Query 020000
Match_columns 332
No_of_seqs 156 out of 824
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di4_A Zinc protease, cell div 100.0 1.6E-34 5.5E-39 268.2 15.8 151 127-303 8-202 (238)
2 2ce7_A Cell division protein F 99.9 1.6E-25 5.4E-30 224.5 16.5 151 127-302 264-458 (476)
3 2dhr_A FTSH; AAA+ protein, hex 99.9 1E-24 3.5E-29 219.8 14.5 165 117-308 267-474 (499)
4 3b4r_A Putative zinc metallopr 94.6 0.018 6E-07 52.5 3.0 27 137-163 50-76 (224)
5 2jsd_A Matrix metalloproteinas 70.2 1.8 6E-05 36.3 1.8 16 133-148 106-121 (160)
6 1q08_A Zn(II)-responsive regul 68.6 17 0.00059 27.6 7.1 63 239-301 1-73 (99)
7 2xs4_A Karilysin protease; hyd 68.1 2.1 7E-05 36.4 1.8 15 133-147 113-127 (167)
8 3gp4_A Transcriptional regulat 67.2 25 0.00085 29.2 8.3 65 238-302 43-116 (142)
9 3gpv_A Transcriptional regulat 66.6 16 0.00054 30.6 7.0 66 238-303 57-131 (148)
10 2ovx_A Matrix metalloproteinas 65.8 2 6.9E-05 36.4 1.3 15 133-147 109-123 (159)
11 1hy7_A Stromelysin-1, MMP-3; m 65.1 2.9 9.8E-05 35.8 2.1 16 133-148 111-126 (173)
12 1cge_A Fibroblast collagenase; 62.3 2.6 8.9E-05 36.0 1.3 14 134-147 110-123 (168)
13 1hv5_A Stromelysin 3; inhibiti 61.5 2.7 9.2E-05 35.7 1.3 15 133-147 111-125 (165)
14 1i76_A MMP-8;, neutrophil coll 58.4 4.1 0.00014 34.6 1.9 16 133-148 110-125 (163)
15 3cqb_A Probable protease HTPX 54.6 6.9 0.00024 31.0 2.5 20 130-149 78-97 (107)
16 1slm_A Stromelysin-1; hydrolas 51.3 5.4 0.00019 36.6 1.6 15 134-148 194-208 (255)
17 1y93_A Macrophage metalloelast 51.3 5 0.00017 34.0 1.3 15 133-147 106-120 (159)
18 2y6d_A Matrilysin; hydrolase; 51.1 6.1 0.00021 34.0 1.8 16 133-148 113-128 (174)
19 3ayu_A 72 kDa type IV collagen 50.7 5.9 0.0002 33.9 1.6 15 134-148 113-127 (167)
20 1rm8_A MMP-16, matrix metallop 50.6 6.3 0.00022 33.4 1.8 17 132-148 114-130 (169)
21 3ezq_A Tumor necrosis factor r 48.6 51 0.0017 27.2 6.9 48 242-289 21-78 (115)
22 1sat_A Serratia protease; para 45.8 8.9 0.00031 38.2 2.3 16 133-148 168-183 (471)
23 1g9k_A Serralysin; beta jelly 44.8 9.5 0.00032 38.0 2.3 16 134-149 162-177 (463)
24 1kap_P Alkaline protease; calc 43.5 10 0.00035 37.9 2.3 15 134-148 178-192 (479)
25 1c7k_A NCNP, zinc endoprotease 43.4 11 0.00037 31.8 2.1 14 134-147 76-89 (132)
26 1ich_A TNF-1, tumor necrosis f 42.5 57 0.0019 26.8 6.3 60 243-303 27-97 (112)
27 1k7i_A PROC, secreted protease 42.0 11 0.00038 37.6 2.3 16 133-148 180-195 (479)
28 2cki_A Ulilysin; metalloprotea 41.1 8.7 0.0003 35.6 1.3 18 134-151 161-178 (262)
29 1q06_A Transcriptional regulat 38.6 1.3E+02 0.0045 24.4 8.1 52 238-289 41-100 (135)
30 1r8e_A Multidrug-efflux transp 37.2 38 0.0013 29.9 4.9 65 238-302 47-114 (278)
31 3qao_A LMO0526 protein, MERR-l 37.1 45 0.0015 30.2 5.4 24 238-261 44-69 (249)
32 830c_A MMP-13, MMP-13; matrix 36.0 12 0.00041 32.2 1.3 16 133-148 111-126 (168)
33 3oq9_A Tumor necrosis factor r 34.8 39 0.0013 26.3 4.0 48 242-289 13-70 (86)
34 3hh0_A Transcriptional regulat 33.7 84 0.0029 26.1 6.1 23 238-260 45-69 (146)
35 3ma2_D Matrix metalloproteinas 31.8 16 0.00053 31.9 1.3 15 133-147 120-134 (181)
36 1fad_A Protein (FADD protein); 30.9 1.8E+02 0.006 22.1 7.5 47 243-289 27-83 (99)
37 3ba0_A Macrophage metalloelast 30.8 19 0.00064 34.5 1.8 15 134-148 106-120 (365)
38 3sks_A Putative oligoendopepti 29.3 31 0.0011 34.7 3.2 18 137-154 355-372 (567)
39 2vz4_A Tipal, HTH-type transcr 29.1 63 0.0022 25.2 4.4 49 238-286 42-92 (108)
40 1r8d_A Transcription activator 28.0 79 0.0027 24.5 4.8 50 238-287 43-94 (109)
41 4aw6_A CAAX prenyl protease 1 27.9 31 0.0011 34.7 2.8 24 129-152 323-346 (482)
42 2o36_A ThiMet oligopeptidase; 27.1 37 0.0013 35.0 3.3 18 137-154 454-471 (674)
43 3edh_A Bone morphogenetic prot 27.0 23 0.0008 31.3 1.6 35 135-170 87-124 (201)
44 3ahn_A Oligopeptidase, PZ pept 26.6 38 0.0013 33.7 3.2 17 137-153 352-368 (564)
45 2o3e_A Neurolysin; thermolysin 26.5 33 0.0011 35.4 2.8 17 137-153 470-486 (678)
46 1l6j_A Matrix metalloproteinas 26.2 20 0.00068 35.7 1.1 14 134-147 375-388 (425)
47 3lqb_A Hatching enzyme, LOC792 25.8 25 0.00087 31.1 1.6 35 135-170 93-130 (199)
48 1r42_A Angiotensin I convertin 25.1 26 0.00091 35.6 1.8 27 276-302 547-575 (615)
49 1uze_A Angiotensin converting 24.0 29 0.00098 35.3 1.8 15 137-151 343-357 (589)
50 2zhg_A Redox-sensitive transcr 23.8 1.1E+02 0.0038 25.5 5.2 52 238-289 51-111 (154)
51 1eak_A 72 kDa type IV collagen 23.3 27 0.00093 34.7 1.4 15 134-148 365-379 (421)
52 2yqf_A Ankyrin-1; death domain 23.3 1.1E+02 0.0037 24.2 4.8 34 244-277 32-69 (111)
53 3lq0_A Proastacin; metallopept 23.0 31 0.001 31.4 1.6 35 135-170 120-157 (235)
54 2x96_A Angiotensin converting 22.8 31 0.0011 35.4 1.8 27 277-303 530-558 (598)
55 3t15_A Ribulose bisphosphate c 22.4 27 0.00093 31.6 1.2 23 129-151 260-282 (293)
56 3ezq_B Protein FADD; apoptosis 22.4 3.1E+02 0.011 22.3 7.5 46 244-289 20-75 (122)
57 2o71_A Death domain-containing 22.3 3E+02 0.01 22.0 7.9 47 243-289 37-93 (115)
