RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020003
(332 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 480 bits (1238), Expect = e-172
Identities = 134/344 (38%), Positives = 204/344 (59%), Gaps = 13/344 (3%)
Query: 2 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR
Sbjct: 29 ILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYR 88
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLY 119
DG +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G+ SLY
Sbjct: 89 WADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLY 148
Query: 120 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179
+RP ++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 149 LRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAK 208
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI----ISTPATS 235
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP S
Sbjct: 209 FGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELS 268
Query: 236 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSI 289
G++L GITR S++++A+D GF VEER I VDE + EVF GTA V+ PV +
Sbjct: 269 GSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHV 328
Query: 290 TYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
+ G ++ L TL GIQ G D GW +N
Sbjct: 329 KHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 462 bits (1191), Expect = e-164
Identities = 112/345 (32%), Positives = 174/345 (50%), Gaps = 18/345 (5%)
Query: 2 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 61
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 83
Query: 62 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 121
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+R
Sbjct: 84 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 143
Query: 122 PLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKA 180
P+L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 144 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKL 203
Query: 181 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI-----ISTPATS 235
NY P + A RG VL+L + + L EV + NIF+ + + TP +
Sbjct: 204 GGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLN 262
Query: 236 GTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGS 288
G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV
Sbjct: 263 GVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 322
Query: 289 ITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 331
I Y+ + + T + L IQ G+ W +
Sbjct: 323 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFPV 365
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 457 bits (1178), Expect = e-162
Identities = 115/347 (33%), Positives = 181/347 (52%), Gaps = 19/347 (5%)
Query: 2 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 120
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 121 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 179
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI-----ISTPAT 234
NY L A A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 223 MGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 281
Query: 235 SGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVG 287
G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA VV PV
Sbjct: 282 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVS 341
Query: 288 SITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
I Y+G+ I T ++ + S L IQ G + WT+ ++
Sbjct: 342 DILYKGETIHIPTMENGPKLASRILSKLTDIQYGREER--DWTIVLS 386
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 168 bits (429), Expect = 2e-50
Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 24/295 (8%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
L+YG +FEG++ Y G +V FR ++ RL A+ P SID+ ++A +
Sbjct: 30 LHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 105 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGL--APL 159
N S YIRPL+ VG +G+ P Y+ ++ A P G Y +
Sbjct: 89 KN-------NLTSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGI 140
Query: 160 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
+ V ++RA P KA NY L S A+ G+ + + LD + E +
Sbjct: 141 DAMVSS-WNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAG 197
Query: 219 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278
N+F +K ++ TP + + L GITR +II++A + G +V E+ + + L ADEVF +G
