Query 020001
Match_columns 332
No_of_seqs 43 out of 45
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3agc_A RED chlorophyll catabol 100.0 7E-103 2E-107 732.9 24.2 269 58-332 4-275 (276)
2 2x9o_A 15,16- dihydrobiliverdi 99.8 1.3E-19 4.3E-24 166.9 13.8 213 74-326 11-235 (244)
3 3i94_A Phycocyanobilin:ferredo 99.3 3.2E-12 1.1E-16 118.3 10.1 220 72-326 16-242 (248)
4 2g18_A Phycocyanobilin:ferredo 99.1 2.1E-10 7.1E-15 106.4 9.6 215 74-325 22-246 (253)
5 2vcl_A Cyanobacterial phycoery 98.7 2.6E-08 8.7E-13 92.0 6.9 193 74-325 25-227 (233)
6 2owy_A Recombination-associate 51.1 34 0.0012 32.2 7.0 71 261-331 77-159 (306)
7 2owl_A Recombination-associate 37.2 56 0.0019 30.7 6.1 71 261-331 77-159 (303)
8 3u65_B TP33 protein; tetratric 21.6 1.5E+02 0.0053 27.1 6.1 107 211-329 210-326 (328)
9 2a1j_B DNA excision repair pro 21.0 79 0.0027 23.8 3.3 70 255-330 17-88 (91)
10 2kv5_A FST, putative uncharact 14.9 80 0.0027 21.3 1.8 21 255-275 8-28 (33)
No 1
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=100.00 E-value=7.2e-103 Score=732.88 Aligned_cols=269 Identities=56% Similarity=0.937 Sum_probs=262.2
Q ss_pred ccccceeeccCCCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhcccc
Q 020001 58 EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE 137 (332)
Q Consensus 58 ~~~~~~~efP~~s~~~r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~ 137 (332)
++++|||||||+|+|||++|++|+++||+|||++++||++|+||++|+|++|+|+|||++|||+++|+||||++|||||+
T Consensus 4 ~~~~~~~~fp~~~~~~r~lm~~L~~~ie~rl~~~llP~~~P~d~~~~~~~~G~a~gsl~~~sg~~~s~id~~i~SWl~~~ 83 (276)
T 3agc_A 4 GSRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCK 83 (276)
T ss_dssp --CCCGGGCTTSCHHHHHHHHHHHHHHHHHTTTTBCCCCCCHHHHEEECTTSSEEEEEEEEEBCTTCSEEEEEEEEEEEE
T ss_pred cchhheeeCCCCChhHHHHHHHHHHHHHHHhcCccCCcCCChhHhhhcCcCCcccceeeeccCCCCCCcceeehhhhcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCccc
Q 020001 138 LPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRP 217 (332)
Q Consensus 138 lp~GgalnItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~P 217 (332)
||+||++|||+|++|||+++|+|||+|||||+||++++|+|||+||||||+|||||+||||+|++|.+|++++++|+++|
T Consensus 84 l~~G~al~I~nlv~yl~~~~D~Phfgidli~~g~~~ll~vLDl~PRkdLv~~~dYL~rYye~~~l~~lr~~~~~l~d~~p 163 (276)
T 3agc_A 84 IPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNP 163 (276)
T ss_dssp CTTSCEEEEEEEEEEECTTCCCCCEEEEEEESSSSEEEEEEECCCSSCTTTCHHHHHHHTTSSSHHHHHHHHHTSTTEEE
T ss_pred ccCccceeheeeeeecCcccCCchhhHHHHhcCCCceEEEEecCCccccccCHHHHHHHhcccccHHHHHHHHhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcc---cchhhHHHHHHhh
Q 020001 218 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRD 294 (332)
Q Consensus 218 Y~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~---v~e~Er~~L~~RD 294 (332)
|+|++||+|+++|||||||+|+| ++| ++|||||+++|.|+|+++|++||++|++.+.. |+|+||++|+|||
T Consensus 164 YfS~sLf~R~~~Spta~~~~~~~----~~g--~~l~eiv~~~l~p~~~e~L~~wl~~~~~~~~~~~~~~e~e~~~l~~rd 237 (276)
T 3agc_A 164 YVSPSLFVRSAVSPTASMLKIDA----EEE--DKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRD 237 (276)
