Query 019999
Match_columns 332
No_of_seqs 56 out of 58
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 06:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0921 Dosage compensation co 90.0 2.8 6E-05 47.0 11.0 17 123-139 1203-1220(1282)
2 KOG3875 Peroxisomal biogenesis 78.3 8.7 0.00019 38.5 7.5 14 35-48 11-24 (362)
3 COG3059 Predicted membrane pro 25.6 65 0.0014 30.0 2.8 24 302-328 155-178 (182)
4 PF08035 Op_neuropeptide: Opio 24.0 42 0.0009 23.5 1.0 21 288-308 2-24 (31)
5 COG3889 Predicted solute bindi 20.8 55 0.0012 36.4 1.6 7 38-44 835-841 (872)
6 PF04224 DUF417: Protein of un 16.5 1.3E+02 0.0029 27.7 2.8 24 301-327 151-174 (175)
7 COG3889 Predicted solute bindi 9.9 1.8E+02 0.0038 32.7 1.9 10 34-43 835-844 (872)
8 KOG1316 Argininosuccinate lyas 9.8 1.7E+02 0.0036 30.5 1.6 44 276-319 291-351 (464)
9 PRK13896 cobyrinic acid a,c-di 9.7 1.4E+02 0.003 30.2 1.0 31 295-325 103-134 (433)
10 PF07054 Pericardin_rpt: Peric 9.2 3.5E+02 0.0075 19.5 2.5 26 60-89 1-26 (34)
No 1
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.03 E-value=2.8 Score=46.97 Aligned_cols=17 Identities=41% Similarity=0.833 Sum_probs=7.6
Q ss_pred CCC-CCCCCCCCCCCCCC
Q 019999 123 HGS-GYGRRPESGESGFG 139 (332)
Q Consensus 123 YGS-GYGrk~e~egSGYG 139 (332)
||| |||....+-..+||
T Consensus 1203 ygsGGYGgsa~~~~~~~G 1220 (1282)
T KOG0921|consen 1203 YGSGGYGGSAPSARANYG 1220 (1282)
T ss_pred cCCCCCCCCCCCCCCCcc
Confidence 455 66654333333333
No 2
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.30 E-value=8.7 Score=38.53 Aligned_cols=14 Identities=21% Similarity=0.064 Sum_probs=8.7
Q ss_pred eecccCCCCCCCCc
Q 019999 35 LSITSTAPTPDQSL 48 (332)
Q Consensus 35 l~~tsts~t~~~~l 48 (332)
--||.+.+.+.+|.
T Consensus 11 p~n~~~~pgea~P~ 24 (362)
T KOG3875|consen 11 PENTRTNPGEAGPS 24 (362)
T ss_pred hhhhcCCCcccCCC
Confidence 33666777666664
No 3
>COG3059 Predicted membrane protein [Function unknown]
Probab=25.63 E-value=65 Score=30.00 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHhhhh
Q 019999 302 MVMRDVVMMMNIAAGLMSMAMDARRRY 328 (332)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (332)
.|..|+.|+ |.+||.+|-||+|-+
T Consensus 155 lvlKDilml---Agal~v~~~~a~r~l 178 (182)
T COG3059 155 LVLKDILML---AGALMVAADDANRIL 178 (182)
T ss_pred hhHHHHHHH---HHHHHHHHhhHHHhh
Confidence 577898874 789999999999865
No 4
>PF08035 Op_neuropeptide: Opioids neuropeptide; InterPro: IPR013532 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. This region corresponds to the conserved YGG motif that is found in a wide variety of opioid neuropeptides such as enkephalin
Probab=24.03 E-value=42 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=17.6
Q ss_pred cccccc--cCcCCceehhhhHHH
Q 019999 288 GGLMTK--KGIRSPVVMVMRDVV 308 (332)
Q Consensus 288 ~~~~~~--~~~~~~~~~~~~~~~ 308 (332)
||+|+. .-...|.|.+.|+|+
T Consensus 2 GGFM~s~~e~s~~PLvtlfkn~i 24 (31)
T PF08035_consen 2 GGFMKSWDERSHKPLVTLFKNVI 24 (31)
T ss_pred CccccccccccCCchHHHHHHHH
Confidence 789988 666789999999975
No 5
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=20.79 E-value=55 Score=36.37 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=2.6
Q ss_pred ccCCCCC