58 3c37_A Peptidase, M48 family; 21.6 45 0.0016 29.9 2.5 22 131-152 96-117 (253)
59 2gf5_A FADD protein; death dom 21.6 1.6E+02 0.0056 25.3 6.0 66 243-309 111-186 (191)
60 1wpn_A Manganese-dependent ino 21.3 1.9E+02 0.0064 24.2 6.2 48 215-262 137-184 (188)
61 3dte_A IRRE protein; radiotole 21.1 58 0.002 30.7 3.1 22 130-151 91-112 (301)
62 1su3_A Interstitial collagenas 20.3 36 0.0012 33.6 1.6 15 134-148 192-206 (450)
63 2kjg_A Archaeal protein SSO690 20.1 1.7E+02 0.0058 23.5 5.1 67 240-306 20-92 (99)
No 1
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=1.6e-34 Score=268.17 Aligned_cols=151 Identities=18% Similarity=0.133 Sum_probs=117.3
Q ss_pred CCCCChhHHHHHHHHHHhHHHHHHHhC--CCCCceecCchhhhcccccccceeEEechhhhHHHHHhhhhcccCCCcCCC
Q 020000 127 YVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSW 204 (332)
Q Consensus 127 ~r~ls~eer~RVA~HEAGHaLVAyLLg--~PV~kyTI~p~eal~~G~~g~gG~~f~~~e~~~~l~~~r~~~~d~~~~~s~ 204 (332)
++.+|+++|++||||||||||||++++ .||++|||+| +| ..+|+++..|+. +.+
T Consensus 8 ~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiP-----RG--~alG~t~~~P~e-------------d~~---- 63 (238)
T 2di4_A 8 HMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIP-----RG--MALGVTQQLPIE-------------DKH---- 63 (238)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC------------------------------------CC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEee-----cC--CcceEEEeCCcc-------------ccc----
Confidence 567899999999999999999999999 7999999999 23 134544444432 211
Q ss_pred CCccCHHHHHHHHHHHhhhHHHHHHHh--CC-ccchhhHHHHHHHHHHH----hCCChh---------------------
Q 020000 205 GNRGEISTLNNFSCVILGGLVAEHLVF--GH-SEGHYSDINKLDKVFQW----LGYNKS--------------------- 256 (332)
Q Consensus 205 ~~~g~~s~L~r~i~VaLAGrAAE~Lvf--G~-stGga~Dl~qat~iar~----lGmS~~--------------------- 256 (332)
..+.++|.+.++|+|||||||+|+| |+ +||++||+++||+|++. ||||++
T Consensus 64 --~~tk~~l~~~i~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~ 141 (238)
T 2di4_A 64 --IYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAV 141 (238)
T ss_dssp --CCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCC
T ss_pred --ccCHHHHHHHHHHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCcccccccccccc
Confidence 2455678888999999999999999 65 68999999999998875 899852
Q ss_pred --------HHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHhhCcH--HHHHHHHhcc
Q 020000 257 --------EADSQVK----WAALNTVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILTE 303 (332)
Q Consensus 257 --------~id~evr----~A~~~A~~LL~~hr~ale~LAeaLle~esl--~ec~~~Ie~~ 303 (332)
.+|.+++ +||.+|++||++|++.+++||++|+++||| +++.++|+..
T Consensus 142 ~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~ 202 (238)
T 2di4_A 142 DTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY 202 (238)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence 3566755 899999999999999999999999999999 6999998754
No 2
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=1.6e-25 Score=224.54 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=115.5
Q ss_pred CCCCChhHHHHHHHHHHhHHHHHHHhC--CCCCceecCchhhhcccccccceeEEechhhhHHHHHhhhhcccCCCcCCC
Q 020000 127 YVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSW 204 (332)
Q Consensus 127 ~r~ls~eer~RVA~HEAGHaLVAyLLg--~PV~kyTI~p~eal~~G~~g~gG~~f~~~e~~~~l~~~r~~~~d~~~~~s~ 204 (332)
+..++++++++++|||+||++|+++++ .|++++||.| +|. ..+|+++..|+ ++.+
T Consensus 264 ~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~p-----rg~-~alg~~~~~p~-------------~~~~---- 320 (476)
T 2ce7_A 264 SLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIP-----RGY-KALGYTLHLPE-------------EDKY---- 320 (476)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC------------------------------------CC----
T ss_pred chhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeec-----Ccc-cccceEEEcCc-------------cccc----
Confidence 346799999999999999999999998 6999999999 331 23344443333 2211
Q ss_pred CCccCHHHHHHHHHHHhhhHHHHHHHhCCc-cchhhHHHHHHHHHHH----hCCChh-----------------------
Q 020000 205 GNRGEISTLNNFSCVILGGLVAEHLVFGHS-EGHYSDINKLDKVFQW----LGYNKS----------------------- 256 (332)
Q Consensus 205 ~~~g~~s~L~r~i~VaLAGrAAE~LvfG~s-tGga~Dl~qat~iar~----lGmS~~----------------------- 256 (332)
..+.++|.+.++|+|||||||+++||+. +|++||++++|++++. ||||++
T Consensus 321 --~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (476)
T 2ce7_A 321 --LVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLR 398 (476)
T ss_dssp --SCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CC
T ss_pred --ccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccc
Confidence 2455689999999999999999999994 6999999999999875 899851
Q ss_pred --------HHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHhhCcH--HHHHHHHhc
Q 020000 257 --------EADSQVK----WAALNTVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILT 302 (332)
Q Consensus 257 --------~id~evr----~A~~~A~~LL~~hr~ale~LAeaLle~esl--~ec~~~Ie~ 302 (332)
.+|++++ .||.+|++||++|++.+++||++|+++||| +++.++++.
