Query 020002
Match_columns 332
No_of_seqs 245 out of 794
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 8.7E-35 1.9E-39 249.6 14.3 124 132-261 7-131 (135)
2 COG1259 Uncharacterized conser 100.0 1.6E-32 3.6E-37 240.4 15.6 125 132-261 12-137 (151)
3 PF02151 UVR: UvrB/uvrC motif; 98.2 2.8E-06 6.1E-11 58.1 4.9 34 292-325 2-36 (36)
4 COG3880 Modulator of heat shoc 98.1 2.9E-06 6.3E-11 76.4 5.0 39 289-327 133-172 (176)
5 PRK05298 excinuclease ABC subu 94.5 0.052 1.1E-06 58.0 5.3 37 292-328 613-650 (652)
6 COG0556 UvrB Helicase subunit 94.3 0.062 1.3E-06 56.8 5.0 36 292-327 624-660 (663)
7 TIGR00631 uvrb excinuclease AB 93.6 0.069 1.5E-06 57.3 4.0 31 293-323 624-655 (655)
8 PRK00558 uvrC excinuclease ABC 93.1 0.11 2.5E-06 55.1 4.6 34 293-326 203-237 (598)
9 PRK07883 hypothetical protein; 92.8 0.13 2.8E-06 54.2 4.6 31 294-324 408-439 (557)
10 PRK12306 uvrC excinuclease ABC 92.0 0.2 4.3E-06 52.6 4.7 31 294-324 194-225 (519)
11 PRK14666 uvrC excinuclease ABC 91.6 0.22 4.8E-06 54.0 4.6 33 293-325 202-235 (694)
12 PRK14668 uvrC excinuclease ABC 91.2 0.27 5.8E-06 52.2 4.8 31 294-324 201-232 (577)
13 TIGR00194 uvrC excinuclease AB 91.2 0.27 5.9E-06 52.2 4.7 31 294-324 196-227 (574)
14 PRK14667 uvrC excinuclease ABC 91.0 0.27 5.9E-06 52.1 4.5 32 293-324 200-232 (567)
15 PRK14672 uvrC excinuclease ABC 91.0 0.27 5.8E-06 53.3 4.6 31 294-324 207-238 (691)
16 PRK14670 uvrC excinuclease ABC 90.9 0.28 6.1E-06 52.1 4.5 31 294-324 179-210 (574)
17 PRK14671 uvrC excinuclease ABC 90.6 0.31 6.7E-06 52.2 4.6 31 294-324 217-248 (621)
18 PRK14669 uvrC excinuclease ABC 90.6 0.31 6.7E-06 52.3 4.5 31 294-324 205-236 (624)
19 COG0322 UvrC Nuclease subunit 87.6 0.69 1.5E-05 49.3 4.6 33 293-325 203-236 (581)
20 PF12386 Peptidase_C71: Pseudo 51.8 47 0.001 29.4 6.0 41 179-219 58-99 (142)
21 PF14305 ATPgrasp_TupA: TupA-l 50.7 41 0.00088 31.8 6.0 47 171-219 172-220 (239)
22 PF10130 PIN_2: PIN domain; I 40.2 21 0.00045 31.1 2.1 32 227-258 90-121 (133)
23 PF11464 Rbsn: Rabenosyn Rab b 35.9 1.1E+02 0.0023 22.1 4.8 35 292-326 3-38 (42)
24 TIGR00638 Mop molybdenum-pteri 31.2 1.5E+02 0.0032 21.6 5.3 51 196-248 8-58 (69)
25 PRK13169 DNA replication intia 30.3 1.1E+02 0.0024 26.1 4.9 34 291-324 21-57 (110)
26 PF13670 PepSY_2: Peptidase pr 30.2 1.7E+02 0.0037 22.7 5.7 47 180-230 29-75 (83)
27 KOG4825 Component of synaptic 30.1 36 0.00078 36.1 2.3 34 292-325 207-241 (666)
28 COG5509 Uncharacterized small 27.5 72 0.0016 24.9 3.0 26 305-330 27-52 (65)
29 PF13793 Pribosyltran_N: N-ter 25.6 1.5E+02 0.0032 25.0 4.9 41 179-219 7-47 (116)
30 PF04420 CHD5: CHD5-like prote 24.1 52 0.0011 29.3 2.0 36 292-327 47-83 (161)
31 PRK10947 global DNA-binding tr 22.9 2E+02 0.0042 25.4 5.3 33 291-323 23-55 (135)
32 PHA02571 a-gt.4 hypothetical p 20.9 2.3E+02 0.0049 24.4 5.0 35 290-324 12-51 (109)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=8.7e-35 Score=249.57 Aligned_cols=124 Identities=29% Similarity=0.450 Sum_probs=103.8
Q ss_pred ccCCCCCCcEEEEEEcCCCceEEEEEecHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 020002 132 HLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDA-KRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 210 (332)
Q Consensus 132 ~Ld~~a~~p~IVL~~edg~~r~LPI~Ig~~EA-aI~~aL~~~~~~~~RPlThDLl~~iLe~lg~~v~~V~I~~~~dGvFy 210 (332)
.++...++|++||++++++ +.||||||..|| +|..++.+.+++ ||+|||||.++++++|.++++|+|++++||+||
T Consensus 7 ~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~--RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~ 83 (135)
T PF02577_consen 7 SVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPP--RPLTHDLLSDLLEALGAEVERVVIDDLEDGVFY 83 (135)
T ss_dssp EEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---S--S--HHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred EEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEE
Confidence 3444567899999999876 899999999999 999999999999 999999999999999999999999999999999
Q ss_pred EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020002 211 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 261 (332)
Q Consensus 211 A~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~i~e 261 (332)
|+|++.+++ +++++|+||||||+||+|+++||||+++|++++|+++..
