Query 020001
Match_columns 332
No_of_seqs 43 out of 45
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02581 red chlorophyll catab 100.0 5E-124 1E-128 870.7 22.9 267 62-332 1-267 (267)
2 PF06405 RCC_reductase: Red ch 100.0 1E-115 3E-120 811.1 19.9 255 72-330 1-255 (255)
3 PRK13248 phycoerythrobilin:fer 99.3 1E-10 2.2E-15 110.4 14.9 213 75-325 17-248 (253)
4 PRK13250 phycoerythrobilin:fer 99.2 3.9E-10 8.3E-15 106.2 15.3 215 76-326 7-236 (248)
5 PRK13247 dihydrobiliverdin:fer 99.2 4.8E-10 1E-14 104.9 14.0 206 76-325 5-226 (238)
6 PRK02816 phycocyanobilin:ferre 99.1 1.9E-09 4E-14 101.2 15.7 211 72-325 11-236 (243)
7 PRK13249 phycoerythrobilin:fer 99.1 1.2E-09 2.5E-14 103.4 13.7 219 76-325 22-252 (257)
8 PF05996 Fe_bilin_red: Ferredo 99.0 1E-09 2.2E-14 101.3 9.0 212 82-325 2-224 (228)
9 PRK13246 dihydrobiliverdin:fer 98.8 1.1E-07 2.4E-12 89.3 12.6 203 75-326 4-226 (236)
10 PRK00321 rdgC recombination as 39.0 1E+02 0.0022 30.5 6.8 71 261-331 76-158 (303)
11 PF09679 TraQ: Type-F conjugat 37.7 34 0.00074 28.9 2.9 29 263-298 54-82 (93)
12 PF10691 DUF2497: Protein of u 22.6 82 0.0018 25.3 2.6 24 247-274 30-53 (73)
13 PF06651 DUF1163: Protein of u 21.8 45 0.00097 27.0 0.9 22 72-93 5-26 (70)
14 PHA02046 hypothetical protein 20.3 2.5E+02 0.0053 24.2 5.0 73 249-329 7-84 (99)
No 1
>PLN02581 red chlorophyll catabolite reductase
Probab=100.00 E-value=5.2e-124 Score=870.66 Aligned_cols=267 Identities=61% Similarity=1.029 Sum_probs=264.6
Q ss_pred ceeeccCCCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCCCC
Q 020001 62 KFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTG 141 (332)
Q Consensus 62 ~~~efP~~s~~~r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~G 141 (332)
|||||||+|+|||+||++|++++|+|||++|+||++|+||++|+|++|+|+|||++|||++||+|||||||||||+||+|
T Consensus 1 ~~~efp~~s~a~r~lm~~l~~~ve~Rlg~~l~Ps~~P~dv~~f~n~~G~a~GSl~irsG~~~S~IDf~l~SWlh~~lp~g 80 (267)
T PLN02581 1 RFIEFPKVSPAHRELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGAQGSKIDFVLGSWLHCKLPTG 80 (267)
T ss_pred CcccccCCCcchHHHHHHHHHHHHHHhccccCCccCchHHHHhcCCCCCceeEEEEecCCCCCceeEEeehhhcCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcccccCc
Q 020001 142 AALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSS 221 (332)
Q Consensus 142 galnItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~PY~S~ 221 (332)
||+|||||++||||+||||||+|||||+|||+|||||||+||||||+||||||||||+|++|++||+|+|+||+|||+|+
T Consensus 81 galnItsL~~~L~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~~yYe~t~ld~~Rq~l~k~pe~~pY~S~ 160 (267)
T PLN02581 81 GALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSP 160 (267)
T ss_pred ccccHHHHHhHhccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHHHHhcccccHHHHHHHHhCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcc
Q 020001 222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKT 301 (332)
Q Consensus 222 SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~ 301 (332)
|||||+++|||||||+|+| ++|++++|||||+++|+|+||+||++||+.|+|++++|+|+||++|+|||++||+|+
T Consensus 161 SLyvRs~~SPTAi~~~i~~----~~~~~~~leeiv~~~i~p~a~evl~~WL~~c~~~~~~~~e~Er~~l~kRD~~Ir~k~ 236 (267)
T PLN02581 161 SLYVRSVVSPTAILVKIDC----EEGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKS 236 (267)
T ss_pred cceeeeccCCceEEEEeec----CCCccccHHHHHHhhhhHHHHHHHHHHHHHhccCCccCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 677899999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcccccChhhHHHHHHHHHhhhcC
Q 020001 302 IEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332 (332)
Q Consensus 302 iE~Dl~~~~pRLFGqEvadRVv~air~~f~~ 332 (332)
||+||++|||||||||+|||||++|||+|++
T Consensus 237 iE~Dl~~nlprlFGqevadRvv~air~~~~~ 267 (267)
T PLN02581 237 VEVDLSSNMPRLFGQEVADRVVAAIRKAFRV 267 (267)
T ss_pred eeechhhhhhhHhChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 2
>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.
