Query 020003
Match_columns 332
No_of_seqs 115 out of 1226
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 1.6E-73 3.5E-78 550.0 40.0 332 1-332 70-403 (403)
2 PLN02259 branched-chain-amino- 100.0 5.2E-73 1.1E-77 543.9 39.0 332 1-332 56-388 (388)
3 PLN02883 Branched-chain amino 100.0 3.4E-71 7.3E-76 530.3 39.0 331 1-331 52-383 (384)
4 PLN03117 Branched-chain-amino- 100.0 6E-71 1.3E-75 526.9 40.1 331 1-332 20-351 (355)
5 PRK13357 branched-chain amino 100.0 5.5E-66 1.2E-70 493.5 39.1 331 2-332 18-356 (356)
6 KOG0975 Branched chain aminotr 100.0 2.5E-65 5.3E-70 471.5 27.5 328 1-330 45-379 (379)
7 TIGR01123 ilvE_II branched-cha 100.0 2.6E-61 5.6E-66 454.8 35.8 304 26-331 1-313 (313)
8 TIGR01122 ilvE_I branched-chai 100.0 7.5E-60 1.6E-64 442.1 34.3 291 26-331 1-298 (298)
9 PRK06606 branched-chain amino 100.0 9.3E-60 2E-64 442.9 34.5 298 19-331 3-306 (306)
10 PRK12479 branched-chain amino 100.0 6.4E-57 1.4E-61 422.3 33.4 277 25-321 6-288 (299)
11 cd01557 BCAT_beta_family BCAT_ 100.0 1E-55 2.2E-60 410.4 33.7 277 38-319 1-279 (279)
12 PRK07544 branched-chain amino 100.0 5.6E-56 1.2E-60 414.7 32.2 276 24-321 10-290 (292)
13 PRK08320 branched-chain amino 100.0 9.8E-56 2.1E-60 412.4 33.4 275 25-319 5-285 (288)
14 PRK07650 4-amino-4-deoxychoris 100.0 1.3E-55 2.9E-60 410.6 32.8 272 25-319 2-277 (283)
15 PRK13356 aminotransferase; Pro 100.0 2E-55 4.4E-60 409.8 33.5 271 25-318 9-283 (286)
16 PRK12400 D-amino acid aminotra 100.0 1.1E-54 2.5E-59 405.5 33.2 273 24-319 6-284 (290)
17 PLN02845 Branched-chain-amino- 100.0 1.4E-54 3.1E-59 411.5 32.8 273 25-320 43-325 (336)
18 PRK06680 D-amino acid aminotra 100.0 3E-54 6.5E-59 401.9 33.3 270 25-319 5-283 (286)
19 PRK07849 4-amino-4-deoxychoris 100.0 3.9E-54 8.5E-59 402.0 32.9 268 24-316 8-287 (292)
20 cd01558 D-AAT_like D-Alanine a 100.0 3E-54 6.4E-59 398.9 31.7 265 26-313 1-270 (270)
21 TIGR01121 D_amino_aminoT D-ami 100.0 6.6E-54 1.4E-58 397.7 33.1 267 25-316 2-274 (276)
22 PRK06092 4-amino-4-deoxychoris 100.0 4.2E-53 9.1E-58 390.8 31.9 263 25-315 2-267 (268)
23 TIGR03461 pabC_Proteo aminodeo 100.0 1.4E-52 3E-57 386.0 30.9 257 26-310 1-260 (261)
24 COG0115 IlvE Branched-chain am 100.0 1.4E-51 3.1E-56 383.4 33.0 276 25-320 4-283 (284)
25 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 1.7E-51 3.7E-56 377.3 31.4 251 43-313 1-256 (256)
26 cd01559 ADCL_like ADCL_like: 4 100.0 6.7E-51 1.5E-55 372.3 29.4 247 43-313 1-249 (249)
27 PRK09266 hypothetical protein; 100.0 2.6E-50 5.7E-55 371.8 29.2 256 25-316 5-261 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 2.3E-41 5.1E-46 305.3 24.0 226 69-313 1-231 (231)
29 PRK07546 hypothetical protein; 100.0 1.3E-40 2.8E-45 296.7 25.0 206 49-289 3-209 (209)
30 PRK07101 hypothetical protein; 100.0 1.4E-31 3.1E-36 234.2 20.8 183 50-283 3-187 (187)
31 PF04322 DUF473: Protein of un 42.2 60 0.0013 26.2 4.9 61 238-298 5-78 (119)
32 cd05569 PTS_IIB_fructose PTS_I 37.2 67 0.0015 24.5 4.4 56 237-296 10-75 (96)
33 PF15507 DUF4649: Domain of un 36.8 52 0.0011 24.0 3.4 52 260-311 12-65 (72)
34 PF03698 UPF0180: Uncharacteri 36.4 99 0.0022 23.1 5.0 66 246-313 12-79 (80)
35 TIGR00829 FRU PTS system, fruc 33.5 84 0.0018 23.6 4.3 44 237-280 9-62 (85)
36 PF14475 Mso1_Sec1_bdg: Sec1-b 32.0 46 0.001 21.5 2.2 23 302-328 19-41 (41)
37 PRK10474 putative PTS system f 31.5 76 0.0016 23.9 3.8 36 245-280 4-48 (88)
38 PRK03972 ribosomal biogenesis 28.2 3.9E+02 0.0085 23.8 8.2 91 191-287 42-167 (208)
39 PF08222 HTH_CodY: CodY helix- 28.1 72 0.0016 22.3 2.7 23 240-263 14-39 (61)
40 cd03079 GST_N_Metaxin2 GST_N f 28.1 1.3E+02 0.0027 22.0 4.3 57 229-296 3-61 (74)
41 COG1445 FrwB Phosphotransferas 26.3 1.4E+02 0.003 24.2 4.5 38 243-280 19-66 (122)
42 COG1935 Uncharacterized conser 25.5 75 0.0016 25.4 2.8 44 238-281 5-52 (122)
43 COG2257 Uncharacterized homolo 23.7 57 0.0012 24.9 1.8 32 240-271 30-61 (92)
44 KOG3442 Uncharacterized conser 20.9 2.1E+02 0.0045 23.3 4.5 41 77-121 57-98 (132)
45 PRK10427 putative PTS system f 20.2 1.9E+02 0.004 23.1 4.2 45 236-280 13-67 (114)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.6e-73 Score=549.96 Aligned_cols=332 Identities=73% Similarity=1.261 Sum_probs=309.2
Q ss_pred CCCCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHH
Q 020003 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQ 79 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~ 79 (332)
+||++||||.+|||||.+++|+.+ .|.||+++|.+++.+++.|++|+||||+||||++|++.+|++++|++++|++||.
T Consensus 70 ~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~ 149 (403)
T PLN02782 70 IDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMR 149 (403)
T ss_pred CCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHH
Confidence 599999999999999999999775 8999999999999999999999999999999999988889999999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcce
Q 020003 80 TGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL 159 (332)
Q Consensus 80 ~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~ 159 (332)
+||++|+|+.|+.+++.+++.++++.+..|+|+...+.+|||++++|+++.+|+.++.++.+++++.|.++++..|.+++
T Consensus 150 ~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g~~~v 229 (403)
T PLN02782 150 NGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPI 229 (403)
T ss_pred HHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccCCccE
Confidence 99999999988899999999999999999999876678999998888776788887777888899999887777777788
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcc
Q 020003 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL 239 (332)
++.+..++.|..|..++++|+.+||+.+++++++|+++|+||+|++|.+++|+|+|++++|||++++++|+||+++.+||
T Consensus 230 ~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL 309 (403)
T PLN02782 230 NLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTIL 309 (403)
T ss_pred EEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcC
Confidence 88876668899888899999988999999999999999999999999522699999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhc
Q 020003 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQT 318 (332)
Q Consensus 240 ~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~ 318 (332)
|||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|.++|+.+.+++| .||++++|++.|.++++
T Consensus 310 pGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~~iq~ 389 (403)
T PLN02782 310 PGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQM 389 (403)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999888998877666 79999999999999999
Q ss_pred cCCCCCCCCeeeCC
Q 020003 319 GLIKDNKGWTVEIN 332 (332)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (332)
|+.+|..+|+++|+
T Consensus 390 G~~~~~~~W~~~v~ 403 (403)
T PLN02782 390 GLIEDNMNWTVELS 403 (403)
T ss_pred CCCCCCCCCeEECC
Confidence 99999999999986
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=5.2e-73 Score=543.95 Aligned_cols=332 Identities=76% Similarity=1.272 Sum_probs=307.0
Q ss_pred CCCCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHH
Q 020003 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQ 79 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~ 79 (332)
+||++||||.+|||||.+++|+.+ .|.||+++|.+++.+++.|++|+||||+||||++|.+.+|++++|++++|++||.
T Consensus 56 ~~~~~l~f~~~~td~m~~~~~~~~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~ 135 (388)
T PLN02259 56 LDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMK 135 (388)
T ss_pred CCccccCCCCcccCceEEEEECCCCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHH
Confidence 589999999999999999999775 9999999999999999999999999999999999977789988999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcce
Q 020003 80 TGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL 159 (332)
Q Consensus 80 ~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~ 159 (332)
+||++|+|+.|+.+++.+++.++++.+..|+|+.+.+.+|||++++|.+..+|+.++.++.+++++.|.++++..|.+++
T Consensus 136 ~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i 215 (388)
T PLN02259 136 LGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAAL 215 (388)
T ss_pred HhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceE
Confidence 99999999988899999999999999999999876678999998888776678887777888999999887776677777
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcc
Q 020003 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL 239 (332)
++.+.+++.|..|..++++|+.+||+.+++++++|+++|+||+|++|..++|+|+|++++|+|++++++|+||+++.+||
T Consensus 216 ~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL 295 (388)
T PLN02259 216 NLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTIL 295 (388)
T ss_pred EEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcC
Confidence 78776678899888889999977999999999999999999999999633699999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhcc
Q 020003 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 240 ~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~ 319 (332)
|||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|.||.+|++.|+.+.++.+.||++++|++.|.++++|
T Consensus 296 ~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~~g~~t~~L~~~l~~iq~G 375 (388)
T PLN02259 296 EGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSVLVGIQTG 375 (388)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999876677656655789999999999999999
Q ss_pred CCCCCCCCeeeCC
Q 020003 320 LIKDNKGWTVEIN 332 (332)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (332)
+++|..+|+++||
T Consensus 376 ~~~~~~~W~~~~~ 388 (388)
T PLN02259 376 LIEDNKGWVTDIN 388 (388)
T ss_pred CCCCCCCCeEECC
Confidence 9999999999997
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=3.4e-71 Score=530.27 Aligned_cols=331 Identities=67% Similarity=1.122 Sum_probs=304.5
Q ss_pred CCCCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHH
Q 020003 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQ 79 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~ 79 (332)
+||++||||.+|||||.+++|+.. .|.+++++|..++.+++.+++|+||||+||||++|++.+|++++|++++|++||.
