T ss_pred HH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCCCceEEEE
Confidence 43 2 259999999999999999999999999999999999999998 9999999999999999998789999999
Q ss_pred EhhhHhccCCc-cc---cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEcCCCC
Q 019997 157 LVKNLLTIHPE-DE---VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKN 213 (332)
Q Consensus 157 t~rDLl~~~~~-~~---~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDEyG~~ 213 (332)
|.||++..... .. ..+.++ ++|+.+||+++++.++|+.|++++.|+|+|+||||++
T Consensus 238 ~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~ 297 (413)
T PRK11573 238 RVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI 297 (413)
T ss_pred EHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe
Confidence 99999864322 11 223455 6899999999999999999999999999999998875
No 3
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=8.3e-42 Score=341.37 Aligned_cols=204 Identities=31% Similarity=0.558 Sum_probs=179.7
Q ss_pred chhhhHhhhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---ccC----CccccCHHHHHHHH
Q 019997 3 VHALIAIHLCLQIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHG----RVALFRRAELKTLV 75 (332)
Q Consensus 3 ~~~t~lilifGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Pii~~l~~l~~~ll---g~~----~~~~ls~eEL~~lv 75 (332)
+..|+++++|||++||++|+++|+++++++++++++++++|+|++|++++++++++ |.+ .....+.++++ ++
T Consensus 102 ~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~~ 180 (429)
T COG1253 102 AIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-LV 180 (429)
T ss_pred HHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH-HH
Confidence 35688999999999999999999999999999999999999999999999988765 433 22345677777 66
Q ss_pred HhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEE
Q 019997 76 NLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGL 155 (332)
Q Consensus 76 ~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGI 155 (332)
. ++.+.|.++++|++|++|+|+|++++|+++||||.++++++.+.++. ++.+.+.+++|||+|||+++.|+++|+
T Consensus 181 ~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV~~~~~D~iiGi 255 (429)
T COG1253 181 S----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDGDLDNIIGI 255 (429)
T ss_pred H----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeEEcCCCCcEEEE
Confidence 6 45678999999999999999999999999999999999999999998 999999999999999999788999999
Q ss_pred EEhhhHhccCCccc--cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEcCCCC
Q 019997 156 ILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKN 213 (332)
Q Consensus 156 Vt~rDLl~~~~~~~--~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDEyG~~ 213 (332)
+|.||++.....+. ...... .+++++||+++++.++|++|++.+.|+|+|+||||++
T Consensus 256 v~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~ 314 (429)
T COG1253 256 VHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGV 314 (429)
T ss_pred EEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCe
Confidence 99999998654432 222222 5699999999999999999999999999999998874
No 4
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-39 Score=309.65 Aligned_cols=203 Identities=28% Similarity=0.477 Sum_probs=181.2
Q ss_pred hhhhHhhhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HhccCC----ccccCHHHHHHHHH
Q 019997 4 HALIAIHLCLQIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR----VALFRRAELKTLVN 76 (332)
Q Consensus 4 ~~t~lilifGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Pii~~l~~l~~~---llg~~~----~~~ls~eEL~~lv~ 76 (332)
..|+++++|+|++||++|+.||++++...++++.++.++|+|++|+++.+++. +||... +...+.||++.++.
T Consensus 96 ~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~ 175 (423)
T COG4536 96 VLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVN 175 (423)
T ss_pred HHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999887765 567542 45689999999998
Q ss_pred hhccccccCCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEE
Q 019997 77 LHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI 156 (332)
Q Consensus 77 ~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIV 156 (332)
. ++++|.....+++|+.++++|++++|.|+|+||.++..++.|++.+ ++.+.+.++.|+|+|||.++.|+++|++
T Consensus 176 ~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRiplyr~~~DnIiGvl 250 (423)
T COG4536 176 E----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIPLYRDDLDNIIGVL 250 (423)
T ss_pred H----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCceeeecCChhHhhhhh
Confidence 4 5556777788999999999999999999999999999999999998 9999999999999999998889999999
Q ss_pred EhhhHhccCCccc----cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEcCCC
Q 019997 157 LVKNLLTIHPEDE----VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 212 (332)
Q Consensus 157 t~rDLl~~~~~~~----~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDEyG~ 212 (332)
|.||++++..+.+ ..+..+ ..+++|||+++++.+.|..|++++.|+++||||||+
T Consensus 251 h~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~ 309 (423)
T COG4536 251 HVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGD 309 (423)
T ss_pred hHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCc
Confidence 9999999765533 223333 588999999999999999999999999999998886
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=1.7e-28 Score=234.25 Aligned_cols=153 Identities=27% Similarity=0.515 Sum_probs=131.3
Q ss_pred HHHHHHHhccCCccccCHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHH
Q 019997 51 SKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKEL 130 (332)
Q Consensus 51 ~~l~~~llg~~~~~~ls~eEL~~lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~ea 130 (332)
..++.+++|.+. .|++||+.+++ ++.++|.|+++|+++++++|+|.+.+|+++|+||.++++++.++|+. ++
T Consensus 20 ~~~~~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~ 91 (292)
T PRK15094 20 SLLLSQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-EC 91 (292)
T ss_pred HHHHHHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HH
Confidence 444445566554 48999999998 45567999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc--cccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 131 MNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 131 l~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++.+.+++|+++|||+++.++++|+|+.+|++..... ....+.++ ++++++|++++++.++++.|++++.|++||+|
T Consensus 92 ~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD 170 (292)
T PRK15094 92 LDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVID 170 (292)
T ss_pred HHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe
Confidence 9999999999999998666799999999999864322 12347787 57778999999999999999999999999999
Q ss_pred cCCC
Q 019997 209 QYNK 212 (332)
Q Consensus 209 EyG~ 212 (332)
|||+
T Consensus 171 e~G~ 174 (292)
T PRK15094 171 EFGG 174 (292)
T ss_pred CCCC
Confidence 6543
No 6
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.6e-28 Score=220.26 Aligned_cols=180 Identities=25% Similarity=0.445 Sum_probs=156.2
Q ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHH
Q 019997 49 PISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 128 (332)
Q Consensus 49 ~l~~l~~~llg~~~~~~ls~eEL~~lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~ 128 (332)
+|.++++.+|..+++ +++||..++. ++++.+.|+.+-+.|+.+++++.+++|+|||+||++++++..+.++.
T Consensus 18 ffe~L~~~~f~gEpk---nr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~- 89 (293)
T COG4535 18 FFERLLSQLFHGEPK---NREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD- 89 (293)
T ss_pred HHHHHHHHHhcCCCc---CHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-
Confidence 356666667765554 6899999998 56678999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc--ccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEE
Q 019997 129 ELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVV 206 (332)
Q Consensus 129 eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~--~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~V 206 (332)
+++..+.+..||||||+.++.+++.|+++.|||++....+ ...+.++ .||+.+||++..+...|+.|+..+.|||+|
T Consensus 90 ~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIV 168 (293)
T COG4535 90 ECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIV 168 (293)
T ss_pred HHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEE
Confidence 9999999999999999998889999999999999865432 3567786 899999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCcccccCCccccccc-cCCCCCchh
Q 019997 207 VRQYNKNAEQPASNPASKSAYGSARDVKID-IDGEKPPQE 245 (332)
Q Consensus 207 VDEyG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 245 (332)
+|||||++|++++ ||.+++-+| |.+|++.+|
T Consensus 169 iDEfGgVsGLVTI--------EDiLEqIVGdIEDE~Deee 200 (293)
T COG4535 169 IDEFGGVSGLVTI--------EDILEQIVGDIEDEYDEEE 200 (293)
T ss_pred EeccCCeeeeEEH--------HHHHHHHhcccccccchhh
Confidence 9999998776666 666766665 677766544
No 7
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.87 E-value=8.5e-23 Score=207.25 Aligned_cols=315 Identities=40% Similarity=0.586 Sum_probs=239.3
Q ss_pred hhhHhhhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHhhcccccc
Q 019997 5 ALIAIHLCLQIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGK 84 (332)
Q Consensus 5 ~t~lilifGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Pii~~l~~l~~~llg~~~~~~ls~eEL~~lv~~~~~e~~e 84 (332)
++..+++||||+|+++|.+|...+...+.|+.++++++++||.|+++++ ++.+|......+.+.++..++..+..++++
T Consensus 106 s~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~~~~~~~~~l~~lv~~~~~e~~~ 184 (498)
T KOG2118|consen 106 SVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNLGEFLKRASLLALVQLVGNEAGK 184 (498)
T ss_pred ceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccccccchhhHHHHHHHHHHhccccc
Confidence 4567889999999999999999999999999999999999999999998 888898877778889999999998888777
Q ss_pred CCCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 85 GGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 85 ~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
|.+..+|..++.+++.+.++.++++|||..+++.++.+..+..+....+.++||||+||++.+..+.+|.+-...++..
T Consensus 185 -g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~ 263 (498)
T KOG2118|consen 185 -GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRL 263 (498)
T ss_pred -CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999986677778899999999999776677777666666554
Q ss_pred C----CccccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEcCCCCCCCCCCCCCcccccCCcccccc-c-cC
Q 019997 165 H----PEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYGSARDVKI-D-ID 238 (332)
Q Consensus 165 ~----~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDEyG~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 238 (332)
. .....++...+.++.+.+|+++++.+.+..|++.+.|++.|...++.. ...+.. .+ +..+ ..+ + .|
T Consensus 264 ~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~-~~~~l~----~~-~~~~-~ev~de~d 336 (498)
T KOG2118|consen 264 LQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDI-FVLTLE----DL-EEVV-KEVEDEED 336 (498)
T ss_pred hccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcce-eeEecc----ch-hhhc-ceeccccc
Confidence 4 334567888889999999999999999999999999999999844332 111111 11 1111 111 1 34
Q ss_pred CCCCchhhhhhhccccccccc-CCCCCCCccccccccccccccccccchhccCCCCCCCCCCC-CceEEEEehHHHHHHH
Q 019997 239 GEKPPQEKVLKTKRPLQKWKS-FPNSSNNNLYRTSSRSRKWTKDMYSDILQIDGNPLPKLPEE-EEAVGVITMEDVIEEL 316 (332)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~d~~~~~ 316 (332)
.++.++|...-+.+....|.. ...+..... ..+...+|.+.-+..+..++..+.+...+. .-..|+.|++++++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
T KOG2118|consen 337 KEEIKFETGIFTLRGIGDLDAGAVTDIDQLG--ERSPIKERSPRSSESLLDSRKSAFEDLAELGEIGHSVLTLESVIEPD 414 (498)
T ss_pred cccchhcccchhhcccccccccccchhhhhc--ccccccccCCCCCccccccccccccccccccccCccceehhhhhccc
Confidence 444444444444444444443 111111111 333444555555666666666666666555 4567899999999999
Q ss_pred Hccccccccccccc
Q 019997 317 LQEEIFDETDHHFE 330 (332)
Q Consensus 317 ~~~~~~~~~~~~~~ 330 (332)
.+++|.++.+.++.
