Query 020001
Match_columns 332
No_of_seqs 43 out of 45
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020001.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020001hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gsua1 a.45.1.1 (A:85-217) Cl 19.4 5.9 0.00043 29.6 -1.6 41 190-233 87-128 (133)
2 d1nn5a_ c.37.1.1 (A:) Thymidyl 15.6 1.5E+02 0.011 23.1 6.3 26 171-197 124-158 (209)
3 d1m6ia2 c.3.1.5 (A:264-400) Ap 13.0 1.1E+02 0.0083 22.2 4.6 29 300-328 66-95 (137)
4 d2pd1a1 d.58.4.11 (A:1-100) Hy 11.7 59 0.0043 22.8 2.4 31 229-263 1-31 (100)
5 d1y14b2 d.230.1.1 (B:1-80) N-t 11.5 58 0.0042 22.7 2.2 20 311-330 15-34 (80)
6 d1i1ga2 d.58.4.2 (A:62-141) Lp 11.2 1.1E+02 0.0083 20.2 3.7 46 204-262 18-63 (80)
7 d1t3ua_ d.244.1.1 (A:) ZapA ho 11.1 1.8E+02 0.013 20.0 4.8 44 235-291 10-53 (92)
8 d1v7ba2 a.121.1.1 (A:75-175) T 10.8 84 0.0061 23.2 3.0 24 269-293 71-94 (101)
9 d2qy9a1 a.24.13.1 (A:201-284) 10.8 61 0.0045 22.6 2.1 16 314-329 40-55 (84)
10 d2giya1 b.1.1.1 (A:218-394) Al 10.6 27 0.002 29.1 0.1 15 16-32 64-78 (177)
No 1
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.41 E-value=5.9 Score=29.56 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=31.2
Q ss_pred hhHHHHhhcCCChhHHHHHhhhCCCcccccCcccce-eeecCcce
Q 020001 190 PDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYL-RCVISPSA 233 (332)
Q Consensus 190 pdYL~~yYE~t~ld~~R~~lek~Pe~~PY~S~SLyv-Rs~~SPTA 233 (332)
|+.++.| .+|.+..+.++.+|+++-|..+.-|. +.++.|||
T Consensus 87 ~~~l~~~---P~L~~~~~~v~~~P~Ik~yl~s~~~~~~P~~~~~~ 128 (133)
T d1gsua1 87 PDCPELQ---GNLSQFLQRFEALEKISAYMRSGRFMKAPIFWYTA 128 (133)
T ss_dssp TTCGGGS---SHHHHHHHHHHTSHHHHHHHTSSSCCCCCCSCTTC
T ss_pred cchhhhC---chHHHHHHHHHhCHHHHHHHcCCCcCCCCCCCccc
Confidence 3445554 56778888999999999998777776 46888876
No 2
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.56 E-value=1.5e+02 Score=23.08 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=16.5
Q ss_pred CCeEEEEEecCCc---------cCCCCChhHHHHhh
Q 020001 171 PSSLVLILDLSPR---------KDLVLHPDYLQTFY 197 (332)
Q Consensus 171 Ptslvl~LDL~PR---------kDLvl~pdYL~~yY 197 (332)
| .++++||..|- .|-..+.+|+++.+
T Consensus 124 P-Dl~i~Ld~~~e~~~~R~~~~~~~~E~~~~~~r~~ 158 (209)
T d1nn5a_ 124 P-DLVLFLQLQLADAAKRGAFGHERYENGAFQERAL 158 (209)
T ss_dssp C-SEEEEEECCHHHHHHC-----CTTCSHHHHHHHH
T ss_pred C-ceeeeecccHHHHhhhhcccccccccHHHHHHHH
Confidence 7 89999998862 23344566665543
No 3
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.00 E-value=1.1e+02 Score=22.17 Aligned_cols=29 Identities=3% Similarity=0.226 Sum_probs=21.7
Q ss_pred cceecccCC-CcccccChhhHHHHHHHHHh
Q 020001 300 KTIEIDLGS-SFPRLFGPQVASRVLGEIQK 328 (332)
Q Consensus 300 k~iE~Dl~~-~~pRLFGqEvadRVv~air~ 328 (332)
+..-++... -|+++|++++++.+...+++
T Consensus 66 ~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~ 95 (137)
T d1m6ia2 66 EVIQLFPEKGNMGKILPEYLSNWTMEKVRR 95 (137)
T ss_dssp EEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred EEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence 344455544 45999999999999888876
No 4
>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512 {Nitrosomonas europaea [TaxId: 915]}
Probab=11.72 E-value=59 Score=22.76 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=22.0
Q ss_pred cCcceEEEEeecccccCCCccchhHHHHhhchhhH
Q 020001 229 ISPSAIMVRVDTETETGAGESTRLDYIITNHVHPV 263 (332)
Q Consensus 229 ~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~ 263 (332)
|++-++++++++ -.|..+.++++++..+..+
T Consensus 1 M~~~~~~v~~~~----kpg~~~~~~~~l~~~~~~~ 31 (100)
T d2pd1a1 1 MTKLALFVRLEA----KPGQEAALADFLASALPLA 31 (100)
T ss_dssp TCCEEEEEEEEB----CTTCHHHHHHHHHHTHHHH
T ss_pred CceEEEEEEEEE----CCCcHHHHHHHHHHHHHHh
Confidence 567788999887 6677778877766555443
No 5
>d1y14b2 d.230.1.1 (B:1-80) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.46 E-value=58 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=18.3
Q ss_pred ccccChhhHHHHHHHHHhhh
Q 020001 311 PRLFGPQVASRVLGEIQKVF 330 (332)
Q Consensus 311 pRLFGqEvadRVv~air~~f 330 (332)
|.+||++.-+.+...|++-|
T Consensus 15 P~~~g~~~~~~i~~~L~~~~ 34 (80)
T d1y14b2 15 PSFFGPRMKQYLKTKLLEEV 34 (80)
T ss_dssp TTSCSTTHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHh
Confidence 89999999999999999855
No 6
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.17 E-value=1.1e+02 Score=20.17 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHhhhCCCcccccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhh
Q 020001 204 EYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHP 262 (332)
Q Consensus 204 ~~R~~lek~Pe~~PY~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p 262 (332)
+-.+.|.+.|++. .+-.+..+.-++.++.+. +.+.|+++|.++|..