T Consensus 399 ~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 399 NYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 2456655 799999999999999999999999999999 688888875
No 3
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1e-24 Score=219.82 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=129.8
Q ss_pred hhhHHhhcc--cCCCCChhHHHHHHHHHHhHHHHHHHhC--CCCCceecCchhhhcccccccceeEEechhhhHHHHHhh
Q 020000 117 TVESIVEDG--SYVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADAR 192 (332)
Q Consensus 117 ~~~~llld~--~~r~ls~eer~RVA~HEAGHaLVAyLLg--~PV~kyTI~p~eal~~G~~g~gG~~f~~~e~~~~l~~~r 192 (332)
++..++... .++.+++++|++++|||+||++|+|+++ .||+++||.| +| ...|+++ |..
T Consensus 267 al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~p-----r~--~~~g~~~--p~q-------- 329 (499)
T 2dhr_A 267 AADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVP-----RG--RALGFMM--PRR-------- 329 (499)
T ss_dssp HHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCC-----SS--CTTCSSH--HHH--------
T ss_pred HHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeec-----CC--CcCcccc--cch--------
Confidence 345555542 2457899999999999999999999997 6999999999 33 2345544 321
Q ss_pred hhcccCCCcCCCCCccCHHHHHHHHHHHhhhHHHHHHHhCC-ccchhhHHHHHHHHHHH----hCCChh-----------
Q 020000 193 KQKKDTGQVGSWGNRGEISTLNNFSCVILGGLVAEHLVFGH-SEGHYSDINKLDKVFQW----LGYNKS----------- 256 (332)
Q Consensus 193 ~~~~d~~~~~s~~~~g~~s~L~r~i~VaLAGrAAE~LvfG~-stGga~Dl~qat~iar~----lGmS~~----------- 256 (332)
.+.| ..+..++...++++|||||||+++||+ +||++||++++|+|++. ||||++
T Consensus 330 ----~~~~------~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~ 399 (499)
T 2dhr_A 330 ----EDML------HWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED 399 (499)
T ss_dssp ----TTCC------CCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC
T ss_pred ----hhhh------ccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc
Confidence 1111 134457788899999999999999998 46999999999999885 898751
Q ss_pred -----------------HHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHhhCcH--HHHHHHHhcccchhh
Q 020000 257 -----------------EADSQVK----WAALNTVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILTEQSLEL 308 (332)
Q Consensus 257 -----------------~id~evr----~A~~~A~~LL~~hr~ale~LAeaLle~esl--~ec~~~Ie~~~~~~~ 308 (332)
.+|.+++ .||.+|++||++|++.+++||++|+++||| +|+.++++...+..+
T Consensus 400 ~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~ 474 (499)
T 2dhr_A 400 TYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLEAP 474 (499)
T ss_dssp CSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCCCC
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCCCCc
Confidence 2566654 799999999999999999999999999999 699999987654433
No 4
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=94.56 E-value=0.018 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHhCCCCCceecCc
Q 020000 137 MCVQHEAGHFLTGYLLGVLPKGYEIPS 163 (332)
Q Consensus 137 RVA~HEAGHaLVAyLLg~PV~kyTI~p 163 (332)
-+..||.||+++|+..|++++++++.|
T Consensus 50 ~v~~HElgH~~~A~~~G~~~~~i~l~p 76 (224)
T 3b4r_A 50 SVVLHELGHSYVAKKYGVKIEKILLLP 76 (224)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCEEECS
T ss_pred HHHHHHHHHHHHHHHcCCccccEEEEE
Confidence 567899999999999999999999998
No 5
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=70.18 E-value=1.8 Score=36.31 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
-....|+.||.||+|=
T Consensus 106 ~~~~~v~~HEiGHaLG 121 (160)
T 2jsd_A 106 FNLFTVAAHEFGHALG 121 (160)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhHhhhc
Confidence 3578999999999963
No 6
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=68.60 E-value=17 Score=27.57 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=40.6
Q ss_pred hHHHHHHHH--HHHhCCChhHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHh-hCcHHHHHHHHh
Q 020000 239 SDINKLDKV--FQWLGYNKSEADSQVKW-------AALNTVLISHHHIQVRSRLAEAMAL-GRSIGSYTSKIL 301 (332)
Q Consensus 239 ~Dl~qat~i--ar~lGmS~~~id~evr~-------A~~~A~~LL~~hr~ale~LAeaLle-~esl~ec~~~Ie 301 (332)
+|+..+..| ++.+|||-++|..-+.. .......+|++|...++.=-+.|.. ...|...++..+
T Consensus 1 ~dl~rL~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 1 SDLQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777776 67799999887665432 2346678888888777766666654 333444444443
No 7
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=68.08 E-value=2.1 Score=36.36 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhHHH
Q 020000 133 EDHFMCVQHEAGHFL 147 (332)
Q Consensus 133 eer~RVA~HEAGHaL 147 (332)
.+...|+.||.||+|
T Consensus 113 ~~~~~v~~HEiGHaL 127 (167)
T 2xs4_A 113 IDLITVAAHEIGHLL 127 (167)
T ss_dssp EEHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHhh
Confidence 467799999999986
No 8
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=67.24 E-value=25 Score=29.24 Aligned_cols=65 Identities=6% Similarity=-0.103 Sum_probs=42.8
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHh-hCcHHHHHHHHhc
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKW------AALNTVLISHHHIQVRSRLAEAMAL-GRSIGSYTSKILT 302 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~------A~~~A~~LL~~hr~ale~LAeaLle-~esl~ec~~~Ie~ 302 (332)
.+|+..+..| ++.+|||-++|..-+.. ...+..++|+++.+.+++-.+.|.+ .+.|+..++..+.
T Consensus 43 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 43 AEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888876 56799998887655432 3455677888888777776666655 3335555554444
No 9
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=66.63 E-value=16 Score=30.55 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=45.6
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHh-hCcHHHHHHHHhcc
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKW------AALNTVLISHHHIQVRSRLAEAMAL-GRSIGSYTSKILTE 303 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~------A~~~A~~LL~~hr~ale~LAeaLle-~esl~ec~~~Ie~~ 303 (332)
.+|+.++..| ++.+|||-++|..-+.. ...+..++|+++.+.+++-.+.|.+ .+.|+..++.++..
