Query 019999
Match_columns 332
No_of_seqs 56 out of 58
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 10:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ep8_B Urease subunit beta; al 6.5 1.7E+02 0.0059 23.9 1.2 42 245-290 44-93 (101)
2 1kdl_A YOPD protein; yersinia, 5.2 2.6E+02 0.009 18.2 1.2 10 303-312 3-12 (26)
3 1ueo_A Penaeidin-3A, penaeidin 4.8 3.4E+02 0.012 20.7 1.9 16 53-68 6-21 (63)
4 4ubp_B Protein (urease (chain 4.0 3.2E+02 0.011 23.1 1.3 42 245-290 50-99 (126)
5 4ac7_B Urease subunit beta; hy 4.0 3.2E+02 0.011 23.1 1.3 42 245-290 50-99 (126)
6 2kvt_A Uncharacterized protein 3.7 3E+02 0.01 21.3 0.8 8 321-328 50-57 (71)
7 1xg2_B Pectinesterase inhibito 3.5 5.3E+02 0.018 19.4 2.0 26 295-320 124-149 (153)
8 2k9p_A Pheromone alpha factor 3.0 9.7E+02 0.033 18.3 3.0 29 290-320 41-69 (80)
9 2cj4_A Invertase inhibitor; pr 2.9 8.7E+02 0.03 18.3 2.7 26 295-320 123-148 (150)
10 1x91_A Invertase/pectin methyl 2.8 6.5E+02 0.022 19.0 1.9 26 295-320 124-149 (153)
No 1
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=6.46 E-value=1.7e+02 Score=23.92 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=30.7
Q ss_pred cCCCcceeecccccCCCcccccccccccceeh--------hccccccccccccc
Q 019999 245 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGL 290 (332)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 290 (332)
-.||...-.|...+|| .||-.|||||-- .+-.+.|.|+.=|+
T Consensus 44 E~N~aL~FDR~~A~G~----RLdIpAGTavRFEPG~~r~V~LV~~~G~r~v~Gf 93 (101)
T 4ep8_B 44 EVNPALKFDRQQAAGY----RLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGF 93 (101)
T ss_dssp GSCTTEESCTTTTTTE----EECSSTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred HcCcceeecHhhccCc----eecccCCCeEeeCCCCeEEEEEEEccCceEEEcC
Confidence 3689999999999987 578899999831 23356777766554
No 2
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.20 E-value=2.6e+02 Score=18.16 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=8.1
Q ss_pred hhhHHHHHHH
Q 019999 303 VMRDVVMMMN 312 (332)
Q Consensus 303 ~~~~~~~~~~ 312 (332)
.|+||+-+|.
T Consensus 3 fMkDvlql~q 12 (26)
T 1kdl_A 3 FMKDVLRLIE 12 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899998875
No 3
>1ueo_A Penaeidin-3A, penaeidin-3; helix, coil-helix-coil, proline-rich, cysteine-rich, disulfide bond, antibiotic; NMR {Litopenaeus vannamei} SCOP: j.107.1.1
Probab=4.82 E-value=3.4e+02 Score=20.67 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 019999 53 YPGRPQPQPAYGFQPG 68 (332)
Q Consensus 53 ~~~rpKPrPaYGf~P~ 68 (332)
-|.+|-|||-|+.+|-
T Consensus 6 GyTrP~pRPp~~~rPv 21 (63)
T 1ueo_A 6 GYARPIPRPPPFVRPL 21 (63)
T ss_dssp CSSSSSCCCCCCCCCC
T ss_pred CcCCcCCCCCCCCCCc
Confidence 3678999998865664
No 4
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=3.96 E-value=3.2e+02 Score=23.07 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=31.6
Q ss_pred cCCCcceeecccccCCCcccccccccccceeh--------hccccccccccccc
Q 019999 245 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGL 290 (332)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 290 (332)
-.||...-.|...+|| .||-.|||||-- .+-.+.|.|+.=|+
T Consensus 50 E~N~aL~FDR~~A~G~----RLdIpAGTavRFEPG~~k~V~LV~~~G~r~v~G~ 99 (126)
T 4ubp_B 50 EVNKELLFDRAEGIGR----RLNIPSGTAARFEPGEEMEVELTELGGNREVFGI 99 (126)
T ss_dssp GSCTTEESCGGGGTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred hcCchhhccHhhhcCc----cccccCCCeEeeCCCCeEEEEEEEccCCeEEeCc
