BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020002
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
Length = 325
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/336 (70%), Positives = 269/336 (80%), Gaps = 15/336 (4%)
Query: 1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
M S+Q PV CPA+R RQ G + V TG +K R S+ WG KG+ + T +
Sbjct: 1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55
Query: 58 RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
R N K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56 RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111
Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCAN 176
GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +A N Q A
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA- 170
Query: 177 CRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAIN 236
RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAIN
Sbjct: 171 -RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAIN 229
Query: 237 IAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNL 296
IAVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN+
Sbjct: 230 IAVRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNI 289
Query: 297 VRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
+ M+ A EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 290 LSKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/333 (66%), Positives = 265/333 (79%), Gaps = 5/333 (1%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
M SLQ PV CP+VR RQ G+ + + V K R R + WG + K++ +
Sbjct: 1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58
Query: 61 NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
+ R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR
Sbjct: 59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118
Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCRP 179
LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIV +A N Q A RP
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA--RP 176
Query: 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 239
T+YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAV
Sbjct: 177 TMYQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAV 236
Query: 240 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 299
RCKVPIQVNKYLAYSDGMRVI+SGKLS +P SDGLLFTELD+P+GQPC DTKEF+LVRN
Sbjct: 237 RCKVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRN 296
Query: 300 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 332
M+ A EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 297 MMQAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329
>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2
PE=2 SV=1
Length = 325
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 245/328 (74%), Gaps = 12/328 (3%)
Query: 3 SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
+++GP+ C AV + + N++ +G + A F + ++ +T + + + ++
Sbjct: 2 AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59
Query: 60 QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
A C +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60 NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115
Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCANCR 178
+LRCVHNN QG ++P+ AP PAIVL++EDG+ LLPIIV +A N A R
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIA--R 173
Query: 179 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 238
PT+YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIA
Sbjct: 174 PTIYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIA 233
Query: 239 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 298
VRCKVPIQV++ LAYSDG+R +E +++ + SDGLLFTELD+P GQPC++ +EF L+R
Sbjct: 234 VRCKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIR 293
Query: 299 NMLIAAVEERYRDAAQWRDKLGQLRAKR 326
NMLIAAVEERY+DAA WRDKL LR+KR
Sbjct: 294 NMLIAAVEERYKDAATWRDKLMLLRSKR 321
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/331 (49%), Positives = 228/331 (68%), Gaps = 9/331 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCA 175
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV T +A N +
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 176 NCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 235
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAI
Sbjct: 180 --RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAI 237
Query: 236 NIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFN 295
NIA RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+P QPC + +EF+