T Consensus 52 ~~~~~l~fg~~~td~m~~~~~~~~~~w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~ 131 (384)
T PLN02883 52 VDWDKLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMK 131 (384)
T ss_pred CCchhcCcCCeecCceEEEEEcCCCcccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHH
Confidence 599999999999999999998875 9999999999999999999999999999999999988789999999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcce
Q 020003 80 TGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL 159 (332)
Q Consensus 80 ~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~ 159 (332)
+||++|+||.|+.+++.+++.++++.+..|||+.+.+.+|||+++.++++.+|+.++.++.++|++.|.++++..|.+++
T Consensus 132 ~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v 211 (384)
T PLN02883 132 IGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAAL 211 (384)
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceE
Confidence 99999999988899999999999999999999876678999999988777788887777889999999988777777788
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcc
Q 020003 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL 239 (332)
++.+...++|..|..++++|+.+||+.+++++++|+++|+||+|++|.+++|+|+|++++|||++++++|+||+++.+||
T Consensus 212 ~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iL 291 (384)
T PLN02883 212 NLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTIL 291 (384)
T ss_pred EEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcC
Confidence 88776666888888899999988999999999999999999999999732479999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhcc
Q 020003 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 240 ~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~ 319 (332)
|||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.++.+.+..+.||++++|++.|.++++|
T Consensus 292 pGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~~G~vt~~L~~~l~~iq~G 371 (384)
T PLN02883 292 GGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIVTQQLRSILLGIQTG 371 (384)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999766554432323689999999999999999
Q ss_pred CCCCCCCCeeeC
Q 020003 320 LIKDNKGWTVEI 331 (332)
Q Consensus 320 ~~~~~~~~~~~~ 331 (332)
+++|..+|+++|
T Consensus 372 ~~~d~~~W~~~~ 383 (384)
T PLN02883 372 SIQDTKDWVLQI 383 (384)
T ss_pred CCCCCCCCeEeC
Confidence 999999999987
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=6e-71 Score=526.89 Aligned_cols=331 Identities=62% Similarity=1.128 Sum_probs=296.0
Q ss_pred CCCCCCCCccccCCceEEEEeccc-eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHH
Q 020003 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQ 79 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~ 79 (332)
+||+++|||.+|+|||++++|+.. +|+||++++.+++.|++.|+||+||||+|||+|+|+.++|++++|++++|++||+
T Consensus 20 ~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~ 99 (355)
T PLN03117 20 VKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQ 99 (355)
T ss_pred cCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHH
Confidence 589999999999999999999886 8999999999999999999999999999999999976688888999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcce
Q 020003 80 TGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL 159 (332)
Q Consensus 80 ~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~ 159 (332)
+||++|+|+.|+.++|++.+.++++++..++|+...+.+|+|+.++|.++..|+.+.+++.+++++.|.+.++. ..+++
T Consensus 100 ~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~-~~~gi 178 (355)
T PLN03117 100 TGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHK-ASSGL 178 (355)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEecccccc-CCCCE
Confidence 99999999988899999999999999987776555567899988876655567766556677888888765432 23567
Q ss_pred EEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcc
Q 020003 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239 (332)
Q Consensus 160 ~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL 239 (332)
++.+.+.++|..|..++++|+.+||+.+++++++|+++|+||+|++|.+++|+|+|++.+|||++++++|+||+++.++|
T Consensus 179 ~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~~~iL 258 (355)
T PLN03117 179 NLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTIL 258 (355)
T ss_pred EEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCCC
Confidence 77765556777777899999965899999999999999999999999732369999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhcc
Q 020003 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 240 ~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~ 319 (332)
+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|.||.+|++.++.+.|+++.+|+|++|+++|.++++|
T Consensus 259 ~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 338 (355)
T PLN03117 259 PGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGEEALSTKLHLILTNIQMG 338 (355)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999877777777766789999999999999999
Q ss_pred CCCCCCCCeeeCC
Q 020003 320 LIKDNKGWTVEIN 332 (332)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (332)
+.+++.+|+++|+
T Consensus 339 ~~~~~~~W~~~v~ 351 (355)
T PLN03117 339 VVEDKKGWMVEID 351 (355)
T ss_pred CCCCCCCCEEEcc
Confidence 9999999999984
No 5
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=5.5e-66 Score=493.46 Aligned_cols=331 Identities=46% Similarity=0.835 Sum_probs=288.7
Q ss_pred CCCCCCCccccCCceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHH
Q 020003 2 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTG 81 (332)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~S 81 (332)
||+++|||...++||.+.+|..+.|+||+++|.+++.|++.||||+||||+|||+|++++.+|++++|+|++|++||.+|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~S 97 (356)
T PRK13357 18 DWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRS 97 (356)
T ss_pred CccccCCCccccceeEEEEecCCcccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHH
Confidence 89999999999999999999888899999999999999999999999999999999997667888899999999999999
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCC-CCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceE
Q 020003 82 AERMCMPSPSIDQFIDAVKQTALANKRWV-PPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLN 160 (332)
Q Consensus 82 a~~l~i~~p~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~ 160 (332)
|+.|+|+.++.++|++.+.+++++++.++ +....+.+|+|+.++++...+|+.+...+.+++++.|+++++..+.++++
T Consensus 98 a~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~v~ 177 (356)
T PRK13357 98 ADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVS 177 (356)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhcccCCCceE
Confidence 99999986689999999999999887533 11123578999888755555677655567788888887655444456777
Q ss_pred EEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCccc
Q 020003 161 LYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILA 240 (332)
Q Consensus 161 l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~ 240 (332)
+.+...+.|..|..++++|+..||+.+++|+++|+++|+||+|++|.+++|+|+|++++|||++++++++|||++.++|+
T Consensus 178 l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl~~giL~ 257 (356)
T PRK13357 178 IWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILP 257 (356)
T ss_pred EEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCCCCCCCc
Confidence 76654677888887899999448999999999999999999999995226999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHCCCcEEEEecCHhh------HhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHH
Q 020003 241 GITRKSIIEIASDCGFQVEERAIPVDE------LLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTL 313 (332)
Q Consensus 241 GitR~~vl~~~~~~g~~v~e~~i~~~d------L~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~ 313 (332)
||||+.|+++|+++|++|+|+.++++| |.+|||+|+|||+.||+||++|+..++...++.| +||+++.|+++|
T Consensus 258 GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~~g~~g~~t~~L~~~~ 337 (356)
T PRK13357 258 GITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGEVGPVTQKLYDEL 337 (356)
T ss_pred chHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcCCCCCChHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999999643333334656 799999999999
Q ss_pred HhhhccCCCCCCCCeeeCC
Q 020003 314 VGIQTGLIKDNKGWTVEIN 332 (332)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~ 332 (332)
.+.++|+.+++.+|+++||
T Consensus 338 ~~~~~~~~~~~~~w~~~~~ 356 (356)
T PRK13357 338 TGIQFGDVEDPHGWIVKVD 356 (356)
T ss_pred HHHhcCCCCCCCCCcEeCc
Confidence 9999998889999999986
No 6
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-65 Score=471.53 Aligned_cols=328 Identities=56% Similarity=0.962 Sum_probs=312.4
Q ss_pred CCCCCCCCccccCCceEEEEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHH
Q 020003 1 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQT 80 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~ 80 (332)
.|||+|+||++|||||++++|+.+.|..|++.|..++.+++....||||+++||.+++|++.+|++++|++++|+.|+.+
T Consensus 45 ~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~ 124 (379)
T KOG0975|consen 45 IDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLR 124 (379)
T ss_pred CCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHHh
Confidence 48999999999999999999997699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceE
Q 020003 81 GAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLN 160 (332)
Q Consensus 81 Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~ 160 (332)
||.++.||.|+.+++.++|++++.+++.|||+..++.+|||+++.|++..+|.++.+++.+++++.|.++|++.|.+++.