Probab=100.00 E-value=1.5e-115 Score=811.11 Aligned_cols=255 Identities=59% Similarity=0.995 Sum_probs=224.4
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCCCCccccceeeee
Q 020001 72 PVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSA 151 (332)
Q Consensus 72 ~~r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~GgalnItsL~v 151 (332)
|||++|.+|++++|+|||++|+||++|+||++|+|++|+|+|||++|||++||+|||||||||||++|+||++|||||++
T Consensus 1 ~~relm~~l~~~~e~rL~~~L~p~~~p~dv~~f~n~~g~a~GSl~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v 80 (255)
T PF06405_consen 1 AHRELMVDLASEVEARLGSRLLPSTVPPDVQYFSNQDGNAEGSLHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSV 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHTGGGB----S-HHHHEEE-TTSSEEEEEEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcccCCCCCChhHHHhcCCCCCceeEEEEecCCCCCceeEEEeeeeeecCCCCceeeeheeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcccccCcccceeeecCc
Q 020001 152 YLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231 (332)
Q Consensus 152 ~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~PY~S~SLyvRs~~SP 231 (332)
||||+||||||+|||||+||++|||||||+||||||+|||||+||||+|+||+|||+|+++||+|||+|+|||||+++||
T Consensus 81 ~L~~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~~yYe~t~ld~~R~~le~~pe~~pY~S~SLyvRs~~SP 160 (255)
T PF06405_consen 81 FLNPSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLDRYYEDTQLDKHRQLLEKLPEFQPYVSSSLYVRSVVSP 160 (255)
T ss_dssp EE-TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHHHHTTTTTCHHHHHHHHHSTTEEE---S-HHHHHHS-T
T ss_pred eecccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHHHHhcccchhHHHHHHHhCcccCcccCcchhheeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceecccCCCcc
Q 020001 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFP 311 (332)
Q Consensus 232 TAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~Dl~~~~p 311 (332)
|||||+|+| ++|++++|||||+++|+|+||+||++|||.|+|++++|+|+||++|+|||++||+|+||+||+||||
T Consensus 161 TAi~~~i~~----~~g~~~~leeIv~~~i~p~A~~vl~~WL~~c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~~~p 236 (255)
T PF06405_consen 161 TAILYSIDC----EEGGEERLEEIVRDHIAPVAKEVLDIWLDSCADEAREVEEEERAALAKRDRMIRRKSIEVDLSSNLP 236 (255)
T ss_dssp T-EEEEEE-----SS--HHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ceEEEEecc----cccchhhHHHHHHhhhhHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhceeeeccccchh
Confidence 999999999 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHHHhhh
Q 020001 312 RLFGPQVASRVLGEIQKVF 330 (332)
Q Consensus 312 RLFGqEvadRVv~air~~f 330 (332)
||||||+|||||++|||+|
T Consensus 237 rlFG~evadrvv~ai~~~f 255 (255)
T PF06405_consen 237 RLFGQEVADRVVAAIRGAF 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhChHHHHHHHHHHHhhC
Confidence 9999999999999999998
No 3
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=99.27 E-value=1e-10 Score=110.37 Aligned_cols=213 Identities=18% Similarity=0.330 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCC----------CCccc
Q 020001 75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAAL 144 (332)
Q Consensus 75 ~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp----------~Ggal 144 (332)
..+..|.+.|+++ + ..|-.+|.++.+=.+ .+|..+++..-++.||..-..| .|..+
T Consensus 17 ~fl~~l~~~l~~~-~--~~p~~i~~~f~~~e~-----------~~~~~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~L 82 (253)
T PRK13248 17 NFLKYLTNNLSKY-N--CLEKKIPSEYSYKDS-----------TYGSKKSKKNVNLSTWGVTHKKRIQFARAVCINSPNY 82 (253)
T ss_pred HHHHHHHHHHHHc-C--CceecCcHhhhhhhh-----------cccccccCCceEEEeeecccChHHHHHhhheecCCCC
Confidence 3577888888665 4 445558888774311 1234456677888888872222 57899
Q ss_pred cceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHH-HhhhCC-------Ccc
Q 020001 145 NITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ-MLEKVP-------EVR 216 (332)
Q Consensus 145 nItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~-~lek~P-------e~~ 216 (332)
+|.+..+|.+|..|-|=|.++|+.+ |+.-+.||||=|=..+ ..+|.++||+... .... .-+.+| ++.