Sbjct: 238 NIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFD 296
Query: 296 LVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 326
LVRNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 297 LVRNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 287 bits (734), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 164/331 (49%), Positives = 228/331 (68%), Gaps = 9/331 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCA 175
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV T +A N +
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 176 NCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 235
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAI
Sbjct: 180 --RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAI 237
Query: 236 NIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFN 295
NIA RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+P QPC + +EF+
Sbjct: 238 NIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFD 296
Query: 296 LVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 326
LVRNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 297 LVRNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 164/331 (49%), Positives = 227/331 (68%), Gaps = 9/331 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-RTRDAKRVAYGGNAQCA 175
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV T +A N +
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 176 NCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 235
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAI
Sbjct: 180 --RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAI 237
Query: 236 NIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFN 295
NIA RCKVPIQVN+ +AY++G++V++ ++ SD T LD+P QPC + +EF+
Sbjct: 238 NIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFD 296
Query: 296 LVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 326
LVRNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 297 LVRNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis
GN=Rv1829 PE=4 SV=2
Length = 164
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 139 HPAIVLKMEDGTGLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRL 198
P ++L+ +G L PI + +A +A RP + +++++I +G+ ++
Sbjct: 17 QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQG-VEPPRPLTHDLIRDLIAALGHSLKE 74
Query: 199 VRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMR 258
VR+ ++A L + + RPSD++ IA+R VPI V + + G+
Sbjct: 75 VRIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLL 128
Query: 259 V 259
+
Sbjct: 129 I 129
>sp|Q1RK25|EX7L_RICBR Exodeoxyribonuclease 7 large subunit OS=Rickettsia bellii (strain
RML369-C) GN=xseA PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L E +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVENLQPAG 110
>sp|A8GXS3|EX7L_RICB8 Exodeoxyribonuclease 7 large subunit OS=Rickettsia bellii (strain
OSU 85-389) GN=xseA PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L E +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVENLQPAG 110
>sp|Q68W63|EX7L_RICTY Exodeoxyribonuclease 7 large subunit OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=xseA PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI V +DGM V+ GKLS++S S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILVKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAG 110
>sp|Q92GU6|EX7L_RICCN Exodeoxyribonuclease 7 large subunit OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=xseA PE=3 SV=2
Length = 444
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKITFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPTG 110
>sp|C3PPC7|EX7L_RICAE Exodeoxyribonuclease 7 large subunit OS=Rickettsia africae (strain
ESF-5) GN=xseA PE=3 SV=1
Length = 444
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPTG 110
>sp|Q4UMV4|EX7L_RICFE Exodeoxyribonuclease 7 large subunit OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=xseA PE=3 SV=2
Length = 450
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPAG 110
>sp|Q9KHS2|SSUD_PSESP Alkanesulfonate monooxygenase OS=Pseudomonas sp. GN=ssuD PE=3 SV=1
Length = 382
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 248 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 306
KYL SDG R ++ G L + +D L F + P+G+ C D+ LV LI E
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDSW---LVAASLIPVTE 70
>sp|Q9ZCP8|EX7L_RICPR Exodeoxyribonuclease 7 large subunit OS=Rickettsia prowazekii
(strain Madrid E) GN=xseA PE=3 SV=1