Sbjct: 198 ENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
Query: 279 TAVVVAPVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
TA + PV S+ I+ G V++ + G+ TG +D GW ++N
Sbjct: 258 TAAEITPVRSV----DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 308
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 167 bits (424), Expect = 1e-49
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 32/263 (12%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105
L G G+FE + DG ++ R + A + +P P ++ + A +
Sbjct: 43 LTRGDGIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 106 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP--------------EYTFLVFASPVGN 150
+ W P G L G GLA E+ V S G
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKLAQREHGVSVMTSSRGY 153
Query: 151 YFKEGLAPLNLYVEDEFHRAT----PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD 206
GL + E + P G K + YA + A+ AK+ GF DV++ D
Sbjct: 154 SIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTD 212
Query: 207 SVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVD 266
+ E ++ + KG+ I TP+ G IL G T+ ++ A++ G++ +E+ + +D
Sbjct: 213 G---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSID 269
Query: 267 ELLEADEVFCTGTAVVVAPVGSI 289
+L AD V+ + V +
Sbjct: 270 DLFGADSVWLVSSVRGPVRVTRL 292
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 165 bits (421), Expect = 3e-49
Identities = 88/295 (29%), Positives = 125/295 (42%), Gaps = 25/295 (8%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
L+YG +FEG++AY G + FR ++ R A+ + M P + ++ +A+K+
Sbjct: 29 LHYGTSVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 105 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEY--TFLVFASPVGNYFKEGL--APL 159
N G S YIRPL +G+ LG+ P P +V A G Y E
Sbjct: 88 RN-------GYRSCYIRPLAWMGAKA-LGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA 139
Query: 160 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
L + R G K NY A A G + L LD + + E S
Sbjct: 140 RLITSS-WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSG 196
Query: 219 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278
N+F ++ +I S L GITR S+I IA D G++V+ D+L ADEVF TG
Sbjct: 197 ENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTG 255
Query: 279 TAVVVAPVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
TA V PV I G V+ L + TG + +GW +N
Sbjct: 256 TAAEVTPVSMI----DWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 165 bits (420), Expect = 8e-49
Identities = 80/289 (27%), Positives = 124/289 (42%), Gaps = 23/289 (7%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
L+YG G+FEG++AY+ DG +FR ++ RL A+ M P + A +
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 105 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP-EYTFLVFASPVGNYFKEGL--APLN 160
NK S Y+RP++ +GS LG++ + A P G Y E +
Sbjct: 112 ENKL-------ESCYLRPIIWIGSEK-LGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIR 163
Query: 161 LYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 219
+ F R + KA Y + A A G+ + L LD + E S
Sbjct: 164 VKTSS-FTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGE 220
Query: 220 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 279
N F++ + TP + L GITR ++I +A + G +V E+ I DE+ ADE F TGT
Sbjct: 221 NFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGT 279
Query: 280 AVVVAPVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGW 327
A V P+ + GA+ ++ +L S + G + W
Sbjct: 280 AAEVTPIREL----DNRTIGGGARGPITEKLQSAFFDVVNGKSAKHADW 324
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 159 bits (404), Expect = 5e-47
Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%)
Query: 38 ELSPSSGV---LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 93
+++PS G+ + G+GLFE ++ + + RL A ++ +P S D
Sbjct: 12 DMTPSFGIDDRIFLGEGLFETIRVN---SSKP--SFAYMHWERLGNSARQLGIPFEISFD 66
Query: 94 QFIDAVKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFAS-PVGNY 151
+ + + Q + I+ +L G GLA + + L+F +
Sbjct: 67 DWFEHLIQKIQKDNL-------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQTFNYSIQ 118
Query: 152 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNK 210
P+ L + R +K++ NY ++ A +A G D L+ ++ N
Sbjct: 119 KH----PVRLISI-NWLRDKANPLYQLKSV-NYLEAII-AQRQAIAVGADDALFFNTEN- 170
Query: 211 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLE 270
++ E + N+F+++ NI+ TP IL GITR +I V+E ++ + +