T Consensus 84 A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~ 131 (135)
T PF02577_consen 84 ARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE 131 (135)
T ss_dssp EEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred EEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence 999998776 789999999999999999999999999999999999874
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=240.41 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=113.4
Q ss_pred ccCCCCCCcEEEEEEcCCCceEEEEEecHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 020002 132 HLPDYAPHPAIVLKMEDGTGLLLPIIVRTRDA-KRVAYGGNAQCANCRPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 210 (332)
Q Consensus 132 ~Ld~~a~~p~IVL~~edg~~r~LPI~Ig~~EA-aI~~aL~~~~~~~~RPlThDLl~~iLe~lg~~v~~V~I~~~~dGvFy 210 (332)
++.+-...|++++...+++++.||||||..|| +|+.++++..+| ||+||||+.++++.++.++++|+|++++|||||
T Consensus 12 ~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~--RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy 89 (151)
T COG1259 12 FFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPP--RPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY 89 (151)
T ss_pred EEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCC--CCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence 34445667766666667777899999999999 999999999999 999999999999999999999999999999999
Q ss_pred EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020002 211 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 261 (332)
Q Consensus 211 A~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~i~e 261 (332)
|+|++++++ ....+||||||||+||+|.++||||.|+|+++++++..+
T Consensus 90 A~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~ 137 (151)
T COG1259 90 ATLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED 137 (151)
T ss_pred EEEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence 999999887 569999999999999999999999999999999888654
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.20 E-value=2.8e-06 Score=58.09 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002 292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 325 (332)
Q Consensus 292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 325 (332)
..+..|+..|..|++ ++||+||.|||+|..|+++
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 457889999999998 9999999999999999864
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.14 E-value=2.9e-06 Score=76.43 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020002 289 LDTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 327 (332)
Q Consensus 289 ~~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 327 (332)
..+.++.+|++.|+++|+ |+||+||.+||||+.|+.+..
T Consensus 133 ~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~ 172 (176)
T COG3880 133 NPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG 172 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346889999999999999 999999999999999997643
No 5
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.51 E-value=0.052 Score=57.96 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhcc
Q 020002 292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRNL 328 (332)
Q Consensus 292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~~ 328 (332)
..++.|+++|++|.+ ++||+||++||+|+.|++....
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~~ 650 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELLG 650 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 456778888888887 9999999999999999876543
No 6
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.26 E-value=0.062 Score=56.76 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020002 292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 327 (332)
Q Consensus 292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 327 (332)
+.++.|+..|.+|.+ -+||+||++||+|++|++...
T Consensus 624 ~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~ 660 (663)
T COG0556 624 KLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL 660 (663)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 456778877777766 999999999999999997653
No 7
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.56 E-value=0.069 Score=57.28 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHH
Q 020002 293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR 323 (332)
Q Consensus 293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~ 323 (332)
.++.|+++|++|.+ ++||+||++||+|+.|+
T Consensus 624 ~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 624 LIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 35678888888887 99999999999999874
No 8
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=93.07 E-value=0.11 Score=55.14 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020002 293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 326 (332)
Q Consensus 293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~ 326 (332)
-++.|++.|++|.+ ++||+||.+||+|..|++-.
T Consensus 203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~ 237 (598)
T PRK00558 203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQ 237 (598)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 45778888888887 99999999999999998644
No 9
>PRK07883 hypothetical protein; Validated
Probab=92.80 E-value=0.13 Score=54.20 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|.+ .+||+||++||+|..++.