T Consensus 18 ~v~~~l~~~peV~-------~~~~vtG~~D~~~~v~~~------d~~~l~~~l~~~i~~ 63 (80)
T d1i1ga2 18 EVAEKLKEYDFVK-------ELYLSSGDHMIMAVIWAK------DGEDLAEIISNKIGK 63 (80)
T ss_dssp HHHHHHHHSTTEE-------EECCCSSSSSEEEEEEES------SHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCCEe-------EEEEECCCCCEEEEEEEC------CHHHHHHHHHhhhcc
Confidence 3346788899986 667788899999999883 246677777666653
No 7
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.09 E-value=1.8e+02 Score=19.97 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=27.2
Q ss_pred EEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHH
Q 020001 235 MVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLE 291 (332)
Q Consensus 235 ~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~ 291 (332)
-|++.| ..|.++.+.+ |-+.|+..+..+....+.+++..-..|+
T Consensus 10 ~Y~i~c----~~~eee~l~~---------aA~~ln~k~~~l~~~~~~~~~~~~lvma 53 (92)
T d1t3ua_ 10 EYCINC----PDDERANLES---------AARYLDGKMREIRSSGKVIGADRVAVMA 53 (92)
T ss_dssp EEEECC----CTTTHHHHHH---------HHHHHHHHHHHHHTTTCSCSHHHHHHHH
T ss_pred EEEeeC----CccHHHHHHH---------HHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 478888 5666666632 3456778888888655555554444343
No 8
>d1v7ba2 a.121.1.1 (A:75-175) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=10.79 E-value=84 Score=23.24 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHhhhcCCcccchhhHHHHHHh
Q 020001 269 GIWLNQCACGGRHVGESDKAYLEKR 293 (332)
Q Consensus 269 ~~WL~~c~~~~~~v~e~Er~~L~~R 293 (332)
+.|+...- +..++++++|++|..|
T Consensus 71 GLWlse~l-~~~~ls~~~R~~l~~~ 94 (101)
T d1v7ba2 71 GLFVHDYI-HDDVLSKSKRQAMLET 94 (101)
T ss_dssp HHHHGGGT-SSSCCCHHHHHHHHHH
T ss_pred hHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 78998888 5788999999988765
No 9
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=10.76 E-value=61 Score=22.55 Aligned_cols=16 Identities=6% Similarity=0.337 Sum_probs=14.4
Q ss_pred cChhhHHHHHHHHHhh
Q 020001 314 FGPQVASRVLGEIQKV 329 (332)
Q Consensus 314 FGqEvadRVv~air~~ 329 (332)
+|.++|.+|+..||+.
T Consensus 40 vG~~tt~~ii~~lk~~ 55 (84)
T d2qy9a1 40 VGVETTRKIITNLTEG 55 (84)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999999974
No 10
>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E {Human herpesvirus 1 [TaxId: 10298]}
Probab=10.63 E-value=27 Score=29.10 Aligned_cols=15 Identities=53% Similarity=1.099 Sum_probs=12.0
Q ss_pred ccCCCcccccccCCCCC
Q 020001 16 LSHPSAPACRYLSPSRS 32 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (332)
+-||.+|+| |+|...
T Consensus 64 IfHP~ap~C--L~Pad~ 78 (177)
T d2giya1 64 LYHPQLPEC--LSPADA 78 (177)
T ss_dssp HHCTTSHHH--HSCSST
T ss_pred ccCCCcccc--cCCCCC
Confidence 569999999 778754
Done!