BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020003
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 258 bits (658), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 197/337 (58%), Gaps = 6/337 (1%)
Query: 1 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
+DW NLGF + Y + ++ G+L+ + +S SS L+YGQ FEG+KAYR
Sbjct: 9 LDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYR 68
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY 119
+DG + LFRP+ NA RLQ A+R+ MP D+FIDA KQ AN+ +VPP G G +LY
Sbjct: 69 TKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLY 128
Query: 120 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179
+RPLL+G G ++G+ PA EY F +FA PVGNYFK GLAP N ++D++ RA P G G K
Sbjct: 129 LRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAK 188
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGTI 238
NYA L A R FSDV+YLD +EEV S N F I K N TP S +I
Sbjct: 189 VGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPSI 247
Query: 239 LAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIE 297
L +T+ S++ +A G + E + VDEL + E GTA V++P+G + +
Sbjct: 248 LPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHV 307
Query: 298 F--KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
F +T V+ +LY L GIQ G +K +GW +++
Sbjct: 308 FYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 204/341 (59%), Gaps = 13/341 (3%)
Query: 5 NLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR D
Sbjct: 33 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 92
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRP 122
G +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G + SLY+RP
Sbjct: 93 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 152
Query: 123 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 182
++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 153 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 212
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTI 238
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP SG++
Sbjct: 213 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 272
Query: 239 LAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVAPVGSITYR 292
L GITR S++++A+D GF VEER I VDE E EVF GTA V+ PV + +
Sbjct: 273 LPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHH 332
Query: 293 GKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
G ++ L TL GIQ G D GW +N
Sbjct: 333 DGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 204/341 (59%), Gaps = 13/341 (3%)
Query: 5 NLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR D
Sbjct: 32 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 91
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRP 122
G +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G + SLY+RP
Sbjct: 92 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 151
Query: 123 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 182
++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 152 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 211
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTI 238
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP SG++
Sbjct: 212 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 271
Query: 239 LAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVAPVGSITYR 292
L GITR S++++A+D GF VEER I VDE E EVF GTA V+ PV + +
Sbjct: 272 LPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHH 331
Query: 293 GKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
G ++ L TL GIQ G D GW +N
Sbjct: 332 DGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/339 (39%), Positives = 193/339 (56%), Gaps = 13/339 (3%)
Query: 7 GFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQ 65
GFG D+M ++ + + R+ YG IEL PS+ VL+Y Q +FEG+KAYR DG
Sbjct: 30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 66 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLL 124
+V FR D NA RL++ A R+ +P FI++++Q +K WVP G + +LY+RP +
Sbjct: 90 IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 125 VGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 184
+ P LG+ PA +Y +L+ ASP G YFK G+AP++++V E+ RA PGG G K NY
Sbjct: 150 FATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNY 209
Query: 185 APVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTILA 240
A L A + A G V++LD+V ++ +EE+ NIF + G+ + TP SG++L
Sbjct: 210 AASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLP 269
Query: 241 GITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVAPVGSITYRGK 294
GITR S++++A D GF VEER I +DE E EVF GTA V+ PV + +
Sbjct: 270 GITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGAS 329
Query: 295 RIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
G V+ L TL GIQ G D GW +
Sbjct: 330 EFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARLG 368
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 188/337 (55%), Gaps = 8/337 (2%)
Query: 1 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
+DW LGF D Y + ++ G L+ +I L+ S L+YGQ FEG+KAYR
Sbjct: 24 IDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYR 83
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLY 119
DG + LFRPDQNA R++ R+ MP S +QFIDA Q AN+ ++PP G GSLY
Sbjct: 84 CADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLY 143
Query: 120 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179
+RP ++G G +G+ APE+ F VF PVG YFK GL P N ++ ++ RA P G G K
Sbjct: 144 LRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTN-FITSDYDRAAPHGTGAAK 202
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL--KGNIISTPATSGT 237
NYA L AK R F+DV+YLD +EE + N F + G TP S +
Sbjct: 203 VGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTP-QSPS 261
Query: 238 ILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 296
IL IT+ S++ +A G +VEE I +DEL + E GTA V+ P+G I +
Sbjct: 262 ILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFH 321
Query: 297 EFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 331
F + ++ V+R LY LVGIQ G + +GW V++
Sbjct: 322 VFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 183/345 (53%), Gaps = 21/345 (6%)
Query: 2 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 120