T Consensus 83 qVLn~V~fP~p~yDLPiFGaDlV~~-~~~~~aIlDlqPl~~~--~~~Y~~~~~~~L~--~l~~~~~~~lP~~g~~~~e~~ 157 (253)
T PRK13248 83 SVLNFLIIPNTIYNVPFFGVDFVSL-PNSHLLVLDFQPSLKI--QNQYNNELLEKLI--KLKNHCHSSLPLAEKMSADVA 157 (253)
T ss_pred eEEEEEecCCCCCCCCccceeeecc-CCCcEEEEECCccccC--hHHHHHHHHhhcc--chhhhhHhhCCCCCcCcchhH
Confidence 9999999999999999999999999 5455679999997733 2479999999887 3333 346788 555
Q ss_pred cccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHH
Q 020001 217 PYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGL 296 (332)
Q Consensus 217 PY~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~ 296 (332)
+|+ ||..++++...+ ++ =.++|++.+-+..++.|++|++.+.. +.++...+.+.+.++-.-
T Consensus 158 ~~F----------Sp~~Lf~R~~~~----~e----~~~~ie~~~~~af~~YL~~y~~l~~~-a~~~~~~~~~~i~~~Q~~ 218 (253)
T PRK13248 158 RFF----------SPGVIWSKLPKE----ER----SDFLIENQLYTSFKEYLDLYLEILFE-SKEVNIGLQKELINGQNN 218 (253)
T ss_pred hhC----------CCceEEEecCCc----cc----chhhHHHHHHHHHHHHHHHHHHHHHh-CCCCCcccHHHHHHHHHH
Confidence 554 566777777552 11 14567888999999999999999984 666655444444433322
Q ss_pred hhhcceecccCCCc-ccccChhhHHHHHHH
Q 020001 297 IKNKTIEIDLGSSF-PRLFGPQVASRVLGE 325 (332)
Q Consensus 297 IR~k~iE~Dl~~~~-pRLFGqEvadRVv~a 325 (332)
-=+-..|.||+--+ -++||+|=|||.+..
T Consensus 219 Y~~yqaenDpar~vL~k~FG~eWae~yI~~ 248 (253)
T PRK13248 219 YLNYRRDNDPARPMLSSLFGKEFTESLINE 248 (253)
T ss_pred HHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 22356899999976 999999999999865
No 4
>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=99.21 E-value=3.9e-10 Score=106.15 Aligned_cols=215 Identities=16% Similarity=0.230 Sum_probs=152.3
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCC----------CCcccc
Q 020001 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAALN 145 (332)
Q Consensus 76 lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp----------~Ggaln 145 (332)
.+..+.+.+..++ .+.|..+|+++.+-.. +.|..-.+-+.++.+|++..-. .|..+.
T Consensus 7 Fl~~~~~~~~~~~--~l~p~~l~~~l~~~~~-----------~~~~~~~~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lq 73 (248)
T PRK13250 7 FLDYAITLLTERL--ELQPYPIPAGFERKEA-----------MTGKGKKQEEVVTTSYAFQSPKLRQIRAAHVQGGSALQ 73 (248)
T ss_pred HHHHHHHHHhhcC--CCCCCCCchhhhhhhh-----------hccccccCCceEEeehhhcCcHHHHHHHHHHhcCCCcE
Confidence 4556667775565 5667778899885532 2222223556778888764311 478999
Q ss_pred ceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcc---cccCcc
Q 020001 146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVR---PYFSSS 222 (332)
Q Consensus 146 ItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~---PY~S~S 222 (332)
|.+..+|.+|..|.|=|.++|+.+ |+....++||=|=.+ .+.+|.++|++... ...++..++|.+- ||.+
T Consensus 74 VLn~V~fP~p~yDLPiFGaDlv~~-~~~~laalDlqPl~~--~~~~Y~~~~~~~l~--~~~~~~r~l~~wg~~~~~e~-- 146 (248)
T PRK13250 74 VLNFVIFPHLNYDLPFFGADLVTL-PGGHLIALDMQPLFR--DDPAYQAKYTEPIL--PLFNAHQAHLPWGGDFPEEA-- 146 (248)
T ss_pred EEEEEecCCcCCCCCccceeeeec-CCceEEEEECCcccC--cHHHHHHHHHHhhH--HHHhhhhhcCCccccCcchh--
Confidence 999999999999999999999999 666655699999754 12699999999776 7777777776532 3332
Q ss_pred cceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhh-HHHHHHhhHHhhhcc
Q 020001 223 LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESD-KAYLEKRDGLIKNKT 301 (332)
Q Consensus 223 LyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~E-r~~L~~RD~~IR~k~ 301 (332)
...+||..++.+... .+.|++.+-+..++.|++|++..+ .+.++++.+ .+.+.+.-.--=+-.