T Consensus 57 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 57 EEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899988887 55699999887665542 3456778888888888777777666 34467777666655
No 10
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=65.84 E-value=2 Score=36.40 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhHHH
Q 020000 133 EDHFMCVQHEAGHFL 147 (332)
Q Consensus 133 eer~RVA~HEAGHaL 147 (332)
.+...||.||.||+|
T Consensus 109 ~~~~~va~HEiGHaL 123 (159)
T 2ovx_A 109 YSLFLVAAHQFGHAL 123 (159)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhh
Confidence 356799999999986
No 11
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=65.08 E-value=2.9 Score=35.79 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
-....|+.||.||+|=
T Consensus 111 ~~~~~v~~HEiGHaLG 126 (173)
T 1hy7_A 111 TNLFLVAAHEIGHSLG 126 (173)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHhhc
Confidence 3567999999999973
No 12
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=62.31 E-value=2.6 Score=35.95 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHH
Q 020000 134 DHFMCVQHEAGHFL 147 (332)
Q Consensus 134 er~RVA~HEAGHaL 147 (332)
....|+.||.||+|
T Consensus 110 ~~~~v~~HEiGHaL 123 (168)
T 1cge_A 110 NLHRVAAHELGHSL 123 (168)
T ss_dssp BHHHHHHHHHHHHT
T ss_pred chhhhhhhHhHhhh
Confidence 46799999999986
No 13
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=61.54 E-value=2.7 Score=35.69 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhHHH
Q 020000 133 EDHFMCVQHEAGHFL 147 (332)
Q Consensus 133 eer~RVA~HEAGHaL 147 (332)
.+...|+.||.||+|
T Consensus 111 ~~~~~v~~HEiGHaL 125 (165)
T 1hv5_A 111 TDLLQVAAHEFGHVL 125 (165)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred chhhhhHHHHhHhhh
Confidence 467899999999986
No 14
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=58.36 E-value=4.1 Score=34.62 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
.+...|+.||.||+|=
T Consensus 110 ~~~~~v~~HE~GHalG 125 (163)
T 1i76_A 110 YNLFLVAAHEFGHSLG 125 (163)
T ss_dssp CBHHHHHHHHHHHHHT
T ss_pred chhhhhhHHHhhhhhc
Confidence 3467999999999863
No 15
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=54.61 E-value=6.9 Score=31.05 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHHhHHHHH
Q 020000 130 LKEEDHFMCVQHEAGHFLTG 149 (332)
Q Consensus 130 ls~eer~RVA~HEAGHaLVA 149 (332)
++++|..-|.-||.||..-.
T Consensus 78 l~~~El~aVlaHElgH~~~~ 97 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIANG 97 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCC
Confidence 38899999999999998643
No 16
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=51.35 E-value=5.4 Score=36.62 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHH
Q 020000 134 DHFMCVQHEAGHFLT 148 (332)
Q Consensus 134 er~RVA~HEAGHaLV 148 (332)
....||.||.||+|=
T Consensus 194 ~l~~va~HEiGHaLG 208 (255)
T 1slm_A 194 NLFLVAAHEIGHSLG 208 (255)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred eehhhhHHHHHHHhc
Confidence 468999999999864
No 17
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=51.35 E-value=5 Score=33.95 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhHHH
Q 020000 133 EDHFMCVQHEAGHFL 147 (332)
Q Consensus 133 eer~RVA~HEAGHaL 147 (332)
.+...|+.||.||+|
T Consensus 106 ~~~~~~~~HE~GH~l 120 (159)
T 1y93_A 106 TNLFLTAVHEIGHSL 120 (159)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhh
Confidence 357899999999986
No 18
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=51.12 E-value=6.1 Score=33.97 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
.+...|+.||.||+|=
T Consensus 113 ~~~~~~~~HE~gH~lG 128 (174)
T 2y6d_A 113 INFLYAATHELGHSLG 128 (174)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred ceeeehhhHHhHhhhc
Confidence 4577999999999863
No 19
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=50.69 E-value=5.9 Score=33.87 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHH
Q 020000 134 DHFMCVQHEAGHFLT 148 (332)
Q Consensus 134 er~RVA~HEAGHaLV 148 (332)
....|+.||.||+|=
T Consensus 113 ~~~~~~~HE~gH~lG 127 (167)
T 3ayu_A 113 SLFLVAAHAFGHAMG 127 (167)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred cceeehhhhhHHhcc
Confidence 467999999999863
No 20
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=50.63 E-value=6.3 Score=33.41 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhHHHH
Q 020000 132 EEDHFMCVQHEAGHFLT 148 (332)
Q Consensus 132 ~eer~RVA~HEAGHaLV 148 (332)
..+...|+.||.||+|=
T Consensus 114 g~~~~~~~~he~gh~lg 130 (169)
T 1rm8_A 114 GNDLFLVAVHELGHALG 130 (169)
T ss_dssp SEEHHHHHHHHHHHHHT
T ss_pred cceeeeehhhhhhhhcC
Confidence 35678999999999863
No 21
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=48.55 E-value=51 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCChhHHHHHH----HHHHHHHHHHHHHh------HHHHHHHHHHHHh
Q 020000 242 NKLDKVFQWLGYNKSEADSQV----KWAALNTVLISHHH------IQVRSRLAEAMAL 289 (332)
Q Consensus 242 ~qat~iar~lGmS~~~id~ev----r~A~~~A~~LL~~h------r~ale~LAeaLle 289 (332)
.+..+++|.+|+|+.+||.=. +-..++..++|+.. ..+++.|.++|..
