Your job contains 1 sequence.
>020004
MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSC
GPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA
MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAA
IIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPV
LVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVD
ECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020004
(332 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043738 - symbol:AT2G13840 species:3702 "Arabi... 1097 4.2e-111 1
UNIPROTKB|Q3Z644 - symbol:DET1610 "PHP domain N-terminal ... 329 1.0e-29 1
TIGR_CMR|DET_1610 - symbol:DET_1610 "PHP domain N-termina... 329 1.0e-29 1
UNIPROTKB|Q3A9Z4 - symbol:CHY_2227 "PHP domain protein" s... 293 6.6e-26 1
TIGR_CMR|CHY_2227 - symbol:CHY_2227 "PHP domain protein" ... 293 6.6e-26 1
UNIPROTKB|Q8ECV6 - symbol:trpH "PHP family metal-dependen... 227 6.5e-19 1
TIGR_CMR|SO_3017 - symbol:SO_3017 "TrpH family protein" s... 227 6.5e-19 1
UNIPROTKB|Q74D71 - symbol:GSU1448 "Metal-dependent phosph... 219 4.6e-18 1
TIGR_CMR|GSU_1448 - symbol:GSU_1448 "PHP domain protein" ... 219 4.6e-18 1
UNIPROTKB|Q60BV5 - symbol:MCA0359 "PHP domain protein" sp... 198 7.4e-15 1
UNIPROTKB|Q885M1 - symbol:PSPTO_1810 "PHP domain protein"... 196 3.4e-14 1
UNIPROTKB|P77766 - symbol:yciV "conserved protein" specie... 189 3.9e-13 1
UNIPROTKB|Q47YC5 - symbol:CPS_3521 "PHP domain protein" s... 188 6.6e-13 1
TIGR_CMR|CPS_3521 - symbol:CPS_3521 "PHP domain protein" ... 188 6.6e-13 1
UNIPROTKB|Q9KSS9 - symbol:VC_1177 "Putative uncharacteriz... 184 1.7e-12 1
TIGR_CMR|VC_1177 - symbol:VC_1177 "conserved hypothetical... 184 1.7e-12 1
>TAIR|locus:2043738 [details] [associations]
symbol:AT2G13840 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA;ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
EMBL:CP002685 GO:GO:0003677 GO:GO:0006260 EMBL:AC006218
EMBL:AC006436 GO:GO:0003887 SUPFAM:SSF89550 KO:K07053
IPI:IPI00546711 PIR:C84511 RefSeq:NP_565360.1 UniGene:At.26505
ProteinModelPortal:Q9ZQI9 SMR:Q9ZQI9 STRING:Q9ZQI9
EnsemblPlants:AT2G13840.1 GeneID:815867 KEGG:ath:AT2G13840
TAIR:At2g13840 HOGENOM:HOG000239493 InParanoid:Q9ZQI9 OMA:MEYIAIC
PhylomeDB:Q9ZQI9 ProtClustDB:CLSN2688093 ArrayExpress:Q9ZQI9
Genevestigator:Q9ZQI9 Uniprot:Q9ZQI9
Length = 434
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 205/328 (62%), Positives = 257/328 (78%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
VKVL+LTDHDTM+G+PEA+E RRFG+KIIPG+EIST+F R S SEEPVHILAYY + G
Sbjct: 96 VKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPGIEISTLFGLRDSGSEEPVHILAYYGTSG 155
Query: 62 PSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAM 121
P+ Y+ELE+FL IRDGRF+R ++M+ WEHV +IAGK VAPGR+HVARA+
Sbjct: 156 PALYDELEDFLVKIRDGRFVRGREMVLKLNKLKIPLKWEHVTRIAGKDVAPGRMHVARAL 215