T Consensus 147 ---~~~FSp~~lf~Rp~~------------~~~~e~~lf~af~~YL~~y~~~~~-~a~~~~~~~~~~~i~~~Q~~Y~~yq 210 (248)
T PRK13250 147 ---KPFFSPAFLWTRPQE------------TEVVETRVFEAFKDYLQAYLDFVE-QAEAVTDSEQLAEILQAQLRYLRYR 210 (248)
T ss_pred ---HhhcCCceEEEecCC------------hhHHHHHHHHHHHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHHHHH
Confidence 245677888888742 134556677799999999999999 567776555 333333222222356
Q ss_pred eecccCCCc-ccccChhhHHHHHHHH
Q 020001 302 IEIDLGSSF-PRLFGPQVASRVLGEI 326 (332)
Q Consensus 302 iE~Dl~~~~-pRLFGqEvadRVv~ai 326 (332)
.|.||+--| -++||+|=|||.+..+
T Consensus 211 aenDpar~vL~k~FG~eWae~yi~~~ 236 (248)
T PRK13250 211 AEKDPARGMFTRFYGEEWTEEYIHGF 236 (248)
T ss_pred HHcCcHHHHHHHHhChHHHHHHHHhc
Confidence 899999966 9999999999998653
No 5
>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=99.17 E-value=4.8e-10 Score=104.89 Aligned_cols=206 Identities=16% Similarity=0.223 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhcccc---------CC-CCcccc
Q 020001 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE---------LP-TGAALN 145 (332)
Q Consensus 76 lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~---------lp-~Ggaln 145 (332)
++..|++.|+++ .+.|..+|+++++-.+ . ....++.+|+... .- .|..++
T Consensus 5 ~l~~l~~~I~~~---~l~~~~ip~~l~~~~~--------------~---~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lq 64 (238)
T PRK13247 5 FLEELHKEIFSR---GGQSLPVPAGLEECVS--------------E---KGNAVIRSWLWQVPGFRRWRVTRLDAGDSLQ 64 (238)
T ss_pred HHHHHHHHHHHc---CCcccCCChhHhhhhc--------------c---cCceEEEeeeecCchHHHHHHHHhhcCCCcE
Confidence 577889999888 7888889999995532 1 2256777776533 11 478999
Q ss_pred ceeeeeecCCCCCCCceeeeeeeecCCeEEE-EEecCCccCCCCChhHHHHhhcCCChhHHHH---HhhhCCCcccccCc
Q 020001 146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---MLEKVPEVRPYFSS 221 (332)
Q Consensus 146 ItsL~v~L~pstDaPHF~~ElIq~sPtslvl-~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~lek~Pe~~PY~S~ 221 (332)
|.+..+|.+|..|.|=|.++|+.++-..... |+||=|=. -+.+|.++||+... ...+ .+.+.-+..+|-
T Consensus 65 VLn~V~fP~~~yDLPifG~Dlv~~~~~~~laAIlDlqPl~---~~~~~~~~y~~~L~--~l~~~~~~~~~~~~~~~~d-- 137 (238)
T PRK13247 65 VLNSVAYPDYNYDLPLMGIDLLWFGKKQKLVAVLDFQPLV---QDKDYLDRYFEGLK--SLKERFPDLNSEETMRFYD-- 137 (238)
T ss_pred EEEEEecCCCCCCCCccceeEeecCCCceEEEEEecCCCC---cchhhhHHHHHHHH--HHHHhhHhhcCCCCCCCcc--
Confidence 9999999999999999999999993234344 69999954 56799999998754 5543 333333333332
Q ss_pred ccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccc-hhhHHHHHHhhHHhhhc
Q 020001 222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVG-ESDKAYLEKRDGLIKNK 300 (332)
Q Consensus 222 SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~-e~Er~~L~~RD~~IR~k 300 (332)
....+||..++.+-.. +.+++.+-+..++.|++|++..+ .+.+++ ..+.+.+.+.-.--=+-
T Consensus 138 ---~~~~FSp~~lf~R~~~-------------~~~~~~l~~af~~YL~~~~~~~~-~a~~~~~~~~~~~i~~~Q~~Y~~y 200 (238)
T PRK13247 138 ---PNQYFSPWLLFCKGGA-------------ETATNSLPKAFSAFLKAYWQLHD-NAKKITSTIEIQEVVQLQIDYDIY 200 (238)
T ss_pred ---ccccCCCceEEeeCCc-------------HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHHHH
Confidence 2346677777777432 12457788999999999999999 566765 44444333322222234
Q ss_pred ceecccCCCc-ccccChhhHHHHHHH
Q 020001 301 TIEIDLGSSF-PRLFGPQVASRVLGE 325 (332)
Q Consensus 301 ~iE~Dl~~~~-pRLFGqEvadRVv~a 325 (332)
..|.||+--+ -++||+|=|||.+..