Sbjct: 171 -HVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIED 229
Query: 271 ADEVFCTGTAVVVAPVGSI 289
AD VF T + + V S+
Sbjct: 230 ADAVFLTNSLQGIRRVLSL 248
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 156 bits (397), Expect = 4e-46
Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 29/257 (11%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105
+G G F + DG++ L + RLQ +R+ + Q +K A
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 106 NKRWVPPPGKGSLYIRPLLV--GSGPILGLAPAPEY--TFLVFASPVGNYFKEGLA-PLN 160
+ + ++ +++ GSG G + T ++ + ++ +
Sbjct: 74 QQ---------NGVLK-VVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGIT 122
Query: 161 LYVEDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 219
L + G+K + N VL S + + L LDS + + E +
Sbjct: 123 LALSP-VRLGRNPHLAGIKHL-NRLEQVL-IRSHLEQTNADEALVLDS--EGWVTECCAA 177
Query: 220 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 279
N+F KGN++ TP + GI R+ I + + +Q+ E ++E L+ADE+
Sbjct: 178 NLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNA 237
Query: 280 AVVVAPVGSITYRGKRI 296
+ V PV +
Sbjct: 238 LMPVMPVCAC--GDVSF 252
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 153 bits (388), Expect = 2e-44
Identities = 53/249 (21%), Positives = 91/249 (36%), Gaps = 26/249 (10%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105
L YG GLFE + G +++ RL+ G R+ +P + A
Sbjct: 41 LAYGDGLFETLAVR---AGTP--RLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAA 94
Query: 106 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLA-PLNL 161
+ ++ G G G AP ++ SP Y + + L
Sbjct: 95 LG---------DGVAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAYPERHWQQGVRL 144
Query: 162 YVEDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCN 220
+ A G+K + N VL A + + G ++ L LD + E N
Sbjct: 145 FAC-RTRLAEQPLLAGLKHL-NRLEQVL-ARAEWSDAGHAEGLMLDVHE--RVVEGVFSN 199
Query: 221 IFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 280
+ ++ + P +AG+ R ++E A G + R + + EL ADEVF +
Sbjct: 200 LLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQ 259
Query: 281 VVVAPVGSI 289
+ PV ++
Sbjct: 260 FGIWPVRAL 268
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 145 bits (369), Expect = 8e-42
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 35/247 (14%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
+ ++E ++ Y F ++ RL+ A+ +P S D+F +K A
Sbjct: 36 KSLQGAVYETLRTY---SRAP--FAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 105 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYV 163
K+ + I+ L SG +L SP+ E + + +
Sbjct: 91 EFKQ--------EVRIKVYLFPDSGEVL-----------FVFSPLNIPDLE--TGVEVKI 129
Query: 164 EDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 222
R +K + ++R + DV+ L + E S N+F
Sbjct: 130 S-NVRRIPDLSTPPALKI-TGR--TDIVLARREIVDCYDVILLGLNG--QVCEGSFSNVF 183
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
++K + TP+ IL GITR+++I++A VEER + V EL EADE+F T T+
Sbjct: 184 LVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAG 243
Query: 283 VAPVGSI 289
V PV +
Sbjct: 244 VVPVRRL 250
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 136 bits (346), Expect = 2e-38
Identities = 59/262 (22%), Positives = 97/262 (37%), Gaps = 52/262 (19%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
+G G++E +K Y +G++ F +++ RL AE++ + P + D+F + +
Sbjct: 24 YQFGDGVYEVVKVY---NGEM--FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 105 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLA-PAPEYTFLVFASPVGNYFKEGLAPLNLY 162
N + +I + G+ P P ++ N
Sbjct: 79 KN-------ELNTGHIYFQVTRGTSP-RAHQFPENTVKPVIIGYTKENPRPL-------- 122
Query: 163 VEDEFHRATPGGAGGVKAIS--------------NY-APVLKAISRAKNRGFSDVLYLDS 207
GVKA N VL A A +G + + L
Sbjct: 123 ---------ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAI-LHR 171
Query: 208 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 267
+ E SS N+F +K I+ T + IL GITR +I A++ V+E E
Sbjct: 172 --NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHE 229
Query: 268 LLEADEVFCTGTAVVVAPVGSI 289
L+ DE+F T T + PV I
Sbjct: 230 ALKMDELFVTSTTSEITPVIEI 251
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 134 bits (339), Expect = 8e-38
Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 39/247 (15%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105
L +G +F ++A G+ +++ RL+ A + + P + F++ ++ A
Sbjct: 18 LYHGASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRA 72