T Consensus 415 ~~~~i~~~~~~~~~ 428 (498)
T KOG2118|consen 415 ESERILSDLQLVKI 428 (498)
T ss_pred cchhhhccccceec
Confidence 99999999887654
No 8
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.71 E-value=1.6e-16 Score=160.21 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=114.6
Q ss_pred ccCHHHHHHHHHhhccccccC------CCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHH--
Q 019997 65 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE-- 136 (332)
Q Consensus 65 ~ls~eEL~~lv~~~~~e~~e~------G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-- 136 (332)
.++.+|+..+++. ..++ +.++++|++.+++++++++.+|+++|++ +++++++++|+. ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4788899988873 2333 4799999999999999999999999996 889999999998 99999975
Q ss_pred ---cCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 137 ---KGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 137 ---~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++...+||+| +.++++|+|+.+|++.... ..+++++|.++++++++++++.+|++.|++++...+||+|
T Consensus 162 ~~~~~~~~v~Vvd-~~~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTN-ESKHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEEC-CCCeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 3445667776 4578999999999986533 3579999888888999999999999999999999999999
No 9
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=1e-16 Score=147.99 Aligned_cols=108 Identities=17% Similarity=0.320 Sum_probs=98.4
Q ss_pred HHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc--ccccc
Q 019997 96 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVK 173 (332)
Q Consensus 96 I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~--~~~V~ 173 (332)
+..+.+++..+|+++|++ ++.++.+++|+. ++.+.+.+++++..||+|+ |+++|+++..|+..+..++ ...|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 345568899999999997 889999999998 9999999999999999984 4899999999998865543 46899
Q ss_pred cccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 174 SVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 174 dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++|.++++++.+++.+++|++.|..+++..++|+|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 99999999999999999999999999999999999
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.67 E-value=9.8e-16 Score=154.56 Aligned_cols=133 Identities=17% Similarity=0.295 Sum_probs=113.7
Q ss_pred cccCHHHHHHHHHhhccccccCCCCCH-----HHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcC
Q 019997 64 ALFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 138 (332)
Q Consensus 64 ~~ls~eEL~~lv~~~~~e~~e~G~L~~-----eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 138 (332)
..+|++||..++.. .+..|.|.. +|.+++++++.+.+. |.+ ++++++++.|+. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 45799999998873 445788984 899999999977664 554 678899999998 9999999999
Q ss_pred CcEEEEEecCC--CcEEEEEEhhhHhccCCccccccccccc-cCCceeCCCCCHHHHHHHHHhCCCcEEEEEEc
Q 019997 139 HSRVPVYYEEP--TNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 209 (332)
Q Consensus 139 ~SriPVvd~~~--~~ivGIVt~rDLl~~~~~~~~~V~dim~-r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDE 209 (332)
++++||++++. ++++|+|+.+|++.... ...++.++|. .+++++++++++.++++.|++++.+.+||+|+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 99999998543 69999999999986432 3467999987 48999999999999999999999999999993
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.67 E-value=2.1e-15 Score=141.79 Aligned_cols=136 Identities=18% Similarity=0.321 Sum_probs=113.1
Q ss_pred ccCHHHHHHHHHhhccccccCCCCCHHHHHHHHHHh-------cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHc
Q 019997 65 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGAL-------ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK 137 (332)
Q Consensus 65 ~ls~eEL~~lv~~~~~e~~e~G~L~~eE~~~I~~vl-------~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~ 137 (332)
.++.++|...+. +-+|-=.|+.++.+.+.+-. .+.+.++.+||++ +|++++.+++++ ++.+.+.+|
T Consensus 202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 378899998887 23344567777644433322 5688999999997 899999999999 999999999
Q ss_pred CCcEEEEEecCCCcEEEEEEhhhHhccC-Cc--------cccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 138 GHSRVPVYYEEPTNIIGLILVKNLLTIH-PE--------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 138 ~~SriPVvd~~~~~ivGIVt~rDLl~~~-~~--------~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++..+||.|+ +.+++|+|+.+|++... .. ....++.+|..++.++.++++..+++..|...+.|.+||+|
T Consensus 275 ~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDE-HRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Cccccccccc-ccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 9999999984 56999999999998721 11 23579999999999999999999999999999999999999
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.60 E-value=6.4e-15 Score=141.25 Aligned_cols=104 Identities=20% Similarity=0.343 Sum_probs=95.9
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCC
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI 180 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v 180 (332)
.-+-++|.|+|+|..+..++..+++++ +..++..++|++||||+|. ..+++|+|+.||+....+ ..++..+|.+.+
T Consensus 184 KkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~~--~t~ieKVMtknp 259 (432)
T COG4109 184 KKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKKP--STTIEKVMTKNP 259 (432)
T ss_pred hhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCCC--CccHHHHhccCC
Confidence 556678999999999999999999998 9999999999999999984 458999999999987644 467999999999
Q ss_pred ceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 181 PRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 181 ~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.+|.+.+++..+.+.|...+..++||+|
T Consensus 260 ~tv~~~tsVAsvaq~MiwE~iem~PVv~ 287 (432)
T COG4109 260 ITVRAKTSVASVAQMMIWEGIEMLPVVD 287 (432)
T ss_pred eeecccchHHHHHHHHHhccceeeeEEc
Confidence 9999999999999999999999999999
No 13
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.55 E-value=1.4e-13 Score=140.22 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=112.2
Q ss_pred cccCHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcC
Q 019997 64 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 138 (332)
Q Consensus 64 ~~ls~eEL~~lv~~~~~e~~e~G~L~-----~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 138 (332)
...|.+||..++. +++..|.|. +++.++++++..+ +++|.+ ++++++++.|+. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 4578999999887 456677887 5788899988865 566764 778899999998 9999999999
Q ss_pred CcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccc-cCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 139 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 139 ~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~-r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++||++ +.++++|+|+.+|+..... ...++.++|. ++++++++++++.++++.|.+++.+.+||+|
T Consensus 118 ~~~lpVvd-~~g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD 186 (486)
T PRK05567 118 ISGVPVVD-ENGKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD 186 (486)
T ss_pred CCEEEEEc-cCCEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 99999998 4579999999999975432 3457899987 7899999999999999999999999999999
No 14
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=1.1e-13 Score=111.79 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=80.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc--ccccccccccCCceeCCCCCHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEIL 193 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~--~~~V~dim~r~v~~V~e~~~l~eaL 193 (332)
++.++++++++. ++++.|.+++++++||+++ .++++|+|+.+|+.+...+. ..++.++|..++.++++++++.+|+
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 457899999998 9999999999999999984 57999999999998753322 2468899988899999999999999
Q ss_pred HHHHhCCCcEEEEEE
Q 019997 194 NEFQKGHSHMAVVVR 208 (332)
Q Consensus 194 ~~M~~~~~~~a~VVD 208 (332)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999999
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=8.5e-14 Score=134.26 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=90.1
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----ccccccccccc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR 178 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r 178 (332)
...+|+++|++..++.++++++|+. ++++.|.++++..+||++ ++|+++|+|+.+|+.+.... ...++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd-~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICD-DNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEc-CCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 5668999998644788999999998 999999998888888887 45799999999999764322 13579999999
Q ss_pred CCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 179 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 179 ~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++.++++++++.+|++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999998
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.7e-13 Score=110.60 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=75.3
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc-----cccc------cccccCCceeC
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VPVK------SVTIRRIPRVP 184 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~-----~~V~------dim~r~v~~V~ 184 (332)
++.++++++++. ++++.|.+++++++||+++ .|+++|+++.+|++.+...+. .++. ..|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 9999999999999999984 579999999999986432211 1122 23345678999
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 185 ETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 185 e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999999
No 17
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=3.7e-13 Score=107.55 Aligned_cols=79 Identities=14% Similarity=0.318 Sum_probs=71.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
+++++++++++. ++.+.|.+++++.+||+++++++++|+++.+|+.+... +.++.+++++.+|++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578999999998 99999999999999999854478999999999986321 6789999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++.+.+||+|
T Consensus 68 m~~~~~~~lpVvd 80 (98)
T cd04618 68 LLKNKIHRLPVID 80 (98)
T ss_pred HHHCCCCEeeEEE
Confidence 9999999999999
No 18
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4.9e-13 Score=107.93 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=79.6
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC-C---c-cccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P---E-DEVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~-~---~-~~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++.. . . ...++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 9999999999999999984337999999999998631 1 1 22468889888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999999
No 19
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=4.5e-13 Score=106.92 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=80.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++.++++++++. ++++.+.+++++++||+++ .|+++|+++.+|++.....+..++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567899999998 9999999999999999984 47999999999998654333345888888899999999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+.+.+.+||++
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999998
No 20
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4e-13 Score=108.76 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=80.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC-----ccccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~-----~~~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.++++++++. ++++.|.++++..+||+++ .|+++|+++.+|+++... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 467799999998 9999999999999999984 578999999999986432 123578899888999999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|.+++.+.+||+|
T Consensus 80 ~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHHcCCCeEEEEC
Confidence 999999999999999999
No 21
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=4.6e-13 Score=107.22 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=79.7
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc---ccccccccccCCceeCCCCCHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EVPVKSVTIRRIPRVPETLPLYEI 192 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~---~~~V~dim~r~v~~V~e~~~l~ea 192 (332)
++.+++++.++. ++++.|.+++++++||+++ .++++|+++.+|++.+.... ..++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 466799999998 9999999999999999984 47999999999998753321 246888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019997 193 LNEFQKGHSHMAVVVR 208 (332)
Q Consensus 193 L~~M~~~~~~~a~VVD 208 (332)
+..|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999999
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=6.9e-13 Score=105.79 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=79.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc-----cccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~-----~~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.+++++.++. ++++.|.+++++++||+++ .++++|+++.+|++.+... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 467789999998 9999999999999999984 4699999999999864321 13468888878899999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|.+.+.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999999
No 23
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.46 E-value=6.2e-13 Score=106.27 Aligned_cols=91 Identities=43% Similarity=0.708 Sum_probs=77.9
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc--cccccccccCCceeCCCCCHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEIL 193 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~--~~V~dim~r~v~~V~e~~~l~eaL 193 (332)
++.+++++.++. ++++.|.+.+++.+||++++.++++|+++.+|++....... .++.++ ++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 577899999998 99999999999999999854378999999999987543221 346665 57889999999999999
Q ss_pred HHHHhCCCcEEEEEE
Q 019997 194 NEFQKGHSHMAVVVR 208 (332)
Q Consensus 194 ~~M~~~~~~~a~VVD 208 (332)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 80 EEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHhcCCcEEEEEE
Confidence 999999999999999
No 24
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.46 E-value=8.6e-13 Score=132.64 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHc-----CCcEEEEEecCCCcEEEEEEhhhH
Q 019997 87 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK-----GHSRVPVYYEEPTNIIGLILVKNL 161 (332)
Q Consensus 87 ~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~-----~~SriPVvd~~~~~ivGIVt~rDL 161 (332)
.+++++++.++..+.+++.+++.+|+. +++++++++|+. +++.++++. ....+.|+|. .++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHH
Confidence 588999999999999999999999996 899999999998 999999844 3456778874 4689999999999
Q ss_pred hccCCccccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 162 LTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 162 l~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+...+ ...+.++|.+.+.+|+++++.+++.+.|++++.-.+||||
T Consensus 190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 97544 3679999988899999999999999999999999999999
No 25
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=7.8e-13 Score=107.76 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=79.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc--------------ccccccccccCCc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--------------EVPVKSVTIRRIP 181 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~--------------~~~V~dim~r~v~ 181 (332)
++.+++++.++. ++.+.|.+++++++||+++ .|+++|+|+.+|++...... ..++.++|.++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999998 9999999999999999984 47999999999997643221 2368888888899
Q ss_pred eeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 182 RVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 182 ~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 999999999999999999999999999
No 26
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=3.4e-13 Score=129.61 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=89.3
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC---ccccccccccccCC
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRI 180 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~---~~~~~V~dim~r~v 180 (332)
..+|+++|++..++.++++++|+. ++++.|.+++...+||+|+ .|+++|+|+.+|+.+... ....++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 567999998733388999999998 9999999999999999984 579999999999876321 12356889998899
Q ss_pred ceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 181 PRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 181 ~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++++.+|++.|.+++...+||+|
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999999
No 27
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.46 E-value=3.1e-13 Score=117.16 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=93.6
Q ss_pred CCCCCHHH---HHHHHHHhcC--cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhh
Q 019997 85 GGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVK 159 (332)
Q Consensus 85 ~G~L~~eE---~~~I~~vl~l--~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~r 159 (332)
.|.+++.= ++++..+... ..++++.+|+. +++.+.+++++. ++++.|.++|||.+||+++ |.++|-|+.+
T Consensus 40 ~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~ 114 (187)
T COG3620 40 AGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITEN 114 (187)
T ss_pred cCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHH
Confidence 46777653 3333333333 55678999985 899999999998 9999999999999999974 6899999999
Q ss_pred hHhccCCc-----cccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 160 NLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 160 DLl~~~~~-----~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++.+...+ .+..++++|-.++++|++++++..+-+.+..+ +.+.|++
T Consensus 115 ~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e 166 (187)
T COG3620 115 DIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE 166 (187)
T ss_pred HHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe
Confidence 99886432 24689999999999999999999888887766 5566665
No 28
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=7.9e-13 Score=107.87 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=79.6
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc---------------ccccccccccCC
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------------EVPVKSVTIRRI 180 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~---------------~~~V~dim~r~v 180 (332)
++.+++++.++. ++++.|.+++++++||++++.|+++|+|+.+|++....+. ..++.++|..++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467789999998 9999999999999999985437999999999998643221 236888888889
Q ss_pred ceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 181 PRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 181 ~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 29
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1e-12 Score=108.17 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=76.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcccc-----------------cccccccc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----------------PVKSVTIR 178 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~-----------------~V~dim~r 178 (332)
++.++++++++. ++++.|.+++++.+||+++ .|+++|+++.+|++........ ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 9999999999999999984 4799999999999875432111 12245667
Q ss_pred CCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 179 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 179 ~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++.++++++++.+|++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 889999999999999999999999999999
No 30
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.2e-12 Score=104.59 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=79.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++.++++++++. ++.+.|.+++++.+||+++ .++++|+++.+|++... ...++.++|..++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 577899999998 9999999999999999984 57999999999998643 2357889988889999999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~Vv~ 91 (108)
T cd04596 79 MIWEGIEMLPVVD 91 (108)
T ss_pred HHHcCCCeeeEEc
Confidence 9999999999999
No 31
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=8.5e-13 Score=108.11 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=75.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc--c-----------cccccccccCCce
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--E-----------VPVKSVTIRRIPR 182 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~--~-----------~~V~dim~r~v~~ 182 (332)
++.++++++++. ++++.|.+++++++||++++.++++|+|+.+|++++.... . ..+.++|..++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467799999998 9999999999999999985336899999999997642111 0 1122456788889
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++.+|++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999999
No 32
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.44 E-value=1.4e-12 Score=105.32 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=79.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----cccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.++.+++++. ++++.|.+.+++++||+++ .|+++|+++.+|++..... ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345788999998 9999999999999999984 4799999999999864322 123478888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEEc
Q 019997 192 ILNEFQKGHSHMAVVVRQ 209 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVDE 209 (332)
+++.|.+++.+.+||+|+
T Consensus 80 ~l~~~~~~~~~~~~Vvd~ 97 (115)
T cd04593 80 ALDRMASRGLRQLPVVDR 97 (115)
T ss_pred HHHHHHHcCCceeeEEeC
Confidence 999999999999999993
No 33
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.43 E-value=2e-12 Score=102.95 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=78.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc---cccccccccCCceeCCCCCHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRRIPRVPETLPLYEI 192 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~---~~V~dim~r~v~~V~e~~~l~ea 192 (332)
++.++.++.++. ++++.|.+.+++++||+++ ++++|+++.+|++....... .++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 457799999998 9999999999999999984 79999999999987543321 15678888899999999999999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019997 193 LNEFQKGHSHMAVVVR 208 (332)
Q Consensus 193 L~~M~~~~~~~a~VVD 208 (332)
++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 34
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.9e-12 Score=105.20 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=79.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc-------------cccccccccccCCce
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------DEVPVKSVTIRRIPR 182 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~-------------~~~~V~dim~r~v~~ 182 (332)
++.++.+++++. ++.+.|.+.+++++||+++ .|+++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 9999999999999999984 4799999999999864321 235678888888999
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++.++++.|++++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999999
No 35
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.1e-12 Score=103.81 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=75.9
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc---------ccccccccccCCceeCCC
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------EVPVKSVTIRRIPRVPET 186 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~---------~~~V~dim~r~v~~V~e~ 186 (332)
++++++.++++. ++++.|.+++++.+||+++ .++++|+++.+|++++.... ..++.++|..++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999998 9999999999999999984 56899999999998753221 346888887889999999
Q ss_pred CCHHHHHHHHHhCCCcEEEEEE
Q 019997 187 LPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 187 ~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++.+++..|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998764 589998
No 36
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.5e-12 Score=104.03 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=79.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc--cccccccccccCCceeCCCCCHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 193 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--~~~~V~dim~r~v~~V~e~~~l~eaL 193 (332)
++.++.+++++. ++++.+.+.+++++||+++ .++++|+++..|+++.... ...++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999998 9999999899999999984 4789999999999864221 23478899888999999999999999
Q ss_pred HHHHhCCCcEEEEEE
Q 019997 194 NEFQKGHSHMAVVVR 208 (332)
Q Consensus 194 ~~M~~~~~~~a~VVD 208 (332)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 37
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.42 E-value=2.6e-12 Score=102.28 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=79.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc---cccccccccccCCceeCCCCCHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 192 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---~~~~V~dim~r~v~~V~e~~~l~ea 192 (332)
++.+++++.++. ++++.|.++++..+||+++ ++++|+++.+|++++... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456799999998 9999999999999999984 789999999999875422 2357888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019997 193 LNEFQKGHSHMAVVVR 208 (332)
Q Consensus 193 L~~M~~~~~~~a~VVD 208 (332)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999998
No 38
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=1.6e-12 Score=132.15 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=89.3
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCce
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 182 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~ 182 (332)
...+++++|++ +++++++++|+. ++++.|.+++++.+||+| +.++++|+|+.+|+..... ..++.++|.+++++
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD-~~gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVD-EEGRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEEC-CCCeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 35667899986 778999999998 999999999999999998 4568999999999976532 35699999999999
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++.+|+..|.+++.+.+||+|
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD 186 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVD 186 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999999999
No 39
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.9e-12 Score=109.06 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=79.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc---------------------------c
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------D 168 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---------------------------~ 168 (332)
++.++++++++. ++++.|.+.+++++||+| +.++++|+++.+|++..... .
