BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020000
         (332 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6IUF8|L_MACHU RNA-directed RNA polymerase L OS=Machupo virus GN=L PE=3 SV=1
          Length = 2209

 Score = 37.0 bits (84), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 23/140 (16%)

Query: 14   VAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGL-RGFGAAKQVPK 72
            VA +         R + L R D  +  GN              P   L   FG  K++  
Sbjct: 914  VALAKMADNSVNTRIKNLGRADNSVKNGN-------------NPLDNLWSPFGVMKEIRA 960

Query: 73   RLSSLDESELDSKELLT--LRALFDSVMESIERCNLF--DSLDEAPSDTVESIVEDGSYV 128
             +S  +  + D   L +   + L D+V +S E+CN F  + LD  P   +   +   SY+
Sbjct: 961  EVSLHEVKDFDPDVLPSDVYKELCDAVYKSSEKCNFFLEEVLDVCPLGLLLKNLTTSSYM 1020

Query: 129  SLKEEDHFMCVQH--EAGHF 146
               EE++FMC ++    GHF
Sbjct: 1021 ---EEEYFMCFKYLLIQGHF 1037


>sp|P14751|MTR1_RHOSH Modification methylase RsrI OS=Rhodobacter sphaeroides GN=rsrIM
           PE=1 SV=1
          Length = 319

 Score = 35.4 bits (80), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 59  GGLRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTV 118
            G R   A ++  ++ SS  ES+L S E+ T R ++D        C+  D+L + P D+V
Sbjct: 9   AGHRAMNALRKSGQKHSS--ESQLGSSEIGTTRHVYDV-------CDCLDTLAKLPDDSV 59

Query: 119 ESIVEDGSY-VSLKEEDHFM 137
           + I+ D  Y + L + D  M
Sbjct: 60  QLIICDPPYNIMLADWDDHM 79


>sp|A8G222|CBID_PROM2 Putative cobalt-precorrin-6A synthase [deacetylating]
           OS=Prochlorococcus marinus (strain MIT 9215) GN=cbiD
           PE=3 SV=1
          Length = 370

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 98  MESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPK 157
           + S+E+ +  +SL   P + +      GS V +KE+   +C+ + A   L   LL ++P+
Sbjct: 81  IASLEKISFENSLQRVPINIIA-----GSGVGIKEDTSEICISNFAKEVLYENLLDIIPE 135

Query: 158 GYEI 161
           G+ +
Sbjct: 136 GFNL 139


>sp|B9L3S8|FTSH2_THERP ATP-dependent zinc metalloprotease FtsH 2 OS=Thermomicrobium roseum
           (strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH2 PE=3 SV=1
          Length = 699

 Score = 33.1 bits (74), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 49/185 (26%)

Query: 101 IERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYL--------- 151
           ++R +  ++LD+    T  S++       + +E+  +   HEAGH +  Y          
Sbjct: 479 VDRSDFEEALDKMLLGTTRSLL-------MSQEERRLVAYHEAGHAVVAYFTPGADPLRK 531

Query: 152 LGVLPKGYEI-PSVEALKQDDFTVGRVQFVG-------------FDFLKEVADARKQKKD 197
           + ++P+G  +  +V+A ++D F   R Q +G               F +    A+   K+
Sbjct: 532 ISIVPRGRALGVTVQAPEEDRFNYTRNQLLGRLAVLLGGRAAEQLVFHEVTTGAQNDLKE 591

Query: 198 TGQ-----VGSWGNRGEISTLNNFSCVILGGLVAEHLVFG------HSEGHYSDINKLDK 246
             Q     VG WG   E+         I  GL  +H+  G      HS G  S +++ D+
Sbjct: 592 ATQLARRMVGLWGMSEELGP-------IYLGLGEQHVFLGREIVQDHSIG-TSTLDRADQ 643

Query: 247 VFQWL 251
             Q L
Sbjct: 644 AVQRL 648


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,212,687
Number of Sequences: 539616
Number of extensions: 4829588
Number of successful extensions: 13941
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13938
Number of HSP's gapped (non-prelim): 10
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)