T Consensus 125 sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~ 204 (379)
T KOG0975|consen 125 SAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVN 204 (379)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhccccccceE
Confidence 99999999999999999999999999999999999999999999999988999998999999999999999999999999
Q ss_pred EEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCE--EEcCCCCCCc
Q 020003 161 LYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI--ISTPATSGTI 238 (332)
Q Consensus 161 l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~--l~TP~~~~gi 238 (332)
|.+.+.++|..|....+.|+.+||+++++++.||+.+||+++|+++.+ +++|+|.++.|||+++++. ++|||+++.|
T Consensus 205 L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItEv~tmNiF~v~~n~~elvTPp~dg~I 283 (379)
T KOG0975|consen 205 LLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITEVGTMNIFMVKKNEDELVTPPLDGTI 283 (379)
T ss_pred EEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceeeccceeEEEEEcCceeEecCCCCCcc
Confidence 999989999999999999999999999999999999999999999984 3599999999999999998 9999999999
Q ss_pred ccchHHHHHHHHHHHCC-CcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCC---eEEeeCCC-ccHHHHHHHHHH
Q 020003 239 LAGITRKSIIEIASDCG-FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG---KRIEFKTG-AQSVSRELYSTL 313 (332)
Q Consensus 239 L~GitR~~vl~~~~~~g-~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~---~~i~~~~g-~g~~~~~L~~~~ 313 (332)
||||||+.|+|+|+++| ++|+||.++++|+.+|+|+|.|+|...+-||..|.+.+ +.-.+++| .||++++|++.+
T Consensus 284 LpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~l~~~l 363 (379)
T KOG0975|consen 284 LPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLAKKLLSTL 363 (379)
T ss_pred cCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCccHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999887 33245777 899999999999
Q ss_pred HhhhccCCCCCCCCeee
Q 020003 314 VGIQTGLIKDNKGWTVE 330 (332)
Q Consensus 314 ~~~~~~~~~~~~~~~~~ 330 (332)
.++|+|+ +++.+|+++
T Consensus 364 ~~iq~g~-~~~~~w~~~ 379 (379)
T KOG0975|consen 364 TDIQYGR-EPKKGWTVP 379 (379)
T ss_pred HHhhcCC-cCCCCcccC
Confidence 9999999 789999874
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=2.6e-61 Score=454.81 Aligned_cols=304 Identities=50% Similarity=0.887 Sum_probs=263.6
Q ss_pred eeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 020003 26 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105 (332)
Q Consensus 26 ~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~~ 105 (332)
|+||+|+|.+++.++++||||+||||+|||+|++...+|++++|+|++|++||.+||++|+|+.|+.+++++.+.+++++
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999985557888889999999999999999999877899999999999998
Q ss_pred cCCCCCCC-CCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccCh
Q 020003 106 NKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 184 (332)
Q Consensus 106 ~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y 184 (332)
+...++.. ..+.+|+|+.+++.++.+|+++.+.+.++++..|++.++..+.+++++.+...+.|..|..++++||..||
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~ny 160 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNY 160 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceecccc
Confidence 87533211 23467899888765555677665567778888887655545555566555456677777778999994489
Q ss_pred HHHHHHHHHHHHCCCCeEEEEccCCCCe--EEEeCceeEEEEEC-CEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEE
Q 020003 185 APVLKAISRAKNRGFSDVLYLDSVNKKN--LEEVSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASDCGFQVEER 261 (332)
Q Consensus 185 ~~~~~a~~~a~~~g~de~llln~~~~G~--v~E~s~sNifiv~~-~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~ 261 (332)
+.+++++++|+++|+||+|++|+ +|+ |+|++++|||++++ |+|+|||++.++|+||||+.|+++|+++|++|+|+
T Consensus 161 l~~vla~~eA~~~g~deal~ld~--~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~ 238 (313)
T TIGR01123 161 AASLLAQAKAAEQGCDQVVYLDP--VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEER 238 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeC--CCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999998 665 99999999999985 79999999999999999999999999999999999
Q ss_pred ecCHhhHhcc----ceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCeeeC
Q 020003 262 AIPVDELLEA----DEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 331 (332)
Q Consensus 262 ~i~~~dL~~a----devfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
.++++||.+| ||+|+|||+.||+||++|++|++.+.|+.| +||++++|+++|.+.++|+-+++.+|+++|
T Consensus 239 ~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 313 (313)
T TIGR01123 239 RIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313 (313)
T ss_pred ecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCeeeC
Confidence 9999999999 999999999999999999667877555666 799999999999999999888999999987
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=7.5e-60 Score=442.12 Aligned_cols=291 Identities=32% Similarity=0.543 Sum_probs=252.5
Q ss_pred eeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHH
Q 020003 26 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104 (332)
Q Consensus 26 ~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~~ 104 (332)
|+||++++.+++.+++.||||+||||+|||+|+++|.+|. ++|+|++|++||.+||+.|+|+.| +.+++++.+.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGP-AIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcc-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999543322 377899999999999999999987 79999999999999
Q ss_pred HcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccC--CCcceEEEeeccccccCCCCC-CCcc
Q 020003 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE--GLAPLNLYVEDEFHRATPGGA-GGVK 179 (332)
Q Consensus 105 ~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~--g~~~~~l~~~~~~~r~~p~~l-~~~K 179 (332)
+++. ..++||++++++.+.+|+.+. .++.+++++.|++.++.. -.+++++.+. ++.|..+..+ +++|
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K 151 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAK 151 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccch
Confidence 8763 467899887654445677652 356777888877543221 1246777765 4677766554 8999
Q ss_pred cccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEE
Q 020003 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVE 259 (332)
Q Consensus 180 t~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~ 259 (332)
+.|||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+++.++|+||||+.|+++|+++|++|+
T Consensus 152 ~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~ 229 (298)
T TIGR01122 152 AGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVV 229 (298)
T ss_pred hhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEE
Confidence 9856999999999999999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred EEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCeeeC
Q 020003 260 ERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 331 (332)
Q Consensus 260 e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
|+.++++||.+|||+|+|||++||+||.+| |++.+ ++| +||++++|+++|.+.++++.+++.+|+..|
T Consensus 230 e~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 230 EQPISREELYTADEAFFTGTAAEITPIREV--DGRKI--GNGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred EEeCCHHHHhhCCEEEEcCCcceEEEEEEE--CCEEC--CCCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence 999999999999999999999999999999 67766 666 799999999999999999999999998764
No 9
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=9.3e-60 Score=442.93 Aligned_cols=298 Identities=32% Similarity=0.523 Sum_probs=256.8
Q ss_pred EEeccceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHH
Q 020003 19 MKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFID 97 (332)
Q Consensus 19 ~~~~~~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~ 97 (332)
+|...-+|+||++++.+++.+++.||||+||||+|||+|+++|++|+ ++|+|++|++||.+||+.|+|+.| +.+++++
T Consensus 3 ~~~~~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~ 81 (306)
T PRK06606 3 ADRAGYIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELME 81 (306)
T ss_pred CccCCcEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 44444589999999999999999999999999999999999765554 377899999999999999999987 7899999
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCC-CCeEEEEEEeecCcccc-CC-CcceEEEeeccccccCCCC
Q 020003 98 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFK-EG-LAPLNLYVEDEFHRATPGG 174 (332)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~-~g-~~~~~l~~~~~~~r~~p~~ 174 (332)
.+.+++++++. ..++||+.+++..+.+|+.+. ..+.+++.+.|++.++. .. .+++++.+. ++.|..+..
T Consensus 82 ~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~ 153 (306)
T PRK06606 82 AQREVVRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNS 153 (306)
T ss_pred HHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCC
Confidence 99999998763 467899888654445676643 34566777777654322 11 246777664 466766654
Q ss_pred -CCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHH
Q 020003 175 -AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 253 (332)
Q Consensus 175 -l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~ 253 (332)
++++|+..||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+++.|+||||||+.|+++|++
T Consensus 154 ~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~ 231 (306)
T PRK06606 154 IPTRAKASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKD 231 (306)
T ss_pred cCcchhhhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHH
Confidence 578997559999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCCCCCCCCeeeC
Q 020003 254 CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 331 (332)
Q Consensus 254 ~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
+|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++| +||++++|+++|.+.+.++.+|+.+|++++
T Consensus 232 ~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~i--d~~~~--~~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T PRK06606 232 LGIEVIERRITRDELYIADEVFFTGTAAEVTPIREV--DGRQI--GNGKRGPITEKLQSAYFDIVRGRTEKYAHWLTPV 306 (306)
T ss_pred cCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEE--CcEEC--CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCcccC
Confidence 999999999999999999999999999999999999 67776 666 799999999999999999899999999875
No 10
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=6.4e-57 Score=422.30 Aligned_cols=277 Identities=27% Similarity=0.399 Sum_probs=239.6
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||++++.+++.++++||||+||||+|||++++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 80 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GGN--VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTL 80 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998 676 77899999999999999999887 7999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccCC-CcceEEEeeccccccCCCCC-CCcc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGA-GGVK 179 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~~l-~~~K 179 (332)
+.++. ...+||+.++++.+.+|+.+. .++.+++.+.|++..+... .+++++.+. .+.|..|+.+ +.+|
T Consensus 81 ~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K 152 (299)
T PRK12479 81 QKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIK 152 (299)
T ss_pred HHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccch
Confidence 88763 457899877654455677653 4567788888765322110 134556554 4567666555 6999
Q ss_pred cccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEE
Q 020003 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVE 259 (332)
Q Consensus 180 t~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~ 259 (332)
+. ||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+++.|+||||||+.|+++|+++|++|+
T Consensus 153 ~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~ 229 (299)
T PRK12479 153 SM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCE 229 (299)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEE
Confidence 96 9999999999999999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred EEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccCC
Q 020003 260 ERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLI 321 (332)
Q Consensus 260 e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~~ 321 (332)
|+.++++||.+|||+|+|||++||+||.+| |++.+ +.| +||++++|+++|.+.+++.-
T Consensus 230 e~~i~~~~L~~adevfltnS~~gi~PV~~i--d~~~~--~~~~~g~~~~~l~~~~~~~~~~~~ 288 (299)
T PRK12479 230 ERPFTRHDVYVADEVFLTGTAAELIPVVKV--DSREI--GDGKPGSVTKQLTEEFKKLTRERG 288 (299)
T ss_pred EEeCCHHHHHhCCeeeeecCcccEEEEEEE--CCEEc--CCCCcCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999 67776 666 79999999999988877743
No 11
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=1e-55 Score=410.37 Aligned_cols=277 Identities=50% Similarity=0.825 Sum_probs=235.5
Q ss_pred ccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCce
Q 020003 38 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGS 117 (332)
Q Consensus 38 ~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~ 117 (332)
.++++||||+||||+|||+|+++..||+.++|+|++|++||.+||+.|+|+.++.+++++.+.+++++++.+.|+....+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 37899999999999999999996333433488899999999999999999944899999999999999876655444457
Q ss_pred EEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHC
Q 020003 118 LYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNR 197 (332)
Q Consensus 118 ~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~ 197 (332)
++||+.+++..+.+|+.+...+.++++..|+++++....+++++.+. ++.|..|..+..+|+..||+.+++++++|+++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 89998887554556776545667788888876544323356777665 56777775567899745999999999999999
Q ss_pred CCCeEEEEccCCC-CeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeee
Q 020003 198 GFSDVLYLDSVNK-KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 276 (332)
Q Consensus 198 g~de~llln~~~~-G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl 276 (332)
|+||+|++|+ + |+|+|++++|||++++++|+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+