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVD-DNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEEC-CCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 456789999998 999999999999999998 45799999999999864321 1
Q ss_pred ccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 169 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 169 ~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
..++.++|..+++++++++++.++++.|.+++.+.+||++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 2468899888889999999999999999999999999999
No 40
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.42 E-value=2.7e-12 Score=102.43 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=79.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc--ccccccccccCCceeCCCCCHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEIL 193 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~--~~~V~dim~r~v~~V~e~~~l~eaL 193 (332)
++..++.++++. ++++.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|..+++++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 467799999998 9999999999999999984 7999999999998754332 2468888878899999999999999
Q ss_pred HHHHhCCCcEEEEEE
Q 019997 194 NEFQKGHSHMAVVVR 208 (332)
Q Consensus 194 ~~M~~~~~~~a~VVD 208 (332)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 41
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.2e-12 Score=103.19 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=78.7
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc---cccccccccccCCceeCCCCCHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 192 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---~~~~V~dim~r~v~~V~e~~~l~ea 192 (332)
++.+++.+.++. ++++.|.+.+++++||+++ .++++|+++.+|+++.... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 356789999998 9999999999999999985 4799999999999764322 2346888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019997 193 LNEFQKGHSHMAVVVR 208 (332)
Q Consensus 193 L~~M~~~~~~~a~VVD 208 (332)
+..|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999999999999999
No 42
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.9e-12 Score=105.40 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=78.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----ccccccccccc--CCceeCCCCCH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR--RIPRVPETLPL 189 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r--~v~~V~e~~~l 189 (332)
++.++++++++. ++++.|.+++.+.+||+++ .++++|+|+.+|+++.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 457899999998 9999999999999999984 4689999999998874321 13457788764 68899999999
Q ss_pred HHHHHHHHhCCCcEEEEEEc
Q 019997 190 YEILNEFQKGHSHMAVVVRQ 209 (332)
Q Consensus 190 ~eaL~~M~~~~~~~a~VVDE 209 (332)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999993
No 43
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=1.9e-12 Score=106.73 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=74.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC----------CccccccccccccCCce--e
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----------PEDEVPVKSVTIRRIPR--V 183 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~----------~~~~~~V~dim~r~v~~--V 183 (332)
++.+++.++++. ++++.|.++++..+||+++ .|+++|+++.+|++... .....++.++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356799999998 9999999899999999984 47899999999998521 11235688887655433 3
Q ss_pred ----CCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 184 ----PETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 184 ----~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3789999999999999999999999
No 44
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.3e-12 Score=105.20 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=76.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcC-CcEEEEEecCCCcEEEEEEhhhHhccCCc--ccccccccccc--CCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIR--RIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~-~SriPVvd~~~~~ivGIVt~rDLl~~~~~--~~~~V~dim~r--~v~~V~e~~~l~ 190 (332)
++.++++++++. ++++.|.+++ .+.+||+++ .++++|+++.+|++..... ...++.++|.. +++++.+++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 466799999998 9999887665 899999984 4789999999999875432 13568888642 366899999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
+|++.|++++.+.+||+|
T Consensus 80 ~a~~~~~~~~~~~l~Vv~ 97 (114)
T cd04801 80 EVLKLLEEQGLDELAVVE 97 (114)
T ss_pred HHHHHHHHCCCCeeEEEc
Confidence 999999999999999999
No 45
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.41 E-value=3e-12 Score=102.47 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=78.3
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----cccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++++++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 346789999998 9999999999999999984 689999999999864321 235688888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 46
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.41 E-value=2.6e-12 Score=102.60 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=79.7
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----cccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.+++++.++. ++++.|.+.+++++||+++ .++++|+++.+|++++... +..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456799999998 9999999999999999984 4789999999999864322 125688998889999999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
++..|++.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 47
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.41 E-value=6.4e-13 Score=117.28 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=74.4
Q ss_pred chhhhHhhhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---ccCC--ccccCHHHHHHHHHh
Q 019997 3 VHALIAIHLCLQIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHGR--VALFRRAELKTLVNL 77 (332)
Q Consensus 3 ~~~t~lilifGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Pii~~l~~l~~~ll---g~~~--~~~ls~eEL~~lv~~ 77 (332)
+..++++++|||++||++|.+||++++.+.+|++++++++++|+++++.++.++++ |.+. ...++++||+.+++
T Consensus 93 ~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~~~s~eel~~lv~- 171 (183)
T PF01595_consen 93 LIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEEDPAVSEEELRSLVE- 171 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHHHHHHH-
Confidence 45678899999999999999999999999999999999999999999988887654 4443 45689999999999
Q ss_pred hccccccCCCCCHHH
Q 019997 78 HGNEAGKGGELTHDE 92 (332)
Q Consensus 78 ~~~e~~e~G~L~~eE 92 (332)
+++++|.++++|
T Consensus 172 ---~~~e~G~i~~~E 183 (183)
T PF01595_consen 172 ---EGEEEGVIEEEE 183 (183)
T ss_pred ---hHHHCCCCCCCC
Confidence 456779998775
No 48
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.4e-12 Score=102.03 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=79.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc--cccccccccccCCceeCCCCCHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 193 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--~~~~V~dim~r~v~~V~e~~~l~eaL 193 (332)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++..|++..... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567899999998 9999999999999999985 799999999999864321 23578899888999999999999999
Q ss_pred HHHHhCCCcEEEEEE
Q 019997 194 NEFQKGHSHMAVVVR 208 (332)
Q Consensus 194 ~~M~~~~~~~a~VVD 208 (332)
..|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999998
No 49
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.41 E-value=4.8e-12 Score=100.77 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=76.0
Q ss_pred EEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHHHH
Q 019997 118 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQ 197 (332)
Q Consensus 118 vtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~ 197 (332)
.++++++++. ++++.+.+.+++++||+++ ++++|+++.+|++.... .++.++|..++.+++++.++.+++..|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3688999998 9999999999999999984 79999999999986532 3477888888899999999999999999
Q ss_pred hCCCcEEEEEE
Q 019997 198 KGHSHMAVVVR 208 (332)
Q Consensus 198 ~~~~~~a~VVD 208 (332)
+++.+.+||+|
T Consensus 78 ~~~~~~~~Vv~ 88 (104)
T cd04594 78 KNKTRWCPVVD 88 (104)
T ss_pred HcCcceEEEEE
Confidence 99999999998
No 50
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.9e-12 Score=100.48 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=78.3
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++.++++++++. ++++.|.+++++++||++ + ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 999999999999999997 3 68999999999987543 346888888889999999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999999
No 51
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.40 E-value=4.2e-12 Score=100.76 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=79.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++..++++.++. ++++.|.++++..+||+++ .++++|+++.+|++.... ...++.++|...+.++++++++.+++..
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999998 9999999999999999984 478999999999986532 2356888888889999999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~vv~ 92 (109)
T cd04583 80 VLKRGPKYVPVVD 92 (109)
T ss_pred HHHcCCceeeEEC
Confidence 9999999999998
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=4.3e-12 Score=102.06 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=77.4
Q ss_pred eEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC---ccccccccccccCCceeCCCCCHHHHH
Q 019997 117 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIPRVPETLPLYEIL 193 (332)
Q Consensus 117 VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~---~~~~~V~dim~r~v~~V~e~~~l~eaL 193 (332)
.++++.++++. ++++.|.+.++..+||+++ .++++|+++.+|++.... ....++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 46789999998 9999999999999999974 478999999999875321 123468888877888999999999999
Q ss_pred HHHHhCCCcEEEEEE
Q 019997 194 NEFQKGHSHMAVVVR 208 (332)
Q Consensus 194 ~~M~~~~~~~a~VVD 208 (332)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 82 ALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHCCCCEEEEEC
Confidence 999999999999998
No 53
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.39 E-value=6.4e-12 Score=99.57 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=77.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++.+++++.++. ++++.|.+.++..+||+++ .|+++|+++.+|++.... .++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456789999998 9999999999999999974 479999999999987532 24778877777889999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++.+.+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999999
No 54
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.39 E-value=5e-12 Score=101.02 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=78.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc-CCc---cccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI-HPE---DEVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~-~~~---~~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.+++.+.++. ++.+.|.+++++++||+++ ++++|+++.+|++.. ... ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567799999998 9999999999999999984 799999999999852 111 235688888889999999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
+++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999999
No 55
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=6.2e-12 Score=99.63 Aligned_cols=88 Identities=16% Similarity=0.342 Sum_probs=78.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++.+++.+.++. ++++.|.+.+++.+||++ + ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d-~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVD-N-GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567899999998 999999988999999998 4 79999999999986432 346889888888999999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999999
No 56
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.39 E-value=4.7e-12 Score=102.06 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=78.6
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc--------------cccccccccccCCc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 181 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--------------~~~~V~dim~r~v~ 181 (332)
++.+++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456799999998 9999999999999999984 799999999999875422 12457788888899
Q ss_pred eeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 182 RVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 182 ~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++++.+++..|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 57
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.39 E-value=5.1e-12 Score=100.44 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=77.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCC-CCCHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE-TLPLYEILN 194 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e-~~~l~eaL~ 194 (332)
++.+++.+.++. ++++.|.+++++++||+++ .|+++|+++.+|++.... ...++.++|..++.++.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 567799999998 9999999999999999984 479999999999976432 345788887666676666 999999999
Q ss_pred HHHhCCCcEEEEEE
Q 019997 195 EFQKGHSHMAVVVR 208 (332)
Q Consensus 195 ~M~~~~~~~a~VVD 208 (332)
.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~Vv~ 93 (110)
T cd04601 80 LLHEHKIEKLPVVD 93 (110)
T ss_pred HHHHhCCCeeeEEc
Confidence 99999999999999
No 58
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4e-12 Score=105.51 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=78.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc----c--------------------cc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----E--------------------VP 171 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~----~--------------------~~ 171 (332)
++.++.++.++. ++++.+.+.+++++||+++ .++++|+++.+|++.+.... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456799999998 9999999999999999984 47999999999998643211 1 16
Q ss_pred cccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 172 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 172 V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7888888899999999999999999999999999999
No 59
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.4e-12 Score=103.02 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=78.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC-------------ccccccccccccCCce
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 182 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~-------------~~~~~V~dim~r~v~~ 182 (332)
++.++.++.++. ++++.|.+++++.+||++ +.|+++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQ-KAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEEC-CCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567899999998 999999999999999997 4579999999999986310 0234677888788899
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++.+++..|.+.+.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999999
No 60
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.5e-12 Score=104.35 Aligned_cols=91 Identities=14% Similarity=0.296 Sum_probs=77.4
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc-----------------ccccccccccc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----------------DEVPVKSVTIR 178 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~-----------------~~~~V~dim~r 178 (332)
++.++++++++. ++++.|.+.+++.+||+++ .++++|+++.+|+..+... ...++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999998 9999999999999999984 4789999999999753210 12467888888
Q ss_pred CCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 179 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 179 ~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++++++.+++..|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999998885
No 61
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.38 E-value=7.1e-12 Score=128.16 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=100.9
Q ss_pred ccCHHHHHHHHHhhccccccC----CCCC-HHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCC
Q 019997 65 LFRRAELKTLVNLHGNEAGKG----GELT-HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 139 (332)
Q Consensus 65 ~ls~eEL~~lv~~~~~e~~e~----G~L~-~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~ 139 (332)
..+..++...+... +-- ...+ ++....++.++.+. ..|++ +++++++++|+. ++++.|.++++
T Consensus 64 ~vt~~~lA~Ama~a----GGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~ 131 (505)
T PLN02274 64 TVTESDMAIAMAAL----GGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGF 131 (505)
T ss_pred ccchHHHHHHHHhC----CCeEEEcCCCCHHHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCC
Confidence 45677777666521 100 0123 33456777777542 22664 678899999998 99999999999