T Consensus 21 ~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~ 78 (115)
T 3ezq_A 21 SQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKK 78 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 466778999999999888543 23668888888854 4578888888876
No 22
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=45.76 E-value=8.9 Score=38.17 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
.+...||.||-||+|=
T Consensus 168 ~~~~~va~HEiGHaLG 183 (471)
T 1sat_A 168 DYGRQTFTHEIGHALG 183 (471)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred cccceeeeeecccccc
Confidence 3457899999999974
No 23
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P
Probab=44.78 E-value=9.5 Score=37.99 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHHH
Q 020000 134 DHFMCVQHEAGHFLTG 149 (332)
Q Consensus 134 er~RVA~HEAGHaLVA 149 (332)
+...|+.||.||+|=-
T Consensus 162 ~~~~va~HEiGHaLGL 177 (463)
T 1g9k_A 162 YGRQTLTHEIGHTLGL 177 (463)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred cchhhhhhhhhhhhcc
Confidence 4578999999999743
No 24
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A
Probab=43.50 E-value=10 Score=37.94 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHH
Q 020000 134 DHFMCVQHEAGHFLT 148 (332)
Q Consensus 134 er~RVA~HEAGHaLV 148 (332)
+...||.||.||+|=
T Consensus 178 ~~~~va~HEIGHaLG 192 (479)
T 1kap_P 178 YGRQTLTHEIGHTLG 192 (479)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred ccceeehhhhhhhhc
Confidence 567999999999874
No 25
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=43.40 E-value=11 Score=31.85 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhHHH
Q 020000 134 DHFMCVQHEAGHFL 147 (332)
Q Consensus 134 er~RVA~HEAGHaL 147 (332)
...+|+.||-||.|
T Consensus 76 ~~~~v~aHE~GH~L 89 (132)
T 1c7k_A 76 DSTRVTAHETGHVL 89 (132)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCceEEeeeehhcc
Confidence 35689999999986
No 26
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=42.51 E-value=57 Score=26.79 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCChhHHHHHH----HHHHHHHHHHHHHhH-------HHHHHHHHHHHhhCcHHHHHHHHhcc
Q 020000 243 KLDKVFQWLGYNKSEADSQV----KWAALNTVLISHHHI-------QVRSRLAEAMALGRSIGSYTSKILTE 303 (332)
Q Consensus 243 qat~iar~lGmS~~~id~ev----r~A~~~A~~LL~~hr-------~ale~LAeaLle~esl~ec~~~Ie~~ 303 (332)
+..+++|.+|+|+.+||.-. |...++.+++|+.-+ ..++.|.++|.+ --+..|...|+..
T Consensus 27 ~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~-~~l~~~ae~Ie~~ 97 (112)
T 1ich_A 27 RWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRD-MDLLGCLEDIEEA 97 (112)
T ss_dssp THHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-hccHHHHHHHHHH
Confidence 45567888999999887543 235677777777422 258899999883 4455666666655
No 27
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Probab=42.04 E-value=11 Score=37.63 Aligned_cols=16 Identities=38% Similarity=0.351 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
.+...||.||.||+|=
T Consensus 180 ~~~~~va~HEiGHaLG 195 (479)
T 1k7i_A 180 EYGRQTFTHEIGHALG 195 (479)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHhhc
Confidence 3446899999999974
No 28
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=41.11 E-value=8.7 Score=35.57 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 020000 134 DHFMCVQHEAGHFLTGYL 151 (332)
Q Consensus 134 er~RVA~HEAGHaLVAyL 151 (332)
..-+++.||.||+|=-|.
T Consensus 161 n~g~TltHEvGH~LGL~H 178 (262)
T 2cki_A 161 DKGRTATHEIGHWLNLYH 178 (262)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred cccchhhhhhhhhhccee
Confidence 346899999999874433
No 29
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=38.62 E-value=1.3e+02 Score=24.35 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=33.1
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHh
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKW------AALNTVLISHHHIQVRSRLAEAMAL 289 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~------A~~~A~~LL~~hr~ale~LAeaLle 289 (332)
.+|+..+..| ++.+|||-++|..-+.. ...+..++|+++.+.+++-.+.|.+
T Consensus 41 ~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 41 QQHLNELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788877776 56799998777654432 1345567777777666655544443
No 30
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=37.25 E-value=38 Score=29.93 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=39.3
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-hCcHHHHHHHHhc
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMAL-GRSIGSYTSKILT 302 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~A~~~A~~LL~~hr~ale~LAeaLle-~esl~ec~~~Ie~ 302 (332)
.+|+.++..| ++.+|||-++|..-+........++|+++...+++=.+.|.+ ...|+..++.++.
T Consensus 47 ~~~~~~l~~i~~l~~~g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 47 DSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp TGGGGHHHHHHHHHHTTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778777776 667999987776543211345667777777766655555544 3335554444443
No 31
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=37.09 E-value=45 Score=30.22 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.2
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHH
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQ 261 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~e 261 (332)
.+|+..+..| ++.+|||-++|..-
T Consensus 44 ~~dl~~L~~I~~lr~~G~sL~eIk~~ 69 (249)
T 3qao_A 44 EKDVDKLQQILFFKELDFPLKKIQQI 69 (249)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4788888886 56799998776543
No 32
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=36.04 E-value=12 Score=32.17 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhHHHH
Q 020000 133 EDHFMCVQHEAGHFLT 148 (332)
Q Consensus 133 eer~RVA~HEAGHaLV 148 (332)
.+...||.||.||+|=
T Consensus 111 ~~l~~v~~hE~Gh~lG 126 (168)
T 830c_A 111 YNLFLVAAHEFGHSLG 126 (168)
T ss_dssp EEHHHHHHHHHHHHTT
T ss_pred cchhhhhhhhhcchhc
Confidence 3568999999999863
No 33
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=34.83 E-value=39 Score=26.33 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCChhHHHHHH----HHHHHHHHHHHHHhH------HHHHHHHHHHHh
Q 020000 242 NKLDKVFQWLGYNKSEADSQV----KWAALNTVLISHHHI------QVRSRLAEAMAL 289 (332)
Q Consensus 242 ~qat~iar~lGmS~~~id~ev----r~A~~~A~~LL~~hr------~ale~LAeaLle 289 (332)
.+..+++|.+|+|+.+||.=. |...++..++|+... .+++.|.++|..
T Consensus 13 ~~wK~~~R~LGlse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~ 70 (86)
T 3oq9_A 13 QEAKKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKK 70 (86)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 456778999999999888543 234577777777654 466666666655
No 34
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.65 E-value=84 Score=26.07 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=16.0
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHH
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADS 260 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~ 260 (332)
.+|+..+..| ++..|||-++|..