T Consensus 201 qaenDpar~~L~~~FG~~Wae~yi~~ 226 (238)
T PRK13247 201 SAERDPAHGLFSSYFGKEWSERFLHE 226 (238)
T ss_pred HHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 5899999966 999999999999865
No 6
>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated
Probab=99.13 E-value=1.9e-09 Score=101.18 Aligned_cols=211 Identities=18% Similarity=0.273 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHHHhhhcc--ccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhc---------cccCC-
Q 020001 72 PVRQLMVDLVSTVENTLDS--QLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWV---------HSELP- 139 (332)
Q Consensus 72 ~~r~lm~~L~s~ve~RL~~--~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWl---------h~~lp- 139 (332)
...-++..|++.|+++.+. .+.|..+|+|+.+=....+ +-...+.+|. |+..-
T Consensus 11 ~~~pli~~la~~i~~~~~~~~~l~p~~l~~~l~~~~~~~~---------------~~~l~I~n~~~q~~~fRk~hle~~~ 75 (243)
T PRK02816 11 QLHPLILQLAERIRSHWQQLLDLSPYALPPDLGYIEGKLE---------------GEKLFIENECYQAPGFRKLHLELAR 75 (243)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcCCCChhhcccccccC---------------CCeeEEEEeeecccchhhhheeeec
Confidence 4567889999999999885 6788889999886532111 1234444554 34421
Q ss_pred CCccccceeeeeecCCCCCCCceeeeeeeecCCeE-EEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcccc
Q 020001 140 TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPY 218 (332)
Q Consensus 140 ~GgalnItsL~v~L~pstDaPHF~~ElIq~sPtsl-vl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~PY 218 (332)
.|..+.|.+..+|.++..|.|=|.++|+.+ |+.. +.|+||=|=.. -+.+.|.+++ ++... ...++..++|++--
T Consensus 76 ~G~~lqVLn~V~fP~~~yDlPiFGaDlv~~-~~~~slaIlDlqPl~~-~~~~~Y~~~l-~~l~~-~~f~~~r~lp~wg~- 150 (243)
T PRK02816 76 LGNGLDILHCVMFPDPRYDLPIFGADLVAG-RGGISAAIVDLSPVSR-TLPDAYIKAL-SALPK-PAFSQPRELPEWGD- 150 (243)
T ss_pred cCCCceEEEEEecCCCCCCCCccceeEeec-CCceeEEEEecCcccc-cchHHHHHHH-Hhhcc-hhhhccccCCCccC-
Confidence 478999999999999999999999999997 6566 66899999662 2334888888 65531 44455666666655
Q ss_pred cCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccc-hhhHHHHHHhhHHh
Q 020001 219 FSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVG-ESDKAYLEKRDGLI 297 (332)
Q Consensus 219 ~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~-e~Er~~L~~RD~~I 297 (332)
.+||..++++-.. +.. +..+-+..++.|++|++.... +.++. .++.+...+.-.--
T Consensus 151 ---------~FSp~~lf~R~~~---------~~e----~~~~~~~f~~yL~~~~~~~~~-a~p~~~~~~~~~~~~~Q~~Y 207 (243)
T PRK02816 151 ---------IFSPYCLFIRPTN---------AEE----ENQFLDRVDEYLSIHCQLAIA-AQPDSDSEQIIERLAGQKNY 207 (243)
T ss_pred ---------ccCcceEEecCCC---------HHH----HHHHHHHHHHHHHHHHHHHHh-CCCCCCchhHHHHHHHHHHH
Confidence 5677777777432 111 146678999999999999994 55555 22222222222212
Q ss_pred hhcceecccCCCc-ccccChhhHHHHHHH
Q 020001 298 KNKTIEIDLGSSF-PRLFGPQVASRVLGE 325 (332)
Q Consensus 298 R~k~iE~Dl~~~~-pRLFGqEvadRVv~a 325 (332)
=+...|.||+--+ -|+||+|-|||.+..
T Consensus 208 ~~~q~enDptr~vL~~~FG~~Wae~yi~~ 236 (243)
T PRK02816 208 CLQQKRNDKTRRVLEKAFGPEWADRYITT 236 (243)
T ss_pred HHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 2245899999966 999999999998865
No 7
>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=99.11 E-value=1.2e-09 Score=103.42 Aligned_cols=219 Identities=18% Similarity=0.268 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehh---------ccccCC-CCcccc
Q 020001 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSW---------VHSELP-TGAALN 145 (332)
Q Consensus 76 lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SW---------lh~~lp-~Ggaln 145 (332)
.+..+.+.|+ ++ .+.|-.+|+++.+=...-++-.+ +..-...+| +|+..- .|..+.
T Consensus 22 fl~~~~~~l~-~~--~l~p~~ip~~l~~~e~~~~~~~~-----------~~~i~~~~~~~~~~~fRk~r~~~~~~G~~lq 87 (257)
T PRK13249 22 FLDDAIKALS-PF--QPEPYPVAEDFLQRESQTGSKSK-----------PVKVTTATWACKTEKIRQVRAACVEAGEAAS 87 (257)
T ss_pred HHHHHHHHHh-hC--CCcccCCChhhhhhhcccccccC-----------cceEEEeeeccCChHHHHHHHHHhhcCCCcE
Confidence 4667777775 33 66777788998865332222111 122223333 344422 478999
Q ss_pred ceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHH-hhhCCCcccccCcccc
Q 020001 146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQM-LEKVPEVRPYFSSSLY 224 (332)
Q Consensus 146 ItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~-lek~Pe~~PY~S~SLy 224 (332)
|.+..+|.+|..|.|=|.++|+.. |+...+.+||=|=.+- .|+|+++|++... ...++ -+++|+.-.-.+ -
T Consensus 88 VLn~V~fP~p~yDLPiFGaDlv~~-~~~~~lalDlqPl~~~--~~~~~~~y~~~L~--~~~~~~~~~lP~~g~i~~---e 159 (257)
T PRK13249 88 VLNFVINPSNRFDLPFFGADLVTL-PNGHLLALDLQPALKT--DEIHTQHVWERLM--PIFEHWQSKLPSGGPIPE---E 159 (257)
T ss_pred EEEEEecCCcCCCCCccceeeeec-CCceEEEEecCccccc--cHHHHHHHHHHHH--HHHHhhHHhCCCcCCccc---h
Confidence 999999999999999999999999 7777677999996532 5899999998885 55444 445666543211 3
Q ss_pred eeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceec
Q 020001 225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI 304 (332)
Q Consensus 225 vRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~ 304 (332)
-+..+||..++++... ++++ ...|...|.++-++.|++|++.++ .+.++..++...+.+.-.--=+-..|.