Q ss_pred cEEEEEecC--CCcEEEEEEhhhHhccCCccccccccccccC--CceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 140 SRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRR--IPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 140 SriPVvd~~--~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~--v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+.+||++++ .++++|+|+.+|+.... ....+|.++|..+ ++++++++++.+|++.|.+++.+.+||+|
T Consensus 132 ~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD 203 (505)
T PLN02274 132 SSVCVTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN 203 (505)
T ss_pred ceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 999999853 36899999999997644 3356799998766 77999999999999999999999999999
No 62
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.38 E-value=3e-12 Score=132.76 Aligned_cols=103 Identities=15% Similarity=0.210 Sum_probs=89.9
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC---Cc-cccccccccc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH---PE-DEVPVKSVTI 177 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~---~~-~~~~V~dim~ 177 (332)
++..+|+|+|++ ++.++++++++. ++.+.+.+++.+.+||+|+ +++++|+|+.+|+.+.. .. ...++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 567889999986 567899999998 9999999999999999984 46899999999998732 11 2356889988
Q ss_pred cCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 178 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 178 r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++++++++.++++.|.+++.+.+||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8999999999999999999999999999999
No 63
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.7e-12 Score=102.09 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=78.4
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC------ccccccccccccCCceeCCCCCH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------EDEVPVKSVTIRRIPRVPETLPL 189 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~------~~~~~V~dim~r~v~~V~e~~~l 189 (332)
++.+++++.++. ++++.|.+++++++||+++ .++++|+|+.+|+++... ....++.++|..+++++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999998 9999999999999999984 468999999999986321 12356888887888999999999
Q ss_pred HHHHHHHHhCCCcEEEEEE
Q 019997 190 YEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 190 ~eaL~~M~~~~~~~a~VVD 208 (332)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999999999999
No 64
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=5.3e-12 Score=101.66 Aligned_cols=90 Identities=13% Similarity=0.334 Sum_probs=75.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcC-CcEEEEEecCCCcEEEEEEhhhHhccCCc----cccccccccccCCceeCCC--CC
Q 019997 116 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPET--LP 188 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~-~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r~v~~V~e~--~~ 188 (332)
++.+++.+.++. ++++.|.+++ ...+||++ + ++++|+++.+|++..... ...++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 346789999998 9999998888 67778776 3 789999999999864322 1246888888888889887 78
Q ss_pred HHHHHHHHHhCCCcEEEEEE
Q 019997 189 LYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 189 l~eaL~~M~~~~~~~a~VVD 208 (332)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999999
No 65
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=9.9e-12 Score=98.52 Aligned_cols=78 Identities=9% Similarity=0.164 Sum_probs=70.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
++.++.++.++. ++++.|.+++++.+||+|+ .++++|+++.+|++.... +.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~-------------~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKSE-------------VVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCCC-------------cEEecCCCCHHHHHHH
Confidence 467899999998 9999999999999999984 479999999999986421 6789999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999999
No 66
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.37 E-value=6.9e-12 Score=101.35 Aligned_cols=91 Identities=15% Similarity=0.270 Sum_probs=77.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecC--CCcEEEEEEhhhHhccCCccccccccccccCCceeCC--CCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE--TLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~--~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e--~~~l~e 191 (332)
++.++++++++. ++++.|.+++++.+||+|+. .++++|+++.+|++.... ...++.++|..+...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456789999998 99999999999999999842 478999999999975432 235688898777777755 999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
+++.|.+++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999998
No 67
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=4.4e-12 Score=105.66 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=78.7
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC--------------------------ccc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--------------------------EDE 169 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~--------------------------~~~ 169 (332)
++.+++++.++. ++++.|.++++.++||++ +.++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd-~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVD-DDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEEC-CCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567899999998 999999999999999998 4579999999999975321 122
Q ss_pred cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 170 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 170 ~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.++.++|..+++++++++++.+++..|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 468888878899999999999999999999999999998
No 68
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.37 E-value=6.3e-12 Score=100.56 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=77.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC-C---cc-ccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P---ED-EVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~-~---~~-~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.++.++.++. ++++.|.+++.+++||+++ ++++|+|+.+|++... . .. ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 466789999998 9999999999999999984 7999999999997421 1 11 1568888888889999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~l~Vv~ 96 (113)
T cd04587 79 EALHLMVQGKFRHLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCcccEEC
Confidence 999999999999999998
No 69
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=8.2e-12 Score=100.07 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=77.8
Q ss_pred eEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----cccccccccccCCceeCCCCCHHHH
Q 019997 117 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYEI 192 (332)
Q Consensus 117 VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r~v~~V~e~~~l~ea 192 (332)
...+.+++++. ++++.|.+++++++||+++ .++++|+++.+|+++.... ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35689999998 9999999999999999984 4789999999999863211 2356888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019997 193 LNEFQKGHSHMAVVVR 208 (332)
Q Consensus 193 L~~M~~~~~~~a~VVD 208 (332)
++.|.+.+.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vvd 96 (113)
T cd04615 81 RWLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHHcCCCeeeEEC
Confidence 9999999999999998
No 70
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=6.6e-12 Score=100.48 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=73.5
Q ss_pred EcCCCCHHHHHHHHHHHcC-----CcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHH
Q 019997 120 IDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILN 194 (332)
Q Consensus 120 V~~d~tv~~eal~~m~~~~-----~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~ 194 (332)
+.+++++. ++++.|.+++ +..+||+++ .++++|+++.+|++... ...++.++|..++.++++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 57889998 9999998777 468999974 47899999999998753 235688887778899999999999999
Q ss_pred HHHhCCCcEEEEEE
Q 019997 195 EFQKGHSHMAVVVR 208 (332)
Q Consensus 195 ~M~~~~~~~a~VVD 208 (332)
.|..++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 71
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.2e-11 Score=98.94 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=77.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC-----ccccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~-----~~~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.++++++++. ++++.|.+++++.+||+++ ++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 9999999999999999984 38999999999986421 123568888878888999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 72
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.35 E-value=7.5e-12 Score=100.69 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=75.5
Q ss_pred cceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecC--CCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHH
Q 019997 115 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEI 192 (332)
Q Consensus 115 ~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~--~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~ea 192 (332)
....+++++.++. ++.+.+.+.+++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3567899999998 99999999999999999852 4789999999999865321 677888999999999999
Q ss_pred HHHHHhCCCcEEEEEE
Q 019997 193 LNEFQKGHSHMAVVVR 208 (332)
Q Consensus 193 L~~M~~~~~~~a~VVD 208 (332)
++.|++++.+.+||++
T Consensus 74 ~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 74 HQLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 9999999999999997
No 73
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.35 E-value=3.3e-12 Score=105.93 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=69.9
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC----CccccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~----~~~~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.+++++.++. ++++.|.+++.+.+||+++ .++++|+++.+|++... .....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999998 9999999999999999984 46899999999998521 12346899999999999999999999
Q ss_pred HHHHHHhC
Q 019997 192 ILNEFQKG 199 (332)
Q Consensus 192 aL~~M~~~ 199 (332)
+.+.|...
T Consensus 81 v~~~~~~~ 88 (124)
T cd04608 81 LSRILETD 88 (124)
T ss_pred HHhhcccC
Confidence 99976543
No 74
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=7.3e-12 Score=101.88 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=78.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc--------------cccccccccccCCc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 181 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--------------~~~~V~dim~r~v~ 181 (332)
++.+++++.++. ++.+.|.+++++++||+++ |+++|+++.+|+++.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 467899999998 9999999999999999984 799999999999763210 12467888888899
Q ss_pred eeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 182 RVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 182 ~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++++.++++.|.+++...+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 75
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.35 E-value=9.2e-12 Score=99.56 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=78.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----cccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.+++++.++. ++++.+.+.+++++||+++ .++++|+++.++++..... ...++.++|..++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 456688999998 9999999889999999984 4799999999998764322 124688998888899999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 76
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.3e-11 Score=96.71 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=78.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 195 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~ 195 (332)
+++++..+.++. ++++.+.+.+++++||++++ ++++|+++.++++..... .++.++|.+++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~~--~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPEE--EQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcccc--chHHHHhcCCCceECCCCCHHHHHHH
Confidence 567899999998 99999999999999999844 789999999999864322 35777778888999999999999999
Q ss_pred HHhCCCcEEEEEE
Q 019997 196 FQKGHSHMAVVVR 208 (332)
Q Consensus 196 M~~~~~~~a~VVD 208 (332)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999999
No 77
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=6.7e-12 Score=128.21 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecC--CCcEEEEEEhhhHhccCCc
Q 019997 90 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPE 167 (332)
Q Consensus 90 ~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~--~~~ivGIVt~rDLl~~~~~ 167 (332)
+++.+++..+.++.. +.++.| .++++++|+. ++++.|.+++++.+||+|++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~~---g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYKA---GFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHhc---CCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 445556555555432 222332 4799999998 99999999999999999852 4799999999999754323
Q ss_pred ccccccccccc--CCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 168 DEVPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 168 ~~~~V~dim~r--~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
...++.++|.. +++++++++++.+|++.|.+++...+||+|
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD 201 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD 201 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 34679999875 678899999999999999999999999999
No 78
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.34 E-value=8.7e-12 Score=125.37 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=86.3
Q ss_pred HHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----cccc
Q 019997 96 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVP 171 (332)
Q Consensus 96 I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~----~~~~ 171 (332)
+.++ |..++|+++|.+ ++.++.+++++. ++++.|.+++++.+||+|+ .++++|+|+.+|+++.... ...+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4444 688999999986 688999999998 9999999999999999984 4789999999999863221 2346
Q ss_pred cccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 172 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 172 V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+.++|.++++++++++++.++++.|.+++ .++|++
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~ 436 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTE 436 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence 88998888889999999999999998864 444444
No 79
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.3e-11 Score=100.07 Aligned_cols=90 Identities=14% Similarity=0.283 Sum_probs=78.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc--------------cccccccccccCCc
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 181 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--------------~~~~V~dim~r~v~ 181 (332)
++.+++++.++. ++++.|.+.+++++||+++ |+++|+++..|++..... ...++.++|..++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456799999998 9999999999999999984 799999999999864321 13467788888899
Q ss_pred eeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 182 RVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 182 ~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++++.+++..|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999999
No 80
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.5e-11 Score=97.10 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=77.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc-CCc----cccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI-HPE----DEVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~-~~~----~~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.++.++.++. ++.+.|.+++++.+||+++ |+++|+++.+|++.. ... ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 467799999998 9999999999999999984 799999999998631 111 12348888888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|...+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 81
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.9e-11 Score=97.79 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=76.6
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc-----cccccccccccCCceeCCCCCHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 190 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~-----~~~~V~dim~r~v~~V~e~~~l~ 190 (332)
++.++++++++. ++++.|.+++++.++|.+ + ++++|+++.+|+++.... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 467899999998 999999888888888775 3 799999999999864221 13568899877788999999999