T Consensus 45 ~~dl~~l~~I~~lr~~G~sl~~I~~ 69 (146)
T 3hh0_A 45 KDDLYVLQQIQSFKHLGFSLGEIQN 69 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4788777776 5568998766543
No 35
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=31.79 E-value=16 Score=31.95 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhHHH
Q 020000 133 EDHFMCVQHEAGHFL 147 (332)
Q Consensus 133 eer~RVA~HEAGHaL 147 (332)
.+..-||.||.||+|
T Consensus 120 ~~l~~v~~hE~Gh~l 134 (181)
T 3ma2_D 120 NDIFLVAVHELGHAL 134 (181)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred ceeeeeehhhccccc
Confidence 467789999999983
No 36
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=30.88 E-value=1.8e+02 Score=22.15 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCChhHHHHHH-H---HHHHHHHHHHHHhH------HHHHHHHHHHHh
Q 020000 243 KLDKVFQWLGYNKSEADSQV-K---WAALNTVLISHHHI------QVRSRLAEAMAL 289 (332)
Q Consensus 243 qat~iar~lGmS~~~id~ev-r---~A~~~A~~LL~~hr------~ale~LAeaLle 289 (332)
.-.++++.+||++.+|+.=. + .-..++.++|..-+ ..++.|.++|.+
T Consensus 27 ~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~ 83 (99)
T 1fad_A 27 DWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVAGLVKALRT 83 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 44567888999998876522 2 24567777777543 345667776665
No 37
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=30.83 E-value=19 Score=34.51 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHH
Q 020000 134 DHFMCVQHEAGHFLT 148 (332)
Q Consensus 134 er~RVA~HEAGHaLV 148 (332)
+...|+.||.||+|=
T Consensus 106 ~~~~~~~HE~gH~lG 120 (365)
T 3ba0_A 106 NLFLTAVHEIGHSLG 120 (365)
T ss_dssp ESSHHHHHHHHHHHT
T ss_pred cceeehhhhhhhhhc
Confidence 446899999999984
No 38
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis}
Probab=29.35 E-value=31 Score=34.74 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHhCC
Q 020000 137 MCVQHEAGHFLTGYLLGV 154 (332)
Q Consensus 137 RVA~HEAGHaLVAyLLg~ 154 (332)
.+..||.||++=.++...
T Consensus 355 ~TL~HE~GHalH~~ls~~ 372 (567)
T 3sks_A 355 DVLTHEAGHAFQVYESRK 372 (567)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccHHHHHHHHcc
Confidence 678999999999998863
No 39
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.11 E-value=63 Score=25.15 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=27.1
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEA 286 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~A~~~A~~LL~~hr~ale~LAea 286 (332)
.+|+..+..| ++.+|||-++|..-+...-....++|+++.+.++.=.+.
T Consensus 42 ~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~ 92 (108)
T 2vz4_A 42 DADLDRLQQILFYRELGFPLDEVAALLDDPAADPRAHLRRQHELLSARIGK 92 (108)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4788887776 567999987765543221123445566555555443333
No 40
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=28.02 E-value=79 Score=24.54 Aligned_cols=50 Identities=12% Similarity=0.304 Sum_probs=28.1
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAM 287 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~A~~~A~~LL~~hr~ale~LAeaL 287 (332)
.+|+..+..| ++.+|||-++|..-+...-....++|+++.+.++.=.+.|
T Consensus 43 ~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l 94 (109)
T 1r8d_A 43 DADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRM 94 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777766 5668999877654433211123455666655555443333
No 41
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=27.92 E-value=31 Score=34.68 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.9
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHh
Q 020000 129 SLKEEDHFMCVQHEAGHFLTGYLL 152 (332)
Q Consensus 129 ~ls~eer~RVA~HEAGHaLVAyLL 152 (332)
.++++|..-|..||.||.--.+.+
T Consensus 323 ~l~~~El~aVlaHElgH~~~~~~~ 346 (482)
T 4aw6_A 323 GCKNEEVLAVLGHELGHWKLGHTV 346 (482)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcccHH
Confidence 379999999999999998655544
No 42
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Probab=27.11 E-value=37 Score=35.01 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.5
Q ss_pred HHHHHHHhHHHHHHHhCC
Q 020000 137 MCVQHEAGHFLTGYLLGV 154 (332)
Q Consensus 137 RVA~HEAGHaLVAyLLg~ 154 (332)
.+..||.||++=.++...
T Consensus 454 ~TLfHE~GHalH~~ls~~ 471 (674)
T 2o36_A 454 RTYFHEFGHVMHQLCSQA 471 (674)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 679999999999888764
No 43
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=27.02 E-value=23 Score=31.26 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHHHHHHHhCC---CCCceecCchhhhccc
Q 020000 135 HFMCVQHEAGHFLTGYLLGV---LPKGYEIPSVEALKQD 170 (332)
Q Consensus 135 r~RVA~HEAGHaLVAyLLg~---PV~kyTI~p~eal~~G 170 (332)
+.-++.||.||||=-+..-. .=.-|+|. |+-+..|
T Consensus 87 ~~g~i~HEl~HalGf~HE~~R~DRD~yV~I~-~~ni~~~ 124 (201)
T 3edh_A 87 KFGIVVHELGHVVGFWHEHTRPDRDRHVSIV-RENIQPG 124 (201)
T ss_dssp SHHHHHHHHHHHHTBCCGGGSTTGGGTEEEC-GGGBCTT
T ss_pred ccchhHHHHHHHhcchhhhhhhccCcEEEEe-hhccCcc
Confidence 45899999999986655542 11234554 5555554
No 44
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Probab=26.56 E-value=38 Score=33.69 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHHhC
Q 020000 137 MCVQHEAGHFLTGYLLG 153 (332)
Q Consensus 137 RVA~HEAGHaLVAyLLg 153 (332)
.+..||.||++=.++..
T Consensus 352 ~TL~HE~GHa~H~~ls~ 368 (564)
T 3ahn_A 352 DVLTHEAGHAFQVYESR 368 (564)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHhCHHHHHHHhc
Confidence 67999999999888775
No 45
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Probab=26.46 E-value=33 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHhC
Q 020000 137 MCVQHEAGHFLTGYLLG 153 (332)
Q Consensus 137 RVA~HEAGHaLVAyLLg 153 (332)
.+..||.||++=.++..