Query: 122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAI 181
+EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+LI +TGG+AVLAHPWALKN I
Sbjct: 216 LEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGGVAVLAHPWALKNHVGI 275
Query: 182 IRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLXXXXXXXXXXXXESELGSVKLPVL 241
IR+LKD GLHG+EVYRSDGKL +++LADTY LLKL ESELGSV LPV
Sbjct: 276 IRRLKDAGLHGVEVYRSDGKLEVFSELADTYNLLKLGGSDYHGKGGRNESELGSVNLPVT 335
Query: 242 VLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDE 301
L DFL V RPIWC AIK + ++ D+PSDSNLS+I R+ + ++LK N +CGK L+D
Sbjct: 336 ALQDFLNVGRPIWCEAIKATMRAFLDQPSDSNLSNILRFDKARILKGNSAWSCGKELMDR 395
Query: 302 CLSLWLTNEERQSAEFEAIKLKLSHVSI 329
CL++WLT++ER S +FEA++LKLS V I
Sbjct: 396 CLAIWLTSDERNSNDFEALRLKLSFVPI 423
>UNIPROTKB|Q3Z644 [details] [associations]
symbol:DET1610 "PHP domain N-terminal region family
protein" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 OMA:MEYIAIC
HOGENOM:HOG000248105 RefSeq:YP_182305.1 ProteinModelPortal:Q3Z644
STRING:Q3Z644 GeneID:3229067 KEGG:det:DET1610 PATRIC:21610232
ProtClustDB:CLSK836789 BioCyc:DETH243164:GJNF-1611-MONOMER
Uniprot:Q3Z644
Length = 287
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 84/268 (31%), Positives = 139/268 (51%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFG-MKIIPGVEISTIFCQRGSESEEPVHILAYYSSC 60
++ +A+ DHD + G+ AIE RR+ +++IPGVEIST + G + VHIL Y+
Sbjct: 32 MEYIAICDHDNLGGVGIAIEATRRYPKLRVIPGVEISTDYS--GGD----VHILGYFVD- 84
Query: 61 GPSKYEE--LENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVA 118
Y++ L + L +R R RA+DM+ W+ V++IAG+G GR H+A
Sbjct: 85 ----YQDPVLNDTLTEMRRSRVERARDMVIKLNGLGMEISWQRVSEIAGEGTV-GRPHIA 139
Query: 119 RAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP 178
AM+E G+++N+ +AF +Y+ GGPAY + E AV+L+ GG+ V+AHP + +
Sbjct: 140 TAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMNPEEAVRLVLSCGGIPVMAHPLTIMDH 199
Query: 179 AAIIRKLKDVGLHGLEVYR---SDGKLVAYTDLADTYGLLKLXXXXXXXXXXXXESELGS 235
++ +L GL GLE + + ++ LA + LL E+ +G
Sbjct: 200 EPMVERLVQAGLMGLECHYGGFNPQQIDGLVKLAGKHHLLTTGGSDYHGLDELTETPIGG 259
Query: 236 VKLPVLVLNDFLKVARPIWCGAIKEILE 263
++P+ + AR I + E +E
Sbjct: 260 AEVPLQDAKKLIAKARQIKAKGLAEDME 287
>TIGR_CMR|DET_1610 [details] [associations]
symbol:DET_1610 "PHP domain N-terminal region family
protein" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 OMA:MEYIAIC
HOGENOM:HOG000248105 RefSeq:YP_182305.1 ProteinModelPortal:Q3Z644
STRING:Q3Z644 GeneID:3229067 KEGG:det:DET1610 PATRIC:21610232
ProtClustDB:CLSK836789 BioCyc:DETH243164:GJNF-1611-MONOMER
Uniprot:Q3Z644
Length = 287
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 84/268 (31%), Positives = 139/268 (51%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFG-MKIIPGVEISTIFCQRGSESEEPVHILAYYSSC 60
++ +A+ DHD + G+ AIE RR+ +++IPGVEIST + G + VHIL Y+