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 439 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDRLAALLR 439 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4678888888887 999999999999999985
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=91.97 E-value=0.2 Score=52.60 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|-+ .+||+||++||.|..++.
T Consensus 194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 194 IEKLEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4678888888887 999999999999999985
No 11
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=91.57 E-value=0.22 Score=53.97 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002 293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 325 (332)
Q Consensus 293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 325 (332)
-++.|++.|++|.+ .+||+||++||+|+.++.-
T Consensus 202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~ 235 (694)
T PRK14666 202 LVDALRTEMEAASEALEFERAAVLRDQIRAVERT 235 (694)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35778888888887 9999999999999999753
No 12
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=91.20 E-value=0.27 Score=52.23 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 201 ~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 201 ADPLRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4678888888887 999999999999999985
No 13
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.18 E-value=0.27 Score=52.19 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 227 (574)
T TIGR00194 196 IKELEQKMEKASENLEFEEAARIRDQIAAVRE 227 (574)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4668888888877 999999999999999985
No 14
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=91.01 E-value=0.27 Score=52.14 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
-++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 232 (567)
T PRK14667 200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALEN 232 (567)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34678888888877 999999999999999875
No 15
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=91.00 E-value=0.27 Score=53.25 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~ 238 (691)
T PRK14672 207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRC 238 (691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4678888888887 999999999999999984
No 16
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=90.89 E-value=0.28 Score=52.10 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~ 210 (574)
T PRK14670 179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE 210 (574)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4668888888887 999999999999999975
No 17
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=90.61 E-value=0.31 Score=52.21 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~ 248 (621)
T PRK14671 217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKR 248 (621)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4678888888877 999999999999999974
No 18
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=90.58 E-value=0.31 Score=52.27 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020002 294 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 324 (332)
Q Consensus 294 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 324 (332)
++.|++.|++|.+ .+||+||++||+|+.++.
T Consensus 205 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 236 (624)
T PRK14669 205 ARSLRARMEAAALEMQFELAAKYRDLITTVEE 236 (624)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4678888888877 999999999999999875
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=87.63 E-value=0.69 Score=49.33 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002 293 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 325 (332)
Q Consensus 293 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 325 (332)
-+..|++.|++|-+ .+||.||++||.|..++.-
T Consensus 203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l 236 (581)
T COG0322 203 VLQELEEKMEEASENLDFERAARLRDQIKALEKL 236 (581)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 35678888888877 9999999999999999753
No 20
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=51.80 E-value=47 Score=29.37 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhCCEEeEEEEEeE-ECCEEEEEEEEeecC
Q 020002 179 PTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVG 219 (332)
Q Consensus 179 PlThDLl~~iLe~lg~~v~~V~I~~~-~dGvFyA~L~l~~~g 219 (332)
-..-+|+..+++.||+.|.-+.+--. .+|++|..+.|.-.+
T Consensus 58 tD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~ 99 (142)
T PF12386_consen 58 TDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKH 99 (142)
T ss_pred hhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecc
Confidence 45679999999999998776666544 699999999998765
No 21
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=50.70 E-value=41 Score=31.76 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=40.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh--CCEEeEEEEEeEECCEEEEEEEEeecC
Q 020002 171 NAQCANCRPTLYQVVKEMIEKM--GYEVRLVRVTKRVHEAYFAQLYLTKVG 219 (332)
Q Consensus 171 ~~~~~~~RPlThDLl~~iLe~l--g~~v~~V~I~~~~dGvFyA~L~l~~~g 219 (332)
....+ +|...+=|.++.+.| +....||-.+...+++||..|.+..++
T Consensus 172 ~~~~~--kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 172 DEDIP--KPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGA 220 (239)
T ss_pred CCCCC--CChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCC
Confidence 34566 999999999999999 467788888999999999999998665
No 22
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=40.20 E-value=21 Score=31.08 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=26.0
Q ss_pred EeCChHHHHHHHHHcCCCEEEehhhHhccCee
Q 020002 227 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMR 258 (332)
Q Consensus 227 IDaRPSDAIaLAlR~k~PIyV~e~Vl~~agi~ 258 (332)
+|-.=-.-||||+..+|||+..+.=+...|+.
T Consensus 90 ~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl~ 121 (133)
T PF10130_consen 90 RDPDDWPFVALALQLNAPIWTEDKDLFGSGLA 121 (133)
T ss_pred CCcchHHHHHHHHHcCCCeecCcHHHHhcCcc
Confidence 45555567999999999999999988777765
No 23
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=35.87 E-value=1.1e+02 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020002 292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 326 (332)
Q Consensus 292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~ 326 (332)
.++..++.+++.|-. -+||+.+.|..-|+.|+...