T Consensus 160 g~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~ 237 (279)
T cd01557 160 GYDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFA 237 (279)
T ss_pred CCCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEE
Confidence 9999999998 7 999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhcc
Q 020003 277 TGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 277 ~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~ 319 (332)
|||++||+||++| +++.+.++++ +||++++|++.|.+.++|
T Consensus 238 ~ns~~gi~pV~~i--~~~~~~~~~~~~gp~~~~l~~~~~~~~~~ 279 (279)
T cd01557 238 TGTAAVVTPVGEI--DYRGKEPGEGEVGPVTKKLYDLLTDIQYG 279 (279)
T ss_pred ecceeEEEEEEEE--ccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999 5776533445 799999999999998876
No 12
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=5.6e-56 Score=414.73 Aligned_cols=276 Identities=28% Similarity=0.453 Sum_probs=234.3
Q ss_pred ceeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHH
Q 020003 24 DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQT 102 (332)
Q Consensus 24 ~~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~ 102 (332)
.+|+||++++.+++.++++||||+||||+|||++++ +|+ +|+|++|++||++||++|+|+.| +.+.+++.+.++
T Consensus 10 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~ 84 (292)
T PRK07544 10 FIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKET 84 (292)
T ss_pred eEEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999999999998 676 77899999999999999999987 789999999999
Q ss_pred HHHcCCCCCCCCCceEEEEEEEeecCCCcccCCC-CCeEEEEEEeecCccc--cCCCcceEEEeeccccccCCCCC-CCc
Q 020003 103 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYF--KEGLAPLNLYVEDEFHRATPGGA-GGV 178 (332)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~--~~g~~~~~l~~~~~~~r~~p~~l-~~~ 178 (332)
++.+.. .+.+||+.++++.+.+|+.+. ..+.+++...|.+.++ ....+++++.+. +++|..|..+ ..+
T Consensus 85 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~ 156 (292)
T PRK07544 85 LAANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAA 156 (292)
T ss_pred HHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhh
Confidence 998863 457899877654445566543 3344556555554322 122356777765 4667666544 456
Q ss_pred ccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcE
Q 020003 179 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQV 258 (332)
Q Consensus 179 Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v 258 (332)
|+.++|+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++|++|+||+++ ++|+||||+.|+++|+++|++|
T Consensus 157 k~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~v 233 (292)
T PRK07544 157 KAAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEV 233 (292)
T ss_pred hhhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCeE
Confidence 87678999999999999999999999998 79999999999999999999999986 5999999999999999999999
Q ss_pred EEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhccCC
Q 020003 259 EERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 321 (332)
Q Consensus 259 ~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~~~ 321 (332)
+|+.++++||.+|||+|+|||++||+||++| +++.+ + +||+++.|+++|.+.++++-
T Consensus 234 ~e~~i~~~eL~~adevfltnS~~gi~PV~~i--~~~~~--~--~g~~~~~l~~~~~~~~~~~~ 290 (292)
T PRK07544 234 VERHIMPEELAGFSECFLTGTAAEVTPVSEI--GEYRF--T--PGAITRDLMDDYEALVRPRA 290 (292)
T ss_pred EEEecCHHHHhhcCceeecCccceEEEEEEE--eeEEe--C--CChHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999 56665 4 68999999999988877653
No 13
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=9.8e-56 Score=412.43 Aligned_cols=275 Identities=31% Similarity=0.467 Sum_probs=234.9
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||++++.+++.++++||||+||||+|||++++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 79 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NGR--VFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETL 79 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CCE--eecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998 676 67789999999999999999887 7899999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccC-CCcceEEEeeccccccCCCCC-CCcc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGA-GGVK 179 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~p~~l-~~~K 179 (332)
++++. .+.+||+.++++.+.+|+.+. +.+.+++...|.++++.. -.+++++... ++.|..++.+ +++|
T Consensus 80 ~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K 151 (288)
T PRK08320 80 RKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVK 151 (288)
T ss_pred HhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccch
Confidence 98763 467889888654455677653 445667777765432210 0134555443 3566655544 7899
Q ss_pred cccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEE
Q 020003 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVE 259 (332)
Q Consensus 180 t~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~ 259 (332)
+. ||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+|||++.|+|+||||+.|+++|+++|++|+
T Consensus 152 ~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~ 228 (288)
T PRK08320 152 SL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVR 228 (288)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEE
Confidence 97 9999999999999999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred EEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhcc
Q 020003 260 ERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 260 e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~ 319 (332)
|+.++++||.+|||+|+|||++||+||++| +++.+ +.+ +|+++.+|+++|.+.+..
T Consensus 229 e~~l~~~dL~~ade~f~~ns~~gv~pV~~i--~~~~~--~~~~~g~~~~~l~~~~~~~~~~ 285 (288)
T PRK08320 229 EELFTLHDLYTADEVFLTGTAAEVIPVVKV--DGRVI--GDGKPGPITKKLLEEFRELTKK 285 (288)
T ss_pred EEECCHHHHHhCCEEEEecChhhEEEEEEE--CCEEC--CCCCcCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 67765 666 799999999999876543
No 14
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.3e-55 Score=410.55 Aligned_cols=272 Identities=24% Similarity=0.332 Sum_probs=233.1
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||++++.+++.++++|+||+||||+|||+|++ +|+ +|+|++|++||++||+.|+|+.| +.+.+++.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998 676 56789999999999999999987 7899999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCcccc-CCCcceEEEeeccccccCCCCCCCccc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHRATPGGAGGVKA 180 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~-~g~~~~~l~~~~~~~r~~p~~l~~~Kt 180 (332)
++++. ..++||+.++++.+..++.+. ..+.++++..|+++... ....++.+ .+.|..++.++++|+
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Kt 145 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNTPEGAFRLKS 145 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecCCCCCcchhH
Confidence 88752 467899877654344555532 45677888888753221 11122222 245566667899999
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEE
Q 020003 181 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEE 260 (332)
Q Consensus 181 ~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e 260 (332)
. ||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++|+|+||+++.|+|+||||+.++++|+++|++|+|
T Consensus 146 ~-~y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e 222 (283)
T PRK07650 146 H-HYLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKE 222 (283)
T ss_pred H-hHHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEE
Confidence 6 9999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred EecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhcc
Q 020003 261 RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 261 ~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~ 319 (332)
+.++++||..|||+|+|||++||+||.+| +++.+ +..+||+++.|+++|.+.+..
T Consensus 223 ~~i~~~dL~~adeifl~ns~~gv~pV~~i--~~~~~--~g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 223 GFYTKEELLSADEVFVTNSIQEIVPLTRI--EERDF--PGKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred EecCHHHHhhCCEeeeecCcccEEEEEEE--CCEEe--CCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 67776 422899999999999877665
No 15
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=2e-55 Score=409.82 Aligned_cols=271 Identities=26% Similarity=0.394 Sum_probs=228.0
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||++++.+.+.++++||||+||||+|||+|++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i 83 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EGV--TPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGL 83 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEe---cCC--CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999 666 67799999999999999999876 7999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCc-ccCCC-CCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCC-CCccc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA-GGVKA 180 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~-g~~~~-~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l-~~~Kt 180 (332)
+++.. ...++||+.++++.+.. +..+. ..+.+.+...+.+.... +++++.++ ++.|..+..+ ..+|+
T Consensus 84 ~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~gv~l~~~-~~~r~~~~~~~~~~K~ 153 (286)
T PRK13356 84 KRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEP---TGFSLTLS-PFRRPTLEMAPTDAKA 153 (286)
T ss_pred HHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCC---CcEEEEEe-eeecCCCCCCCcccee
Confidence 98752 24678998776432222 33332 23334444444332111 45677664 4667655443 67897
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEE
Q 020003 181 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEE 260 (332)
Q Consensus 181 ~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e 260 (332)
.+||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+++.++|+||||+.|+++|+++|++|+|
T Consensus 154 ~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e 231 (286)
T PRK13356 154 GCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVE 231 (286)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEE
Confidence 779999999999999999999999998 799999999999999999999999999999999999999999999999999
Q ss_pred EecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhc
Q 020003 261 RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQT 318 (332)
Q Consensus 261 ~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~ 318 (332)
+.++++||.+|||+|+|||+.||+||++| |++.+ + +||++++|+++|.+.+.
T Consensus 232 ~~i~~~eL~~adevfltns~~gi~PV~~i--d~~~~--~--~g~~~~~l~~~~~~~~~ 283 (286)
T PRK13356 232 TTLTYEDFLEADEVFSTGNYSKVVPVTRF--DDRSL--Q--PGPVTRRARELYWDWAH 283 (286)
T ss_pred EecCHHHHHhcCceEEecChheEEEEEEE--CCEEe--c--CChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 68776 3 68999999999976544
No 16
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.1e-54 Score=405.51 Aligned_cols=273 Identities=19% Similarity=0.248 Sum_probs=223.6
Q ss_pred ceeeCCeEeeCCC--cccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHH
Q 020003 24 DYFEKGRLSRYGK--IELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVK 100 (332)
Q Consensus 24 ~~~~ng~~v~~~~--~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~ 100 (332)
.+|+||+++|.++ +.+++.||||+||||+|||+|++ +|+ +|.|++|++||.+||+.|+|+.| +.+++++.+.
T Consensus 6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~ 80 (290)
T PRK12400 6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFSKAELITLLY 80 (290)
T ss_pred EEEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4899999999884 55999999999999999999998 676 66689999999999999999987 7889999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCC--CCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCc
Q 020003 101 QTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 178 (332)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~ 178 (332)
+++++++. ...++||+.+..+.+..++.+ ...+.++++..+.+.......+++++...+ ..+...+++
T Consensus 81 ~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~ 150 (290)
T PRK12400 81 KLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEP----DTRWLRCDI 150 (290)
T ss_pred HHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECC----CCCccCCCC
Confidence 99998752 134567766653322344443 234556665554322111012345544322 123345789
Q ss_pred ccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcE
Q 020003 179 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQV 258 (332)
Q Consensus 179 Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v 258 (332)
||. ||+.+++++++|++.|+||+|++| +|+|+|++++|||++++++|+|||++.|+|+||||+.|+++|+++|++|
T Consensus 151 Kt~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v 226 (290)
T PRK12400 151 KSL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPV 226 (290)
T ss_pred ccc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcE
Confidence 996 899999999999999999999995 5999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhcc
Q 020003 259 EERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 259 ~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~ 319 (332)
+|+.++++||.+|||+|+|||++||+||++| +++.+ ++| +||+++.|++.|.+.+.-
T Consensus 227 ~E~~i~~~eL~~Adevfltns~~gv~PV~~i--~~~~~--~~~~~g~~t~~l~~~~~~~~~~ 284 (290)
T PRK12400 227 QEELFSVRDVYQADECFFTGTTIEILPMTHL--DGTAI--QDGQVGPITKMLQRSFSQSLLQ 284 (290)
T ss_pred EEEeCCHHHHHhCCeeeEccCcceEEEEEEE--CCEEC--CCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 67766 666 799999999999887653
No 17
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=1.4e-54 Score=411.47 Aligned_cols=273 Identities=22% Similarity=0.274 Sum_probs=230.3
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||+|++.+++.|+++||||+||||+|||+|++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G~--~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DGH--LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998 676 77799999999999999999887 8899999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCC--CCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
++++. .+.+||+.+..+.+.+++.+ ...+.+++...|.+.... ..+++++.+.+ +.|.. +.++++||.