T Consensus 160 ~~~fFSp~~lf~Rp~~----~~e~----~~~~~~~l~~AF~~YL~~~~~l~~-~a~~~~~~~~~~i~~~Q~~Y~~yqaen 230 (257)
T PRK13249 160 AQPYFSPGFLWTRLPL----GEEG----DNLISEVIRPAFDEYLNLYLDLVE-EAKPVSKERAFKLLEGQKRYTSYRAEK 230 (257)
T ss_pred hhhcCCCceEEEecCC----ccch----hHHHHHHHHHHHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHHHHHHHHHHc
Confidence 3456788888888865 2221 134567788999999999999999 466775555555444333333356899
Q ss_pred ccCCCc-ccccChhhHHHHHHH
Q 020001 305 DLGSSF-PRLFGPQVASRVLGE 325 (332)
Q Consensus 305 Dl~~~~-pRLFGqEvadRVv~a 325 (332)
||+.-| -++||+|=|||.+..
T Consensus 231 Dpar~vL~k~FG~eWae~yi~~ 252 (257)
T PRK13249 231 DPARGMLTRFHGSEWTESYIHN 252 (257)
T ss_pred CcHHHHHHHHhCHHHHHHHHHh
Confidence 999966 999999999999865
No 8
>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1.3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....
Probab=99.02 E-value=1e-09 Score=101.26 Aligned_cols=212 Identities=19% Similarity=0.232 Sum_probs=133.8
Q ss_pred HHHHhhhcc--ccCCCCCCcccccccccCCCeeEE--EEEeeCCCCCcceeeeehhccccCC-CCccccceeeeeecCCC
Q 020001 82 STVENTLDS--QLLPCTLPPDVQYYENQNGTAQAS--LQIRSGLKSSLIDFILGSWVHSELP-TGAALNITSLSAYLNSS 156 (332)
Q Consensus 82 s~ve~RL~~--~llPst~P~Dv~~y~n~~G~a~gS--L~vrSG~~~S~IDf~l~SWlh~~lp-~GgalnItsL~v~L~ps 156 (332)
..|+++++. .|.|..+|+++.+-.+..|+.... =..+.++ +++= +|+..- .|..++|.|..+|.+++
T Consensus 2 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~i~n~~~q~~---~fRk-----~r~~~~~~g~~lqVL~~V~yP~~~ 73 (228)
T PF05996_consen 2 ETIEARWSSLPDLEPYPLPEELSYIESELGGERLVIENWCYQSP---KFRK-----LRLERADAGEGLQVLNCVIYPRPE 73 (228)
T ss_dssp HHHHHHHHHCTT-EEEEECCCCSEEEEETTCEEEEEEEEEEEET---TEEE-----EEEEEEEETTTEEEEEEEEEE-TT
T ss_pred hhHHHHHHHccCCeeecCChHhhhcccccchhhHHHHhhhhccc---HHHH-----HHHHHhhcCCCcEEEEEEEcCCCC
Confidence 355666655 467888889999988877754333 3344555 4442 233322 37789999999999999
Q ss_pred CCCCceeeeeeeecCCeEEE-EEecCCccCCCCChhHHHHhhcCCChhHHHH---HhhhCCCcccccCcccceeeecCcc
Q 020001 157 TDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---MLEKVPEVRPYFSSSLYLRCVISPS 232 (332)
Q Consensus 157 tDaPHF~~ElIq~sPtslvl-~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~lek~Pe~~PY~S~SLyvRs~~SPT 232 (332)
.|.|=|.++++..+...+++ |+||-|= ..+.+|..+|++... ...+ .+-..++-.|+-+. ..+||.