T ss_dssp CCCSCHHHHHHSCTTCEEEEEEC----SSH--HHHHHHHHHTHHHHHHHHHHHHHHHTTCSSSCCCCCCHHHHHHHHHHH
T ss_pred ccChhHHhhhccCchhheeeccc----ccc--chHHHHHHHhhHHHHHHHHHHHHHHhhccCCccCCCChhHHHHHHHHH
Confidence 99999999999999999999999 444 89999999999999999999999999986665 8999999999999
Q ss_pred HHhhhcceecccCCCcccccChhhHHHHHHHHHhhhcC
Q 020001 295 GLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332 (332)
Q Consensus 295 ~~IR~k~iE~Dl~~~~pRLFGqEvadRVv~air~~f~~ 332 (332)
++||+++||+||+++||||||||+|||||++|||+|||
T Consensus 238 ~~~r~~saE~Dpa~~l~r~FG~E~sdr~l~~~~~~~~~ 275 (276)
T 3agc_A 238 KSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFGV 275 (276)
T ss_dssp HHHHHHHHHHHTTTTHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhcccCchhchHhhhCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999986
No 2
>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}
Probab=99.81 E-value=1.3e-19 Score=166.88 Aligned_cols=213 Identities=17% Similarity=0.217 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCCCCccccceeeeeec
Q 020001 74 RQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYL 153 (332)
Q Consensus 74 r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~GgalnItsL~v~L 153 (332)
.-++..|+..|+++ .+.|..+|+++++..+..+.+.+.-.+++++ +++ -+++|+... |..+.|.|..+|.
T Consensus 11 ~p~l~~l~~~i~~~---~l~p~~~~~~l~~~~~~~~~~~i~n~~y~~~---~fR-k~r~~~~~~---g~~lqVLh~V~fP 80 (244)
T 2x9o_A 11 DSFLNELHSDITKR---GGSPLPLPEGLEECRSSKSSSVIQSWLWDVP---GFR-RWRVTRLDA---GDSLQVFNSVAYP 80 (244)
T ss_dssp HHHHHHHHHHHHHT---TCEEECCCTTSSEEECTTTCCEEEEEEEECT---TEE-EEEEEEEEE---TTTEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHc---CCccCCCChHhhhhhcCCCceEEEEEEecCc---hHh-HHHHHHhcc---CCCcEEEEEEecc
Confidence 35688999999998 5666678899999999888899999999999 999 888888776 7789999999999
Q ss_pred CCCCCCCceeeeeeeec-CCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHH---Hhh---hCCC--cccccCcc-c
Q 020001 154 NSSTDAPNLLIELIQSS-PSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---MLE---KVPE--VRPYFSSS-L 223 (332)
Q Consensus 154 ~pstDaPHF~~ElIq~s-Ptslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~le---k~Pe--~~PY~S~S-L 223 (332)
+|+.|.|+|.++|+..+ ...++.++||-|.. .+.+|.++||+... ..++ .+. ..|. +.+|+|+. |
T Consensus 81 ~~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~---~d~~y~~~Y~~~L~--~l~~~~~~~~~~~~~~~~e~~~~FSp~~l 155 (244)
T 2x9o_A 81 DYNYDHPLMGVDLLWFGARQKLVAVLDFQPLV---QDKDYLDRYFSGLK--ELNQRFPDLNGEETMRSFDPNQYFSSWLL 155 (244)
T ss_dssp CTTCCCCEEEEEEEEEGGGTEEEEEEEEECSC---CCHHHHHHHCHHHH--HHHHHCTTC--CCCCSSSCTTSSCCTTCE
T ss_pred CCCCCCCeehhheeccCCCceEEEEEEcCCCC---ChhhchHHHHHHHH--HHHHHHHhhcCccCCChhhhHhhcCCceE
Confidence 99999999999999763 43454599999984 35799999999765 4443 232 3333 56677776 6
Q ss_pred ceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccch-hhHHHHHHhhHHhhhcce
Q 020001 224 YLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGE-SDKAYLEKRDGLIKNKTI 302 (332)
Q Consensus 224 yvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e-~Er~~L~~RD~~IR~k~i 302 (332)
|+| .. + +.+.+.+-+..+++|++|+++++ ++.++++ ++++.+.++..-..+...