Sbjct: 32 MEYIAICDHDNLGGVGIAIEATRRYPKLRVIPGVEISTDYS--GGD----VHILGYFVD- 84
Query: 61 GPSKYEE--LENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVA 118
Y++ L + L +R R RA+DM+ W+ V++IAG+G GR H+A
Sbjct: 85 ----YQDPVLNDTLTEMRRSRVERARDMVIKLNGLGMEISWQRVSEIAGEGTV-GRPHIA 139
Query: 119 RAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP 178
AM+E G+++N+ +AF +Y+ GGPAY + E AV+L+ GG+ V+AHP + +
Sbjct: 140 TAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMNPEEAVRLVLSCGGIPVMAHPLTIMDH 199
Query: 179 AAIIRKLKDVGLHGLEVYR---SDGKLVAYTDLADTYGLLKLXXXXXXXXXXXXESELGS 235
++ +L GL GLE + + ++ LA + LL E+ +G
Sbjct: 200 EPMVERLVQAGLMGLECHYGGFNPQQIDGLVKLAGKHHLLTTGGSDYHGLDELTETPIGG 259
Query: 236 VKLPVLVLNDFLKVARPIWCGAIKEILE 263
++P+ + AR I + E +E
Sbjct: 260 AEVPLQDAKKLIAKARQIKAKGLAEDME 287
>UNIPROTKB|Q3A9Z4 [details] [associations]
symbol:CHY_2227 "PHP domain protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 RefSeq:YP_361040.1
ProteinModelPortal:Q3A9Z4 STRING:Q3A9Z4 GeneID:3726733
KEGG:chy:CHY_2227 PATRIC:21277521 HOGENOM:HOG000248105 OMA:TRAHYAR
ProtClustDB:CLSK2772296 BioCyc:CHYD246194:GJCN-2226-MONOMER
Uniprot:Q3A9Z4
Length = 278
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 74/221 (33%), Positives = 118/221 (53%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
+K+LA+TDHD+ +G+ EA+E +++G+K+IPGVEIS +F E E +HIL Y
Sbjct: 29 LKILAVTDHDSAAGVIEAVEAGKKYGVKVIPGVEISVVF-----EPTE-MHILGYGIDVN 82
Query: 62 PSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAM 121
+ E L +++ R R M+ E V AG + GR H+AR +
Sbjct: 83 DPIFAEA---LTKLKENRERRNPKMLAKLRELGFEITLEEVIAEAGGDIV-GRPHMARVL 138
Query: 122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP--- 178
++ G+V ++++AF++YL G PAY + + A+ +I + GGL LAHP L+
Sbjct: 139 LKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTPKQAINIIKKAGGLTFLAHPVYLEKDDEG 198
Query: 179 -AAIIRKLKDVGLHGLEVY---RSDGKLVAYTDLADTYGLL 215
I+ +L GL G+E Y ++ + Y +LA Y LL
Sbjct: 199 LKKILEELISYGLDGIEAYYTYHNEEQTRLYLELAGKYNLL 239
>TIGR_CMR|CHY_2227 [details] [associations]
symbol:CHY_2227 "PHP domain protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 KO:K07053 RefSeq:YP_361040.1
ProteinModelPortal:Q3A9Z4 STRING:Q3A9Z4 GeneID:3726733
KEGG:chy:CHY_2227 PATRIC:21277521 HOGENOM:HOG000248105 OMA:TRAHYAR
ProtClustDB:CLSK2772296 BioCyc:CHYD246194:GJCN-2226-MONOMER
Uniprot:Q3A9Z4
Length = 278
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 74/221 (33%), Positives = 118/221 (53%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
+K+LA+TDHD+ +G+ EA+E +++G+K+IPGVEIS +F E E +HIL Y
Sbjct: 29 LKILAVTDHDSAAGVIEAVEAGKKYGVKVIPGVEISVVF-----EPTE-MHILGYGIDVN 82
Query: 62 PSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAM 121
+ E L +++ R R M+ E V AG + GR H+AR +
Sbjct: 83 DPIFAEA---LTKLKENRERRNPKMLAKLRELGFEITLEEVIAEAGGDIV-GRPHMARVL 138