Q ss_pred HHHHHHHhCCCcEEEEEE
Q 019997 191 EILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 191 eaL~~M~~~~~~~a~VVD 208 (332)
++++.|.+++...+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.32 E-value=1.9e-11 Score=124.87 Aligned_cols=132 Identities=11% Similarity=0.233 Sum_probs=100.8
Q ss_pred ccCHHHHHHHHHhhccccccCCC----CCH-HHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCC
Q 019997 65 LFRRAELKTLVNLHGNEAGKGGE----LTH-DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 139 (332)
Q Consensus 65 ~ls~eEL~~lv~~~~~e~~e~G~----L~~-eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~ 139 (332)
..++.++...+.. .+--|. ++. ++.+.++.+.++ ++.|++ +++++++++|+. ++++.|.++++
T Consensus 60 ~vt~~~ma~a~a~----~GglGvi~~~~~~e~~~~~v~kvk~~-----e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~ 127 (495)
T PTZ00314 60 TVTEHKMAIAMAL----MGGIGVIHNNCSIEEQVEEVRKVKRF-----ENGFIM--DPYVLSPNHTVA-DVLEIKEKKGF 127 (495)
T ss_pred ccccHHHHHHHHH----CCCeEEecCCCCHHHHHHHHhhcccc-----cccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence 4566666665552 222222 233 345566666544 446664 567899999998 99999999999
Q ss_pred cEEEEEecC--CCcEEEEEEhhhHhccCCcccccccccccc--CCceeCCCCCHHHHHHHHHhCCCcEEEEEEc
Q 019997 140 SRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 209 (332)
Q Consensus 140 SriPVvd~~--~~~ivGIVt~rDLl~~~~~~~~~V~dim~r--~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDE 209 (332)
+.+||++++ .++++|+|+.+|+.... ....++.++|.. +++++++++++.++++.|.+++.+.+||+|+
T Consensus 128 s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~ 200 (495)
T PTZ00314 128 SSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND 200 (495)
T ss_pred cEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence 999999853 36899999999997543 234679999876 7899999999999999999999999999993
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.32 E-value=2.2e-11 Score=96.58 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=73.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcc----ccccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~----~~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.+++.+.++. ++.+.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 456789999998 9999999999999999984 7999999999998753221 24688888788899999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
+++.|++ .. .+||+|
T Consensus 79 ~~~~~~~-~~-~~~vv~ 93 (110)
T cd04609 79 LSELLDR-GN-VAVVVD 93 (110)
T ss_pred HHHHHHh-CC-ceeEEe
Confidence 9999998 33 478888
No 84
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.31 E-value=2.2e-11 Score=98.59 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=78.4
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC-------------ccccccccccccCCce
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 182 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~-------------~~~~~V~dim~r~v~~ 182 (332)
++.+++++.++. ++++.+.+.+++++||+++ .++++|+++.+|+..... ....++.++|..++++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999998 9999999999999999985 479999999999976421 1124688888888999
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 85
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.30 E-value=3.1e-11 Score=122.59 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=87.7
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCce
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 182 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~ 182 (332)
...++.++|++ +++++++++|+. ++++.|.+++++.+||+++ ++++|+|+.+|+..... ..++.++|..++++
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceE
Confidence 35667888986 668899999998 9999999999999999973 58999999999976532 35799999999999
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++.+|++.|.+++.+.+||+|
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD 184 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVD 184 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 99999999999999999999999999
No 86
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=6.1e-11 Score=92.85 Aligned_cols=91 Identities=23% Similarity=0.338 Sum_probs=77.7
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc----cccccccccCCceeCCCCCHHH
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE----VPVKSVTIRRIPRVPETLPLYE 191 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~----~~V~dim~r~v~~V~e~~~l~e 191 (332)
++.+++.+.++. ++.+.|.+++++++||++++ ++++|+++.+|++....... ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999998 99999999999999999853 79999999999987543211 1256777888999999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 019997 192 ILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 192 aL~~M~~~~~~~a~VVD 208 (332)
+++.|.+.+.+.++|+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999999
No 87
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=3.3e-11 Score=97.42 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=74.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcC-CcEEEEEecCCCcEEEEEEhhhHhccCCc-------cccccccccccCCceeCCCC
Q 019997 116 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE-------DEVPVKSVTIRRIPRVPETL 187 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~-~SriPVvd~~~~~ivGIVt~rDLl~~~~~-------~~~~V~dim~r~v~~V~e~~ 187 (332)
++.++++++++. ++++.+...+ ++.+||+++ ++++|+++.+|++.+... ...++.++|..+++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345689999998 9999998877 899999985 799999999999854321 23568899888899999999
Q ss_pred CHHHHHHHHHhCCCc---EEEEEE
Q 019997 188 PLYEILNEFQKGHSH---MAVVVR 208 (332)
Q Consensus 188 ~l~eaL~~M~~~~~~---~a~VVD 208 (332)
++.+++..|.+++.. .++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999988753 346777
No 88
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4.9e-11 Score=101.01 Aligned_cols=90 Identities=11% Similarity=0.250 Sum_probs=77.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----------------------------
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------- 167 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---------------------------- 167 (332)
+++++++++++. ++++.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999998 9999999999999999984 799999999999753211
Q ss_pred --------cccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 168 --------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 168 --------~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
...++.++|.++++++++++++.+++..|++.+.+.+||++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12456778888899999999999999999999999999999
No 89
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=93.69 Aligned_cols=95 Identities=25% Similarity=0.390 Sum_probs=82.6
Q ss_pred cccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc--c-ccccccccCCceeCC
Q 019997 109 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--V-PVKSVTIRRIPRVPE 185 (332)
Q Consensus 109 dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~--~-~V~dim~r~v~~V~e 185 (332)
++|. ..++++.++.++. ++...|.+++++++||.+. ++++|+++.+|++.+..... . ++.++|.+++.++.+
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4454 4778999999998 9999999999999999973 37999999999998654322 2 588998889999999
Q ss_pred CCCHHHHHHHHHh-CCCcEEEEEE
Q 019997 186 TLPLYEILNEFQK-GHSHMAVVVR 208 (332)
Q Consensus 186 ~~~l~eaL~~M~~-~~~~~a~VVD 208 (332)
+.++.++++.|.+ ++.+.+||+|
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999999999999 7999999999
No 90
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.25 E-value=3.7e-11 Score=112.31 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=88.6
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC---ccccccccccccCCc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIP 181 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~---~~~~~V~dim~r~v~ 181 (332)
++|+++|.+. ++.++++++++. ++++.|.+.+++.+||+++ .++++|+|+.+|+++... ....++.++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 9999999999999999984 479999999999987532 124679999988999
Q ss_pred eeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 182 RVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 182 ~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++++.+|++.|.+++.+.+||+|
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVD 258 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEEC
Confidence 999999999999999999999999999
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.13 E-value=2e-10 Score=116.23 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=92.4
Q ss_pred HHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC----Cccccccc
Q 019997 98 GALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVK 173 (332)
Q Consensus 98 ~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~----~~~~~~V~ 173 (332)
+.-++--.+|+++|+. +.++|++.+|+. ++.+.|.+.|.+.+.|++ +.+...|||+.+|+.... .+...+|+
T Consensus 142 ~~~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~-~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~ 217 (610)
T COG2905 142 GESEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLD-DSGPLLGIVTRKDLRSRVIADGRSKTQKVS 217 (610)
T ss_pred ccchHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEc-CCCCccceeehHHHHHHHHhcCCCcccchh
Confidence 3344555678999986 568899999998 999999999999888887 457899999999998632 22357899
Q ss_pred cccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 174 SVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 174 dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++|+.|+++|..++.+.+|+-.|.+++++.+||.+
T Consensus 218 evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 218 EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred hhhccCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 99999999999999999999999999999999997
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.07 E-value=6.1e-10 Score=94.27 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=78.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcccc---c------------ccccc----
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---P------------VKSVT---- 176 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~---~------------V~dim---- 176 (332)
++.++++++++. ++++.|.+++++.+||+|+ .++++|+|+.+|++++...... . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999998 9999999999999999984 4799999999999874322110 1 23354
Q ss_pred -----ccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEcCCCC
Q 019997 177 -----IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKN 213 (332)
Q Consensus 177 -----~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDEyG~~ 213 (332)
..+++++++++++.+|++.|.+++.+.+||+|+.++.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~ 121 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR 121 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence 3678899999999999999999999999999965554
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.02 E-value=1.4e-09 Score=112.18 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=50.2
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..+|+++|++ ++.++++++++. ++++.|.+++++++||+|+ .|+++|+|+.+|+..
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHH
Confidence 4689999986 778899999998 9999999999999999984 479999999999864
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.71 E-value=4e-08 Score=70.24 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=35.0
Q ss_pred cccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 172 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 172 V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
|+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 4678888999999999999999999999999999999
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.69 E-value=3.2e-08 Score=70.76 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=49.4
Q ss_pred cccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 107 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 107 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
|+++|++ ++.++++++++. ++++.|.+++++++||+|+ .++++|+++.+||+++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhh
Confidence 5789997 789999999998 9999999999999999984 4899999999999864
No 96
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=8.1e-07 Score=88.78 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=79.0
Q ss_pred cccccccccCcc-eEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCcee
Q 019997 105 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRV 183 (332)
Q Consensus 105 ~tV~dIMtPr~~-VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V 183 (332)
.++.++|.+... .+...++.+.. ++++.|...+.+.+.|+| +.++++|+++.+++...... ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIE-RGNKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEc-CCCcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567788853221 22344667787 899999999999999998 45799999999999865433 245777777778899
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 184 PETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 184 ~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
++++++.+++..|...... +||+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999998777 89999
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.53 E-value=6.1e-07 Score=89.13 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=74.5
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc-----cc-cccc------cccCCcee
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VP-VKSV------TIRRIPRV 183 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~-----~~-V~di------m~r~v~~V 183 (332)
.+..+..+.++. ++++.|...+++.+||++. .|+.+|.++..|+.....+.. .. ++.. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999998 9999999999999999985 467799999999987543321 11 2211 12346889
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 184 PETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 184 ~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.++.++.+++..|..+++|.+.|||
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEc
Confidence 9999999999999999999999999
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.45 E-value=4.7e-07 Score=89.11 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=105.1
Q ss_pred cccCHHHHHHHHHhhccccccC-CCCCHHHHHHHHHHhcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEE
Q 019997 64 ALFRRAELKTLVNLHGNEAGKG-GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 142 (332)
Q Consensus 64 ~~ls~eEL~~lv~~~~~e~~e~-G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~Sri 142 (332)
..+++.|+...+.++.-=+.=. .-=.+.+..+++.+-.|.. .-++. .+.+.++.|+. ++++....++|+.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~~----p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFINN----PIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---ccccC----CcccCCcccch-hhhhhccccccccc
Confidence 4567888777666431000000 0114667888888888875 33333 35688999998 99999999999999
Q ss_pred EEEecC--CCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEc
Q 019997 143 PVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 209 (332)
Q Consensus 143 PVvd~~--~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDE 209 (332)
||..+. ..+++|+|+.+|+-.. .+....+.++|+...++.+.+.++.++=..+++.+...+||||+
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~ 210 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD 210 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence 999632 3689999999999766 55568899999888899999999999999999999999999994
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.41 E-value=3.4e-06 Score=83.38 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred EEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCceeCCCCCHHHHHHHHH
Q 019997 118 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQ 197 (332)
Q Consensus 118 vtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~V~e~~~l~eaL~~M~ 197 (332)
....++.+.. ++++.+...+.....|+++ .+++.|+++.+++..+.... ..+.+.|...++++++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3456677887 8999999999999999984 56999999999998654432 3577777777889999999999999999
Q ss_pred hCCCcEEEEEE
Q 019997 198 KGHSHMAVVVR 208 (332)
Q Consensus 198 ~~~~~~a~VVD 208 (332)
.++.. +||+|
T Consensus 330 ~~~~~-~~v~~ 339 (363)
T TIGR01186 330 KAGIK-VPVVD 339 (363)
T ss_pred hCCCC-EEEEC
Confidence 99999 99999
No 100
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.6e-06 Score=89.11 Aligned_cols=105 Identities=23% Similarity=0.306 Sum_probs=85.2
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCC----CcEEEEEEhhhHhccCCc---------
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP----TNIIGLILVKNLLTIHPE--------- 167 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~----~~ivGIVt~rDLl~~~~~--------- 167 (332)
.+.+++|+++|.+ ++++++.-..+. .+.+.++.+.|..+||+|+.. +++.|+|-...++.....