T Consensus 156 f~R------------~~----------~--~~~~~~~~~af~~yL~~~l~~~~-~a~p~~~~~~~~~i~~~Q~~Y~~~qa 210 (244)
T 2x9o_A 156 FCR------------GG----------A--EQADLSLPKAFSAFLKAYWDLHD-NAKSIPSTIPPEEVKNLQDKYDIYSA 210 (244)
T ss_dssp EEE------------EC----------H--HHHHHTHHHHHHHHHHHHHHHHH-HHTTSCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEe------------CC----------c--HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 666 11 1 22237788999999999999999 5777755 788888889999999999
Q ss_pred ecccCCCc-ccccChhhHHHHHHHH
Q 020001 303 EIDLGSSF-PRLFGPQVASRVLGEI 326 (332)
Q Consensus 303 E~Dl~~~~-pRLFGqEvadRVv~ai 326 (332)
|.||+..+ -++||+|-|||.+..+
T Consensus 211 enDpar~vl~~~FG~ewae~yi~~~ 235 (244)
T 2x9o_A 211 ERDPAHGLFTSHFGKDWSNRFLHEF 235 (244)
T ss_dssp HHCSCHHHHHHHHCHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHcCHHHHHHHHHHc
Confidence 99999977 9999999999998753
No 3
>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*
Probab=99.34 E-value=3.2e-12 Score=118.33 Aligned_cols=220 Identities=17% Similarity=0.226 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHhhhc-cccCCCCCCcccccccccCC--CeeEEEEEeeCCCCCcceeeeehhccccCC-CCccccce
Q 020001 72 PVRQLMVDLVSTVENTLD-SQLLPCTLPPDVQYYENQNG--TAQASLQIRSGLKSSLIDFILGSWVHSELP-TGAALNIT 147 (332)
Q Consensus 72 ~~r~lm~~L~s~ve~RL~-~~llPst~P~Dv~~y~n~~G--~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp-~GgalnIt 147 (332)
..--+...|+..|+++.+ ..|.|..+|+++.+-.+.-| .....=.++.++ +++= +|+..- .|..+.|.