Query: 122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP--- 178
++ G+V ++++AF++YL G PAY + + A+ +I + GGL LAHP L+
Sbjct: 139 LKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTPKQAINIIKKAGGLTFLAHPVYLEKDDEG 198
Query: 179 -AAIIRKLKDVGLHGLEVY---RSDGKLVAYTDLADTYGLL 215
I+ +L GL G+E Y ++ + Y +LA Y LL
Sbjct: 199 LKKILEELISYGLDGIEAYYTYHNEEQTRLYLELAGKYNLL 239
>UNIPROTKB|Q8ECV6 [details] [associations]
symbol:trpH "PHP family metal-dependent phosphoesterases
TrpH" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 SUPFAM:SSF89550 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:NP_718585.1 ProteinModelPortal:Q8ECV6
GeneID:1170705 KEGG:son:SO_3017 PATRIC:23525670
ProtClustDB:CLSK906959 Uniprot:Q8ECV6
Length = 286
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 68/200 (34%), Positives = 102/200 (51%)
Query: 2 VKVLALTDHDTMSGIPEA--IETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
V++ A+TDHDT++G+ EA A+ +K+I GVEIST R + + +HI+A
Sbjct: 35 VQLFAITDHDTVAGLSEARAFNQAQAEPLKLISGVEIST----RWNSYD--IHIVALNFD 88
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVAR 119
+ EL FLA+ R+ R RA+++ +E K+A G A R H AR
Sbjct: 89 ---ETHAELLRFLAHQRELREQRAEEIGHRLAKAGIEGAYEGAKKLAA-GAALSRGHYAR 144
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
+ + GH ++ F RYL G Y + A+++IH GGLAVLAHP K A
Sbjct: 145 WLADNGHAVDMPSVFKRYLARGKTGYVPNNWGDMASAIKVIHNAGGLAVLAHPSGYKLSA 204
Query: 180 A----IIRKLKDVGLHGLEV 195
++R+ K+ G +EV
Sbjct: 205 KWLKRLVREFKEAGGDAMEV 224
>TIGR_CMR|SO_3017 [details] [associations]
symbol:SO_3017 "TrpH family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=ISS] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
SUPFAM:SSF89550 HOGENOM:HOG000248104 KO:K07053 OMA:TRAHYAR
RefSeq:NP_718585.1 ProteinModelPortal:Q8ECV6 GeneID:1170705
KEGG:son:SO_3017 PATRIC:23525670 ProtClustDB:CLSK906959
Uniprot:Q8ECV6
Length = 286
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 68/200 (34%), Positives = 102/200 (51%)
Query: 2 VKVLALTDHDTMSGIPEA--IETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
V++ A+TDHDT++G+ EA A+ +K+I GVEIST R + + +HI+A
Sbjct: 35 VQLFAITDHDTVAGLSEARAFNQAQAEPLKLISGVEIST----RWNSYD--IHIVALNFD 88
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVAR 119
+ EL FLA+ R+ R RA+++ +E K+A G A R H AR
Sbjct: 89 ---ETHAELLRFLAHQRELREQRAEEIGHRLAKAGIEGAYEGAKKLAA-GAALSRGHYAR 144
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
+ + GH ++ F RYL G Y + A+++IH GGLAVLAHP K A
Sbjct: 145 WLADNGHAVDMPSVFKRYLARGKTGYVPNNWGDMASAIKVIHNAGGLAVLAHPSGYKLSA 204
Query: 180 A----IIRKLKDVGLHGLEV 195
++R+ K+ G +EV
Sbjct: 205 KWLKRLVREFKEAGGDAMEV 224
>UNIPROTKB|Q74D71 [details] [associations]
symbol:GSU1448 "Metal-dependent phosphoesterase, PHP
family" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003887
SUPFAM:SSF89550 KO:K07053 HOGENOM:HOG000248105 RefSeq:NP_952499.1