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 121 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 179
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPAT 234
NY L A A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 223 MGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 281
Query: 235 SGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVG 287
G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA VV PV
Sbjct: 282 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVS 341
Query: 288 SITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 329
I Y+G+ I T G + SR + S L IQ G ++ + WT+
Sbjct: 342 DILYKGETIHIPTMENGPKLASR-ILSKLTDIQYG--REERDWTI 383
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 21/345 (6%)
Query: 2 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 23 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 82
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 120
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 83 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 142
Query: 121 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 179
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 143 RPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 202
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPAT 234
NY L A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 203 MGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 261
Query: 235 SGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVG 287
G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA VV PV
Sbjct: 262 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVS 321
Query: 288 SITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 329
I Y+G+ I T G + SR L S L IQ G ++ WT+
Sbjct: 322 DILYKGETIHIPTMENGPKLASRIL-SKLTDIQYG--REESDWTI 363
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 167/310 (53%), Gaps = 14/310 (4%)
Query: 4 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 123
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 124 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 237
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 238 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 290
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA VAPV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRIL 324
Query: 291 YRGKRIEFKT 300
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 167/310 (53%), Gaps = 14/310 (4%)
Query: 4 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 123
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 124 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 237
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 238 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 290
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA VAPV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRIL 324
Query: 291 YRGKRIEFKT 300
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 14/310 (4%)
Query: 4 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 123
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 124 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 237
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 238 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 290
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRIL 324
Query: 291 YRGKRIEFKT 300
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 14/310 (4%)
Query: 4 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 123
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 124 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 237
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 238 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 290
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 291 YRGKRIEFKT 300
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 14/310 (4%)
Query: 4 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 123
Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 124 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 237
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 238 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 290
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 291 YRGKRIEFKT 300
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 14/310 (4%)
Query: 4 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 63
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 64 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 123
Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP SL +RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPV 145
Query: 124 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 237
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 238 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 290
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 291 YRGKRIEFKT 300
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 157/323 (48%), Gaps = 21/323 (6%)
Query: 16 MYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNA 75
M T K +F G + R+ ++ S L+YG +FEG++ Y G +V FR ++
Sbjct: 1 MTTKKADYIWF-NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHM 58
Query: 76 IRLQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA 134
RL A+ P S SID+ ++A + N S YIRPL+ +G+
Sbjct: 59 QRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVN 111
Query: 135 PAPEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKA 190
P Y+ ++ A P G Y E L + ++RA P KA NY L
Sbjct: 112 PPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLV 171
Query: 191 ISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEI 250
S A+ G+ + + LD VN + E + N+F +K ++ TP + + L GITR +II++
Sbjct: 172 GSEARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKL 229
Query: 251 ASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSREL 309
A + G +V E+ + + L ADEVF +GTA + PV S+ G ++ E + G V++ +
Sbjct: 230 AKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRCG--PVTKRI 285
Query: 310 YSTLVGIQTGLIKDNKGWTVEIN 332
G+ TG +D GW ++N
Sbjct: 286 QQAFFGLFTGETEDKWGWLDQVN 308
