BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020000
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGG
LRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVES
IVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFV
GFDFLKEVADARKQKKDTGQVGSWGNRGEISTLNNFSCVILGGLVAEHLVFGHSEGHYSD
INKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI
LTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG

High Scoring Gene Products

Symbol, full name Information P value
AT1G54680 protein from Arabidopsis thaliana 9.1e-45
AT5G27290 protein from Arabidopsis thaliana 1.8e-44
AT1G56180 protein from Arabidopsis thaliana 0.00025

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020000
        (332 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2199471 - symbol:AT1G54680 "AT1G54680" species...   471  9.1e-45   1
TAIR|locus:2181221 - symbol:AT5G27290 species:3702 "Arabi...   340  1.8e-44   2
TAIR|locus:2011861 - symbol:AT1G56180 "AT1G56180" species...   118  0.00025   1


>TAIR|locus:2199471 [details] [associations]
            symbol:AT1G54680 "AT1G54680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002684
            UniGene:At.10837 UniGene:At.71292 HOGENOM:HOG000265031
            EMBL:AK221413 IPI:IPI00529113 RefSeq:NP_175867.2
            ProteinModelPortal:Q56YB0 STRING:Q56YB0 EnsemblPlants:AT1G54680.1
            GeneID:841909 KEGG:ath:AT1G54680 TAIR:At1g54680 eggNOG:NOG298880
            InParanoid:Q56YB0 OMA:FSCVILG ProtClustDB:CLSN2699143
            Genevestigator:Q56YB0 Uniprot:Q56YB0
        Length = 223

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 105/207 (50%), Positives = 138/207 (66%)

Query:    92 ALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYL 151
             +L DSV  SIE  +++        D+V +  E     S  EED F  VQHE+GHFL GYL
Sbjct:    13 SLIDSVSRSIE--SVY-----VQEDSVRTSKEMEIKTS-PEEDWFSVVQHESGHFLVGYL 64

Query:   152 LGVLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEI 210
             LGVLP+ YEIP++EA++Q+   V GRV+FVGF+FLK+V  A +  KD   V    N+G I
Sbjct:    65 LGVLPRHYEIPTLEAVRQNVSNVTGRVEFVGFEFLKQVGAANQLMKD--DVDGQMNQGNI 122

Query:   211 S--TLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALN 268
             S  TLNNFSCVILGG+V EH++FG+SEG YSDI KL+ V +WLG+ +SE ++ +KWA  N
Sbjct:   123 SSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTESEKEAHIKWAVSN 182

Query:   269 TVLISHHHIQVRSRLAEAMALGRSIGS 295
             TV + H H + R  LAE MA  + I +
Sbjct:   183 TVSLLHSHKEARVSLAETMAKAKPIST 209


>TAIR|locus:2181221 [details] [associations]
            symbol:AT5G27290 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0030003 "cellular
            cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
            transport" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 UniGene:At.49069 UniGene:At.69944 EMBL:BT028971
            IPI:IPI00533047 RefSeq:NP_568492.1 ProteinModelPortal:Q08AA8
            STRING:Q08AA8 PaxDb:Q08AA8 PRIDE:Q08AA8 EnsemblPlants:AT5G27290.1
            GeneID:832787 KEGG:ath:AT5G27290 TAIR:At5g27290 eggNOG:NOG08023
            HOGENOM:HOG000265031 InParanoid:Q08AA8 OMA:KADSQVR PhylomeDB:Q08AA8
            ProtClustDB:CLSN2689874 Genevestigator:Q08AA8 Uniprot:Q08AA8
        Length = 341

 Score = 340 (124.7 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 73/181 (40%), Positives = 116/181 (64%)

Query:   118 VESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQD---DFTV 174
             + S+V D +  +  +  H   VQHEAGHFL  YL+G+LP+GY + S+EAL+++   +   
Sbjct:   163 IGSLVLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQA 222

Query:   175 GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISTLNNFSCVILGGLVAEHLVFGHS 234
             G   FV ++FL+EV        ++G+V +       + LN FSC+ L G+  E+L++G++
Sbjct:   223 GSA-FVDYEFLEEV--------NSGKVSA-------TMLNRFSCIALAGVATEYLLYGYA 266

Query:   235 EGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIG 294
             EG   DI+KLD + + LG+ + +ADSQV+W+ LNT+L+   H   RS+LA+AM+ G S+G
Sbjct:   267 EGGLDDISKLDGLVKSLGFTQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVG 326

Query:   295 S 295
             S
Sbjct:   327 S 327

 Score = 145 (56.1 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 38/80 (47%), Positives = 48/80 (60%)

Query:    27 RRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRXXXXXXXXXXXXX 86
             RRQAL++VD +LS G+ + ALSLVK LQ KP  GLR FGAA+QVP+R             
Sbjct:    42 RRQALEQVDSKLSSGDERAALSLVKDLQGKP-DGLRCFGAARQVPQRLYTLEELKLNGIN 100

Query:    87 XXXXRALFDSVMESIERCNL 106
                  +  D+ + SIER NL
Sbjct:   101 AASLLSPTDTTLGSIER-NL 119


>TAIR|locus:2011861 [details] [associations]
            symbol:AT1G56180 "AT1G56180" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] EMBL:CP002684 EMBL:AC069159
            EMBL:BT001014 IPI:IPI00523261 PIR:C96603 RefSeq:NP_564711.1
            UniGene:At.28711 ProteinModelPortal:Q9C7J3 STRING:Q9C7J3
            PRIDE:Q9C7J3 EnsemblPlants:AT1G56180.1 GeneID:842071
            KEGG:ath:AT1G56180 TAIR:At1g56180 InParanoid:Q9C7J3 OMA:NDENLFR
            PhylomeDB:Q9C7J3 ProtClustDB:CLSN2688864 Genevestigator:Q9C7J3
            Uniprot:Q9C7J3
        Length = 389

 Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
 Identities = 41/164 (25%), Positives = 70/164 (42%)

Query:   139 VQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDT 198
             V HEAGH L  YL+G   +G  +  V A++         QF       E+A+ R     +
Sbjct:   233 VVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESEIAEGRL----S 288

Query:   199 GQVGSWGNRGEISTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLG--YNKS 256
             G           S+ + +S V+  G+ AE LV+G +EG  +D N    +   L    + +
Sbjct:   289 G-----------SSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVA 337

Query:   257 EADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 300
             +  +Q +W+ L +  +   H        EA+ +G  +     +I
Sbjct:   338 QMSNQARWSVLQSYNLLKWHKAAHRAAVEALQVGSPLSIVIRRI 381


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       315   0.00082  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.36u 0.12s 23.48t   Elapsed:  00:00:01
  Total cpu time:  23.36u 0.12s 23.48t   Elapsed:  00:00:01
  Start:  Mon May 20 22:28:31 2013   End:  Mon May 20 22:28:32 2013

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