ProteinModelPortal:Q74D71 DNASU:2687782 GeneID:2687782
KEGG:gsu:GSU1448 PATRIC:22025739 OMA:GVPVTWE ProtClustDB:CLSK828358
BioCyc:GSUL243231:GH27-1427-MONOMER Uniprot:Q74D71
Length = 288
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 70/223 (31%), Positives = 109/223 (48%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAY-YSSCGPS 63
LA+ DHD + GI EA+ R G+ +IP VE+S + G S+ +HIL Y P+
Sbjct: 34 LAIADHDAVDGIDEAVAEGVRLGVDVIPAVELSV---ELGRFSD--LHILGYCIDHHDPA 88
Query: 64 KYEELENFLANIRDGRFLRAKDMIXXXXXXXXXX--XWEHVAKIAGKGVAPGRLHVARAM 121
++L F + RD R + I ++ V +AG V GR H+ R +
Sbjct: 89 FRDKLAGF-RSARDNRGKAILEKINRRLLHSRKAPLSYDEVLSMAGGAV--GRPHIGRVL 145
Query: 122 VEAGHVENLKQAFARYLYDGG-PA-YSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
V+ G+ +++ AF RYL P Y E +AE I R GG++VLAHP + +
Sbjct: 146 VDNGYARDMEDAFRRYLIPCNVPKRYMPAGEAIAE-----IRRIGGVSVLAHPPTITDDR 200
Query: 180 A----IIRKLKDVGLHGLEVYRS---DGKLVAYTDLADTYGLL 215
++ +L +GL GLEV+ + ++ LA+ +GLL
Sbjct: 201 RRLRQVVEQLAQLGLDGLEVFNNLCFKDDMLYLERLAEEFGLL 243
>TIGR_CMR|GSU_1448 [details] [associations]
symbol:GSU_1448 "PHP domain protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR016195
Pfam:PF02811 SMART:SM00481 GO:GO:0003677 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003887
SUPFAM:SSF89550 KO:K07053 HOGENOM:HOG000248105 RefSeq:NP_952499.1
ProteinModelPortal:Q74D71 DNASU:2687782 GeneID:2687782
KEGG:gsu:GSU1448 PATRIC:22025739 OMA:GVPVTWE ProtClustDB:CLSK828358
BioCyc:GSUL243231:GH27-1427-MONOMER Uniprot:Q74D71
Length = 288
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 70/223 (31%), Positives = 109/223 (48%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAY-YSSCGPS 63
LA+ DHD + GI EA+ R G+ +IP VE+S + G S+ +HIL Y P+
Sbjct: 34 LAIADHDAVDGIDEAVAEGVRLGVDVIPAVELSV---ELGRFSD--LHILGYCIDHHDPA 88
Query: 64 KYEELENFLANIRDGRFLRAKDMIXXXXXXXXXX--XWEHVAKIAGKGVAPGRLHVARAM 121
++L F + RD R + I ++ V +AG V GR H+ R +
Sbjct: 89 FRDKLAGF-RSARDNRGKAILEKINRRLLHSRKAPLSYDEVLSMAGGAV--GRPHIGRVL 145
Query: 122 VEAGHVENLKQAFARYLYDGG-PA-YSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
V+ G+ +++ AF RYL P Y E +AE I R GG++VLAHP + +
Sbjct: 146 VDNGYARDMEDAFRRYLIPCNVPKRYMPAGEAIAE-----IRRIGGVSVLAHPPTITDDR 200
Query: 180 A----IIRKLKDVGLHGLEVYRS---DGKLVAYTDLADTYGLL 215
++ +L +GL GLEV+ + ++ LA+ +GLL
Sbjct: 201 RRLRQVVEQLAQLGLDGLEVFNNLCFKDDMLYLERLAEEFGLL 243
>UNIPROTKB|Q60BV5 [details] [associations]
symbol:MCA0359 "PHP domain protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0003887
SUPFAM:SSF89550 HOGENOM:HOG000248104 KO:K07053 OMA:TRAHYAR
RefSeq:YP_112891.1 ProteinModelPortal:Q60BV5 GeneID:3104707
KEGG:mca:MCA0359 PATRIC:22604461 Uniprot:Q60BV5
Length = 277
Score = 198 (74.8 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 66/221 (29%), Positives = 103/221 (46%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