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~gv~l~~~~-~~~~~-~~~~~~Kt~ 187 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQD-RPEGVKVVTSS-VPIKP-PQFATVKSV 187 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccccc-ccCCeEEEEee-eeecC-Cccccchhh
Confidence 98763 45678876653323345543 245666777665432211 12456666543 44533 346789996
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEE-CCEEEcCCCCCCcccchHHHHHHHHHHHC---C--
Q 020003 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEIASDC---G-- 255 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~-~~~l~TP~~~~giL~GitR~~vl~~~~~~---g-- 255 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++ +++|+||+++ ++|+||||+.|+++|+++ |
T Consensus 188 -nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~ 263 (336)
T PLN02845 188 -NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDL 263 (336)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCc
Confidence 9999999999999999999999998 7999999999999874 9999999997 599999999999999986 8
Q ss_pred CcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhccC
Q 020003 256 FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGL 320 (332)
Q Consensus 256 ~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~~ 320 (332)
++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++| +||++++|++.|.+.+++.
T Consensus 264 i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~i--d~~~~--~~g~~gp~t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 264 RGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSW--DGQPI--GDGKVGPITLALHDLLLDDMRSG 325 (336)
T ss_pred eEEEEEecCHHHHhcCCEEEEecCcccEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999 68776 666 8999999999999888774
No 18
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3e-54 Score=401.92 Aligned_cols=270 Identities=22% Similarity=0.329 Sum_probs=227.6
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||++++.+++.+++.||||+||||+|||+|++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~ 79 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DGK--LVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELI 79 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CCE--EechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 676 66789999999999999999987 7899999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEe-ecCCCcccC-C--CCCeEEEEEEeecCcc-ccC-CCcceEEEeeccccccCCCCCCC
Q 020003 104 LANKRWVPPPGKGSLYIRPLLV-GSGPILGLA-P--APEYTFLVFASPVGNY-FKE-GLAPLNLYVEDEFHRATPGGAGG 177 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~-g~~~~~g~~-~--~~~~~~~i~~~p~~~~-~~~-g~~~~~l~~~~~~~r~~p~~l~~ 177 (332)
++++. ..+++|+.++ |.+ ..++. + ...+.+++++.|++.+ ... ..+++++..... .| ...++
T Consensus 80 ~~~~~-------~~~~lr~~vtrG~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~ 147 (286)
T PRK06680 80 RRNRV-------REGLVYLQVTRGVA-RRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPD-NR---WKRCD 147 (286)
T ss_pred HHcCC-------CceEEEEEEEeCCC-CCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecC-CC---CCCCC
Confidence 98763 3445666554 443 33443 2 2456788888887541 111 123555544321 12 23578
Q ss_pred cccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEE-ECCEEEcCCCCCCcccchHHHHHHHHHHHCCC
Q 020003 178 VKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGNIISTPATSGTILAGITRKSIIEIASDCGF 256 (332)
Q Consensus 178 ~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv-~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~ 256 (332)
+|+. ||+.+++++++|+++|+||+|++| +|+|+|++++|||++ ++++|+|||++.++|+||||+.++++|+++|+
T Consensus 148 ~Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~ 223 (286)
T PRK06680 148 IKSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGL 223 (286)
T ss_pred cchh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCC
Confidence 9997 899999999999999999999998 389999999999999 99999999999999999999999999999999
Q ss_pred cEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhhhcc
Q 020003 257 QVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGIQTG 319 (332)
Q Consensus 257 ~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~~~~ 319 (332)
+|+|+.++++||.+|||+|+|||++||+||.+| +++.+ +.+ +||++++|+++|.+.+++
T Consensus 224 ~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~i--d~~~~--~~~~~g~~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 224 EVEERPFTLQEAYAAREAFITAASSFVFPVVQI--DGKQI--GNGKPGPIAKRLREAYEEFARL 283 (286)
T ss_pred eEEEEcCCHHHHhcCcEEEEecCcccEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 67776 656 799999999999876654
No 19
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=3.9e-54 Score=401.97 Aligned_cols=268 Identities=21% Similarity=0.266 Sum_probs=225.7
Q ss_pred ceeeCC-----eEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHH
Q 020003 24 DYFEKG-----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 98 (332)
Q Consensus 24 ~~~~ng-----~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~ 98 (332)
-+|+|| ++++.+++.++++|||++||||+||||+++ +|+ ++.|++|++||.+||+.|+|+.|+.++++++
T Consensus 8 ~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~ 82 (292)
T PRK07849 8 VVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLPEPDLDRWRRA 82 (292)
T ss_pred EEEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 499999 999999999999999999999999999998 676 6678999999999999999999888899999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccc-cCCCcceEEEeecccc------ccC
Q 020003 99 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF-KEGLAPLNLYVEDEFH------RAT 171 (332)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~-~~g~~~~~l~~~~~~~------r~~ 171 (332)
+.++++++.. ...+++||+++..+.+.. ..+.+++.+.|++..+ ....+++++.+.+ .. +..
T Consensus 83 i~~~v~~~~~-----~~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~ 151 (292)
T PRK07849 83 VELAIEEWRA-----PEDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLD-RGYPSDAAERA 151 (292)
T ss_pred HHHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEe-ccccCcccccC
Confidence 9999987631 024568887665322211 1356677888765321 1112456665543 12 223
Q ss_pred CCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHH
Q 020003 172 PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIA 251 (332)
Q Consensus 172 p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~ 251 (332)
|..++++||. ||+.+++++++|+++|+||+|++|+ +|+|+|++++||||+++++|+||+++.|+|+||||+.|+++|
T Consensus 152 p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~ 228 (292)
T PRK07849 152 PWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVA 228 (292)
T ss_pred cccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHH
Confidence 4457889996 9999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhh
Q 020003 252 SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGI 316 (332)
Q Consensus 252 ~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~ 316 (332)
+++|++|+|+.++++||.+|||+|+|||++||+||.+| |++++ + .+|++++|++.|.+.
T Consensus 229 ~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~i--d~~~~--~--~~~~~~~l~~~~~~~ 287 (292)
T PRK07849 229 REKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL--DGRPL--P--RDPLADELTELVDAA 287 (292)
T ss_pred HHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEE--CCEEC--C--CChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 67776 4 579999999998654
No 20
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=3e-54 Score=398.88 Aligned_cols=265 Identities=28% Similarity=0.419 Sum_probs=222.7
Q ss_pred eeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHH
Q 020003 26 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104 (332)
Q Consensus 26 ~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~~ 104 (332)
|+||++++.+++.++++|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.| +.+++++.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NGK--PFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CCE--EecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998 676 77899999999999999999876 78999999999999
Q ss_pred HcCCCCCCCCCceEEEEEEEeecCCCcccCC--CCCeEEEEEEeecCccccC-CCcceEEEeeccccccCCCCCCCcccc
Q 020003 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 105 ~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~~~-g~~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
+++. ..+.+++++ .+|.+ ..++.+ ...+.+++...|+++++.. ..+++++.+.+ ..|. ..+++|+.
T Consensus 76 ~~~~-----~~~~~~~~~-t~g~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~ 144 (270)
T cd01558 76 KNEG-----GEGDVYIQV-TRGVG-PRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL 144 (270)
T ss_pred HcCC-----CCceEEEEE-EeCCC-ccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh
Confidence 8752 234566664 34543 345543 2345677777776532211 12356665543 3332 34689997
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEE
Q 020003 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 261 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~ 261 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+++.|+|+||||+.|+++|+++|++|+|+
T Consensus 145 -ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~ 221 (270)
T cd01558 145 -NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEER 221 (270)
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 8999999999999999999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred ecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHH
Q 020003 262 AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTL 313 (332)
Q Consensus 262 ~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~ 313 (332)
.++++||.+|||+|+|||++||+||++| +++.+ +.+ .+|++++|++.|
T Consensus 222 ~i~~~eL~~ade~fl~ns~~gv~PV~~i--~~~~~--~~~~~~~~~~~l~~~~ 270 (270)
T cd01558 222 PFSLEELYTADEVFLTSTTAEVMPVVEI--DGRPI--GDGKPGPVTKRLREAY 270 (270)
T ss_pred eCCHHHHhhCCEEEEecCcccEEEEEEE--CCeEC--CCCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999 67765 555 799999998764
No 21
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=6.6e-54 Score=397.74 Aligned_cols=267 Identities=22% Similarity=0.316 Sum_probs=221.3
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|+||++++.+++.++++|++|+||||+|||||++ +|+ +|+|++|++||.+||+.|+|+.| +.+.+++.+.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g~--~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NGK--LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 676 77899999999999999999977 7999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEe-ecCCCcccC-CC--CCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLV-GSGPILGLA-PA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~-g~~~~~g~~-~~--~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~K 179 (332)
++++. .+.+||+.+. |.+ ..+.. +. ..+.++++..|.+..+....+++++....+ .| ...+++|
T Consensus 77 ~~~~~-------~~~~irl~~~rg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~K 144 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRGVA-PRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVED-IR---WLRCDIK 144 (276)
T ss_pred HhcCC-------CceEEEEEEEcCCC-CcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecC-CC---ccCCCcc
Confidence 98763 3456666554 433 23333 21 234556666665422111113454433322 22 2347899
Q ss_pred cccChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEE
Q 020003 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVE 259 (332)
Q Consensus 180 t~~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~ 259 (332)
+. ||+.+++++++|++.|+||+|+++ +|+|+|++++|||++++++|+|||++.|+|+||||+.|+++|+++|++|+
T Consensus 145 ~~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~ 220 (276)
T TIGR01121 145 SL-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVK 220 (276)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEE
Confidence 96 999999999999999999999995 59999999999999999999999999999999999999999999999999
Q ss_pred EEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHHHhh
Q 020003 260 ERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTLVGI 316 (332)
Q Consensus 260 e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~~~~ 316 (332)
|+.++++||.+|||+|+|||++||+||.+| +++.+ +++ +||++++|+++|.+.
T Consensus 221 e~~i~~~el~~ade~fltns~~gi~PV~~i--d~~~~--~~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 221 EEPFTKEELLNADEVFVSSTTAEITPVIEI--DGQQI--GDGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred EEeCCHHHHhcCCEEEEecCcccEEEEEEE--CCEEC--CCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 57765 666 799999999999754
No 22
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=4.2e-53 Score=390.83 Aligned_cols=263 Identities=24% Similarity=0.312 Sum_probs=218.5
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 104 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~ 104 (332)
+|+||++ .+.++++|+||+||||+|||+|++ +|+ +++|++|++||++||+.|+|+.|+.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 6899996 567999999999999999999998 676 6678999999999999999998877788888877773
Q ss_pred HcCCCCCCCCCceEEEEEEEeecCCCcccCCC--CCeEEEEEEeecCccccCC-CcceEEEeeccccccCCCCCCCcccc
Q 020003 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 105 ~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
.. .++++|+.+..+.+..|+.+. ..+.++++..|+++++... .+++++.+++ ..+..++.++++||.
