BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019999
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TEF|A Chain A, Crystal Structure Of The Periplasmic
           Catecholate-Siderophore Binding Protein Vctp From Vibrio
           Cholerae
          Length = 292

 Score = 31.6 bits (70), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 17/61 (27%)

Query: 159 SGYGQKPEYESGYGGKPGYESGYGS----------KPEFESGYGRKPDMSPATGVSMMIG 208
             +G +P   S + G P Y + Y S          +P+FE+ Y +KPD+       ++IG
Sbjct: 34  DSFGIEPVAVSKFDGTPDYLAKYKSDKYPSAGSLFEPDFETIYTQKPDL-------IVIG 86

Query: 209 P 209
           P
Sbjct: 87  P 87


>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
          Length = 390

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 54  PGRPQPQPAYGFQPGMGRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGK-RPESEEYGS 112
           PGRP+P  A  + PG  RPEP  +G   +  +   + RPDS    SG+G  RP S ++G+
Sbjct: 335 PGRPEPGSAGTWNPG--RPEPGSAGTWNTGSSGSSSFRPDS----SGHGNIRPSSPDWGT 388


>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
           Spectrin
          Length = 214

 Score = 28.1 bits (61), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 105 PESEEYGSGY-GRKPDSEVHGSGYGRRPESGESGFGGRTESEY 146
           PE+E+    + G K + + H   Y R  ESGE    G+T+ EY
Sbjct: 33  PEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEY 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,255,614
Number of Sequences: 62578
Number of extensions: 559439
Number of successful extensions: 709
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 20
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)