T Consensus 16 ~~~pli~~La~~i~~~~~~~~l~p~~ip~~l~~~~~~~~~~~~~i~n~~yq~~---~fRk-----~r~~~~~~G~~lqVL 87 (248)
T 3i94_A 16 TLNPMIQQLALAIAASWQSLPLKPYQLPEDLGYVEGRLEGEKLVIENRCYQTP---QFRK-----MHLELAKVGKGLDIL 87 (248)
T ss_dssp GSCHHHHHHHHHHHHHHTTSCCEECCCGGGCCCEEECSSSCCEEEEEEEEECS---SEEE-----EEEEEEEETTTEEEE
T ss_pred ccChHHHHHHHHHHHHHhcCCCeecCCchhhhhhhcccCCCccEEEEEeecCc---hHHH-----HHHHHhhcCCCcEEE
Confidence 334577788888888755 45567778999988765322 222222333344 4441 223221 47799999
Q ss_pred eeeeecCCCCCCCceeeeeeeecCCeE-EEEEecCCccCCCCChhHHHHhhcCCChhHHHH-HhhhCCCcccccCcccce
Q 020001 148 SLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ-MLEKVPEVRPYFSSSLYL 225 (332)
Q Consensus 148 sL~v~L~pstDaPHF~~ElIq~sPtsl-vl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~-~lek~Pe~~PY~S~SLyv 225 (332)
+..+|.++..|.|=|.++|+.+ |... +.++||=|=.+ +.+|.++|++... .... .+.+.-+..|+-
T Consensus 88 n~V~fP~~~yDLPiFG~Dlv~~-~~~~~lailDlqPl~~---d~~y~~~Y~~~l~--~l~~~~f~~~r~l~~wg------ 155 (248)
T 3i94_A 88 HCVMFPEPLYGLPLFGCDIVAG-PGGVSAAIADLSPTQS---DRQLPAAYQKSLA--ELGQPEFEQQRELPPWG------ 155 (248)
T ss_dssp EEEEEECGGGTCCEEEEEEEEE-TTEEEEEEEEEECCST---TSCCCHHHHHHHH--HTCCCCCSSBCCCCGGG------
T ss_pred EEEEccCCCCCCCccceeEecc-CCceEEEEEECCCCCC---cccchHHHHHHHH--HhchhhhcCcccCCchh------
Confidence 9999999999999999999997 5554 68999999554 6677777776533 2111 111111122231
Q ss_pred eeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceecc
Q 020001 226 RCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 305 (332)
Q Consensus 226 Rs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~D 305 (332)
..+||..++++-.. -||. +.+-..+++.+++|++.+. .+.+++++++..+.++..---+...|.|
T Consensus 156 -~iFSp~~lf~Rp~~-----------~ee~--~~f~~~~~~Yl~~~~~~~~-~a~p~~~~~~~~~~~~Q~~Y~~~qaenD 220 (248)
T 3i94_A 156 -EIFSEYCLFIRPSN-----------VTEE--ERFVQRVVDFLQIHCHQSI-VAEPLSEAQTLEHRQGQIHYCQQQQKND 220 (248)
T ss_dssp -GGSCTTCEEECCCS-----------HHHH--HHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred -hhCCCceEEecCCC-----------HHHH--HHHHHHHHHHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHHHHHHhC
Confidence 25888888888321 1222 6677788999999999999 5777877666655555555556779999
Q ss_pred cCCCc-ccccChhhHHHHHHHH
Q 020001 306 LGSSF-PRLFGPQVASRVLGEI 326 (332)
Q Consensus 306 l~~~~-pRLFGqEvadRVv~ai 326 (332)
|+.-+ -+.||+|-|||.+..+
T Consensus 221 par~vL~~~FG~eWae~yi~~~ 242 (248)
T 3i94_A 221 KTRRVLEKAFGEAWAERYMSQV 242 (248)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHT
T ss_pred cHHHHHHHHhChHHHHHHHHHh
Confidence 99966 9999999999998653
No 4
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=99.11 E-value=2.1e-10 Score=106.45 Aligned_cols=215 Identities=17% Similarity=0.208 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhhhc--cccCCCCCCcccccccccCCCeeEEE--EEeeCCCCCcceeeeehhccccC-CCCcccccee