Q 019999 38 TSTAPTP 44 (332)
Q Consensus 38 tsts~t~ 44 (332)
|+|.|+|
T Consensus 835 TtTtTsp 841 (872)
T COG3889 835 TTTTTSP 841 (872)
T ss_pred ceeeecc
Confidence 3333333
No 6
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=16.47 E-value=1.3e+02 Score=27.71 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=19.8
Q ss_pred ehhhhHHHHHHHHHHHHHHHHhhHhhh
Q 019999 301 VMVMRDVVMMMNIAAGLMSMAMDARRR 327 (332)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (332)
-.|+.|++|+ |++++.++-|+||-
T Consensus 151 ~fllKDivlL---a~~l~~~~~~~~r~ 174 (175)
T PF04224_consen 151 RFLLKDIVLL---AASLVLLSDSAKRY 174 (175)
T ss_pred chHHHHHHHH---HHHHHHHHHHHHhh
Confidence 4789999985 88999999888873
No 7
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=9.89 E-value=1.8e+02 Score=32.67 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=4.0
Q ss_pred eeecccCCCC
Q 019999 34 KLSITSTAPT 43 (332)
Q Consensus 34 ~l~~tsts~t 43 (332)
|...|||+.|
T Consensus 835 TtTtTsps~t 844 (872)
T COG3889 835 TTTTTSPSQT 844 (872)
T ss_pred ceeeeccccc
Confidence 3333444433
No 8
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=9.78 E-value=1.7e+02 Score=30.47 Aligned_cols=44 Identities=43% Similarity=0.627 Sum_probs=33.8
Q ss_pred hhccccccc--ccc----cccccccCcCC-----------ceehhhhHHHHHHHHHHHHHH
Q 019999 276 RSMENLRGS--RVM----GGLMTKKGIRS-----------PVVMVMRDVVMMMNIAAGLMS 319 (332)
Q Consensus 276 ~~~~~~~~~--~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 319 (332)
.|||-|||. ||. |=|||-|||-+ |+.-+..-|.-++.|++|+.+
T Consensus 291 DslELlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDKep~Fds~~tv~~~l~v~tgv~s 351 (464)
T KOG1316|consen 291 DSLELLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDKEPLFDSSKTVSDSLQVATGVIS 351 (464)
T ss_pred CHHHHhccccceehhhhHHHHHHhcCCccccccchhhhhhHHHhhHHHHHHHHHHHHHHhh
Confidence 578888885 554 45689999965 677777777788899999876
No 9
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=9.73 E-value=1.4e+02 Score=30.23 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.1
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH-HhhHh
Q 019999 295 GIRSPVVMVMRDVVMMMNIAAGLMSM-AMDAR 325 (332)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 325 (332)
-+..|||+|.+.-.+..|||+-|..+ ..|.+
T Consensus 103 ~l~~PviLVv~~~~g~~s~aa~l~g~~~~~~~ 134 (433)
T PRK13896 103 ALDLPVVLVVDAKAGMESVAATALGFRAYADR 134 (433)
T ss_pred HHCCCEEEEEcCcccHHHHHHHHHHHHHHHHh
Confidence 35679999999999999999988886 55543
No 10
>PF07054 Pericardin_rpt: Pericardin like repeat; InterPro: IPR009765 This entry represents a repeated sequence of around 34 residues in length, which is found in multiple copies in Drosophila pericardin and other extracellular matrix proteins [, ].
Probab=9.16 E-value=3.5e+02 Score=19.50 Aligned_cols=26 Identities=38% Similarity=0.745 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 019999 60 QPAYGFQPGMGRPEPYGSGRPESEYASGYA 89 (332)
Q Consensus 60 rPaYGf~P~~e~~~~YGyG~~eseYGsGYG 89 (332)
+|.||.+|+...+. |.-++-||...|
T Consensus 1 QpgyG~QpGvggQ~----g~gQpGYg~QPG 26 (34)
T PF07054_consen 1 QPGYGSQPGVGGQT----GAGQPGYGTQPG 26 (34)
T ss_pred CCccccCCcccccc----CCCCCccccCCc
Done!