++ LALTDHD+++G+ EA A G+ +IPGVE+S + ES +H++ +
Sbjct: 29 IRTLALTDHDSVAGLKEAGAAAAEAGLCLIPGVELSVTW-----ESRT-IHVVGL--NIV 80
Query: 62 PSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAM 121
P + L + ++ RF RA++M E +AG G+ R H ARA+
Sbjct: 81 PD-HPGLNQGMRRLQAVRFERAQEMDRRLTKKGIPGTLEIAVGLAGAGMVT-RTHFARAL 138
Query: 122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAI 181
V+ G ++ F ++L G P + AV I GG+AVLAHP K +
Sbjct: 139 VQLGQAATVRDVFDKFLTQGKPGHVPTVWAEMTAAVGWIIEAGGVAVLAHPQRYKMTGSW 198
Query: 182 IRKL----KDVGLHGLEVYRSDGK---LVAYTDLADTYGLL 215
I +L K G +EV + + A +A +GLL
Sbjct: 199 IGRLAGDFKAAGGEAIEVVSGNATSSDIQANAAIARRHGLL 239
>UNIPROTKB|Q885M1 [details] [associations]
symbol:PSPTO_1810 "PHP domain protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE016853 GenomeReviews:AE016853_GR GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:NP_791635.1 ProteinModelPortal:Q885M1
GeneID:1183451 KEGG:pst:PSPTO_1810 PATRIC:19994884
ProtClustDB:CLSK867810 BioCyc:PSYR223283:GJIX-1845-MONOMER
Uniprot:Q885M1
Length = 287
Score = 196 (74.1 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 64/203 (31%), Positives = 94/203 (46%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAY-YSSC 60
V+VL+LTDHDT+ G+ EA A GM+++ GVE+S C G + +H+L Y + +
Sbjct: 30 VRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGVELS---CTWGGAT---IHVLGYGFDTQ 83
Query: 61 GPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKI----AGKGVAPGRLH 116
P+ L +A + +GR+LRA+++ E I G AP R H
Sbjct: 84 APA----LTEAIARLHEGRWLRAEEISRKLAIKGMPGALEGARAIQQALGDSGNAPARPH 139
Query: 117 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK 176
A MV AG V++ +AF ++L G P E V + +G LAHP
Sbjct: 140 FADFMVRAGFVKDRAEAFRKWLGAGKLGDVKQHWPTLEDTVATLRASGAWVSLAHPSHYD 199
Query: 177 NPAAIIRKLK----DVGLHGLEV 195
+ RKL G H +EV
Sbjct: 200 FTRSKRRKLVGDFVQAGGHAIEV 222
>UNIPROTKB|P77766 [details] [associations]
symbol:yciV "conserved protein" species:83333 "Escherichia
coli K-12" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 SUPFAM:SSF89550
PIR:E64874 RefSeq:NP_415782.1 RefSeq:YP_489534.1
ProteinModelPortal:P77766 SMR:P77766 IntAct:P77766 PRIDE:P77766
EnsemblBacteria:EBESCT00000001903 EnsemblBacteria:EBESCT00000017316
GeneID:12931131 GeneID:945857 KEGG:ecj:Y75_p1240 KEGG:eco:b1266
PATRIC:32117790 EchoBASE:EB4005 EcoGene:EG14257 eggNOG:COG0613
HOGENOM:HOG000248104 KO:K07053 OMA:QAWEQPQ ProtClustDB:CLSK880131
BioCyc:EcoCyc:G6634-MONOMER BioCyc:ECOL316407:JW1258-MONOMER
Genevestigator:P77766 Uniprot:P77766
Length = 293
Score = 189 (71.6 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 61/186 (32%), Positives = 88/186 (47%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGM--KIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
V LA+TDHDT + I A E R G+ +IPGVEIST++ E+ E +HI+