T Consensus 74 ydLPiFG~Dlv~~~~~~~~~ailDl~P~---~~~~~l~~~y~~~L~--~l~~~~~~~~~~~~~lp~w~~-----~iFSp~ 143 (228)
T PF05996_consen 74 YDLPIFGADLVAFPGKRISAAILDLQPL---SQDRDLPEKYYSKLA--PLPEKYQELFPEPRKLPEWGN-----QIFSPW 143 (228)
T ss_dssp S---EEEEEEEEETTETEEEEEEEEE-S---STTSHHCHHHHHHHH--TSHHH-TT--SSBTSSSGGCG-----SCS-TT
T ss_pred CCCCcccceeeeeCCccEEEEEEeCCCC---CCcccchHHHHHHHH--HHHHHHHhhccccccCchhHH-----HhCCCc
Confidence 99999999999995532555 7999885 667779999998655 3332 22223334444332 356777
Q ss_pred eEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCccc-chhhHHHHHHhhHHhhhcceecccCCCc-
Q 020001 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHV-GESDKAYLEKRDGLIKNKTIEIDLGSSF- 310 (332)
Q Consensus 233 Ai~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v-~e~Er~~L~~RD~~IR~k~iE~Dl~~~~- 310 (332)
.++++-.. . .+.+.+-+..+++|+.|++.... +.++ +.++......+-.---+...|.||+-.+
T Consensus 144 ~lf~r~~~-----------~--~~~~~~~~af~~yl~~~~~~~~~-a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL 209 (228)
T PF05996_consen 144 CLFIRPSN-----------P--EEEEQFLSAFKEYLQAYLELVEQ-AEPVTDPERIAERLEAQHRYCQYQAENDPTRRVL 209 (228)
T ss_dssp -EEEEEES-----------H--HHHHHHHHHHHHHHHHHHHHHHH-HTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred eEEeeCCC-----------H--HHHHHHHHHHHHHHHHHHHHHHh-CCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77777321 1 12367889999999999999884 4455 3333333333323333355789999866
Q ss_pred ccccChhhHHHHHHH
Q 020001 311 PRLFGPQVASRVLGE 325 (332)
Q Consensus 311 pRLFGqEvadRVv~a 325 (332)
-+.||+|-|||.+..
T Consensus 210 ~~~FG~~wae~yi~~ 224 (228)
T PF05996_consen 210 EKAFGEEWAERYINE 224 (228)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHhChHHHHHHHHH
Confidence 999999999998865
No 9
>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=98.76 E-value=1.1e-07 Score=89.28 Aligned_cols=203 Identities=17% Similarity=0.275 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCC----------CCccc
Q 020001 75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAAL 144 (332)
Q Consensus 75 ~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp----------~Ggal 144 (332)
..+.+|.+.|+.+ ...|-.+|.++....+ .+-.-++.+|+...-. .|..+
T Consensus 4 ~fl~~l~~~l~~~---~~~~~~i~~~f~~~~~-----------------~~~~~~I~n~~~q~~~fRk~r~~~~~~G~~l 63 (236)
T PRK13246 4 SLVDFLKTNIDEL---NGHELQISKEFKEHHN-----------------KDSKYIIKNWLFSSPEYRKWRITRLDGGKKL 63 (236)
T ss_pred HHHHHHHHHHHHc---CCccccCchhHHHHhc-----------------CCCceEEEeehhcCchHHHHHHHHhhcCCCc
Confidence 3567788888666 5556667788774422 1345566777653311 47899
Q ss_pred cceeeeeecCCCCCCCceeeeeeeecCCe-EEEEEecCCccCCCCChhHHHHhhcCCChhHHHH---Hh-----hhCCCc
Q 020001 145 NITSLSAYLNSSTDAPNLLIELIQSSPSS-LVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---ML-----EKVPEV 215 (332)
Q Consensus 145 nItsL~v~L~pstDaPHF~~ElIq~sPts-lvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~l-----ek~Pe~ 215 (332)
+|.+..+|.+|..|.|=|.++|+..++.. ++-||||=|= ..+.+|.++||+... .... .+ .+.|++
T Consensus 64 qVLn~V~fP~p~yDLPifG~Dlv~f~~~~~~aaIlDlqPl---~~d~~y~~~y~~~L~--~L~~~~~~~~~~~~r~~~e~ 138 (236)
T PRK13246 64 QVFNTVAYPNFKSELPILGADILWFGTSQKLLAILDYQPL---IQEKKYLEKYCSSLG--FIKKKYSAFDNNKMKNIYDS 138 (236)
T ss_pred EEEEEEecCCCCCCCCccceeeeecCCCceEEEEEeCCCc---ccchhhhHHHHHHHH--HHHHhhHhhCcccCCCCcch
Confidence 99999999999999999999999965645 6668999995 567899999999865 4444 22 366888
Q ss_pred ccccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhH
Q 020001 216 RPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDG 295 (332)
Q Consensus 216 ~PY~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~ 295 (332)
.+|+|+ .-+..+-.. +.++ ..+.+.=.+.++.+|+... .+..+...+.+.+.++-.