Confidence 4699999999999987 578899999731 34457788776554
No 5
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=3.96 E-value=3.2e+02 Score=23.07 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=31.6
Q ss_pred cCCCcceeecccccCCCcccccccccccceeh--------hccccccccccccc
Q 019999 245 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGL 290 (332)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 290 (332)
-.||...-.|...+|| .||-.|||||-- .+-.+.|.|+.=|+
T Consensus 50 E~N~aL~FDR~~A~G~----RLdIpAGTavRFEPG~~k~V~LV~~~G~r~v~G~ 99 (126)
T 4ac7_B 50 EVNKELLFDRAEGIGR----RLNIPSGTAARFEPGEEMEVELTELGGNREVFGI 99 (126)
T ss_dssp GSCTTEESCGGGGTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred hcCchhhccHhhhcCc----cccccCCCeEeeCCCCeEEEEEEEccCCeEEeCc
Confidence 4699999999999987 578899999731 34457788776554
No 6
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=3.74 E-value=3e+02 Score=21.29 Aligned_cols=8 Identities=75% Similarity=1.319 Sum_probs=4.8
Q ss_pred HhhHhhhh
Q 019999 321 AMDARRRY 328 (332)
Q Consensus 321 ~~~~~~~~ 328 (332)
|+||.+||
T Consensus 50 A~DAK~RY 57 (71)
T 2kvt_A 50 AMDAKKRY 57 (71)
T ss_dssp HHHHHHHH
T ss_pred HhhhHhhh
Confidence 55666665
No 7
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=3.48 E-value=5.3e+02 Score=19.42 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=20.9
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH
Q 019999 295 GIRSPVVMVMRDVVMMMNIAAGLMSM 320 (332)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (332)
.+++||.-.+.++..+..|+..|..+
T Consensus 124 ~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1xg2_B 124 NIPTQLHQADLKLEDLCDIVLVISNL 149 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788887888898899998887764
No 8
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=2.98 E-value=9.7e+02 Score=18.27 Aligned_cols=29 Identities=10% Similarity=0.440 Sum_probs=20.4
Q ss_pred cccccCcCCceehhhhHHHHHHHHHHHHHHH
Q 019999 290 LMTKKGIRSPVVMVMRDVVMMMNIAAGLMSM 320 (332)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (332)
+.|| .-|+|| .++.-+.+.+||.-.++..
T Consensus 41 lltk-krrspi-F~lN~~~L~l~iirs~l~~ 69 (80)
T 2k9p_A 41 ITSR-SRKTPI-FIINQVSLFLIILHSALYF 69 (80)
T ss_dssp HHTC-CSCCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-cccChh-hHHHHHHHHHHHHHHHHHH
Confidence 5677 468887 6677788888887666543
No 9
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=2.85 E-value=8.7e+02 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=19.9
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH
Q 019999 295 GIRSPVVMVMRDVVMMMNIAAGLMSM 320 (332)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (332)
+.++||.-...++..|..|+..|..+
T Consensus 123 ~~~~pl~~~~~~~~~l~s~aLaii~~ 148 (150)
T 2cj4_A 123 GSKSPFSALNIAVHELSDVGRAIVRN 148 (150)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 44788777788888888888877653
No 10
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=2.78 E-value=6.5e+02 Score=19.04 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=20.6
Q ss_pred CcCCceehhhhHHHHHHHHHHHHHHH
Q 019999 295 GIRSPVVMVMRDVVMMMNIAAGLMSM 320 (332)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (332)
.+++||.-.+.++..+..++..|+.+
T Consensus 124 ~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1x91_A 124 SVDSSVVNNSKTIKNLCGIALVISNM 149 (153)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 57788887888888888888877654
Done!