T Consensus 470 ~TLfHE~GHalH~~ls~ 486 (678)
T 2o3e_A 470 ETYFHEFGHVMHQICAQ 486 (678)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67999999999988776
No 46
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=26.17 E-value=20 Score=35.67 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhHHH
Q 020000 134 DHFMCVQHEAGHFL 147 (332)
Q Consensus 134 er~RVA~HEAGHaL 147 (332)
....||.||.||+|
T Consensus 375 ~l~~Va~HE~GHaL 388 (425)
T 1l6j_A 375 SLFLVAAHEFGHAL 388 (425)
T ss_dssp EHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhc
Confidence 56789999999986
No 47
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=25.76 E-value=25 Score=31.14 Aligned_cols=35 Identities=20% Similarity=0.035 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHHHHHHhCCCC---CceecCchhhhccc
Q 020000 135 HFMCVQHEAGHFLTGYLLGVLP---KGYEIPSVEALKQD 170 (332)
Q Consensus 135 r~RVA~HEAGHaLVAyLLg~PV---~kyTI~p~eal~~G 170 (332)
..-++.||.||||=-+..-..+ .-|+|. |+.+..|
T Consensus 93 ~~g~i~HEl~HaLGf~HEh~R~DRD~yV~I~-~~nI~~~ 130 (199)
T 3lqb_A 93 YSGIAQHELNHALGFYHEQSRSDRDQYVRIN-WNNISPG 130 (199)
T ss_dssp SHHHHHHHHHHHHTCCCGGGSTTGGGTEEEC-GGGBCTT
T ss_pred ccchHHHHHHHHhccceeeeccCcCceEEee-hhhcCcc
Confidence 3589999999998665544211 234444 6666555
No 48
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=25.06 E-value=26 Score=35.55 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhCcH--HHHHHHHhc
Q 020000 276 HIQVRSRLAEAMALGRSI--GSYTSKILT 302 (332)
Q Consensus 276 hr~ale~LAeaLle~esl--~ec~~~Ie~ 302 (332)
+.++-+.|-+.|..+.|. .|.++.+-+
T Consensus 547 ~~~~~~~l~~i~~~G~s~~~~ell~~~tG 575 (615)
T 1r42_A 547 STEAGQKLFNMLRLGKSEPWTLALENVVG 575 (615)
T ss_dssp CHHHHHHHHHHHTTTTSSCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCcCCCCHHHHHHHhcC
Confidence 488888888666666664 466665554
No 49
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Probab=23.99 E-value=29 Score=35.26 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHH
Q 020000 137 MCVQHEAGHFLTGYL 151 (332)
Q Consensus 137 RVA~HEAGHaLVAyL 151 (332)
.+++||.||++=-..
T Consensus 343 ~tl~HE~GHa~y~~~ 357 (589)
T 1uze_A 343 VVAHHEMGHIQYFMQ 357 (589)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999998433
No 50
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.83 E-value=1.1e+02 Score=25.54 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=31.9
Q ss_pred hhHHHHHHHH--HHHhCCChhHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHh
Q 020000 238 YSDINKLDKV--FQWLGYNKSEADSQVKW-------AALNTVLISHHHIQVRSRLAEAMAL 289 (332)
Q Consensus 238 a~Dl~qat~i--ar~lGmS~~~id~evr~-------A~~~A~~LL~~hr~ale~LAeaLle 289 (332)
.+|+.++..| ++.+|||-++|..-+.. .......+|+++.+.+++=.+.|..
T Consensus 51 ~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~ 111 (154)
T 2zhg_A 51 RDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVA 111 (154)
T ss_dssp TTHHHHHHHHHHHHHHTCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888876 56799998776544321 1334556677666655544444433
No 51
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=23.33 E-value=27 Score=34.68 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHH
Q 020000 134 DHFMCVQHEAGHFLT 148 (332)
Q Consensus 134 er~RVA~HEAGHaLV 148 (332)
....||.||-||+|=
T Consensus 365 ~l~~va~HE~GHaLG 379 (421)
T 1eak_A 365 SLFLVAAHQFGHAMG 379 (421)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred cchhhhhhhhhhccC
Confidence 567899999999864
No 52
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.27 E-value=1.1e+02 Score=24.16 Aligned_cols=34 Identities=6% Similarity=0.011 Sum_probs=22.9
Q ss_pred HHHHHHHhCCChhHHHHHHH----HHHHHHHHHHHHhH
Q 020000 244 LDKVFQWLGYNKSEADSQVK----WAALNTVLISHHHI 277 (332)
Q Consensus 244 at~iar~lGmS~~~id~evr----~A~~~A~~LL~~hr 277 (332)
-.++++.+||+..+|+.=.. --..++.++|..-+
T Consensus 32 Wk~LAr~Lg~s~~~I~~I~~~~p~~~~eq~~~mL~~W~ 69 (111)
T 2yqf_A 32 WAELARELQFSVEDINRIRVENPNSLLEQSVALLNLWV 69 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45678889999988765321 23677888886543
No 53
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=23.03 E-value=31 Score=31.41 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHHhCCCC---CceecCchhhhccc
Q 020000 135 HFMCVQHEAGHFLTGYLLGVLP---KGYEIPSVEALKQD 170 (332)
Q Consensus 135 r~RVA~HEAGHaLVAyLLg~PV---~kyTI~p~eal~~G 170 (332)
..-++.||-||||=-+..-..+ .-|+| .|+.+..|
T Consensus 120 ~~g~i~HEl~HaLGf~HEhsR~DRD~yV~I-~~~nI~~~ 157 (235)
T 3lq0_A 120 YHGTILHALMHAIGFYHEHTRMDRDNYVTI-NYQNVDPS 157 (235)
T ss_dssp SHHHHHHHHHHHHHBCCGGGSTTGGGTEEE-CGGGBCTT
T ss_pred ccchHHHHHHHHhccceeeecccccceeEe-ehhccCcc
Confidence 3589999999999777665322 22444 47766655
No 54
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A
Probab=22.83 E-value=31 Score=35.37 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhCc--HHHHHHHHhcc
Q 020000 277 IQVRSRLAEAMALGRS--IGSYTSKILTE 303 (332)
Q Consensus 277 r~ale~LAeaLle~es--l~ec~~~Ie~~ 303 (332)
.++.+.|-+.+..+.| -.|.++.+-+.