Sbjct: 37 VGTLAITDHDTTAAIAPAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNID 90
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVAR 119
+ + FLA + R RA+ + E ++A +G A R H AR
Sbjct: 91 I---THPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEGAQRLA-QGGAVTRGHFAR 146
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
+VE G ++ F +YL G Y E A+ +IH +GG AVLAHP A
Sbjct: 147 FLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSA 206
Query: 180 AIIRKL 185
+++L
Sbjct: 207 KWLKRL 212
>UNIPROTKB|Q47YC5 [details] [associations]
symbol:CPS_3521 "PHP domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR016195
Pfam:PF02811 SMART:SM00481 GO:GO:0003677 GO:GO:0006260
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:YP_270195.1 ProteinModelPortal:Q47YC5
STRING:Q47YC5 GeneID:3519891 KEGG:cps:CPS_3521 PATRIC:21469979
BioCyc:CPSY167879:GI48-3549-MONOMER Uniprot:Q47YC5
Length = 301
Score = 188 (71.2 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 65/205 (31%), Positives = 100/205 (48%)
Query: 2 VKVLALTDHDTMSGIPEA---IETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 58
+ VLA+TDHDT++G+ A IE + +K+I G+EIST + +G E +HI+
Sbjct: 51 IDVLAITDHDTVAGLDIAQKHIED-KNIPLKLIDGIEISTAW--QGFE----IHIVGLNI 103
Query: 59 SCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVA 118
K EL++ + ++ R RA M + +AG+G R H A
Sbjct: 104 D---KKNSELKSLIEQQQEAREQRAISMGEKLTKCGFPTIYTDAKAMAGEGSIT-RAHFA 159
Query: 119 RAMVEAGHVENLKQAFARYLYDGGP----AYSTGSEPLAEVAVQLIHRTGGLAVLAHPWA 174
+ + + GHV ++QAF +Y+ G AY + E A+ IH+ GG AV+AHP
Sbjct: 160 KVLHQQGHVSTMQQAFDKYIGKKGSKGQRAYVKPNWCSIEEAIVAIHQAGGSAVMAHPIR 219
Query: 175 LKNPAAIIRKL----KDVGLHGLEV 195
A +R+L +V GLEV
Sbjct: 220 YDLSAKWLRRLIVHFSEVSGDGLEV 244
>TIGR_CMR|CPS_3521 [details] [associations]
symbol:CPS_3521 "PHP domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR016195
Pfam:PF02811 SMART:SM00481 GO:GO:0003677 GO:GO:0006260
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
SUPFAM:SSF89550 eggNOG:COG0613 HOGENOM:HOG000248104 KO:K07053
OMA:TRAHYAR RefSeq:YP_270195.1 ProteinModelPortal:Q47YC5
STRING:Q47YC5 GeneID:3519891 KEGG:cps:CPS_3521 PATRIC:21469979
BioCyc:CPSY167879:GI48-3549-MONOMER Uniprot:Q47YC5
Length = 301
Score = 188 (71.2 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 65/205 (31%), Positives = 100/205 (48%)
Query: 2 VKVLALTDHDTMSGIPEA---IETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 58
+ VLA+TDHDT++G+ A IE + +K+I G+EIST + +G E +HI+
Sbjct: 51 IDVLAITDHDTVAGLDIAQKHIED-KNIPLKLIDGIEISTAW--QGFE----IHIVGLNI 103
Query: 59 SCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVA 118
K EL++ + ++ R RA M + +AG+G R H A
Sbjct: 104 D---KKNSELKSLIEQQQEAREQRAISMGEKLTKCGFPTIYTDAKAMAGEGSIT-RAHFA 159
Query: 119 RAMVEAGHVENLKQAFARYLYDGGP----AYSTGSEPLAEVAVQLIHRTGGLAVLAHPWA 174
+ + + GHV ++QAF +Y+ G AY + E A+ IH+ GG AV+AHP