T Consensus 578 ~mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred HhhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 4577889999997 899999999998 999999999999999998533 467899888887532110
Q ss_pred -----------------c----------------ccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 168 -----------------D----------------EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 168 -----------------~----------------~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
. -.++..+|-..+++|++++++..++..|+.-+.+.+.||+
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~ 728 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP 728 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence 0 0234455666688999999999999999999999999998
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.02 E-value=3.5e-06 Score=85.34 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=80.8
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCCce
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 182 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v~~ 182 (332)
++.+++++|++ ++.++++++++. ++++.|.++++..+||+|+ .|+++|+|+.+|++....+. ...++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56679999987 678899999998 9999999999999999984 56899999999999765432 235666555555
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVV 207 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VV 207 (332)
..+++.+.+++..|.+++...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH
Confidence 5567788999999999998888775
No 102
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=1.6e-05 Score=63.85 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=49.2
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.++.++|.. .+.++.+++++. ++++.|.+++.+++||+++ .++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 3468999975 567899999998 9999999999999999984 468999999999975
No 103
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.91 E-value=3.4e-05 Score=61.20 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=50.9
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+...++.++|.+ .+.++++++++. ++++.|.+++...+||+++ .++++|+|+.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 4455679999986 567899999998 9999999999999999984 479999999999975
No 104
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.90 E-value=2.9e-05 Score=62.88 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCC--CcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~--~~ivGIVt~rDLl~ 163 (332)
+...+++++|+...++.++++++++. ++++.|.+++..++||++++. ++++|+|+.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667889997423578999999998 999999999999999998542 68999999999875
No 105
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=4.1e-05 Score=62.43 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=48.8
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||+++ .++++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 679999986 677899999998 9999999999999999984 468999999999864
No 106
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=4.5e-05 Score=60.97 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=50.1
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.++.++|.+...+.++.+++++. ++++.|.+++.+++||+++ .++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 457889998644567899999998 9999999999999999984 468999999999874
No 107
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.79 E-value=3.8e-05 Score=71.88 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=37.4
Q ss_pred cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 170 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 170 ~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.++.++|.++++++.+++++.++.+.|.+++.+.+||+|
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd 210 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD 210 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence 468899999999999999999999999999999999999
No 108
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.76 E-value=0.00012 Score=75.45 Aligned_cols=102 Identities=13% Similarity=0.192 Sum_probs=72.1
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccCC-
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI- 180 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~v- 180 (332)
..+.+|+++|++..++++++++.++. ++++.|.+++...+||+|+ .++++|+|+.+|+++...... ...+-.-+-.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~~~P~-a~~d~~grL~V 234 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHKENPL-ELLDSSKRYVV 234 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcccChh-hhhhhccCeee
Confidence 45678999999766889999999998 9999999999999999984 468999999999998542211 1111101110
Q ss_pred -ceeCCCCCHHHHHHHHHhCCCcEEEEE
Q 019997 181 -PRVPETLPLYEILNEFQKGHSHMAVVV 207 (332)
Q Consensus 181 -~~V~e~~~l~eaL~~M~~~~~~~a~VV 207 (332)
..+... ...+.++.+.+.+.+.+.|-
T Consensus 235 ~~av~~~-~~~~ra~~Lv~aGvd~i~vd 261 (502)
T PRK07107 235 GAGINTR-DYAERVPALVEAGADVLCID 261 (502)
T ss_pred eeccChh-hHHHHHHHHHHhCCCeEeec
Confidence 123222 34566677777887776553
No 109
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.76 E-value=6.2e-05 Score=60.50 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=49.8
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|.. ++.++.+++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 34678899975 677899999998 9999999999999999984 468999999999874
No 110
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.74 E-value=5.2e-05 Score=78.48 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=78.2
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc---------------
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------- 167 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~--------------- 167 (332)
...+|+++|+. .++.++++++++. ++.+.|.+++++.+||+|+ +|+++|+|+.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 46789999982 3788999999998 9999999999999999984 4799999999999864321
Q ss_pred -----------cccccccccccCCcee---CCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 168 -----------DEVPVKSVTIRRIPRV---PETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 168 -----------~~~~V~dim~r~v~~V---~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+..++.++|.+.+..+ +...+..-+.+.|++.+....+++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia 375 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA 375 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH
Confidence 0113556665555444 4466667788888888877776654
No 111
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.73 E-value=8.2e-05 Score=59.06 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=41.9
Q ss_pred eEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 117 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 117 VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.++.+++++. ++++.|.+++..++||++++.|+++|+++.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999854479999999999975
No 112
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=9.8e-05 Score=60.17 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=36.5
Q ss_pred cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 170 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 170 ~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 468899888999999999999999999999999999999
No 113
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.64 E-value=0.00012 Score=58.61 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=50.7
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+...++.++|.+ .+.++++++++. ++++.|.+.+.+++||+++ .|+++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 345678999975 678899999998 9999999999999999974 479999999999975
No 114
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=0.00013 Score=57.56 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=49.1
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..+++++|.+ .+.+++++.++. ++++.|.+++.+++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5678999975 678899999998 9999999999999999984 79999999999975
No 115
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=7.2e-05 Score=61.33 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=47.8
Q ss_pred cccccccccccCcceEEEc----CCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~----~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|++...+..++ +++++. ++++.|.+++.+++||++++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997633333443 688998 99999999999999999854368999999999974
No 116
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00013 Score=58.12 Aligned_cols=56 Identities=20% Similarity=0.469 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ .+.++++++++. ++++.|.+++.+++||+++ .++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 3468899975 567899999998 9999999999999999984 478999999999863
No 117
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00013 Score=58.94 Aligned_cols=58 Identities=26% Similarity=0.515 Sum_probs=50.9
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
....+++++|.+ .+.++++++++. ++++.|.+++.+++||+++ .|+++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 356678999975 678899999998 9999999999999999984 578999999999975
No 118
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.60 E-value=0.00022 Score=73.06 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=71.2
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccc----cccCC
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSV----TIRRI 180 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~di----m~r~v 180 (332)
..++++|++ ++.++++++++. ++++.|.+++...+||+|+ +++++|+|+.+||++..... +..+. +....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999986 788999999998 9999999999999999984 46999999999999854322 11111 11111
Q ss_pred ceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 181 PRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 181 ~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+.......+.+..|.+.+... +++|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 333445778888888888887 5666
No 119
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.58 E-value=0.00019 Score=57.33 Aligned_cols=57 Identities=14% Similarity=0.298 Sum_probs=48.3
Q ss_pred cccccccccccCcceEEEcCC--CCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d--~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.++.++|.+ .+.++.++ .++. ++++.|.+++...+||+++ .|+++|+|+.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 34678899975 56778777 7887 9999999999999999984 479999999999975
No 120
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.58 E-value=0.00026 Score=55.57 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=47.2
Q ss_pred ccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 106 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 106 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+++++|.+ .+.++.+++++. ++++.|.+++...+||+++ .++++|+|+.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 47889976 456799999998 9999999999999999984 468999999999874
No 121
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00018 Score=56.99 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=48.5
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ .+.++++++++. ++++.|.+++..++||++ + ++++|+|+.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhc
Confidence 4578999965 567899999998 999999999999999997 3 68999999999975
No 122
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00019 Score=56.31 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=48.6
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++++|.+ .+.++.+++++. ++++.|.+++..++||+++ .|+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 3468899975 567899999998 9999999999999999984 468999999999975
No 123
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00019 Score=57.42 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.++.++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+..|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 45678899964 678999999998 9999999999999999984 78999999999975
No 124
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00021 Score=58.04 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=45.1
Q ss_pred cccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHh
Q 019997 107 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 162 (332)
Q Consensus 107 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl 162 (332)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||+++ .++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 3456764 678899999998 9999999999999999984 46899999999985
No 125
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.55 E-value=0.00023 Score=56.93 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=48.3
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecC-CCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~-~~~ivGIVt~rDLl~ 163 (332)
.+++++|.+ .+.++.+++++. ++++.|.+++..++||++++ .++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788875 678899999998 99999999999999999854 268999999999975
No 126
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00021 Score=56.63 Aligned_cols=57 Identities=16% Similarity=0.390 Sum_probs=49.8
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|.+ .+.+++++.++. ++++.|.+++...+||+++ .|+++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 35578999975 577899999998 9999999999999999984 468999999999975
No 127
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00022 Score=59.75 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|++ ++.++.+++++. ++++.|.++++.++||+++ |+++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35679999976 567899999998 9999999999999999984 78999999999875
No 128
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.53 E-value=0.00021 Score=56.47 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=49.8
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ .+.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4788999986 567899999998 99999999999999999841468999999999874
No 129
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.00024 Score=56.39 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ .+.++++++++. ++++.|.+++..++||+++ .|+++|+++..|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 45678889975 678899999998 9999999999999999974 469999999999974
No 130
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.00025 Score=56.25 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=48.6
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ .+.++.+++++. ++++.|..++..++||+++ .++++|+++.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 3458899975 677899999998 9999999999999999974 478999999999975
No 131
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.51 E-value=0.00046 Score=54.88 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=47.4
Q ss_pred ccccccccCcceEEEcCCCCHHHHHHHHHHH-cCCcEEEEEecCCCcEEEEEEhhhHh
Q 019997 106 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPTNIIGLILVKNLL 162 (332)
Q Consensus 106 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-~~~SriPVvd~~~~~ivGIVt~rDLl 162 (332)
++.++|+. .++++.++.++. ++.+.|.+ ++++++||++++.++++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 69999986 678999999998 99999999 79999999984323899999999974
No 132
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00026 Score=56.12 Aligned_cols=55 Identities=25% Similarity=0.529 Sum_probs=48.4
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.++.++|.+ .+.++.+++++. ++++.|.+++..++||+++ |+++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4568888974 677899999998 9999999999999999984 78999999999864
No 133
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00029 Score=55.79 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ .+.++++++++. ++++.|.+++...+||++ .|+++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 45678899975 677899999998 999999999999999998 468999999999874
No 134
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00018 Score=57.87 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=50.2
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+...++.++|.+ ++.++++++++. ++++.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456678899975 678899999998 9999999999999999984 79999999999975
No 135
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00025 Score=58.42 Aligned_cols=55 Identities=18% Similarity=0.455 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ ++..+.+++++. ++++.|.+.+.+++||+++ ++++|+++.+|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 4478999975 678899999998 9999999999999999984 79999999999975
No 136
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.48 E-value=0.00031 Score=55.72 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+|+..|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45578899975 678899999998 9999999999999999973 68999999999975
No 137
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.48 E-value=0.00052 Score=70.20 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=70.7
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccccccccccC--Cce
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRR--IPR 182 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~V~dim~r~--v~~ 182 (332)
.+++++|++ +++++++++++. ++++.|.+++...+||+++ .++++|+|+.+||++..... +..+..-+. --.
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 579999986 788999999998 9999999999999999984 46899999999999754321 121110000 012
Q ss_pred eCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 183 VPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 183 V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+.......+.+..|.+.+... +|+|
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~-i~~D 244 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDV-LVID 244 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCE-EEEe
Confidence 444556678888888888777 4556
No 138
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.00011 Score=70.20 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=38.0
Q ss_pred ccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 169 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 169 ~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
..+..++|.+++++|++++++.+|.++|++++...+||+|
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d 283 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLD 283 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccc
Confidence 4567899999999999999999999999999999999999
No 139
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.46 E-value=0.00089 Score=66.70 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHhcCcccccccc--cccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 88 LTHDETTIIAGALELTEKTASDA--MTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 88 L~~eE~~~I~~vl~l~~~tV~dI--MtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
++.+..+.+....-.....+..+ ++++...+++.+..++- ++...+.++++.|+||.|...++++.+++.+-++...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l 211 (381)
T KOG1764|consen 133 SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFL 211 (381)
T ss_pred CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHH
Confidence 44555555555544444444332 44555558899999997 8999999999999999985567999999999998643
Q ss_pred Ccc----------ccccccc---cccCCceeCCCCCHHHHHHHHHhCCCcEEEEEEc
Q 019997 166 PED----------EVPVKSV---TIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 209 (332)
Q Consensus 166 ~~~----------~~~V~di---m~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVDE 209 (332)
... ..++.++ +...+..+.+++++.+|++.|...+..-+||||+
T Consensus 212 ~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 212 WLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred HHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 211 1122222 1235778999999999999999999999999993
No 140
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.46 E-value=0.00038 Score=54.85 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=48.2
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.++.++|.+ ++.++.+++++. ++++.|.+++...+||+++ .++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 467788875 678899999998 9999999999999999974 468999999999975
No 141
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00027 Score=57.13 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ .+.++++++++. ++++.|.+.+...+||+++ .++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 45578889875 678999999998 9999999999999999984 368999999999975
No 142
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.45 E-value=0.0003 Score=56.40 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=50.4
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
....++.++|.+ .+.+++.++++. ++++.|.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456778999976 678899999998 9999999999999999984 78999999999975
No 143
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00033 Score=54.77 Aligned_cols=55 Identities=33% Similarity=0.430 Sum_probs=48.4
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ .+.++++++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 3468889975 677899999998 9999999999999999984 79999999999873
No 144
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.44 E-value=0.00036 Score=56.14 Aligned_cols=58 Identities=16% Similarity=0.357 Sum_probs=49.9
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
....++.++|.. ++.++++++++. ++++.|.+.+...+||+++ .++++|+++..|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 356678889964 677899999998 9999999999999999984 468999999999975
No 145
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.44 E-value=0.00025 Score=68.47 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=51.7
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
+.+.+|+++|++ ++.++.+++++. ++++.|.+++..++||++ .++++|+|+.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 456789999986 678999999998 999999999999999997 3589999999999864
No 146
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.44 E-value=0.00028 Score=55.88 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=48.3
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.++.++|.+ .+.++++++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 578899965 567899999998 9999999999999999984 478999999999974
No 147
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.43 E-value=0.00027 Score=58.50 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=50.4
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
....++.++|.+ ++.++++++++. ++++.|.+.+.+++||++ .|+++|+|+.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 356789999975 678899999998 999999999999999998 479999999999875
No 148
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.42 E-value=0.00072 Score=69.70 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=71.1
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccc--cccccccccC-
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRR- 179 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~--~~V~dim~r~- 179 (332)
.+.+|+++|++...+.++++++++. ++++.|.+++..++||+|+ .++++|+|+.+|+++...... .+..|-.-+=
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999865688999999998 9999999999999999984 468999999999987542211 1111110000
Q ss_pred -CceeCCCCCHHHHHHHHHhCCCcEEEE
Q 019997 180 -IPRVPETLPLYEILNEFQKGHSHMAVV 206 (332)
Q Consensus 180 -v~~V~e~~~l~eaL~~M~~~~~~~a~V 206 (332)
-..|.....-.+-++.+.+.+..++.|
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i~i 266 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVVVL 266 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence 112444444566666777777776544
No 149
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.0003 Score=55.82 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=49.1
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ .+.++++++++. ++++.|.+++..++||+++ |+++|+|+.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 58 GVATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CCccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 35578899975 567899999998 9999999999999999984 79999999999975
No 150
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00045 Score=55.87 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=44.6
Q ss_pred ccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 108 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 108 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.++|.. ++.++++++++. ++++.|.+++.+++||+++ .|+++|+|+.+|++.
T Consensus 68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ 119 (120)
T ss_pred cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence 445543 567899999998 9999999999999999984 478999999999875
No 151
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00035 Score=56.27 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ ++.++++++++. ++++.|.+++.+.+||+++ .|+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 45668889864 678899999998 9999999999999999984 479999999999975
No 152
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.40 E-value=0.0004 Score=66.78 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=51.0
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
.+.+|+++|++ ++.++.++.++. ++++.|.+++..++||+++ .++++|+|+.+|++++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 34568999986 677899999998 9999999999999999984 3589999999999864
No 153
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.39 E-value=0.00052 Score=54.15 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=47.2
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.++.++|.+ ...+++++.++. ++++.|.+++..++||++ + |+++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357888875 567899999998 999999999999999997 3 78999999999874
No 154
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.39 E-value=0.0004 Score=54.94 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.. .+.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888865 678899999998 9999999999999999984 78999999999975
No 155
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.38 E-value=0.00048 Score=54.05 Aligned_cols=55 Identities=31% Similarity=0.569 Sum_probs=48.0
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..+.++|.+ .+.++++++++. ++++.|.+++..++||+++ .|+++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 468888975 667899999998 9999999999999999984 468999999999874
No 156
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.37 E-value=0.00097 Score=68.40 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=70.6
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCcccc---ccccccccCC
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---PVKSVTIRRI 180 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~---~V~dim~r~v 180 (332)
..+++++|++ .+++++++++++. ++++.|.+++...+||+++ .++++|+|+.+|++........ .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4578999983 3678999999998 9999999999999999984 5799999999999875321110 0111212222
Q ss_pred ceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 181 PRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 181 ~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
..+.+ .-.+.++.|.+++.+.+ |+|
T Consensus 223 i~~~~--~~~e~a~~L~~agvdvi-vvD 247 (486)
T PRK05567 223 VGVGA--DNEERAEALVEAGVDVL-VVD 247 (486)
T ss_pred cccCc--chHHHHHHHHHhCCCEE-EEE
Confidence 22333 22788889999999955 566
No 157
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.37 E-value=0.001 Score=68.46 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=54.2
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
.+.+|+++|++..++++++++.++. ++++.|.+++...+||+|+ .++++|+|+.+|+++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence 3567999999866889999999998 9999999999999999984 46899999999999753
No 158
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.37 E-value=0.00053 Score=54.01 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ ++.++++++++. ++++.|.+.+...+||+++ .|+++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 45678899975 678899999998 9999999999999999984 468999999999975
No 159
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.00048 Score=54.56 Aligned_cols=56 Identities=25% Similarity=0.497 Sum_probs=48.6
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ ++.++++++++. ++++.|.+++...+||+++ . +++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 45578899975 677899999998 9999999999999999984 3 8999999999874
No 160
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.36 E-value=0.00047 Score=54.69 Aligned_cols=57 Identities=19% Similarity=0.407 Sum_probs=49.5
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
+.+++++|.+ ++.++.+++++. ++++.|.+++...+||+++ .++++|+|+..|++..
