BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020001
         (332 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LDU4|RCCR_ARATH Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis
           thaliana GN=RCCR PE=1 SV=2
          Length = 319

 Score =  300 bits (769), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 205/282 (72%), Gaps = 10/282 (3%)

Query: 53  MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
           M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A
Sbjct: 41  MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSA 100

Query: 112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
           +ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS 
Sbjct: 101 EASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSS 160

Query: 172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
            SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP
Sbjct: 161 KSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSP 220

Query: 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKA 288
           +A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++ 
Sbjct: 221 TASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERM 274

Query: 289 YLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
            LE+RD   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 275 ELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316


>sp|Q9MTQ6|RCCR_HORVU Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare
           GN=rccR PE=2 SV=1
          Length = 205

 Score =  197 bits (501), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 142/205 (69%), Gaps = 5/205 (2%)

Query: 126 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 185
           IDF+L S +H ++P GA ++ITSL   LN+STDAP+ ++E IQ SP+S+V++LDL PRKD
Sbjct: 1   IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 59

Query: 186 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 245
           L LHP+Y++ +YE T +D+ R+++E++P+ RPY S SL++R   SP+A+   +D     G
Sbjct: 60  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTID----CG 115

Query: 246 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 305
            G    L+ I+  H+  V K ++ IWL+ CA     + E ++  + KRD  +++K+IE+D
Sbjct: 116 KGGEGTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEGEREIMVKRDRTVRSKSIEVD 175

Query: 306 LGSSFPRLFGPQVASRVLGEIQKVF 330
           L ++ PR+FGP V+ R++ EI+K F
Sbjct: 176 LTANLPRMFGPDVSGRIIAEIRKAF 200


>sp|Q80ZE4|MPRA_MOUSE Membrane progestin receptor alpha OS=Mus musculus GN=Paqr7 PE=2
           SV=2
          Length = 345

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 138 LPTGAALNITSLS-AYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLH 189
           LPT A L   S + +  N  +  P LL  + Q +PS+L  +LD+SP    VLH
Sbjct: 174 LPTAAFLAWLSCAGSCYNKYSQKPGLLGRIFQEAPSALAYVLDISP----VLH 222


>sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio salmonicida (strain
           LFI1238) GN=rhlB PE=3 SV=1
          Length = 434

 Score = 32.7 bits (73), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 30/71 (42%)

Query: 58  EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQI 117
           EGRK          P R+L + + +  E+ + S  L   L    + YE Q    +A + I
Sbjct: 78  EGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVDI 137

Query: 118 RSGLKSSLIDF 128
             G    +IDF
Sbjct: 138 LIGTTGRIIDF 148


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,307,409
Number of Sequences: 539616
Number of extensions: 4879118
Number of successful extensions: 13921
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13902
Number of HSP's gapped (non-prelim): 23
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)