Sbjct: 160 KVLHQQGHVSTMQQAFDKYIGKKGSKGQRAYVKPNWCSIEEAIVAIHQAGGSAVMAHPIR 219
Query: 175 LKNPAAIIRKL----KDVGLHGLEV 195
A +R+L +V GLEV
Sbjct: 220 YDLSAKWLRRLIVHFSEVSGDGLEV 244
>UNIPROTKB|Q9KSS9 [details] [associations]
symbol:VC_1177 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003141 InterPro:IPR004013
InterPro:IPR016195 Pfam:PF02811 SMART:SM00481 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003887
SUPFAM:SSF89550 KO:K07053 OMA:QAWEQPQ PIR:D82233 RefSeq:NP_230822.1
ProteinModelPortal:Q9KSS9 DNASU:2614610 GeneID:2614610
KEGG:vch:VC1177 PATRIC:20081444 ProtClustDB:CLSK874244
Uniprot:Q9KSS9
Length = 290
Score = 184 (69.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 54/186 (29%), Positives = 90/186 (48%)
Query: 2 VKVLALTDHDTMSGIPEAIE--TARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
+ VLA+TDHDT++ + +A +++ ++++ G+EIST++ + +HI+ +
Sbjct: 30 IDVLAITDHDTVAALADARAYIAQQQYPLQLVNGIEISTVW------QNKDIHIVGL--N 81
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVAR 119
P+ E L +A + R RA+ + E V IA G R H A+
Sbjct: 82 IDPNS-EALGQLIARQQQRRVERAELIAHRLQKATREGVLEEVQHIAD-GAPITRAHFAK 139
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
+V+ G+ N++Q F +YL P Y + AV IH GG AVLAHP A
Sbjct: 140 WLVDNGYATNMQQVFKKYLTRDNPGYVPPNWCSMSEAVSAIHAAGGQAVLAHPGRYDLTA 199
Query: 180 AIIRKL 185
+++L
Sbjct: 200 KWLKRL 205
>TIGR_CMR|VC_1177 [details] [associations]
symbol:VC_1177 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR016195 Pfam:PF02811 SMART:SM00481
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003887 SUPFAM:SSF89550 KO:K07053 OMA:QAWEQPQ PIR:D82233
RefSeq:NP_230822.1 ProteinModelPortal:Q9KSS9 DNASU:2614610
GeneID:2614610 KEGG:vch:VC1177 PATRIC:20081444
ProtClustDB:CLSK874244 Uniprot:Q9KSS9
Length = 290
Score = 184 (69.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 54/186 (29%), Positives = 90/186 (48%)
Query: 2 VKVLALTDHDTMSGIPEAIE--TARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
+ VLA+TDHDT++ + +A +++ ++++ G+EIST++ + +HI+ +
Sbjct: 30 IDVLAITDHDTVAALADARAYIAQQQYPLQLVNGIEISTVW------QNKDIHIVGL--N 81
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVAR 119
P+ E L +A + R RA+ + E V IA G R H A+
Sbjct: 82 IDPNS-EALGQLIARQQQRRVERAELIAHRLQKATREGVLEEVQHIAD-GAPITRAHFAK 139
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
+V+ G+ N++Q F +YL P Y + AV IH GG AVLAHP A
Sbjct: 140 WLVDNGYATNMQQVFKKYLTRDNPGYVPPNWCSMSEAVSAIHAAGGQAVLAHPGRYDLTA 199
Query: 180 AIIRKL 185
+++L
Sbjct: 200 KWLKRL 205
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 332 309 0.00079 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 611 (65 KB)
Total size of DFA: 211 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.46u 0.19s 21.65t Elapsed: 00:00:01
Total cpu time: 21.46u 0.19s 21.65t Elapsed: 00:00:01
Start: Mon May 20 22:35:31 2013 End: Mon May 20 22:35:32 2013