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence 4568899976 578899999998 9999999999999999984 4789999999999853
No 161
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.36 E-value=0.00052 Score=53.97 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=46.4
Q ss_pred ccccccccccCcceEEEcC-CCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.. .+..+.. ++++. ++++.|.+.++.++||+++ .++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 4578899965 3344556 99998 9999999999999999984 468999999999974
No 162
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00035 Score=55.62 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=46.4
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|.+ .+.++++++++. ++++.|.+.+ .+||++ +.++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVD-DDGIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhc
Confidence 45679999986 577899999998 9999998765 499998 4468999999999975
No 163
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00047 Score=54.53 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=48.1
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..+.++|.. ++.+++++.++. ++++.|.+++..++||+++ .++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 468889964 678899999998 9999999999999999974 368999999999864
No 164
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.33 E-value=0.00045 Score=55.35 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=46.6
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++++|.+....+..++++++. ++++.|.+++...+||+++ .++++|+|+.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 45889997644444445599998 9999999999999999974 468999999999874
No 165
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.0011 Score=68.77 Aligned_cols=101 Identities=21% Similarity=0.319 Sum_probs=75.0
Q ss_pred cccccccCc---ceEEEcCC-CCHHHHHHHHHHHcCCcEEEEEe-cCCCcEEEEEEhhhHhccCC------c--------
Q 019997 107 ASDAMTPIA---ETFAIDIN-AKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIHP------E-------- 167 (332)
Q Consensus 107 V~dIMtPr~---~VvtV~~d-~tv~~eal~~m~~~~~SriPVvd-~~~~~ivGIVt~rDLl~~~~------~-------- 167 (332)
..++|.|+. ....++.+ +|++ +....|.++.|+.+||+- ++..+++|++..||+..... +
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 345555432 34556555 9998 999999999999999995 34568999999999863210 0
Q ss_pred -------------cccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 168 -------------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 168 -------------~~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
....++++|--.+.+|...++...++++|++-+.....|..
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 01346677666677899999999999999998888877755
No 166
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.31 E-value=0.00077 Score=44.24 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=27.3
Q ss_pred CCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 179 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 179 ~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++++++++++.+++..|...+.+.++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 356789999999999999999999999998
No 167
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.001 Score=52.44 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=47.0
Q ss_pred ccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 106 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 106 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.++|.+ ++.++++++++. ++++.|.+++...+||+++ .|+++|+|+.+|+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 47888865 577899999998 9999999999999999984 479999999999964
No 168
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00055 Score=55.86 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEec-CCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~-~~~~ivGIVt~rDLl~ 163 (332)
.+.++.++|++ ++.++++++++. ++++.|.+.++..+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899975 678899999998 9999999999999999953 4578999999999875
No 169
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.28 E-value=0.00074 Score=44.34 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=40.2
Q ss_pred eEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 117 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 117 VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
+.++++++++. ++++.|.+++++.+||+++ .++++|+++.++++..
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHh
Confidence 35688999998 9999999999999999984 3689999999998754
No 170
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.23 E-value=0.00088 Score=52.65 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=40.9
Q ss_pred eEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 117 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 117 VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.+++++.++. ++++.|.+++..++||+++ .++++|+|+.+|+++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 67899999998 9999999999999999984 468999999999975
No 171
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.0007 Score=54.55 Aligned_cols=55 Identities=33% Similarity=0.492 Sum_probs=48.0
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++++|.. ++.++++++++. ++++.|.+++..++||+++ .++++|+++..|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 357888864 678899999998 9999999999999999974 468999999999975
No 172
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00098 Score=54.41 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=44.2
Q ss_pred cccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 109 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 109 dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.|.+ ++.++++++++. ++++.|.+++.+++||+++ .++++|+|+..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 45543 678899999998 9999999999999999984 478999999999975
No 173
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.0014 Score=51.92 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=48.1
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..+++++|.+ .+.++.+++++. ++++.|.+++...+||+++ .|+++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 3468888875 577899999998 9999999999999999984 478999999999874
No 174
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.17 E-value=0.00056 Score=60.07 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=35.5
Q ss_pred ccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 171 PVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 171 ~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
....+|.+|++++.+++++.+++..|+.++...+||++
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 45567899999999999999999999999999999998
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.13 E-value=0.0017 Score=54.69 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 179 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 179 ~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.++++++++++.+|++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD 31 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD 31 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 467899999999999999999999999999
No 176
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.12 E-value=0.0013 Score=51.89 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=47.7
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.++.++|.+ .+.+++++.++. ++++.|.+.+...+||+++ .++++|+|+.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 567888864 678899999998 9999999999999999974 468999999999874
No 177
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.08 E-value=0.0013 Score=51.97 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=45.5
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..+.++|. ++.++.+++++. ++++.|.+++.+.+||+++ .++++|+++.+|++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 34666664 457899999998 9999999999999999984 468999999999874
No 178
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.0015 Score=54.89 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
...++.++|.+ .+.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899976 678899999998 9999999999999999984 78999999999874
No 179
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.99 E-value=0.0035 Score=51.57 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=28.8
Q ss_pred cCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 178 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 178 r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+++.++++++++.++++.|++++...+||+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd 32 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD 32 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 5678899999999999999999999999999
No 180
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.95 E-value=0.002 Score=51.38 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=43.7
Q ss_pred ccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 110 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 110 IMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+|.+ ++.++++++++. ++++.|.+++...+||++ .|+++|+|+.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 7865 677899999998 999999999999999995 468999999999975
No 181
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.93 E-value=0.0033 Score=62.71 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=61.5
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc-cccccccccccC
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-DEVPVKSVTIRR 179 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~-~~~~V~dim~r~ 179 (332)
...-.+++++|.|...+ ...+.+ . +++. ++.+.+.|++. |+++..+...+... ....+.+ +...
T Consensus 270 ~~~~l~a~~~m~~~~~~--~~~~~~-~--~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (382)
T TIGR03415 270 PLNVLTARSLMRPLTDL--EHVDGG-W--CVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAA 334 (382)
T ss_pred cccceeHHHHhcccccc--cccCcc-h--hhhh---cccceeEeecc------ceecccchHhHhhcccccchhh-hccc
Confidence 35566889999663322 233333 2 3322 78888999873 88887776543221 2234666 4778
Q ss_pred CceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 180 IPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 180 v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.++|++++++.+++..+...... ++|+|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 88999999999999999888766 45667
No 182
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.89 E-value=0.0023 Score=66.79 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=50.9
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCC-CcEEEEEEhhhHhcc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTI 164 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~-~~ivGIVt~rDLl~~ 164 (332)
+.+++++|++ ++.++++++++. ++++.|.+++.+++||+|+++ ++++|+|+.+|+++.
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~ 569 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA 569 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence 4678999986 667899999998 999999999999999998543 479999999999875
No 183
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.87 E-value=0.0027 Score=64.06 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=36.3
Q ss_pred cccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 170 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 170 ~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.+++++|.+++.++++++++.++++.|.+++...+||+|
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd 373 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT 373 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 578899889999999999999999999999999999999
No 184
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.87 E-value=0.0021 Score=51.37 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=46.7
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCc---EEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~S---riPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.+++++|.+ .+.++++++++. ++++.|.+++.. ..||+++ .++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 45679999976 678899999998 999999988753 4567764 479999999999874
No 185
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.82 E-value=0.0031 Score=49.53 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=45.8
Q ss_pred ccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 106 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 106 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+.++|.. .+.++++++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46777864 567799999998 9999999999999999983 58999999999875
No 186
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.73 E-value=0.0069 Score=46.66 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=46.0
Q ss_pred cccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 107 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 107 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+.++|.. ++.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677764 677899999998 99999999999999999854 79999999999874
No 187
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.70 E-value=0.0036 Score=58.40 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.6
Q ss_pred cccccccccC-CceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 170 VPVKSVTIRR-IPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 170 ~~V~dim~r~-v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.+++++|.++ ++++++++++.++++.|.+.+...++|+|
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd 194 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD 194 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe
Confidence 4678898888 89999999999999999999999999999
No 188
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.68 E-value=0.0035 Score=64.55 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=62.3
Q ss_pred cCCCCCHHHHHHHHHHhc---CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhh
Q 019997 84 KGGELTHDETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKN 160 (332)
Q Consensus 84 e~G~L~~eE~~~I~~vl~---l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rD 160 (332)
..|.+. ++.+..+++. -...+|+++||. ++++++.++-+- +|+-.|.++++.++||++ +|+++|+|+..|
T Consensus 192 ~~GIvT--~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e--~gq~~Gilt~~d 264 (610)
T COG2905 192 LLGIVT--RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTE--DGQPLGILTLTD 264 (610)
T ss_pred ccceee--hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeec--CCeeeEEeeHHH
Confidence 345443 4556666663 356679999996 889999999999 999999999999999996 379999999999
Q ss_pred HhccCC
Q 019997 161 LLTIHP 166 (332)
Q Consensus 161 Ll~~~~ 166 (332)
+++...
T Consensus 265 Il~l~s 270 (610)
T COG2905 265 ILRLFS 270 (610)
T ss_pred HHHhhC
Confidence 998644
No 189
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.66 E-value=0.0047 Score=59.34 Aligned_cols=87 Identities=13% Similarity=0.206 Sum_probs=66.5
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc---cc------cccccc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DE------VPVKSV 175 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---~~------~~V~di 175 (332)
.+++++|.| ++++++++++. ++++.|++++...+||+|+ .|.++|+|+..|++..... +. ..+..+
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~ 207 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL 207 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence 458899974 45799999998 9999999999999999984 4689999999999874321 11 012221
Q ss_pred cccCCceeCCCCCHHHHHHHHH
Q 019997 176 TIRRIPRVPETLPLYEILNEFQ 197 (332)
Q Consensus 176 m~r~v~~V~e~~~l~eaL~~M~ 197 (332)
....+.|+..+++.++.+.+.
T Consensus 208 -~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 -SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred -CCCeEEEEeccCHHHHHHHhC
Confidence 233567999999999998874
No 190
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.64 E-value=0.012 Score=59.99 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=52.6
Q ss_pred cccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 103 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 103 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
...+++++|++ .++.+++++.++. ++++.|.+++...+||+| +.++++|+|+.+|++...
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 35679999984 3678999999998 999999999999999998 457999999999999753
No 191
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.61 E-value=0.0042 Score=48.57 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=43.4
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
..++.++|.+ ++.++++++++. ++.+.|.+ . ...||+++ .++++|+++.+|++.
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhc
Confidence 3568888965 567899999998 89988887 3 34788874 478999999999975
No 192
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0077 Score=58.63 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=73.4
Q ss_pred HHHHHHHhcCcccccccccccCcceEEEc-CCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCccccc
Q 019997 93 TTIIAGALELTEKTASDAMTPIAETFAID-INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP 171 (332)
Q Consensus 93 ~~~I~~vl~l~~~tV~dIMtPr~~VvtV~-~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~~~~~ 171 (332)
+..++++-...-.+++++|.+ .+..... +...-. .+.+.+.+.+.+.+-+++ ..++.+|+++..++...
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------
Confidence 556667667777899999985 2222222 222223 577778877777777777 55679999999887653
Q ss_pred cccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 172 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 172 V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.+..++..++.++++.+.+....+...+++ |+|
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 246778889999999999999999988776 556
No 193
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.34 E-value=0.016 Score=58.14 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=67.3
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC-c--cc-ccccccc---
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-E--DE-VPVKSVT--- 176 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~-~--~~-~~V~dim--- 176 (332)
..+++++|.| +.++++++++. ++++.|++++....+|+| +.|.++|+||..|++...- + +. ..-.+.+
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 3457888864 57899999998 999999999999999998 4578999999999987431 1 11 0111111
Q ss_pred ccCCceeCCCCCHHHHHHHHHh
Q 019997 177 IRRIPRVPETLPLYEILNEFQK 198 (332)
Q Consensus 177 ~r~v~~V~e~~~l~eaL~~M~~ 198 (332)
....+.++..+++.++.+.|.-
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 2335678889999999999854
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.015 Score=59.14 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=53.8
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
.-++..++++|.+ +++++.+++..+ ++++.+.+++...+||+| +.++++|+++..|++..
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidv 251 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDV 251 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHH
Confidence 5577889999987 478999999998 999999999999999998 45799999999999864
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.07 E-value=0.036 Score=54.49 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=52.5
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
..++.++..+||. ..+++.+.+|+. .+.+.|.-.++.-+||+++ +.+++|+|+.+|++..