T Consensus 73 ~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 142 (268)
T PRK06092 73 EL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL 142 (268)
T ss_pred hC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh
Confidence 21 245677666533334455543 4557778888776433211 2456676643 344444457889996
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEE
Q 020003 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEER 261 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~ 261 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+++.++||||||+.++++|+++|++|+|+
T Consensus 143 -ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~ 219 (268)
T PRK06092 143 -NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEV 219 (268)
T ss_pred -hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999998 7999999999999999999999999888999999999999999999999999
Q ss_pred ecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHh
Q 020003 262 AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVG 315 (332)
Q Consensus 262 ~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~ 315 (332)
.++++||.+|||+|+|||++||+||.+| |++.+ + +||+++.|++.|+.
T Consensus 220 ~i~~~dL~~adevfltns~~gi~pV~~i--d~~~~--~--~g~~~~~l~~~~~~ 267 (268)
T PRK06092 220 DASLEELLQADEVFICNSLMPVWPVRAI--GETSY--S--SGTLTRYLQPLCER 267 (268)
T ss_pred ECCHHHHhhCCEEEEeCCcceEEEEEEE--CCEEc--c--chHHHHHHHHHHhc
Confidence 9999999999999999999999999999 67765 4 58999999998863
No 23
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=1.4e-52 Score=385.98 Aligned_cols=257 Identities=26% Similarity=0.364 Sum_probs=215.3
Q ss_pred eeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 020003 26 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105 (332)
Q Consensus 26 ~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~~ 105 (332)
|+||++ ++.++++|+||+||||+|||+|++ +|+ +|+|++|++||.+||+.|+|+.|+.+++++.+.++++.
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 789995 677999999999999999999998 676 67789999999999999999998889999999999886
Q ss_pred cCCCCCCCCCceEEEEEEEeecCCCcccCC--CCCeEEEEEEeecCccccCC-CcceEEEeeccccccCCCCCCCccccc
Q 020003 106 NKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 182 (332)
Q Consensus 106 ~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~~~g-~~~~~l~~~~~~~r~~p~~l~~~Kt~~ 182 (332)
+. ++++|+.+....+..|+.+ ...+.+++.+.|+++++... .+++++.+.+ .++..++.++++||.
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~- 140 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL- 140 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-
Confidence 42 3467766653222334433 24456777777775433211 2456666653 444444467899996
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEe
Q 020003 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERA 262 (332)
Q Consensus 183 ~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~ 262 (332)
||+.+++++++|+++|+||+|++|+ +|+|+|++++|||+++|++|+||+++.|+|+||||+.++++|++.|++|+|+.
T Consensus 141 ~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~ 218 (261)
T TIGR03461 141 NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVK 218 (261)
T ss_pred ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999998 79999999999999999999999998899999999999999999999999999
Q ss_pred cCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHH
Q 020003 263 IPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELY 310 (332)
Q Consensus 263 i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~ 310 (332)
++++||.+|||+|+|||++||+||.+| |++.+ + ++|+++.|+
T Consensus 219 i~~~eL~~ade~f~~ns~~gi~pV~~i--d~~~~--~--~~~~~~~l~ 260 (261)
T TIGR03461 219 AGLEELLSADEVFITNSLMGVVPVNAI--GETSY--P--SRTLTRLLQ 260 (261)
T ss_pred cCHHHHhhCCEEEEeCCccceEEEEEE--CCEEe--c--chHHHHHhh
Confidence 999999999999999999999999999 67776 4 578988874
No 24
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-51 Score=383.44 Aligned_cols=276 Identities=38% Similarity=0.591 Sum_probs=240.9
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~ 103 (332)
+|.||++++.+++.+++.|++++||+++|||+|++ +|+ +|++++|++||++||+.|+|+.| +.+++......++
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~---~g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 78 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAY---NGK--LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLL 78 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEe---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 464 88999999999999999999998 7888888888888
Q ss_pred HHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEeecCccccCCC--cceEEEeeccccccCCCCCCCcccc
Q 020003 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGL--APLNLYVEDEFHRATPGGAGGVKAI 181 (332)
Q Consensus 104 ~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g~--~~~~l~~~~~~~r~~p~~l~~~Kt~ 181 (332)
+.+.. ...+|+|+++++.++.+|+.+..++.+.+.+.|+++++..+. ++..+.+.+.+++..++....+|+.
T Consensus 79 ~~~~~------~~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~ 152 (284)
T COG0115 79 AKNNL------VPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTG 152 (284)
T ss_pred HhhCC------CCceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhhc
Confidence 77653 123899999988777777777667788889999988776542 4544545444555544445678885
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEE-CCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEE
Q 020003 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEIASDCGFQVEE 260 (332)
Q Consensus 182 ~~y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~-~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e 260 (332)
||+.+++++++|++.|+||+|++|. +|+|+|++++|||+++ ||+++||+++.++||||||+.+|++|+++|++++|
T Consensus 153 -~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~E 229 (284)
T COG0115 153 -NYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEE 229 (284)
T ss_pred -ccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEEE
Confidence 9999999999999999999999998 7999999999999999 88999999999999999999999999999999999
Q ss_pred EecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhhhccC
Q 020003 261 RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGL 320 (332)
Q Consensus 261 ~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~~~~~ 320 (332)
+.++.+||..|||+|+|||+++|+||.+| +++ . ..+||+|+.|++.|.+++.|.
T Consensus 230 ~~i~~~~l~~adevf~t~t~~~v~PV~~i--~~~-~---~~~gpit~~l~~~~~~~~~~~ 283 (284)
T COG0115 230 RPITLEDLKQADEVFLTNTAAGVTPVGLI--DGR-V---GQPGPVTKKLRELLTDIQYGE 283 (284)
T ss_pred eecCHHHHhhCCEEEEEccceEEEEEEEE--CCc-c---CCCChHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999 454 2 128999999999999998874
No 25
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=1.7e-51 Score=377.31 Aligned_cols=251 Identities=44% Similarity=0.669 Sum_probs=213.4
Q ss_pred CccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEE
Q 020003 43 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 121 (332)
Q Consensus 43 d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir 121 (332)
||||+||||+||||+++ +|+ +|+|++|++||.+||+.|+|+.| +.+.+++.+.+++++++. +.++||
T Consensus 1 drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KGR--LFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---CcE--EEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 78999999999999997 676 67789999999999999999965 899999999999988652 567889
Q ss_pred EEEeecCCCcccCC--CCCeEEEEEEeecCccccCCCcceEEEeecccccc-CCCCCCCcccccChHHHHHHHHHHHHCC
Q 020003 122 PLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVLKAISRAKNRG 198 (332)
Q Consensus 122 ~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~-~p~~l~~~Kt~~~y~~~~~a~~~a~~~g 198 (332)
+.++++.+.+++.+ ...+.+++++.|++++.....+++++.+.. ..|. .++.++++||. +|+.+++++++|+++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSP-DRRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEee-eEEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 87765444556643 356778888877764311123466776654 3443 44568999997 7799999999999999
Q ss_pred CCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeec
Q 020003 199 FSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278 (332)
Q Consensus 199 ~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~n 278 (332)
+||+|++|+ +|+|+|++++|||++++++|+||+++.|+|+||||+.|+++|+++|++|+|+.++++||.+|||+|+||
T Consensus 147 ~de~llld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~n 224 (256)
T cd00449 147 ADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTG 224 (256)
T ss_pred CCEEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEcc
Confidence 999999998 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEeEEEEeCCeEEeeCCC-ccHHHHHHHHHH
Q 020003 279 TAVVVAPVGSITYRGKRIEFKTG-AQSVSRELYSTL 313 (332)
Q Consensus 279 s~~gi~pV~~I~~~~~~i~~~~g-~g~~~~~L~~~~ 313 (332)
|++||+||++| +++.+ +.+ +||++++|+++|
T Consensus 225 s~~gv~pV~~i--~~~~~--~~~~~~~~~~~l~~~~ 256 (256)
T cd00449 225 TAAEVTPVTEI--DGRGI--GDGKPGPVTRKLRELL 256 (256)
T ss_pred ccceEEEEEEE--CCeec--CCCCCCHHHHHHHHhC
Confidence 99999999999 67776 545 799999998764
No 26
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=6.7e-51 Score=372.27 Aligned_cols=247 Identities=31% Similarity=0.451 Sum_probs=209.4
Q ss_pred CccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEE
Q 020003 43 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 122 (332)
Q Consensus 43 d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~ 122 (332)
||||+||||+|||++++ +|+ +|+|++|++||.+||+.|+|+.++.+++++.+.++++.++. ++++||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DGR--LFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CCE--EccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 79999999999999998 676 66799999999999999999944899999999999998763 4668888
Q ss_pred EEeecCCCcccCC--CCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCC
Q 020003 123 LLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFS 200 (332)
Q Consensus 123 ~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~d 200 (332)
.+..+.+..++.+ .+.+.+++...|++. ....+++++.+. ++.|..++.++++||. ||+.+++++++|+++|+|
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~d 144 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPP--AWRQDGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGAD 144 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCH--HHHhCCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCC
Confidence 7764333345543 345677777777653 111245667664 4566666779999996 999999999999999999
Q ss_pred eEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeeccc
Q 020003 201 DVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 201 e~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~ 280 (332)
|+|++|+ +|+|+|++++|||++++++|+||+++.|+||||||+.++++|+++|++++|+.++++||.+|||+|+|||+
T Consensus 145 e~l~l~~--~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~ 222 (249)
T cd01559 145 EALFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSL 222 (249)
T ss_pred EEEEEcC--CCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCc
Confidence 9999998 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHH
Q 020003 281 VVVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 313 (332)
Q Consensus 281 ~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~ 313 (332)
+||+||++| |+... .++|++++|+++|
T Consensus 223 ~gi~pV~~i--d~~~~----~~~~~~~~l~~~~ 249 (249)
T cd01559 223 LGVAPVTAI--DDHDG----PPGPLTRALRELL 249 (249)
T ss_pred cceeEEEEE--CCccc----CccHHHHHHHHhC
Confidence 999999999 44221 2799999998865
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-50 Score=371.76 Aligned_cols=256 Identities=17% Similarity=0.175 Sum_probs=211.9
Q ss_pred eeeCCeEeeCCCcccCcCCccccccceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 020003 25 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 104 (332)
Q Consensus 25 ~~~ng~~v~~~~~~v~~~d~~~~~G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~ 104 (332)
+|+||++++.+++. ++++||||+|||+|++ +|+ +++|++|++||.+||+.|++..++.+++++.+.++++
T Consensus 5 ~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~ 74 (266)
T PRK09266 5 IELNGRPATAEDLA-----ALALANYGHFTSMQVR---DGR--VRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALA 74 (266)
T ss_pred EEECCEECCHHHhh-----hHhhccceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 78999999998876 4999999999999998 676 6678999999999999986543478999999999984
Q ss_pred HcCCCCCCCCCceEEEEEEEeecCCCcccCC-CCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccC
Q 020003 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAP-APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISN 183 (332)
Q Consensus 105 ~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~-~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~ 183 (332)
. . .+.++||+.+.+..+.++..+ ...+.+++...|.++.+ .+++++.+. ++.|. ++++|+. +
T Consensus 75 ~-~-------~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~---~~~v~l~~~-~~~r~----~~~~K~~-~ 137 (266)
T PRK09266 75 A-G-------PADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGP---AGPLRLQSV-PYERE----LPHIKHV-G 137 (266)
T ss_pred c-C-------CCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCC---CCCeEEEEE-Eeccc----CCCCCCC-C
Confidence 3 2 246789987764333455432 23456677777654332 245666554 34443 4689997 7
Q ss_pred hHHHHHHHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEec
Q 020003 184 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAI 263 (332)
Q Consensus 184 y~~~~~a~~~a~~~g~de~llln~~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i 263 (332)
|+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++++|+||+. |+||||||+.|+++++++|++|+|+.+
T Consensus 138 ~l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i 213 (266)
T PRK09266 138 TFGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPV 213 (266)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEEC
Confidence 888899999999999999999998 7999999999999999999999984 799999999999999999999999999
Q ss_pred CHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCccHHHHHHHHHHHhh
Q 020003 264 PVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGI 316 (332)
Q Consensus 264 ~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~~~~~~ 316 (332)
+++||.+|||+|+|||++||+||.+| |++.+ +++ +|++++|++.|.+.