Q 020001 74 RQLMVDLVSTVENTLD--SQLLPCTLPPDVQYYENQNGTAQASL--QIRSGLKSSLIDFILGSWVHSEL-PTGAALNITS 148 (332)
Q Consensus 74 r~lm~~L~s~ve~RL~--~~llPst~P~Dv~~y~n~~G~a~gSL--~vrSG~~~S~IDf~l~SWlh~~l-p~GgalnIts 148 (332)
..++..|++.|+.+++ ..|.|..+|+++.+-.+..|+-...+ .++.++ +++- +|+.. =.|..+.|.+
T Consensus 22 ~p~l~~l~~~i~~~~~~~~~l~p~~lp~~l~~~~~~~~~~~l~i~n~~yq~~---~fRk-----~r~e~~~~G~~lqVLn 93 (253)
T 2g18_A 22 HPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLEGEKLTIENRCYQTP---QFRK-----MHLELAKVGNMLDILH 93 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCEECCCCGGGSEEEEEETTEEEEEEEEEEECS---SEEE-----EEEEEEEETTTEEEEE
T ss_pred cHHHHHHHHHHHHHHhccCCCeeccCchHHhhhhcccCCCceEEEEeeeecc---hhhh-----hHHhhhhcCCCcEEEE
Confidence 4578888999999988 56788889999988766444433222 334444 3332 13331 1477899999
Q ss_pred eeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHH-HHh---hhCCCcccccCcccc
Q 020001 149 LSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYR-QML---EKVPEVRPYFSSSLY 224 (332)
Q Consensus 149 L~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R-~~l---ek~Pe~~PY~S~SLy 224 (332)
..+|.+++.|.|=|.++++..+..-.+.++||=|=.+ +..|.++|++... ..+ ..+ .++|.+-.
T Consensus 94 ~V~fP~~~yDLPiFG~Dlv~~~~~~~l~ilDlqPl~~---d~~~~~~Y~~~L~--~L~~~~f~~~r~lp~wg~------- 161 (253)
T 2g18_A 94 CVMFPRPEYDLPMFGCDLVGGRGQISAAIADLSPVHL---DRTLPESYNSALT--SLNTLNFSQPRELPEWGN------- 161 (253)
T ss_dssp EEEEECTTSCCCEEEEEEEEETTEEEEEEEEEECSST---TCCCCHHHHHHHH--HSCCCCCSSBCCCCTTGG-------
T ss_pred EEEcCCCCCCCCeeeeeeeccCCceEEEEEECCCCCC---cccchHHHHHHHH--hhccccccccccCCchhh-------
Confidence 9999999999999999999995544557999977442 3344455554331 111 112 22333332
Q ss_pred eeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceec
Q 020001 225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI 304 (332)
Q Consensus 225 vRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~ 304 (332)
.+||..++++.... ||. +..-..+++.+++|++.+. .+.++..++.+.+.+.-.---+...|.
T Consensus 162 ---iFSp~~lf~Rp~~~-----------ee~--~aF~~~~~~yL~~~~~~~~-~a~~~~~~~~~~i~~~Q~~Y~~~qaen 224 (253)
T 2g18_A 162 ---IFSDFCIFVRPSSP-----------EEE--AMFLGRVREFLQVHCQGAI-AASPVSAEQKQQILAGQHNYCSKQQQN 224 (253)
T ss_dssp ---GSCTTCEEECCCSH-----------HHH--HHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hcCcceEEeccCch-----------HHH--HHHHHHHHHHHHHHHHHHH-hCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 58898888887542 121 4445557888888888888 466666555554444333334466899
Q ss_pred ccCCCc-ccccChhhHHHHHHH
Q 020001 305 DLGSSF-PRLFGPQVASRVLGE 325 (332)
Q Consensus 305 Dl~~~~-pRLFGqEvadRVv~a 325 (332)
||+--+ -+.||+|-|||.+..