Query: 106 NKRWVPPPGKGSLYIRPLL-VGSGP-ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYV 163
+ + +R VG G + P P+ Y +EG+ + +
Sbjct: 73 FPK--------APCLRLRFTVGEGVRLSEARPYAPL-------PLSLY-REGV---RVRL 113
Query: 164 EDEFHRATPGGAGGVKAISNYAP-VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 222
+R P A K NY P L A+ A+ G + L LD+ ++ + S +
Sbjct: 114 TG--YRVHPDLAR-YKT-GNYLPYRL-ALEEARKEGAFEGLLLDAFG--HVVDGSRTSPL 166
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
+ + + L GITR+ + E A G +VE + L + G+ V
Sbjct: 167 LFREGTLYLLEG---GLEGITREKVAEAARGLGLRVERGLFRPEGL--RGHLLLAGSGVG 221
Query: 283 VAPVGSI 289
+ PV
Sbjct: 222 LLPVRPP 228
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 111 bits (280), Expect = 2e-29
Identities = 42/245 (17%), Positives = 71/245 (28%), Gaps = 36/245 (14%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 105
L E M+ G L A RL A + Q I V AL
Sbjct: 12 DTADFELIETMRWQ---PGTSFLRFDRHLA-RLYGSAAELGFACD--PQRIAEVLSDALD 65
Query: 106 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVED 165
R ++ R L + + P + LA
Sbjct: 66 GAR-------TAMRTR-LALARNGDATASAQP-----YEPLAADKVWILRLART------ 106
Query: 166 EFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 225
+ K S A S +VL + + + E + N+F
Sbjct: 107 --RLDSQNTLLRHKT-SRRQLYTHARSEYLVTQADEVLLANE--RGEICEGTITNVFADF 161
Query: 226 GN-IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVA 284
G+ +++TP +L G+ R +++ + EE D+L A +F + +
Sbjct: 162 GDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLI 216
Query: 285 PVGSI 289
P +
Sbjct: 217 PAKLV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 77.8 bits (192), Expect = 3e-17
Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 54/236 (22%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI-DAVKQTALAN 106
+ LFE + E GQ + R + + + + +
Sbjct: 3 WQFPLFETILI---EQGQAKNI--SYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALF 57
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF----LVFASPVGNYFKEGLAPLNLY 162
+G + R +L P + + VF + K
Sbjct: 58 T-----HREGLIRCRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK--------- 103
Query: 163 VEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 222
+ +L + + +++ + + + + S N+
Sbjct: 104 -------------------FSDRTLLNNL-LKQKEECDEIMI---IRQGKVTDCSIGNLI 140
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278
+ N TP +L G R ++E ++ R I ++L + +E+
Sbjct: 141 FRQNNQWITPDKP--LLEGTQRAKLLEQ-----KKIIAREIFFEDLAQYEEIRLIN 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 4e-07
Identities = 44/219 (20%), Positives = 68/219 (31%), Gaps = 73/219 (33%)
Query: 121 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHR----ATPGGA 175
RPL + G + E+ LV P ++F L +++F++ T G A
Sbjct: 7 RPLTLSHGSL-------EHVLLV---PTASFFIASQL-------QEQFNKILPEPTEGFA 49
Query: 176 GGVKAISN---YAPVLKAISRAKNRG----FSDVLYLDSVNKKNLEEVSSCNIFILKGNI 228
+ + L +S F VL L E +C L+GN
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENC---YLEGND 100
Query: 229 I-----STPATSGTILAGITRKSIIEI---ASDCGFQVEERAIPVDELLEADEVFCTGTA 280
I + T L K +I+ A + ++ L A G A
Sbjct: 101 IHALAAKLLQENDTTLV--KTKELIKNYITARIMAKRPFDKKSN-SALFRAVG---EGNA 154
Query: 281 VVVAPVGSITYRGKRIEFKTGAQSVS-------RELYST 312
+VA F G Q + R+LY T
Sbjct: 155 QLVA------------IF--GGQGNTDDYFEELRDLYQT 179
Score = 33.5 bits (76), Expect = 0.100
Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 62/220 (28%)
Query: 150 NYFKE--GLAPLNLYVEDEFHRAT--PGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 205
N+FK+ G + L++ V + T GG G + NY+ ++ +
Sbjct: 1651 NHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-- 1707
Query: 206 DSVNKKNLEEVSSCNIFIL-KGNIIST----PA---TSGTILAGITRKSII--------- 248
K + E S+ F KG + +T PA + K +I
Sbjct: 1708 -----KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 249 ---E---IASDCG---FQ-----VEERAIPVDELLEADEVFCTGTAVV-VAPVGSITYRG 293
E +AS + V R + + + DE+ + ++ + P G +
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GRVAASF 1821
Query: 294 KRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI-N 332
+ + + V + GW VEI N
Sbjct: 1822 SQEALQYVVERVGKR----------------TGWLVEIVN 1845
Score = 30.4 bits (68), Expect = 0.97
Identities = 51/293 (17%), Positives = 78/293 (26%), Gaps = 126/293 (43%)
Query: 3 WD--------NLGFGLT------P----------------ADYMYTMKCSNDYFEKGRLS 32
W+ GF + P +Y M + G+L
