Query 019999
Match_columns 332
No_of_seqs 56 out of 58
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 10:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019999.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019999hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cj4a1 a.29.6.1 (A:4-150) Inv 8.4 97 0.007 21.9 2.5 28 294-321 119-146 (147)
2 d4ubpb_ b.85.3.1 (B:) Urease, 4.5 1.3E+02 0.0095 23.3 1.3 42 245-290 46-95 (122)
3 d1x91a_ a.29.6.1 (A:) Pectin m 4.5 1.7E+02 0.013 20.4 1.9 31 290-320 115-145 (149)
4 d1by5a_ f.4.3.3 (A:) Ferric hy 4.1 1E+02 0.0075 23.8 0.3 17 257-273 125-141 (697)
5 d1kmoa_ f.4.3.3 (A:) Outer mem 3.2 1.3E+02 0.0093 23.3 0.2 17 256-272 124-140 (661)
6 d1ejxb_ b.85.3.1 (B:) Urease, 3.2 1.3E+02 0.0098 22.6 0.2 41 246-290 45-93 (101)
7 d1fepa_ f.4.3.3 (A:) Ferric en 3.1 1.4E+02 0.011 23.0 0.4 16 257-272 125-140 (714)
8 d1e9ya1 b.85.3.1 (A:106-238) U 3.1 2.1E+02 0.015 22.4 1.3 42 245-290 44-93 (133)
9 d2vjma1 c.123.1.1 (A:2-428) Fo 3.0 5.8E+02 0.042 20.4 4.2 83 236-329 104-190 (427)
10 d2af4c1 c.77.1.5 (C:2-333) Pho 2.8 1.9E+02 0.014 24.2 0.8 54 260-315 262-324 (332)
No 1
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=8.45 E-value=97 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.9
Q ss_pred cCcCCceehhhhHHHHHHHHHHHHHHHH
Q 019999 294 KGIRSPVVMVMRDVVMMMNIAAGLMSMA 321 (332)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (332)
++..+|+.-..+.|..+.+||..+..+.
T Consensus 119 ~~~~spl~~~~~~~~~l~~ial~i~~~L 146 (147)
T d2cj4a1 119 KGSKSPFSALNIAVHELSDVGRAIVRNL 146 (147)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667998888899999999998887653
No 2
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=4.46 E-value=1.3e+02 Score=23.32 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=31.5
Q ss_pred cCCCcceeecccccCCCcccccccccccceeh--------hccccccccccccc
Q 019999 245 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGL 290 (332)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 290 (332)
-.||...-.|....|| .||-.|||||-- .+-.+.|.|+.=|+
T Consensus 46 E~N~aL~FDR~~a~G~----RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~ 95 (122)
T d4ubpb_ 46 EVNKELLFDRAEGIGR----RLNIPSGTAARFEPGEEMEVELTELGGNREVFGI 95 (122)
T ss_dssp GSCTTEESCGGGGTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred hcCccccccHHHHhhc----ccCCCCCCeEEECCCCeEEEEEEEcCCceEEEcC
Confidence 3689999999999987 577889999731 34467888876554
No 3
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.46 E-value=1.7e+02 Score=20.39 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=23.4
Q ss_pred cccccCcCCceehhhhHHHHHHHHHHHHHHH
Q 019999 290 LMTKKGIRSPVVMVMRDVVMMMNIAAGLMSM 320 (332)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (332)
+-..+++++|++-..+++.-+.+|+..|..+
T Consensus 115 f~~~~~~~s~l~~~~~~~~~l~~ialai~~~ 145 (149)
T d1x91a_ 115 VKRLRSVDSSVVNNSKTIKNLCGIALVISNM 145 (149)
T ss_dssp HTTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567888888888888899998877665
No 4
>d1by5a_ f.4.3.3 (A:) Ferric hydroxamate uptake receptor FhuA {Escherichia coli [TaxId: 562]}
Probab=4.10 E-value=1e+02 Score=23.84 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.2
Q ss_pred ccCCCcccccccccccc
Q 019999 257 SRGMGGNLNLNTKAGTA 273 (332)
Q Consensus 257 ~~~~~~~~~~~~~~~~~ 273 (332)
+.++||-+|+.||.++.
T Consensus 125 ~~a~gGvIni~Tk~~~~ 141 (697)
T d1by5a_ 125 KSSPGGLLNMVSKRPTT 141 (697)
T ss_dssp SCCTTEEEEEEECCCCS
T ss_pred CCCccEEEEEEECCCCC
Confidence 57899999999997653
No 5
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia coli [TaxId: 562]}
Probab=3.25 E-value=1.3e+02 Score=23.26 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.0
Q ss_pred cccCCCccccccccccc
Q 019999 256 TSRGMGGNLNLNTKAGT 272 (332)
Q Consensus 256 ~~~~~~~~~~~~~~~~~ 272 (332)
-+..+||-+|+.||.+.