T Consensus 214 ~~~eL~~adevfltnSl~gi~pV~~i--~~~~~--~~~-~~~~~~l~~~~~~~ 261 (266)
T PRK09266 214 TLADLGRFAGAFACNAWRGQRAVSAI--DDVAL--PDS-HALLELLRRAYEAE 261 (266)
T ss_pred CHHHHHHhhHhhhhcCccceEEEEEE--CCEEC--CCC-chHHHHHHHHHHhc
Confidence 99999999999999999999999999 67776 433 79999999999643
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=2.3e-41 Score=305.26 Aligned_cols=226 Identities=29% Similarity=0.402 Sum_probs=170.8
Q ss_pred cChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecCCCcccCCCCCeEEEEEEee
Q 020003 69 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 147 (332)
Q Consensus 69 f~l~~Hl~RL~~Sa~~l~i~~p-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p 147 (332)
|+|++|++||.+||+.+ +..+ +.+.+++.+.+++++++. .+..++|+.+.++++..+..+............
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 56899999999999999 5444 789999999999998762 255699988876555555443322211111111
Q ss_pred cCcccc---CCCcceEEEeeccccccCCCCCCCcccccChHHHHH-HHHHHHHCCCCeEEEEccCCCCeEEEeCceeEEE
Q 020003 148 VGNYFK---EGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLK-AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI 223 (332)
Q Consensus 148 ~~~~~~---~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~-a~~~a~~~g~de~llln~~~~G~v~E~s~sNifi 223 (332)
.+.... .....+. +.. .....++.++++|+. +|+.+.+ +.++|++.|+||+|++|+ +|+|+|++++|||+
T Consensus 74 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNif~ 147 (231)
T PF01063_consen 74 PPRRPPPPLVGSVGVR--RAS-PPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNIFF 147 (231)
T ss_dssp TCHHHHEEEEEECSEE--CET-TTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEEEE
T ss_pred ccccCCcceeeeeeEE--ecc-ccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCccccc
Confidence 111110 0011121 111 111112248999997 6666666 667777899999999999 89999999999999
Q ss_pred EECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCCcc
Q 020003 224 LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQ 303 (332)
Q Consensus 224 v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~g 303 (332)
+++++|+||+++.|+|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++||+||++| +++.+ + .|
T Consensus 148 ~~~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i--~~~~~--~--~~ 221 (231)
T PF01063_consen 148 VKDGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSI--DGRSF--G--PG 221 (231)
T ss_dssp EETTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEE--TTEES--T--TH
T ss_pred ccCCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEE--CCEEC--C--CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 78876 4 79
Q ss_pred HHHHHHHHHH
Q 020003 304 SVSRELYSTL 313 (332)
Q Consensus 304 ~~~~~L~~~~ 313 (332)
|++++|+++|
T Consensus 222 p~~~~L~~~~ 231 (231)
T PF01063_consen 222 PITRRLQEAY 231 (231)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999986
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=296.71 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=169.1
Q ss_pred cceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeecC
Q 020003 49 GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 128 (332)
Q Consensus 49 G~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~ 128 (332)
..++|||++++. +|+ +++|++|++||++||+.|+++.+ .+.+++.+.++++++. +.+++|+.+...+
T Consensus 3 ~~~lfETi~~~~--~G~--~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g 69 (209)
T PRK07546 3 DFELIETLRWEP--GAG--FPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG 69 (209)
T ss_pred CccEEEEEEEeC--CCC--cccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC
Confidence 347999999871 355 67789999999999999999885 6788889988887532 4578887664322
Q ss_pred CCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEccC
Q 020003 129 PILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 208 (332)
Q Consensus 129 ~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~~ 208 (332)
.+.+...|+++.+. ..++++.+.. ..+..++.+.++||. ||+.+++++++|+++|+||+|++|+
T Consensus 70 -----------~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~- 133 (209)
T PRK07546 70 -----------RLTVETAPLPPLPP--DTVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE- 133 (209)
T ss_pred -----------CEEEEEecCCCCCC--CCcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC-
Confidence 24566777654222 1234454433 344555567899996 8999999999999999999999998
Q ss_pred CCCeEEEeCceeEEEEECCEEE-cCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeE
Q 020003 209 NKKNLEEVSSCNIFILKGNIIS-TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVG 287 (332)
Q Consensus 209 ~~G~v~E~s~sNifiv~~~~l~-TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~ 287 (332)
+|+|+|++++|||++++++|+ ||+++.|+|+||||+.+++. .+++|+.++++||.+|||+|+|||++||+||+
T Consensus 134 -~G~v~E~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~ 207 (209)
T PRK07546 134 -RGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAE 207 (209)
T ss_pred -CCcEEEcCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEE
Confidence 899999999999999999999 99999999999999999986 68999999999999999999999999999998
Q ss_pred EE
Q 020003 288 SI 289 (332)
Q Consensus 288 ~I 289 (332)
.|
T Consensus 208 ~~ 209 (209)
T PRK07546 208 LI 209 (209)
T ss_pred EC
Confidence 64
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-31 Score=234.16 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=138.1
Q ss_pred ceeeeeEEEEeccCCeEeecChhhHHHHHHHHHhhCCCCC-C-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEeec
Q 020003 50 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 127 (332)
Q Consensus 50 ~g~FEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~-p-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~ 127 (332)
.++||||+++ +|+ ++++++|++||.+||+.+++.. | +.+++.+.+.++ . .+.+|+|++. +.
T Consensus 3 ~~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~-~~ 65 (187)
T PRK07101 3 FPLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY-NA 65 (187)
T ss_pred CcceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe-cC
Confidence 3699999998 666 6778999999999999998854 4 677777666543 1 2456788655 44
Q ss_pred CCCcccCCCCCeEEEEEEeecCccccCCCcceEEEeeccccccCCCCCCCcccccChHHHHHHHHHHHHCCCCeEEEEcc
Q 020003 128 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 207 (332)
Q Consensus 128 ~~~~g~~~~~~~~~~i~~~p~~~~~~~g~~~~~l~~~~~~~r~~p~~l~~~Kt~~~y~~~~~a~~~a~~~g~de~llln~ 207 (332)
+. .-+...|+++.. .+++++... ++...++||. ++. .+....|+..|+||+|++|
T Consensus 66 g~-----------~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~- 120 (187)
T PRK07101 66 EI-----------YQVQYFPYQRRP---IRSFQPVYC-------DDIDYSLKYT-DRS--ALNELFAQKGECDEIIIIK- 120 (187)
T ss_pred Cc-----------EEEEEEcCCCCC---cCceEEEec-------CCcccccccC-CHH--HHHHHHHHhCCCCEEEEEc-
Confidence 31 223444553321 224444322 1234589997 442 2334455678999999997
Q ss_pred CCCCeEEEeCceeEEEEECCEEEcCCCCCCcccchHHHHHHHHHHHCCCcEEEEecCHhhHhccceeeeeccccee
Q 020003 208 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 283 (332)
Q Consensus 208 ~~~G~v~E~s~sNifiv~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi 283 (332)
+|+|+|++++|||++++++|+||| .|+|+||||+.+++. | +|+|+.++++||.+|||+|+|||++|+
T Consensus 121 --~G~v~E~~~sNi~~~~~~~~~TP~--~~~L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 121 --NGLVTDTSIGNLAFFDGKQWFTPK--KPLLKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred --CCEEEEccceEEEEEECCEEEcCC--CCCccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 599999999999999999999999 389999999999984 5 899999999999999999999999984
No 31
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=42.18 E-value=60 Score=26.22 Aligned_cols=61 Identities=31% Similarity=0.424 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHHHCCCcEEEEe----cCHhhHhccceeeeecccce---------eEEeEEEEeCCeEEee
Q 020003 238 ILAGITRKSIIEIASDCGFQVEERA----IPVDELLEADEVFCTGTAVV---------VAPVGSITYRGKRIEF 298 (332)
Q Consensus 238 iL~GitR~~vl~~~~~~g~~v~e~~----i~~~dL~~adevfl~ns~~g---------i~pV~~I~~~~~~i~~ 298 (332)
.|-||++..+-++.+..=-.++-+. +.+..+.-.|-+|+|++... |.-|.+++..-+.+.+
T Consensus 5 aLTGIs~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~Dl~~Gt~GiIa~V~~~~i~~qri~~ 78 (119)
T PF04322_consen 5 ALTGISRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVSLEDLTPGTEGIIAEVKKIEISMQRIVW 78 (119)
T ss_pred EEeccCHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCCHHHCCCCCCeEEEEEEEEEEEEEEEee
Confidence 5889999999888664322333333 55666777799999987543 6677777655555544
No 32
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=37.25 E-value=67 Score=24.55 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=37.8
Q ss_pred CcccchHHHHHH-HHHHHCCCcEE---------EEecCHhhHhccceeeeecccceeEEeEEEEeCCeEE
Q 020003 237 TILAGITRKSII-EIASDCGFQVE---------ERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 296 (332)
Q Consensus 237 giL~GitR~~vl-~~~~~~g~~v~---------e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i 296 (332)
|+-.+++-...+ +.++++|+++. +..++.+++..||-+++++... +..-.+.++++
T Consensus 10 G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~----~~~~rf~gk~v 75 (96)
T cd05569 10 GIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP----VDDERFAGKRV 75 (96)
T ss_pred chhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC----CchhhhCCCeE
Confidence 555555544444 58888998877 4557779999999999998764 22222356665
No 33
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=36.78 E-value=52 Score=24.04 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=32.0
Q ss_pred EEecCHhhHhccceee-ee-cccceeEEeEEEEeCCeEEeeCCCccHHHHHHHH
Q 020003 260 ERAIPVDELLEADEVF-CT-GTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYS 311 (332)
Q Consensus 260 e~~i~~~dL~~adevf-l~-ns~~gi~pV~~I~~~~~~i~~~~g~g~~~~~L~~ 311 (332)
||.++.++..+..-++ -| .++..=.||.++.++|+.+.|.+--|.+...|.+
T Consensus 12 Er~~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy~G~~GdLY~~L~k 65 (72)
T PF15507_consen 12 ERTQTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDYQGTYGDLYFFLMK 65 (72)
T ss_pred EEEEEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEeccccchhHHHHHHHH
Confidence 4555544443322111 12 4567789999999999999874225766666654
No 34
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=36.40 E-value=99 Score=23.08 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEEeeCCC--ccHHHHHHHHHH
Q 020003 246 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG--AQSVSRELYSTL 313 (332)
Q Consensus 246 ~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g--~g~~~~~L~~~~ 313 (332)
-|-+.+++.|++|..=. ..+++..+|.+.+++--..+..+..+..+.--|. ..| +..++..|++++
T Consensus 12 ~v~~~L~~~GyeVv~l~-~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVIn-A~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLE-NEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVIN-ASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecC-CccccCCcCEEEEECCCcccccccccccCceEEe-cCCCCHHHHHHHHHHhh
Confidence 45677888898876433 3346889999999998777766654332332332 234 577787777665
No 35
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=33.53 E-value=84 Score=23.56 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=32.8
Q ss_pred CcccchHHHHHHH-HHHHCCCcEE---------EEecCHhhHhccceeeeeccc
Q 020003 237 TILAGITRKSIIE-IASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 237 giL~GitR~~vl~-~~~~~g~~v~---------e~~i~~~dL~~adevfl~ns~ 280 (332)
|+-...|-...|+ .++++|+.+. +..++.+++..||-+++.+..