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIF--ETIVDGKLK 1702
Query: 33 ----------RYGKIELSPSSGVLN---YGQ--------GLFEGMKAYRKEDGQLVLFRP 71
G+L+ + Q FE +K G L
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK----SKG---LIPA 1755
Query: 72 DQ----------NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY- 119
D A L + A+ M SI+ ++ V + + VP G S Y
Sbjct: 1756 DATFAGHSLGEYAA--LASLADVM-----SIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 120 ---IRPLLVGSGPILGLAP--------APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFH 168
I P V + +LV V NY N
Sbjct: 1809 MIAINPGRVAAS--FSQEALQYVVERVGKRTGWLV--EIV-NY--------N-------- 1847
Query: 169 RATPGG----AGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNLEEV 216
AG ++A+ VL I + + D++ L S+ +LEEV
Sbjct: 1848 --VENQQYVAAGDLRALDTVTNVLNFI-KLQK---IDIIELQKSL---SLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 49/348 (14%), Positives = 79/348 (22%), Gaps = 132/348 (37%)
Query: 14 DYMYTMKCSNDYFEKGRLSRYGKI--------ELSPSSGVLNYGQGLFEGMKAYRKEDGQ 65
D +Y N F K +SR EL P+ VL G G G+
Sbjct: 117 DRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GS-------GK 163
Query: 66 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 125
+ A +C+ + + W+
Sbjct: 164 TWV-------------ALDVCLSYKVQCKMDFKI--------FWL--------------- 187
Query: 126 GSGPILGLAPAPEYTFLVFASPVGNYFKEG--LAPL-NLYVEDEFHRATPGGAGGVKAIS 182
+ N L L L ++ P S
Sbjct: 188 ---------------------NLKNCNSPETVLEMLQKLL-----YQIDPNWTSRSDHSS 221
Query: 183 NYAPVLKAISRAKNRGFSDVLY------LDSV-NKKNLEEVS-SCNIFILKGNIISTPAT 234
N + +I R Y L +V N K + SC I +++T
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------LLTTRFK 275
Query: 235 SGT-ILAGITRKSIIEIASDCGFQVEERA--------IPVDEL-LEADEVFCTGTAVVVA 284
T L+ T I +E +L E T ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV----LTTNPRRLS 331
Query: 285 PVGSITYRGK-RIEF--------KTGAQSVS---------RELYSTLV 314
+ G + T S R+++ L
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Score = 29.8 bits (66), Expect = 1.4
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 23/142 (16%)
Query: 110 VPPPGKGSLYIRPLLVGSGP-----ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVE 164
G+L + L+ + Y FL SP+ ++ +Y+E
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIE 114
Query: 165 --DEFHRA----TPGGAGGVKAISNYAPVLKAISRAKN------RGF--SDVLYLDSVNK 210
D + ++ L + AKN G + + LD
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLS 173
Query: 211 KNLEEVSSCNIFILK-GNIIST 231
++ IF L N S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSP 195
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.3 bits (73), Expect = 0.13
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 15/59 (25%)
Query: 210 KKNLEEVSSC-NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 267
NL V +C + I+ + G + + + CG + ++ + D
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFS-EGDV-----------VCALCGLVLSDKLV--DT 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.20
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 57 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 102
+A +K L L+ D +P++ A+K T
Sbjct: 20 QALKKLQASLKLYADDS---------------APAL-----AIKAT 45
Score = 27.2 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 153 KEGL----APLNLYVEDEFHRATPGGAGGVKA 180
K+ L A L LY +D + P A +KA
Sbjct: 19 KQALKKLQASLKLYADD----SAP--ALAIKA 44
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing
proteins); PSI-2, midwest center for structural
genomics; 1.65A {Chromobacterium violaceum}
Length = 113
Score = 29.8 bits (68), Expect = 0.38
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 243 TRKSIIEIASDCGF 256
T KSI++I CGF
Sbjct: 71 TSKSIVQIGLACGF 84
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 31.5 bits (72), Expect = 0.39
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 16/64 (25%)
Query: 233 ATSGTILAGITRKSIIEIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAV 281
T G + + EIA S V E A+PV L D + G +
Sbjct: 221 PTRGGLATTLN-----EIAGQSQAVCHVLETAVPVRESVRNGCSFLGLDPLYLANEGKLI 275
Query: 282 VVAP 285
+ P
Sbjct: 276 CILP 279
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 31.0 bits (71), Expect = 0.42
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 233 ATSGTILAGITRKSIIEIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAV 281
T G + + EI+ S G ++ E +PV E + D + G V