T Consensus 225 Dpar~vL~~~FG~ewae~yi~~ 246 (253)
T 2g18_A 225 DKTRRVLEKAFGVDWAENYMTT 246 (253)
T ss_dssp CTHHHHHHHHHCHHHHHHHHHH
T ss_pred CcHHHHHHHHcCHHHHHHHHHh
Confidence 999865 999999999998865
No 5
>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*
Probab=98.67 E-value=2.6e-08 Score=91.99 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCccccccccc--CCCeeEEEEEeeCCCCCcceeeeehhccccCCCCccccceeeee
Q 020001 74 RQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQ--NGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSA 151 (332)
Q Consensus 74 r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~--~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~GgalnItsL~v 151 (332)
..++..|++.+ ..|.|..+|+++.+=... .+.+...=..+.++ +++-| |+.+-.|..+.|.+..+
T Consensus 25 ~p~i~~l~~~i-----~~L~p~~l~~~l~~~e~~~~~~~~~i~n~~y~s~---~fRK~-----r~~~~~g~~lqVLn~V~ 91 (233)
T 2vcl_A 25 QNYIDALFETF-----PQLEISEVWAKWDGGNVTKDGGDAKLTANIRTGE---HFLKA-----REAHIVDPNSDIYNTIL 91 (233)
T ss_dssp HHHHHHHHHHC-----TTCEEEEEEEEEEECC-----CCEEEEEEEEEET---TEEEE-----EEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHhc-----cCCcccCCchHhcccccccCCCceEEEehhhcCc---HHHHH-----HHHHhcCCCCeEEEEEe
Confidence 44555666665 388888899998754311 11122222223333 33322 33322378999999999
Q ss_pred ecCCCCCCCceeeeeeeecCCeEEE-EEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCC---CcccccCcccceee
Q 020001 152 YLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVP---EVRPYFSSSLYLRC 227 (332)
Q Consensus 152 ~L~pstDaPHF~~ElIq~sPtslvl-~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~P---e~~PY~S~SLyvRs 227 (332)
|.+++.|.|=|.++|+.. |+...+ ++||=|=. ++|++... ..- .-+++| ++.+|+|+-||+|
T Consensus 92 fP~~~yDLPiFG~Dlv~~-~~~~~lailDlqPl~---------~~Y~~~L~--~Lp-~~~~lp~fye~~~~FSp~lf~R- 157 (233)
T 2vcl_A 92 YPKTGADLPCFGMDLMKF-SDKKVIIVFDFQHPR---------EKYLFSVD--GLP-EDDGKYRFFEMGNHFSKNIFVR- 157 (233)
T ss_dssp EECBSSCCCEEEEEEEEE-ETTEEEEEEEEECSS---------TTCCCCCT--TSC-CCCSSSCCSCTTSSCCTTCEEE-
T ss_pred cCCCCCCCCccceeeecc-CCceEEEEEeCCccH---------HHHHHHHh--cCC-CCCCCCCccchhhccCCCeEEe-
Confidence 999999999999999999 556555 99998855 77777554 221 146778 8888888877777
Q ss_pred ecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCccc---chhhHHHHHHhhHHhhhcceec
Q 020001 228 VISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHV---GESDKAYLEKRDGLIKNKTIEI 304 (332)
Q Consensus 228 ~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v---~e~Er~~L~~RD~~IR~k~iE~ 304 (332)
| .. -+ .+...+ +..++.|+.|++.+.. +.++ -+.++.+.. ...|.
T Consensus 158 ---p-------~~-----------~~-e~~~~l-~af~~YL~~y~~~~~~-a~p~~~i~~~Q~~Y~~--------~q~en 205 (233)
T 2vcl_A 158 ---Y-------CK-----------PD-EVDQYL-DTFKLYLTKYKEMIDN-NKPVGEDTTVYSDFDT--------YMTEL 205 (233)
T ss_dssp ---E-------EC-----------GG-GGGGGH-HHHHHHHHHHHHHHHH-HCCCBCCGGGGHHHHH--------HHHHC
T ss_pred ---e-------CC-----------HH-HHHHHH-HHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHH--------HHHHh
Confidence 1 11 01 123556 8899999999999985 4444 334444432 33678
Q ss_pred ccCCCc-ccccChhhHHHHHHH
Q 020001 305 DLGSSF-PRLFGPQVASRVLGE 325 (332)
Q Consensus 305 Dl~~~~-pRLFGqEvadRVv~a 325 (332)
||+--+ -+.||+|-|||.+..