Length = 453
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 285
F+L+ + AI +A C PI +DGM V+ GKLS++S S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAG 110
>sp|Q4QNE5|EX7L_HAEI8 Exodeoxyribonuclease 7 large subunit OS=Haemophilus influenzae
(strain 86-028NP) GN=xseA PE=3 SV=1
Length = 439
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 197 RLVRVTKRVHEAYFAQLYLT-KVGNETECVS--FDLRPSDAINIAVRCKVPIQVNKYLAY 253
+L +++ E F+Q++LT ++ N T+ VS + L D N VRC + N +A+
Sbjct: 10 QLNSAARQMLEGNFSQIWLTGEISNFTQPVSGHWYLTLKDE-NAQVRCAMFRMKNLRVAF 68
Query: 254 --SDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 303
+GM+V+ +S + P D L + P+G+ L ++F ++ L A
Sbjct: 69 RPQNGMQVLVRANVSLYEPRGDYQLIIDSMHPAGEGLLQ-QQFEALKMKLAA 119
>sp|B0KH56|SSUD_PSEPG Alkanesulfonate monooxygenase OS=Pseudomonas putida (strain GB-1)
GN=ssuD PE=3 SV=1
Length = 382
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 248 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 291
KYL SDG R ++ G L + +D L F + P+G+ C D+
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDS 58
>sp|Q9KHR3|SSUD_BUTSP Alkanesulfonate monooxygenase OS=Buttiauxella sp. (strain PNBS)
GN=ssuD PE=3 SV=1
Length = 382
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 249 KYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 291
KYL SDG R ++ G L + +D L F + P+G+ C D+
Sbjct: 16 KYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDS 58
>sp|Q63SI0|HUTI_BURPS Imidazolonepropionase OS=Burkholderia pseudomallei (strain K96243)
GN=hutI PE=3 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 151 GLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGY------EVRLVRVTKR 204
G ++ + TRDA A A CA RP L + V + K GY E R++RV ++
Sbjct: 98 GGIVSTVRATRDASEAALFEQA-CARLRPLLAEGVTAIEIKSGYGLELASERRMLRVARQ 156
Query: 205 VHEAYFAQLYLTKVG 219
+ E + +Y T +G
Sbjct: 157 LGERFPVSVYTTFLG 171
>sp|Q3JQH7|HUTI_BURP1 Imidazolonepropionase OS=Burkholderia pseudomallei (strain 1710b)
GN=hutI PE=3 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 151 GLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGY------EVRLVRVTKR 204
G ++ + TRDA A A CA RP L + V + K GY E R++RV ++
Sbjct: 98 GGIVSTVRATRDASEAALFEQA-CARLRPLLAEGVTAIEIKSGYGLELASERRMLRVARQ 156
Query: 205 VHEAYFAQLYLTKVG 219
+ E + +Y T +G
Sbjct: 157 LGERFPVSVYTTFLG 171
>sp|A3NX99|HUTI_BURP0 Imidazolonepropionase OS=Burkholderia pseudomallei (strain 1106a)
GN=hutI PE=3 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 151 GLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGY------EVRLVRVTKR 204
G ++ + TRDA A A CA RP L + V + K GY E R++RV ++
Sbjct: 98 GGIVSTVRATRDASEAALFEQA-CARLRPLLAEGVTAIEIKSGYGLELASERRMLRVARQ 156
Query: 205 VHEAYFAQLYLTKVG 219
+ E + +Y T +G
Sbjct: 157 LGERFPVSVYTTFLG 171
>sp|Q62LJ2|HUTI_BURMA Imidazolonepropionase OS=Burkholderia mallei (strain ATCC 23344)
GN=hutI PE=3 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 151 GLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGY------EVRLVRVTKR 204
G ++ + TRDA A A CA RP L + V + K GY E R++RV ++
Sbjct: 98 GGIVSTVRATRDASEAALFEQA-CARLRPLLAEGVTAIEIKSGYGLELASERRMLRVARQ 156
Query: 205 VHEAYFAQLYLTKVG 219
+ E + +Y T +G
Sbjct: 157 LGERFPVSVYTTFLG 171
>sp|A3NBG6|HUTI_BURP6 Imidazolonepropionase OS=Burkholderia pseudomallei (strain 668)
GN=hutI PE=3 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 151 GLLLPIIVRTRDAKRVAYGGNAQCANCRPTLYQVVKEMIEKMGY------EVRLVRVTKR 204
G ++ + TRDA A A CA RP L + V + K GY E R++RV ++
Sbjct: 98 GGIVSTVRATRDASEAALFEQA-CARLRPLLAEGVTAIEIKSGYGLELASERRMLRVARQ 156
Query: 205 VHEAYFAQLYLTKVG 219
+ E + +Y T +G
Sbjct: 157 LGERFPVSVYTTFLG 171
>sp|P43913|EX7L_HAEIN Exodeoxyribonuclease 7 large subunit OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=xseA PE=3
SV=1
Length = 439
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 197 RLVRVTKRVHEAYFAQLYLT-KVGNETECVS--FDLRPSDAINIAVRCKVPIQVNKYLAY 253
+L +++ E F Q++LT ++ N T+ VS + L D N VRC + N +A+
Sbjct: 10 QLNSAARQMLEGNFCQIWLTGEISNFTQPVSGHWYLTLKDE-NAQVRCAMFRMKNLRVAF 68
Query: 254 --SDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 303
+GM+V+ +S + P D L + P+G+ L ++F ++ L A
Sbjct: 69 RPQNGMQVLVRANVSLYEPRGDYQLIIDSMHPAGEGLLQ-QQFEALKMKLAA 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,832,475
Number of Sequences: 539616
Number of extensions: 5208173
Number of successful extensions: 12583
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12562
Number of HSP's gapped (non-prelim): 26
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)