T Consensus 139 ~~~FSp----------~~lf~R~~~---------~~~~----~~~~~~F~~~v~~Yl~i~~-~~~~~~~~~~~~i~~~Q~ 194 (236)
T PRK13246 139 KKYFSP----------WVIICRGNK---------LNLD----RDLNNIFHSFVNNYLNINK-SNPVNQFLNLEEIKINQI 194 (236)
T ss_pred HhhcCC----------ceEEEecCC---------cccc----HHHHHHHHHHHHHHHHHHH-hcccCCccCHHHHHHHHH
Confidence 888776 333433111 1222 2233344455544444433 222333333333333322
Q ss_pred HhhhcceecccCCCc-ccccChhhHHHHHHHH
Q 020001 296 LIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI 326 (332)
Q Consensus 296 ~IR~k~iE~Dl~~~~-pRLFGqEvadRVv~ai 326 (332)
--=+-..|.||+--+ -++||+|=|||.+..+
T Consensus 195 ~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~ 226 (236)
T PRK13246 195 KYDKYSFEKDPADKLFKSFFGEKWTKKFINKF 226 (236)
T ss_pred HHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence 222355899999977 9999999999998653
No 10
>PRK00321 rdgC recombination associated protein; Reviewed
Probab=38.98 E-value=1e+02 Score=30.48 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhhhc-CCcccchhhHHHHHH--hhHHhhh-------cceecccCCCccccc--ChhhHHHHHHHHHh
Q 020001 261 HPVAKQVIGIWLNQCAC-GGRHVGESDKAYLEK--RDGLIKN-------KTIEIDLGSSFPRLF--GPQVASRVLGEIQK 328 (332)
Q Consensus 261 ~p~A~evl~~WL~~c~~-~~~~v~e~Er~~L~~--RD~~IR~-------k~iE~Dl~~~~pRLF--GqEvadRVv~air~ 328 (332)
+++.|+.+..+...... +++.++-.||..|+. ++.++.+ ..+.+|+.+++.-.+ -+-.++.+++.+||
T Consensus 76 asVVk~~l~erv~~ie~~~gr~v~rkEk~eiKe~v~~~LLprAf~k~~~~~~~id~~~g~l~VdasS~k~aE~~l~lLrk 155 (303)
T PRK00321 76 ASVIKQALEEKVAEIEAEEGRKLGKKEKDELKEEVTHELLPRAFSRRSQTFAWIDPVNGLIVVDAASAKKAEDVLALLRK 155 (303)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcCCccceEEEEEECCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 45667777777777664 577898888887743 2333332 338899999886665 45789999999999
Q ss_pred hhc
Q 020001 329 VFT 331 (332)
Q Consensus 329 ~f~ 331 (332)
.||
T Consensus 156 slg 158 (303)
T PRK00321 156 SLG 158 (303)
T ss_pred hcC
Confidence 996
No 11
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=37.71 E-value=34 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.451 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhh
Q 020001 263 VAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIK 298 (332)
Q Consensus 263 ~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR 298 (332)
-+-.+|+.|...+. ++||+.|++||..+-
T Consensus 54 GgYrILda~iarv~-------~eer~~~ear~~a~~ 82 (93)
T PF09679_consen 54 GGYRILDAWIARVS-------REERAALEARQQAIC 82 (93)
T ss_pred hhHHHHHHHHHHHh-------HHHHHHHHHHHHHHH
Confidence 35578888887666 488999999998764
No 12
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=22.58 E-value=82 Score=25.30 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=18.2
Q ss_pred CccchhHHHHhhchhhHHHHHHHHHHHh
Q 020001 247 GESTRLDYIITNHVHPVAKQVIGIWLNQ 274 (332)
Q Consensus 247 g~~~~leeIv~~~i~p~A~evl~~WL~~ 274 (332)
++..++|++|++-++|. |..|||.
T Consensus 30 ~~~~TlE~lvremLRPm----LkeWLD~ 53 (73)
T PF10691_consen 30 SSGRTLEDLVREMLRPM----LKEWLDE 53 (73)
T ss_pred cccccHHHHHHHHHHHH----HHHHHHh
Confidence 44589999999999886 4557763
No 13
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=21.82 E-value=45 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHhhhccccC
Q 020001 72 PVRQLMVDLVSTVENTLDSQLL 93 (332)
Q Consensus 72 ~~r~lm~~L~s~ve~RL~~~ll 93 (332)
-.+++|+|+.++=|-|||+++.
T Consensus 5 Igk~Im~DIKEr~evrfGsrl~ 26 (70)
T PF06651_consen 5 IGKDIMEDIKERKEVRFGSRLF 26 (70)
T ss_pred HHHHHHHHHHHhheeeeeeeEe
Confidence 4689999999999999999985
No 14
>PHA02046 hypothetical protein
Probab=20.28 E-value=2.5e+02 Score=24.19 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=55.6
Q ss_pred cchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceecccCC--Cccc---ccChhhHHHHH
Q 020001 249 STRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGS--SFPR---LFGPQVASRVL 323 (332)
Q Consensus 249 ~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~Dl~~--~~pR---LFGqEvadRVv 323 (332)
.++| +.++...-+++.+=+.|....+-|++...++++. +.+|-+-|.-||.. +|-+ -|-++.+.|.-
T Consensus 7 ~~rL-----g~LH~~~a~~l~~e~~~~re~eiPlpaad~aa~~---KFLKDNnItcdpaD~~~m~~Lr~e~~~~~a~rr~ 78 (99)
T PHA02046 7 AERL-----GELHELVCTAIEREFKWYRENDIPLPAADKAAIA---KFLKDNEITCDPADTINIDRLREEFRQAQAENRR 78 (99)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH---HHhhcCCcccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3667 7778888888888889999888899998888765 47899999999876 4433 36677777766
Q ss_pred HHHHhh
Q 020001 324 GEIQKV 329 (332)
Q Consensus 324 ~air~~ 329 (332)
++.++.
T Consensus 79 ~~~~~~ 84 (99)
T PHA02046 79 IALEGF 84 (99)
T ss_pred HHHHHH
Confidence 665554
Done!