T Consensus 206 Dpar~vL~~~FG~eWae~yi~~ 227 (233)
T 2vcl_A 206 DPVRGYMKNKFGEGRSEAFVND 227 (233)
T ss_dssp --CCHHHHHHHCHHHHHHHHHH
T ss_pred CcHHHHHHHHcCHHHHHHHHHH
Confidence 998865 999999999999865
No 6
>2owy_A Recombination-associated protein RDGC; homologous recombination, RECA shaped DNA binding proteins, DNA binding protein; 2.50A {Pseudomonas aeruginosa}
Probab=51.06 E-value=34 Score=32.20 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHhhh-cCCcccchhhHHHHHH--hhHHhhh-------cceecccCCCccccc--ChhhHHHHHHHHHh
Q 020001 261 HPVAKQVIGIWLNQCA-CGGRHVGESDKAYLEK--RDGLIKN-------KTIEIDLGSSFPRLF--GPQVASRVLGEIQK 328 (332)
Q Consensus 261 ~p~A~evl~~WL~~c~-~~~~~v~e~Er~~L~~--RD~~IR~-------k~iE~Dl~~~~pRLF--GqEvadRVv~air~ 328 (332)
+++.|+.+..+..... .+++.++-.||..|+. ++.++.+ .-+.+|+.+++.-+. -.-.+|-+++.+||
T Consensus 77 asVvk~~l~ekv~~iE~~~grk~~rkEk~elKe~V~~~LLprAf~~~~~~~~~id~~~~~l~VdaaS~k~aE~~l~lLrk 156 (306)
T 2owy_A 77 GSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSSTFAAIAPSLGLILVDSASAKKAEDLLSTLRE 156 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHGGGCCEEEEEEEEEEEGGGTEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCccceEEEEEECCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 5567788888888776 3678899888888743 2333332 348999999887666 47789999999999
Q ss_pred hhc
Q 020001 329 VFT 331 (332)
Q Consensus 329 ~f~ 331 (332)
.||
T Consensus 157 tlg 159 (306)
T 2owy_A 157 ALG 159 (306)
T ss_dssp HHS
T ss_pred hhC
Confidence 997
No 7
>2owl_A Recombination-associated protein RDGC; replication, RECA; 2.40A {Escherichia coli}
Probab=37.25 E-value=56 Score=30.73 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHhhh-cCCcccchhhHHHHHH--hhHHhhh-------cceecccCCCccccc--ChhhHHHHHHHHHh
Q 020001 261 HPVAKQVIGIWLNQCA-CGGRHVGESDKAYLEK--RDGLIKN-------KTIEIDLGSSFPRLF--GPQVASRVLGEIQK 328 (332)
Q Consensus 261 ~p~A~evl~~WL~~c~-~~~~~v~e~Er~~L~~--RD~~IR~-------k~iE~Dl~~~~pRLF--GqEvadRVv~air~ 328 (332)
+++.|+.+..+..... .+++.++-.||..|+. ++.++.+ .-+.+|+.+++.-+. -.-.+|-+++.+||
T Consensus 77 asVvk~~l~ekv~~iE~~~grk~~rkEk~elKe~V~~~LLprAf~~~~~~~~~id~~~~~l~VdaaS~k~aE~~l~lLrk 156 (303)
T 2owl_A 77 SPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRK 156 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSSSTTHHHHHHHHHHTTTCEEEEEEEEEEEETTTTEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcCCccceEEEEEECCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 4567778888877777 4677888777777642 2233222 348999999886555 36789999999999
Q ss_pred hhc
Q 020001 329 VFT 331 (332)
Q Consensus 329 ~f~ 331 (332)
.||
T Consensus 157 tlg 159 (303)
T 2owl_A 157 SLG 159 (303)
T ss_dssp HHS
T ss_pred hhC
Confidence 997
No 8
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=21.62 E-value=1.5e+02 Score=27.09 Aligned_cols=107 Identities=6% Similarity=0.001 Sum_probs=60.2
Q ss_pred hCCCcccccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHH-------hhhcCCcc--