Sbjct: 200 PTRGGVAEVL-----YEISKMSGVGIKIYEEKLPVKESVKSACEFMGIDFLHLANEGKVV 254
Query: 282 VVAP 285
VV
Sbjct: 255 VVVE 258
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 30.3 bits (69), Expect = 0.80
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 16/64 (25%)
Query: 233 ATSGTILAGITRKSIIEIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAV 281
AT G + A + E A CG ++ E A+PV ELL D G V
Sbjct: 220 ATRGGVNAVVH-----EFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV 274
Query: 282 VVAP 285
+
Sbjct: 275 IAVE 278
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 30.3 bits (69), Expect = 0.94
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 249 EIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAVVVAP 285
EIA S+ G V E IP+ E+L +V G V+V
Sbjct: 233 EIARKSNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVA 280
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'-
D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP
*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator;
HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8
PDB: 1xs9_A
Length = 129
Score = 28.8 bits (65), Expect = 1.1
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 243 TRKSIIEIASDCGFQ 257
+ + I+ +A GF+
Sbjct: 75 SNEPILYLAERYGFE 89
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131,
NYSGXRC, structural genomics, protein structure
initiative; 2.04A {Pseudomonas syringae PV}
Length = 398
Score = 28.3 bits (63), Expect = 3.5
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 27 EKGRLSRYGKIELSPSSGVLNY-----GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTG 81
+ ++ G L P++ + + +GLFE + +A
Sbjct: 300 QPAQILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAM------DATDRSDT 353
Query: 82 AERMCMPSPSID------QFIDAVKQTALANKRWVP 111
+ P ID ++++ +A + WV
Sbjct: 354 QALSAVRYPGIDAGVEGVRWVERCVLSADNDSIWVA 389
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 28.4 bits (64), Expect = 3.7
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 208 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 267
VN++ +++ NI + KG + S I G+TRK +I + E
Sbjct: 335 VNEERMKK----NIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLE 390
Query: 268 LLEADE 273
L DE
Sbjct: 391 YLLEDE 396
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B),
unknown function; 2.20A {Thermus thermophilus}
Length = 116
Score = 27.1 bits (59), Expect = 3.8
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 113 PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATP 172
PG G+LY+ P + GP L A +VF P+ + L + YV+
Sbjct: 16 PGLGTLYVDPSTLPEGPFLAYDRAGNLVKVVFMVPL-----KKLNESHKYVDIGTKTLRA 70
Query: 173 GGAGGVKAISNY 184
G + ++
Sbjct: 71 LGITRIDHVNMI 82
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 28.4 bits (64), Expect = 3.9
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 208 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 267
V +N++ N+ G I S I G+ R+ +I + E + E
Sbjct: 347 VYPENMKR----NMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKE 402
Query: 268 LLEADE 273
L+EADE
Sbjct: 403 LVEADE 408
>3mn2_A Probable ARAC family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 108
Score = 26.8 bits (60), Expect = 4.8
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 239 LAGITRKSIIEIASDCGF 256
G T ++ A CGF
Sbjct: 64 SDGATPTTVTAAALSCGF 81
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix,
ARAC family, activator, DNA-binding transcription,
transcription regulation; HET: PAM; 1.90A {Vibrio
cholerae}
Length = 276
Score = 27.2 bits (60), Expect = 7.0
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 243 TRKSIIEIASDCGFQ 257
I +IA GF
Sbjct: 232 GEFKIKQIAYQSGFA 246
>1d5y_A ROB transcription factor; protein-DNA complex, DNA,
transcription/DNA complex; HET: DNA; 2.70A {Escherichia
coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Length = 292
Score = 27.1 bits (60), Expect = 7.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 243 TRKSIIEIASDCGFQ 257
T + I++IA F
Sbjct: 67 TARPILDIALQYRFD 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.405
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,260,685
Number of extensions: 327858
Number of successful extensions: 740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 43
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)