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 157/321 (48%), Gaps = 20/321 (6%)
Query: 18 TMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIR 77
T K ++ + G + R+ ++ S L+YG +FEG++ Y G +V FR ++ R
Sbjct: 1 TTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQR 59
Query: 78 LQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 136
L A+ P S SID+ ++A + N S YIRPL+ +G+ P
Sbjct: 60 LHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPP 112
Query: 137 PEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS 192
Y+ ++ A P G Y E L + ++RA P KA NY L S
Sbjct: 113 AGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGS 172
Query: 193 RAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIAS 252
A+ G+ + + LD VN + E + N+F +K ++ TP + + L GITR +II++A
Sbjct: 173 EARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK 230
Query: 253 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELYS 311
+ G +V E+ + + L ADEVF +GTA + PV S+ G ++ E + G V++ +
Sbjct: 231 ELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRCG--PVTKRIQQ 286
Query: 312 TLVGIQTGLIKDNKGWTVEIN 332
G+ TG +D GW ++N
Sbjct: 287 AFFGLFTGETEDKWGWLDQVN 307
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 12/267 (4%)
Query: 29 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 88
G+L + ++ + L+YG G+FEG++AY+ DG +FR ++ RL A+ M
Sbjct: 35 GKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMD 94
Query: 89 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-P 147
P + ++A ++ + + S Y+RP++ LG++ + A+ P
Sbjct: 95 VPFDQETLEAAQRDVVRENK------LESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWP 148
Query: 148 VGNYF-KEGLAPLNLYVEDEFHRATPG-GAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 205
G Y +EGLA F R KA Y + A A G+ + L L
Sbjct: 149 WGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLL 208
Query: 206 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPV 265
D + E S N F++ + TP + + L GITR ++I +A + G +V E+ I
Sbjct: 209 DV--DGYVSEGSGENFFLVNRGKLYTPDLA-SCLDGITRDTVITLAKEAGIEVIEKRITR 265
Query: 266 DELLEADEVFCTGTAVVVAPVGSITYR 292
DE+ ADE F TGTA V P+ + R
Sbjct: 266 DEVYTADEAFFTGTAAEVTPIRELDNR 292
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 130/298 (43%), Gaps = 25/298 (8%)
Query: 43 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQ 101
S L+YG +FEG++AY G +FR ++ R A+ + M P + ++ +A+K+
Sbjct: 26 SHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKE 84
Query: 102 TALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPE--YTFLVFASPVGNYF-KEGLAP 158
N G S YIRPL LG+ P P +V A G Y +E +
Sbjct: 85 VVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRK 137
Query: 159 LNLYVEDEFHR----ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 214
+ + R PG A K NY A A G + L LD + +
Sbjct: 138 GARLITSSWARFPANVMPGKA---KVGGNYVNSALAKMEAVAAGADEALLLD--EEGYVA 192
Query: 215 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 274
E S N+F ++ +I S L GITR S+I IA D G++V+ D+L ADEV
Sbjct: 193 EGSGENLFFVRDGVIYALEHS-VNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEV 251
Query: 275 FCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
F TGTA V PV I +R K A V+ L + TG + +GW +N
Sbjct: 252 FMTGTAAEVTPVSMIDWRPIG---KGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 215 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 274
E S N+F++K + TP+ IL GITR+++I++A VEER + V EL EADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 275 FCTGTAVVVAPV 286
F T T+ V PV
Sbjct: 236 FLTHTSAGVVPV 247
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 163
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 164 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 222
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 283 VAPVGSI 289
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 163
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 164 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 222
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 283 VAPVGSI 289
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 163
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 164 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 222
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 283 VAPVGSI 289
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 163
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 164 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 222
+ F +K+++ VL A A +G + +L+ ++ K SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNTVTKG----SSSNVF 184
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 283 VAPVGSI 289
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 163
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 164 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 222
+ F +K+++ VL A A +G + +L+ ++ + SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTSGSSSNVF 184
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 283 VAPVGSI 289
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 163
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 164 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 222
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+K I+ T + I GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 283 VAPVGSI 289
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 195 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 254
K+ GF DV++ D + E ++ + KG+ I TP+ G IL G T+ ++ A++
Sbjct: 201 KSNGFDDVIFTDG---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 255 GFQVEERAIPVDELLEADEVF 275
G++ +E+ + +D+L AD V+
Sbjct: 258 GWRCKEKDLSIDDLFGADSVW 278
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGI 242
NY + A +A G D L+ ++ N ++ E + N+F+++ NI+ TP IL GI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNTEN--HVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 243 TRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 279
TR +I V+E ++ + +AD VF T +
Sbjct: 202 TRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 38 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 97
ELS L YG GLFE + A R +L+ +++ RL+ G R+ +P +
Sbjct: 33 ELSVRDRGLAYGDGLFETL-AVRAGTPRLL----ERHLARLEEGCRRLAIPLDTA----- 82