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 467889999999998 99999999999999988654
No 24
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=31.21 E-value=1.5e+02 Score=21.57 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=39.3
Q ss_pred EeEEEEEeEECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEe
Q 020002 196 VRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 248 (332)
Q Consensus 196 v~~V~I~~~~dGvFyA~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~ 248 (332)
.....|.++..+...+++.+..++. ..+...+-+..+-.|+++-+.|+|+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 4556777777777788888887552 35666777889999999999999875
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.29 E-value=1.1e+02 Score=26.12 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHH---HHHHHHhHHh
Q 020002 291 TKEFNLVRNMLIAAVEERYRDAAQ---WRDKLGQLRA 324 (332)
Q Consensus 291 ~~e~~~L~~~L~~aieE~YE~AA~---lRDeI~~l~~ 324 (332)
..++..|++.+...++||-+.-.+ ||+.|.++++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999999999887665 8999988743
No 26
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.21 E-value=1.7e+02 Score=22.69 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEeecCccceEEEEeCC
Q 020002 180 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLR 230 (332)
Q Consensus 180 lThDLl~~iLe~lg~~v~~V~I~~~~dGvFyA~L~l~~~g~~~e~~~IDaR 230 (332)
++..-+...++..|++|.+|.+.+ +|.|-.+....++. .-.+.+|.+
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~--~~ev~vD~~ 75 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGK--KVEVYVDPA 75 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCC--EEEEEEcCC
Confidence 457777888888999999998864 77899885554432 244455554
No 27
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=30.14 E-value=36 Score=36.07 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020002 292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 325 (332)
Q Consensus 292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 325 (332)
++++++++.--.||+ |+|..|-...|||.+++.+
T Consensus 207 eeleelEndKgcAVadEDfdlAkdkkdeiealRae 241 (666)
T KOG4825|consen 207 EELEELENDKGCAVADEDFDLAKDKKDEIEALRAE 241 (666)
T ss_pred HHHHHHhhcccccccchhhhHHHHHHHHHHHHHHH
Confidence 344555555556676 8888888888888877754
No 28
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=27.54 E-value=72 Score=24.85 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHhhhHHHHHHHHHHHhHHhhhcccc
Q 020002 305 VEERYRDAAQWRDKLGQLRAKRNLRK 330 (332)
Q Consensus 305 ieE~YE~AA~lRDeI~~l~~~~~~~~ 330 (332)
|.|--|+-|.|++||.+++.+.+.|+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33555778999999999998887665
No 29
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=25.62 E-value=1.5e+02 Score=25.03 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEeecC
Q 020002 179 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVG 219 (332)
Q Consensus 179 PlThDLl~~iLe~lg~~v~~V~I~~~~dGvFyA~L~l~~~g 219 (332)
+...+|-..+.+.||..+..+.+..+.||-.|.++--.-.|
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g 47 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRG 47 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TT
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccC
Confidence 46688999999999999999999999999999988665444
No 30
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.09 E-value=52 Score=29.30 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020002 292 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 327 (332)
Q Consensus 292 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 327 (332)
.|+..+++++.+.=. ++|-+.|++|-++++++++.+
T Consensus 47 ~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~ 83 (161)
T PF04420_consen 47 KEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELE 83 (161)
T ss_dssp HHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555433 899999999999999887653
No 31
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=22.90 E-value=2e+02 Score=25.39 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHhHH
Q 020002 291 TKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLR 323 (332)
Q Consensus 291 ~~e~~~L~~~L~~aieE~YE~AA~lRDeI~~l~ 323 (332)
-.+++.+.+.|..+|+|+-|+++..+.++..+.
T Consensus 23 ~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~ 55 (135)
T PRK10947 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERT 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777788888877776666665555543
No 32
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=20.90 E-value=2.3e+02 Score=24.41 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHHHHHH-hhhHHHHHH----HHHHHhHHh
Q 020002 290 DTKEFNLVRNMLIAAVE-ERYRDAAQW----RDKLGQLRA 324 (332)
Q Consensus 290 ~~~e~~~L~~~L~~aie-E~YE~AA~l----RDeI~~l~~ 324 (332)
...+++.+...+++.++ |.=.+|+++ |-||+||+.
T Consensus 12 ~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~ 51 (109)
T PHA02571 12 TDEEVEELLSELQARNEAEAEKKAAKILKKNRREIKRLKK 51 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34557888888888888 888888887 789999874
Done!