T Consensus 245 ~~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~ 304 (432)
T COG4109 245 KKPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKS 304 (432)
T ss_pred CCCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHH
Confidence 3467788999996 678999999999 8999999999999999985 4689999999999874
No 196
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.097 Score=52.41 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=71.5
Q ss_pred cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc---cccccccccc
Q 019997 101 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTI 177 (332)
Q Consensus 101 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---~~~~V~dim~ 177 (332)
.=....+.++||++. ++.+.+.+++ ++-+.+.++.-.++||++ +.|+++-+|+..||.+...- ....-+++|.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~~~yPlask~~~kqll~ 242 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKNRDYPLASKDSTKQLLC 242 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhhcCCCccccCcccceee
Confidence 445667899999965 7899999998 899999999999999998 56899999999999874321 1111223322
Q ss_pred cCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 178 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 178 r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.- .+.....=..-+..+.+.++..+ |+|
T Consensus 243 gA--aiGTre~dK~rl~ll~~aGvdvv-iLD 270 (503)
T KOG2550|consen 243 GA--AIGTRDDDKERLDLLVQAGVDVV-ILD 270 (503)
T ss_pred ee--ccccccchhHHHHHhhhcCCcEE-EEe
Confidence 11 13334444566777788887654 667
No 197
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.05 E-value=0.14 Score=50.89 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=48.2
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
..+.+.|.+ .+.++++++++. +++..+.++++. +||+| +.|+++|+|+..+++...
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHH
Confidence 457888865 567899999998 999999999999 99998 457999999999998754
No 198
>PRK11573 hypothetical protein; Provisional
Probab=93.42 E-value=0.4 Score=48.39 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=59.4
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC----cc-c----cccccccccCCceeCCC
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----ED-E----VPVKSVTIRRIPRVPET 186 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~----~~-~----~~V~dim~r~v~~V~e~ 186 (332)
++..|++++++. ++++.|++++..-.-|+| +.|...|+||..|++...- ++ . ..+... ....+.|+..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 467899999998 999999999988888888 4578999999999987321 11 0 112221 2335678999
Q ss_pred CCHHHHHHHHH
Q 019997 187 LPLYEILNEFQ 197 (332)
Q Consensus 187 ~~l~eaL~~M~ 197 (332)
+++.++-+.+.
T Consensus 340 ~~l~d~~~~l~ 350 (413)
T PRK11573 340 ANVREINKAFN 350 (413)
T ss_pred eEHHHHHHHhC
Confidence 99999988874
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.66 E-value=0.45 Score=47.85 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=47.2
Q ss_pred ccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 104 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 104 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
...+.++|.+ .+.++++++++. +++..+.++.+. +||+| +.|+++|+|+..+++...
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRAL 392 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHH
Confidence 3457777765 567899999998 999999987766 99998 457999999999998754
No 200
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.09 E-value=0.64 Score=49.89 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=48.7
Q ss_pred CcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCC-cEEEEEEhhhHhcc
Q 019997 102 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT-NIIGLILVKNLLTI 164 (332)
Q Consensus 102 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~-~ivGIVt~rDLl~~ 164 (332)
...+.|+++|.. ++.++..+.|.. |+.+.+.......+|++++... -++|.|..+.|..+
T Consensus 585 ~h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 585 VHTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eeEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 345678999986 889999999998 8888777666999999985332 47899999998764
No 201
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=89.02 E-value=3.4 Score=41.79 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=68.2
Q ss_pred HHHHHHHhcCcc-cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCCc----
Q 019997 93 TTIIAGALELTE-KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---- 167 (332)
Q Consensus 93 ~~~I~~vl~l~~-~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~~---- 167 (332)
++++....+-.. ......+. ++..+++++++. ++++.|++.+..-.-|+| +.|.+.|+||..|++...-.
T Consensus 259 Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvGei~d 333 (429)
T COG1253 259 KDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLS-DLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVGEIPD 333 (429)
T ss_pred HHHHHHHhcCccccchhhccc---CCeEecCCCcHH-HHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhCCCcC
Confidence 445555554432 33332332 567899999998 999999998888888888 45789999999999873211
Q ss_pred --c---ccccccccccCCceeCCCCCHHHHHHHHHhC
Q 019997 168 --D---EVPVKSVTIRRIPRVPETLPLYEILNEFQKG 199 (332)
Q Consensus 168 --~---~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~ 199 (332)
+ ...+... ..+-+.|...+++.++-+.+.-.
T Consensus 334 e~d~~~~~~~~~~-~~~~~~v~G~~~l~e~~~~l~~~ 369 (429)
T COG1253 334 EHDEDEEEDIIQR-DDDGWLVDGRVPLEELEELLGID 369 (429)
T ss_pred cccccccccceEe-cCCcEEEeccccHHHHHHHhCCC
Confidence 1 1122222 12236789999999988887643
No 202
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=87.20 E-value=1.7 Score=43.44 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=48.5
Q ss_pred hcCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 100 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 100 l~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.+-.+.+-.+++.-..++.+++..+++. +-+..|.+.+-.---|+| +.|.+.|+|+..|++.
T Consensus 260 ~e~~~~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlE 321 (423)
T COG4536 260 NEKNEFTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILE 321 (423)
T ss_pred hccCcccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHH
Confidence 3334455566775556788999999998 888888877766667777 5689999999999986
No 203
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=80.31 E-value=5.8 Score=38.08 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHh-cCcccccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 85 GGELTHDETTIIAGAL-ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 85 ~G~L~~eE~~~I~~vl-~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
.|.|++--++.++.-+ ++.. ..+ + .++.|.-|. + ||+++. +++-|.+ .|+++=+=+..+++.
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~-~l~--k----TivfVTHDi--d-EA~kLa-----dri~vm~--~G~i~Q~~~P~~il~ 225 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQK-ELG--K----TIVFVTHDI--D-EALKLA-----DRIAVMD--AGEIVQYDTPDEILA 225 (309)
T ss_pred ccccChhhHHHHHHHHHHHHH-HhC--C----EEEEEecCH--H-HHHhhh-----ceEEEec--CCeEEEeCCHHHHHh
Confidence 3666666666665544 1111 111 1 244444443 4 666543 5677886 478999999888887
Q ss_pred cCCcc-----------------ccccccccccCC----ceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 164 IHPED-----------------EVPVKSVTIRRI----PRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 164 ~~~~~-----------------~~~V~dim~r~v----~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
.+.++ ...+.+.|.... -.++......+++..+...+...++|+|
T Consensus 226 ~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 226 NPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred CccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 65431 012334432222 1245555666788888888889999999
No 204
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=73.44 E-value=4.9 Score=42.64 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=44.9
Q ss_pred ccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhcc
Q 019997 108 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 164 (332)
Q Consensus 108 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~ 164 (332)
..+|-| ...++++++++. .+...++.-|..++-|+.. ..+++|+++.+|+.+.
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPK-TNRVVGILTRKDLARY 745 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecC-CCceeEEEehhhhhhH
Confidence 345655 557899999998 8999999999999999984 4578999999999864
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=73.25 E-value=5.6 Score=39.82 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
++.++++++++. +++..+.++++- +||++ + |+++|+|+..+++...
T Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 334 APTVINPDTLMR-DVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cCcccCCCCcHH-HHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHH
Confidence 567899999998 999988877754 88887 4 8999999999998653
No 206
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=69.10 E-value=25 Score=33.35 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=66.0
Q ss_pred cccccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccCC---------ccccccccc
Q 019997 105 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---------EDEVPVKSV 175 (332)
Q Consensus 105 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~~---------~~~~~V~di 175 (332)
-.++++..| .+.|++.-.+. ..++.++.+++...-|+| +-|-+-|+|+..|++...- +....+..+
T Consensus 133 F~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l 207 (293)
T COG4535 133 FDIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL 207 (293)
T ss_pred ccHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh
Confidence 345666654 57799999998 899999999999999998 4578999999999986321 112345554
Q ss_pred cccCCceeCCCCCHHHHHHHHHhC
Q 019997 176 TIRRIPRVPETLPLYEILNEFQKG 199 (332)
Q Consensus 176 m~r~v~~V~e~~~l~eaL~~M~~~ 199 (332)
.+-.+.|..-+++.+-=..|..+
T Consensus 208 -s~~~~~VrALT~IedFNe~F~t~ 230 (293)
T COG4535 208 -SRHTWRVRALTEIEDFNEAFGTH 230 (293)
T ss_pred -cCCceEEEecccHHHHHHHhcCC
Confidence 56677888888888777666543
No 207
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=55.64 E-value=21 Score=37.97 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=44.6
Q ss_pred cccccccCcceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 107 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 107 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
.+++|-. .++++...++.+ -+++++++-|.+..-|.. +|++.|+|+-||+++..
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 4566644 457888999998 899999999999999985 47999999999998753
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=49.63 E-value=30 Score=33.36 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=41.3
Q ss_pred cccccccccccCcce--EEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 103 TEKTASDAMTPIAET--FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 103 ~~~tV~dIMtPr~~V--vtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
+..++.+.|.+.... -.+.....-. +++..+...+.+.+||+| ++|+++|.|+..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhh
Confidence 556677777653211 1233344444 677778889999999998 4579999999999875
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=48.25 E-value=24 Score=38.50 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred ccccccccccCCceeCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019997 169 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 208 (332)
Q Consensus 169 ~~~V~dim~r~v~~V~e~~~l~eaL~~M~~~~~~~a~VVD 208 (332)
+..|.++|.+++.++..+++..++-+.++....+..|+||
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceecccc
Confidence 4578999999999999999999999999988899999998
No 210
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=42.98 E-value=17 Score=34.02 Aligned_cols=61 Identities=25% Similarity=0.374 Sum_probs=52.5
Q ss_pred CCCCCcccccccccccccccc-ccchhccCCCCCCCCCCCCceEEEEehHHHHHHHHccccc
Q 019997 262 NSSNNNLYRTSSRSRKWTKDM-YSDILQIDGNPLPKLPEEEEAVGVITMEDVIEELLQEEIF 322 (332)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~ 322 (332)
.-++...|+-+.+--.+-|++ -++|....|-+.+++.++-+++|-+|-.++++.|-+..+.
T Consensus 95 ~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~eep~VlGA~ts~eLi~~lke~gV~ 156 (258)
T COG2047 95 ATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLVEEPRVLGAVTSKELIEELKEHGVE 156 (258)
T ss_pred ccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCcccCCceeEEecCCHHHHHHHHHcCeE
Confidence 356667788888777788888 7889999999999999999999999999999999876653
No 211
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=41.76 E-value=36 Score=35.76 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhc
Q 019997 126 LDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 163 (332)
Q Consensus 126 v~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~ 163 (332)
++ .+.+.+.+.|-+-++|+.+ +++.|+|+++|+++
T Consensus 415 l~-~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 415 LD-AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HH-HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 44 5666777889999999973 68999999999985
No 212
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.72 E-value=47 Score=33.00 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=37.4
Q ss_pred ceEEEcCCCCHHHHHHHHHHHcCCcEEEEEecCCCcEEEEEEhhhHhccC
Q 019997 116 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 165 (332)
Q Consensus 116 ~VvtV~~d~tv~~eal~~m~~~~~SriPVvd~~~~~ivGIVt~rDLl~~~ 165 (332)
.+.+++.++++. +.+..+.+.+ ..+||+| ++++++|+++...++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvd-e~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVD-EDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEc-CCCcEEEEecHHHHHHHH
Confidence 567889999998 7777776544 4689998 457999999999998754
No 213
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=35.81 E-value=74 Score=30.48 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019997 33 APFVRVLVWICYPVAFPISKLLDVLL 58 (332)
Q Consensus 33 a~~l~~~~~l~~Pii~~l~~l~~~ll 58 (332)
.++.++++-+|+|++++.+.+.+|..
T Consensus 209 tYi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 209 TYICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888999988888888754
No 214
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.41 E-value=1.6e+02 Score=22.87 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHh
Q 019997 30 STVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNL 77 (332)
Q Consensus 30 ~~~a~~l~~~~~l~~Pii~~l~~l~~~llg~~~~~~ls~eEL~~lv~~ 77 (332)
.+++.|+.+|+.+..|+=.++-... ..+....+|.+|.+.|-++
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~s----k~~~~~~Ls~~d~~~L~~L 47 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRS----KRQGSQGLSQEEQQRLAQL 47 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcc----cccCCCCCCHHHHHHHHHH
Confidence 3456666677766666633232222 1233446888886665554
No 215
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.34 E-value=2.7e+02 Score=21.50 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHh
Q 019997 31 TVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNL 77 (332)
Q Consensus 31 ~~a~~l~~~~~l~~Pii~~l~~l~~~llg~~~~~~ls~eEL~~lv~~ 77 (332)
+++.|+.+|..+..|+-.++..... .+.+..+|.+|.+.|-++
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk----~~~~~gLs~~d~~~L~~L 47 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSK----WKSSQGLSEEDEQRLQEL 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCHHHHHHHHHH
Confidence 4566666666666666444443332 233455777776666554
No 216
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=20.85 E-value=47 Score=32.52 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=17.0
Q ss_pred CHHHHHHHHHhCCCcEEEEEEcCCCC
Q 019997 188 PLYEILNEFQKGHSHMAVVVRQYNKN 213 (332)
Q Consensus 188 ~l~eaL~~M~~~~~~~a~VVDEyG~~ 213 (332)
.+..+|+.- .+...|++|+|+|++
T Consensus 17 lL~~lL~~~--~g~kiAVIVNEfGEv 40 (323)
T COG0523 17 LLNHLLANR--DGKKIAVIVNEFGEV 40 (323)
T ss_pred HHHHHHhcc--CCCcEEEEEecCccc
Confidence 344444443 368999999999986
Done!