Query: 98 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPAPEYT--FLVFASPVGNY--- 151
A++Q LA + G G + L+V G L G AP E + ++ SP Y
Sbjct: 83 ALRQELLA---FCAALGDG---VAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPER 136
Query: 152 -FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK 210
+++G+ L+ P AG +K ++ VL A + + G ++ L LD V++
Sbjct: 137 HWQQGV---RLFACRTRLAEQPLLAG-LKHLNRLEQVL-ARAEWSDAGHAEGLMLD-VHE 190
Query: 211 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLE 270
+ +E V S + +L G +++ P +AG+ R ++E A G + R + + EL
Sbjct: 191 RVVEGVFSNLLLVLDGTLVA-PDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELAT 249
Query: 271 ADEVFCTGTAVVVAPVGSI 289
ADEVF + + PV ++
Sbjct: 250 ADEVFLCNSQFGIWPVRAL 268
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 176 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 235
G+K ++ VL S + + L LDS + + E + N+F KGN++ TP
Sbjct: 137 AGIKHLNRLEQVLIR-SHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLD 193
Query: 236 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 286
+ GI R+ I + + +Q+ E ++E L+ADE+ + V PV
Sbjct: 194 QAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 175 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII----- 229
A VK IS YA + N+ F+D L + + N + E SC F+ +++
Sbjct: 15 APAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPF 74
Query: 230 ---STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
S T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 125
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 179 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII--------S 230
K IS YA + N+ F+D L + + N + E SC F+ +++ S
Sbjct: 1 KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITS 60
Query: 231 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 61 MKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 107
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 218 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 278 GTAVVVAPVGSITYRGKRIEFKTGAQSV 305
T VVV PV T R K + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREKVVSFLEKLQEV 197
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 201 DVLYLDSVNKKNLEEVSSCNI---FILKGNIISTPATSGTILAGITRKSIIEIASDC 254
D+LY+ V K+ L+ CN+ F+L+ + + + +L + R + EIA+D
Sbjct: 223 DILYMTRVQKERLDPSEYCNVKAQFVLRASDLHNAKANMKVLHPLPR--VDEIATDV 277
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 266 DELLEADEVFCTGTAVVVAPVGSIT 290
+++LE D + C GT++ VAPV I
Sbjct: 389 EDILECDLLICIGTSLKVAPVSEIV 413
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 128 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 178
PI G+ P Y L P+G + + P VEDE + GG GV
Sbjct: 1 APIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGV 51
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 266 DELLEADEVFCTGTAVVVAPVGSIT 290
+++LE D + C GT++ VAPV I
Sbjct: 251 EDILECDLLICIGTSLKVAPVSEIV 275
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|F Chain F, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|G Chain G, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 218 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 278 GTAVVVAPVGSITYRGKRIEFKTGAQSV 305
T VVV PV T R + + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREEVVSFLEKLQEV 197
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O64|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 218 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 124 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 170
Query: 278 GTAVVVAPVGSITYRGKRIEFKTGAQSV 305
T VVV PV T R + + F Q V
Sbjct: 171 RTHVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1DNV|A Chain A, Parvovirus (Densovirus) From Galleria Mellonella
Length = 437
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 221 IFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 280
IF L N+I P +GT ++ + + C ++ + +P+ ++ G+
Sbjct: 47 IFGLANNVIG-PTGTGT-------TAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSR 98
Query: 281 VVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVE 330
VV V + +R RI F+T + + + + +QT + + GW +
Sbjct: 99 VVECNV-KVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGIN 147
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O63|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 218 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 124 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 170
Query: 278 GTAVVVAPVGSITYRGKRIEFKTGAQSV 305
T VVV PV T R + + F Q V
Sbjct: 171 RTHVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 234 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD--EVFCTGTAVVVAP 285
T+ +LA R I E A + G + + I VDE ++ + VF TG A +AP
Sbjct: 261 TNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAP 314
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 219 CNIFILKGNIISTPATSGTILAGI 242
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 219 CNIFILKGNIISTPATSGTILAGI 242
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 219 CNIFILKGNIISTPATSGTILAGI 242
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|B Chain B, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|C Chain C, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|D Chain D, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|E Chain E, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|F Chain F, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|G Chain G, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|H Chain H, Crystal Structure Of Artocarpin-Mannotriose Complex
Length = 149
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 219 CNIFILKGNIISTPATSGTILAGI 242
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 238 ILAGITRKSIIEIASDCGFQVEERAIP---VDELLEADEVFCTG 278
+L +R +++ AS GF + E P V ELLEAD++ C G
Sbjct: 56 VLITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEADQIDCLG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,446,147
Number of Sequences: 62578
Number of extensions: 459599
Number of successful extensions: 989
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 47
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)