T Consensus 124 G~~a~gGvIni~Tk~~~ 140 (661)
T d1kmoa_ 124 GPQSVGGVVNFVTRAIP 140 (661)
T ss_dssp CSSGGGCEEEEEECCCC
T ss_pred CCCCccEEEEEEEcCcc
Confidence 35778999999999864
No 6
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=3.16 E-value=1.3e+02 Score=22.60 Aligned_cols=41 Identities=34% Similarity=0.505 Sum_probs=29.5
Q ss_pred CCCcceeecccccCCCcccccccccccceeh--------hccccccccccccc
Q 019999 246 MNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGL 290 (332)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 290 (332)
.||...-.|....|| .||-.|||||-- .+-.+.|.|+.=|+
T Consensus 45 ~N~aL~FDR~~A~G~----RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~Gf 93 (101)
T d1ejxb_ 45 VNPALKFDRQQAAGY----RLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGF 93 (101)
T ss_dssp SCTTEESCHHHHTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred cCccccccHHHhcCc----eeCccCCCEEeeCCCCcEEEEEEEccCceEEEcC
Confidence 688888889988887 577889999731 23456777765443
No 7
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=1.4e+02 Score=23.03 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=13.7
Q ss_pred ccCCCccccccccccc
Q 019999 257 SRGMGGNLNLNTKAGT 272 (332)
Q Consensus 257 ~~~~~~~~~~~~~~~~ 272 (332)
+.++||-+|+.||.++
T Consensus 125 ~~a~gGvIni~Tk~~~ 140 (714)
T d1fepa_ 125 NGAAGGVVNIITKKGS 140 (714)
T ss_dssp TTCSSEEEEEEECCCC
T ss_pred CCCccEEEEEEECCCC
Confidence 5679999999999875
No 8
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=3.06 E-value=2.1e+02 Score=22.43 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=30.7
Q ss_pred cCCCcceeecccccCCCcccccccccccceeh--------hccccccccccccc
Q 019999 245 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGL 290 (332)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 290 (332)
-.||.....|....|| .||-.|||||-- .+-.+.|.|+.=|+
T Consensus 44 E~N~aL~FDR~~a~G~----RLdIpaGtavRFEPG~~k~V~LV~~~G~r~v~G~ 93 (133)
T d1e9ya1 44 EVNRCLDFDREKTFGK----RLDIAAGTAVRFEPGEEKSVELIDIGGNRRIFGF 93 (133)
T ss_dssp GSCTTEESCGGGGTTE----EECSSTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred hcCccccccHHHHhhc----ccCCCCCCeEEECCCCeEEEEEEEecCceEEecC
Confidence 3688888899999887 577889999731 34467787766554
No 9
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}
Probab=2.96 E-value=5.8e+02 Score=20.40 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=52.1
Q ss_pred ccccccccccCCCcceeecccccCCCcccccccccccceehhcccccccccccccccccCcC--Cce--ehhhhHHHHHH
Q 019999 236 MNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIR--SPV--VMVMRDVVMMM 311 (332)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ 311 (332)
+.|+.-.-+..||.+|-...|--|-.|-.. +-.+-..++.. ++|+|..-|.. .|+ -+.+-|..--+
T Consensus 104 lGL~~~~l~~~NP~LI~~sisgfG~~GP~~-~~~~~d~~~qA---------~sG~~~~~G~~~~~P~~~~~~~~D~~ag~ 173 (427)
T d2vjma1 104 MGFTWEYIQELNPRVILASVKGYAEGHANE-HLKVYENVAQC---------SGGAAATTGFWDGPPTVSGAALGDSNSGM 173 (427)
T ss_dssp TTCCHHHHHHHCTTCEEEEEESSCTTSTTT-TCCCCHHHHHH---------HTTTTTTSSCTTSCCCCCSSCTTTHHHHH
T ss_pred cCCCchhhhhhCCccceeeeeccccccccc-ccccccccccc---------cccchhhccCCCCCCcccccchhhhhccc
Confidence 455555667899999999999888877542 33343344432 35666555532 243 34566888777
Q ss_pred HHHHHHHHHHhhHhhhhc
Q 019999 312 NIAAGLMSMAMDARRRYG 329 (332)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ 329 (332)
..|.++++ |+-+|+|-|
T Consensus 174 ~aa~~ila-AL~~R~~TG 190 (427)
T d2vjma1 174 HLMIGILA-ALEIRHKTG 190 (427)
T ss_dssp HHHHHHHH-HHHHHHHHS
T ss_pred ccccchhh-hHHHHhccC
Confidence 77777664 555666644
No 10
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]}
Probab=2.80 E-value=1.9e+02 Score=24.23 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=36.4
Q ss_pred CCccccc----ccccccceehhcccccccccccccccccCcCCceehhhh-----HHHHHHHHHH
Q 019999 260 MGGNLNL----NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR-----DVVMMMNIAA 315 (332)
Q Consensus 260 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 315 (332)
+.|+-|+ |-.+|......+..|-+..+.|-++ -|.+.||+.+-| |++.+.-||+
T Consensus 262 v~G~AnvLIfPnl~agNi~yK~l~~~~~a~~~Gpil--~G~~~Pv~~~sR~~s~~~i~~~~alaa 324 (332)
T d2af4c1 262 VAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPIT--QGLAKPINDLSRGCSDEDIVGAVAITC 324 (332)
T ss_dssp STTSCCEEECSSHHHHHHHHHHHHHTSCCEEEEEEE--ESBSSCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEeCChHHhHHHHHHHHHhcCCeEEcchh--hcCCCCEEECCCCCCHHHHHHHHHHHH
Confidence 4555554 4456666677778888888777655 388999999876 5555554443
Done!