Q 020001 211 KVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLN-------QCACGGRH-- 281 (332)
Q Consensus 211 k~Pe~~PY~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~-------~c~~~~~~-- 281 (332)
+.-|+.+|.+..-. ..++..+++.-+. =++=.+...+||++..........+.|-+ .+...|-+
T Consensus 210 ~~~Ev~ky~~~~~h---~~~~~~~~~n~~~----w~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 282 (328)
T 3u65_B 210 GFYRYISYALDTKI---CPAVIGMLISDGS----WARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIV 282 (328)
T ss_dssp CGGGGCCEEECSCC---EEEEEEEEEEHHH----HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred chhhcCcEEEEcCc---cccceEEEEcHHH----HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 56678888776443 3345555555432 13334556667776666655555544433 34434433
Q ss_pred -cchhhHHHHHHhhHHhhhcceecccCCCcccccChhhHHHHHHHHHhh
Q 020001 282 -VGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKV 329 (332)
Q Consensus 282 -v~e~Er~~L~~RD~~IR~k~iE~Dl~~~~pRLFGqEvadRVv~air~~ 329 (332)
++++|++.+++.=+-+....++ .+...+|+|.-|++.+.+.++
T Consensus 283 ~~~~e~~~~~~~~~~~v~~~~~~-----~~~~~~g~~l~~~~~~~~~~~ 326 (328)
T 3u65_B 283 HLTPQEIQEWRTEFAADVKRIQA-----RLPGMLNMTLYEKIKHLLYSA 326 (328)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-----HSTTSBCHHHHHHHHHHHHC-
T ss_pred eCCHHHHHHHHHHHHHHHHHHHH-----HHhhhcCHHHHHHHHHHHHHh
Confidence 3567777776554444332221 123457999999999888763
No 9
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=20.97 E-value=79 Score=23.76 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=41.2
Q ss_pred HHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceecccCCCcccc--cChhhHHHHHHHHHhhh
Q 020001 255 IITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRL--FGPQVASRVLGEIQKVF 330 (332)
Q Consensus 255 Iv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~Dl~~~~pRL--FGqEvadRVv~air~~f 330 (332)
+|++.-...-.+.+..||..+. .+++.....|.++=..+. ...+.|+. .+-++ +|+..+.+|++.+.+-|
T Consensus 17 ~~~~~~~~~~~~~~~~~L~~Ip----gIG~~~A~~Ll~~fgs~~-~l~~as~~-eL~~i~GIG~~~a~~I~~~l~~~~ 88 (91)
T 2a1j_B 17 LLMEKLEQDFVSRVTECLTTVK----SVNKTDSQTLLTTFGSLE-QLIAASRE-DLALCPGLGPQKARRLFDVLHEPF 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTTST----TCCHHHHHHHHHHHSSHH-HHHSCCHH-HHHTSSSCCSHHHHHHHHHHHSCS
T ss_pred HHhhhccCCHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCHH-HHHhCCHH-HHHhCCCCCHHHHHHHHHHHhhhh
Confidence 5666666666777888887666 355544444444322121 11222221 23344 89999999999998755
No 10
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=14.91 E-value=80 Score=21.34 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=14.4
Q ss_pred HHhhchhhHHHHHHHHHHHhh
Q 020001 255 IITNHVHPVAKQVIGIWLNQC 275 (332)
Q Consensus 255 Iv~~~i~p~A~evl~~WL~~c 275 (332)
||--.+-.++...+++|||.=
T Consensus 8 IIaPivVGvvl~L~d~WLn~r 28 (33)
T 2kv5_A 8 VIAPIFVGLVLEMISRVLDEE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 444445556778899999853
Done!