T Consensus 530 ~~a~~~L~~i~~~G~s~~~~ell~~~tG~ 558 (598)
T 2x96_A 530 AAAGAAFHNMLSMGASKPWPDALEAFNGE 558 (598)
T ss_dssp HHHHHHHHHHHTTTTSSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHhCC
Confidence 7888888544444555 35776665444
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=22.45 E-value=27 Score=31.58 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=18.7
Q ss_pred CCChhHHHHHHHHHHhHHHHHHH
Q 020000 129 SLKEEDHFMCVQHEAGHFLTGYL 151 (332)
Q Consensus 129 ~ls~eer~RVA~HEAGHaLVAyL 151 (332)
.+.+.+....++||+||+++..-
T Consensus 260 ~~~~~~~~~~~l~~~g~~~~~eq 282 (293)
T 3t15_A 260 TFEQPKMTIEKLLEYGNMLVQEQ 282 (293)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHH
Confidence 44666788899999999999764
No 56
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.39 E-value=3.1e+02 Score=22.26 Aligned_cols=46 Identities=11% Similarity=-0.040 Sum_probs=31.6
Q ss_pred HHHHHHHhCCChhHHHHHHH----HHHHHHHHHHHHhH------HHHHHHHHHHHh
Q 020000 244 LDKVFQWLGYNKSEADSQVK----WAALNTVLISHHHI------QVRSRLAEAMAL 289 (332)
Q Consensus 244 at~iar~lGmS~~~id~evr----~A~~~A~~LL~~hr------~ale~LAeaLle 289 (332)
-.+++|.+||++.+|+.=.. --..++.++|..-+ ..++.|.++|.+
T Consensus 20 Wk~LAR~LGlse~dId~Ie~~~p~dl~eq~~~mL~~W~~r~G~~ATv~~L~~AL~~ 75 (122)
T 3ezq_B 20 WRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRS 75 (122)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 34567889999988765321 24577888886443 457888888875
No 57
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.35 E-value=3e+02 Score=22.03 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCChhHHHHHHH----HHHHHHHHHHHHhHH------HHHHHHHHHHh
Q 020000 243 KLDKVFQWLGYNKSEADSQVK----WAALNTVLISHHHIQ------VRSRLAEAMAL 289 (332)
Q Consensus 243 qat~iar~lGmS~~~id~evr----~A~~~A~~LL~~hr~------ale~LAeaLle 289 (332)
.-..++|.+||++.+|+.=.. .-..++.++|..-++ .++.|.++|.+
T Consensus 37 ~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~ 93 (115)
T 2o71_A 37 EWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRA 93 (115)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 355678889999988875321 234677777765443 34555555554
No 58
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=21.59 E-value=45 Score=29.93 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHhHHHHHHHh
Q 020000 131 KEEDHFMCVQHEAGHFLTGYLL 152 (332)
Q Consensus 131 s~eer~RVA~HEAGHaLVAyLL 152 (332)
+++|..-|+-||.||..-.+.+
T Consensus 96 ~~~ELaaVLaHElgH~~~~H~~ 117 (253)
T 3c37_A 96 NETELAGVLAHEINHAVARHGT 117 (253)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHH
Confidence 7899999999999999776654
No 59
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=21.58 E-value=1.6e+02 Score=25.27 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCChhHHHHHHH----HHHHHHHHHHHHhH------HHHHHHHHHHHhhCcHHHHHHHHhcccchhhh
Q 020000 243 KLDKVFQWLGYNKSEADSQVK----WAALNTVLISHHHI------QVRSRLAEAMALGRSIGSYTSKILTEQSLELL 309 (332)
Q Consensus 243 qat~iar~lGmS~~~id~evr----~A~~~A~~LL~~hr------~ale~LAeaLle~esl~ec~~~Ie~~~~~~~~ 309 (332)
....+++.+||++.+|+.=.. --..++.++|...+ ..++.|.++|..-. ..+....|+.......+
T Consensus 111 ~Wk~Lar~Lgl~~~~I~~I~~~~~~d~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~-~~diae~l~~~~~~~~~ 186 (191)
T 2gf5_A 111 DWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQ-MNLVADLVQEVQQARDL 186 (191)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcC-cHHHHHHHHHHHHHhhh
Confidence 345578889999988765221 23567778877654 34788888888744 34444444444433333
No 60
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=21.33 E-value=1.9e+02 Score=24.15 Aligned_cols=48 Identities=13% Similarity=0.291 Sum_probs=40.0
Q ss_pred HHHHHHhhhHHHHHHHhCCccchhhHHHHHHHHHHHhCCChhHHHHHH
Q 020000 215 NFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQV 262 (332)
Q Consensus 215 r~i~VaLAGrAAE~LvfG~stGga~Dl~qat~iar~lGmS~~~id~ev 262 (332)
.....+++|+...+.-|-..++...|++-+..++...|.+..++-+++
T Consensus 137 ~~A~~l~~gI~~DTg~f~~~~tt~~~~~~aa~L~~~~g~d~~~i~~~l 184 (188)
T 1wpn_A 137 EIAGLMLSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNM 184 (188)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345689999999999999888889999999998888899877766554
No 61
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=21.10 E-value=58 Score=30.72 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHHHhHHHHHHH
Q 020000 130 LKEEDHFMCVQHEAGHFLTGYL 151 (332)
Q Consensus 130 ls~eer~RVA~HEAGHaLVAyL 151 (332)
.++..++=++.||.||.+...-
T Consensus 91 ~~~~rqrFTLAHELGHllLh~~ 112 (301)
T 3dte_A 91 VRPERQRFTLAHEISHALLLGD 112 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHHHhccc
Confidence 4778888889999999998764
No 62
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=20.25 E-value=36 Score=33.57 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHH
Q 020000 134 DHFMCVQHEAGHFLT 148 (332)
Q Consensus 134 er~RVA~HEAGHaLV 148 (332)
....|+.||.||+|=
T Consensus 192 ~l~~v~~HE~GH~lG 206 (450)
T 1su3_A 192 NLHRVAAHELGHSLG 206 (450)
T ss_dssp BHHHHHHHHHHHHTT
T ss_pred ehhchhhhHHHHhcc
Confidence 457999999999954
No 63
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=20.09 E-value=1.7e+02 Score=23.50 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCChhH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCc---HHHHHHHHhcccch
Q 020000 240 DINKLDKVFQWLGYNKSE---ADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRS---IGSYTSKILTEQSL 306 (332)
Q Consensus 240 Dl~qat~iar~lGmS~~~---id~evr~A~~~A~~LL~~hr~ale~LAeaLle~es---l~ec~~~Ie~~~~~ 306 (332)
|++.+.+|+..+.+.... +..-+-.+|.+-.+-.++|++-++.+++.|.+..+ ++..-++|-+..++
T Consensus 20 d~~~v~~IL~eiE~~~rksnni~tS~If~Yanh~~~V~knk~fy~li~~IlekYs~KiGiEnV~eLIlnt~~~ 92 (99)
T 2kjg_A 20 NFNLVMQILDEIELDLRGSDNIKTSIIYVYSSHLDEIRKNKEFYDMIAEILQRYYKKIGIENVNQLILTTIKL 92 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccccchhHHHHHHHHHhh
Confidence 444444454443322211 33345578999999999999999999999998766 67777887766554
Done!