T Consensus 9 G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 9 GIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 5555555555554 6677898776 556888999999999999876
No 36
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=32.01 E-value=46 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHhhhccCCCCCCCCe
Q 020003 302 AQSVSRELYSTLVGIQTGLIKDNKGWT 328 (332)
Q Consensus 302 ~g~~~~~L~~~~~~~~~~~~~~~~~~~ 328 (332)
..-+++.|+++|.+.-+ .+|+|+
T Consensus 19 dT~v~r~l~~yY~~k~~----~~P~WL 41 (41)
T PF14475_consen 19 DTHVHRVLRKYYTEKGR----PFPGWL 41 (41)
T ss_pred hhHHHHHHHHHHHHcCC----CCCCcC
Confidence 45688888888887733 489996
No 37
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.51 E-value=76 Score=23.93 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCcEE---------EEecCHhhHhccceeeeeccc
Q 020003 245 KSIIEIASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 245 ~~vl~~~~~~g~~v~---------e~~i~~~dL~~adevfl~ns~ 280 (332)
+.+-+.++++|+.+. +..++.+++..||-|++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 345567888898776 445888999999999999875
No 38
>PRK03972 ribosomal biogenesis protein; Validated
Probab=28.24 E-value=3.9e+02 Score=23.76 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=53.2
Q ss_pred HHHHHHCCCCeEEEEccCCCCeEEEeCce----------------eEEEEECC-------------EEEcCCCCCCcccc
Q 020003 191 ISRAKNRGFSDVLYLDSVNKKNLEEVSSC----------------NIFILKGN-------------IISTPATSGTILAG 241 (332)
Q Consensus 191 ~~~a~~~g~de~llln~~~~G~v~E~s~s----------------Nifiv~~~-------------~l~TP~~~~giL~G 241 (332)
...|.+.|+.+.|++++. +|+......+ ||...++= .++|-.. =++
T Consensus 42 ~~~A~~~g~TdLIVV~E~-rg~P~~L~i~hLP~gP~GPTa~FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~----kt~ 116 (208)
T PRK03972 42 LMEAYDRGYERLLIINVW-KGNPLKMTFIKVGPEDWGYLGYLYLHGIKLQREMGFRNLRPIREDMPLVITTAK----RVG 116 (208)
T ss_pred HHHHHHCCCCeEEEEecC-CCcCCeEEEEcCCCCCCCceEEEEEccEEEHHHcccCCCCCccccccEEEEcCC----CCC
Confidence 356788999999999985 5644333222 33332221 1232211 122
Q ss_pred h-HHHHHHHHHHHCCCcEEEE-ecCHhhH-h--ccceee-eecccceeEEeE
Q 020003 242 I-TRKSIIEIASDCGFQVEER-AIPVDEL-L--EADEVF-CTGTAVVVAPVG 287 (332)
Q Consensus 242 i-tR~~vl~~~~~~g~~v~e~-~i~~~dL-~--~adevf-l~ns~~gi~pV~ 287 (332)
. .++..-++|.++|++..+| ..++++| . .+|.++ +..--+|+ -|+
T Consensus 117 ~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~~~~-~~~ 167 (208)
T PRK03972 117 LDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHPRGM-AVN 167 (208)
T ss_pred HHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCCCce-EEE
Confidence 2 3566677888899987776 4788888 2 346666 44555665 444
No 39
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=28.13 E-value=72 Score=22.29 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHHC---CCcEEEEec
Q 020003 240 AGITRKSIIEIASDC---GFQVEERAI 263 (332)
Q Consensus 240 ~GitR~~vl~~~~~~---g~~v~e~~i 263 (332)
-||||..|...++++ |+ ++.+.+
T Consensus 14 ~GiTRSvIVNALRKleSaGv-IesrSl 39 (61)
T PF08222_consen 14 VGITRSVIVNALRKLESAGV-IESRSL 39 (61)
T ss_dssp HT--HHHHHHHHHHHHHTTS-EEEEET
T ss_pred hCccHHHHHHHHHHHHhcCc-eeeccc
Confidence 489999999988774 64 666665
No 40
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=28.08 E-value=1.3e+02 Score=22.02 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=32.1
Q ss_pred EEcCCCCC-CcccchHH-HHHHHHHHHCCCcEEEEecCHhhHhccceeeeecccceeEEeEEEEeCCeEE
Q 020003 229 ISTPATSG-TILAGITR-KSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 296 (332)
Q Consensus 229 l~TP~~~~-giL~GitR-~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~I~~~~~~i 296 (332)
+|+|+..+ -++++-++ -.+.-+++.+|++.+...+.. . -+ .+-.|-+|+-.+ ||+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~--~~--~~P~GkVP~L~~--dg~vI 61 (74)
T cd03079 3 LYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----A--EF--MSPSGKVPFIRV--GNQIV 61 (74)
T ss_pred cccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----c--cc--cCCCCcccEEEE--CCEEE
Confidence 56666542 23334444 344457778899887664321 1 11 112499999654 78877
No 41
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.30 E-value=1.4e+02 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=28.1
Q ss_pred HHHHHH-HHHHHCCCcEE---------EEecCHhhHhccceeeeeccc
Q 020003 243 TRKSII-EIASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 243 tR~~vl-~~~~~~g~~v~---------e~~i~~~dL~~adevfl~ns~ 280 (332)
|-..-| ..|+++|+.|. +-.++.+|+..||.|++....
T Consensus 19 MAAeaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 19 MAAEALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEecc
Confidence 444444 57788887663 455999999999999997753
No 42
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=25.52 E-value=75 Score=25.43 Aligned_cols=44 Identities=34% Similarity=0.413 Sum_probs=30.1
Q ss_pred cccchHHHHHHHHHHHCCCcEEEEe----cCHhhHhccceeeeecccc
Q 020003 238 ILAGITRKSIIEIASDCGFQVEERA----IPVDELLEADEVFCTGTAV 281 (332)
Q Consensus 238 iL~GitR~~vl~~~~~~g~~v~e~~----i~~~dL~~adevfl~ns~~ 281 (332)
.|-||+|..|-++.+..--.++-+. .++.-|...|-+|+|++..
T Consensus 5 ~LtGIs~~vie~l~~~~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~ 52 (122)
T COG1935 5 ALTGISRRVIESLLRNPIRTIEIRSARNLLTVLRLHEGDLVFLTSTSL 52 (122)
T ss_pred EEechhHHHHHHHHhCCceEEEEEcccchHHhhcCCCCCEEEEehhHh
Confidence 5889999988877654322333333 4556677779999998754
No 43
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=23.72 E-value=57 Score=24.94 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHHHCCCcEEEEecCHhhHhcc
Q 020003 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEA 271 (332)
Q Consensus 240 ~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~a 271 (332)
-|=.-+.|++.|++.|+++.|.+..++.|...
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 46677899999999999999998887777553
No 44
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=2.1e+02 Score=23.30 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEE
Q 020003 77 RLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 121 (332)
Q Consensus 77 RL~~Sa~~l~i~~p-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir 121 (332)
-|..++.+|++..| +.+++...-.++-+-|.+. .+|..||.
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdks----kGGSFYLQ 98 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKS----KGGSFYLQ 98 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcc----cCcceeeh
Confidence 37889999999877 8999999888888877641 23555653
No 45
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.15 E-value=1.9e+02 Score=23.07 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=32.7
Q ss_pred CCcccchHHHHHHH-HHHHCCCcEE---------EEecCHhhHhccceeeeeccc
Q 020003 236 GTILAGITRKSIIE-IASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 280 (332)
Q Consensus 236 ~giL~GitR~~vl~-~~~~~g~~v~---------e~~i~~~dL~~adevfl~ns~ 280 (332)
.|+-...+-...|+ .++++|+.+. +..++.+++..||-+++.+..
T Consensus 13 ~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 13 SGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 35555555555554 6677898776 445788999999999998875
Done!