BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020004
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=trpH PE=3 SV=3
Length = 293
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 19/231 (8%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGM--KIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
V LA+TDHDT + IP A E R G+ +IPGVEIST++ E+ E +HI+
Sbjct: 41 VGTLAITDHDTTAAIPAAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNID 94
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVAR 119
+ + +FLA + R R + + +L K +P WE ++A G A R H AR
Sbjct: 95 IA---HPAMRDFLAQQTERRQARGRLIAERLEKAHIPGAWEGALRLANGG-AVTRGHFAR 150
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
+VE G + F +YL G Y E A+ +IH +GG AVLAHP A
Sbjct: 151 FLVECGKAATMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSA 210
Query: 180 AIIRKL----KDVGLHGLEV---YRSDGKLVAYTDLADTYGLLKLGGSDYH 223
+++L D +EV +S + LA + L GSD+H
Sbjct: 211 KWLKRLVAHFADHHGDAMEVAQCQQSPNERTQLATLARQHHLWASLGSDFH 261
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=trpH PE=3 SV=1
Length = 274
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 107/229 (46%), Gaps = 18/229 (7%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
V VLAL DHDT++GI EA A+ G+++I GVEIST + RG +HI+
Sbjct: 32 VNVLALCDHDTIAGIDEAEIAAKEVGIELITGVEISTNWEGRG------IHIVGLNFDKT 85
Query: 62 PSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 121
K L +R+ R + D KL K +P ++ +A V R H AR +
Sbjct: 86 HPKMTALLQSQKALREKRAVEIGD---KLEKAGIPNAYDGAKALADGEVT--RAHYARYL 140
Query: 122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAI 181
V+ G V N QAF RYL G A+ A++ IH GG+A++AHP
Sbjct: 141 VQIGKVSNDGQAFKRYLGQGKSAFVKAEWADIPTAIETIHAAGGIAIIAHPLRYNMTGKW 200
Query: 182 IRKL----KDVGLHGLEVY---RSDGKLVAYTDLADTYGLLKLGGSDYH 223
+RKL K G G+E+ ++ + A + L GSD+H
Sbjct: 201 VRKLIVDFKAWGGDGMEMADCGQTKDQRQMLARWAKEFDLQGSVGSDFH 249
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1
Length = 293
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 108/232 (46%), Gaps = 21/232 (9%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGM--KIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
V LA+TDHDT + I A E R G+ +IPGVEIST++ E+ E +HI+
Sbjct: 37 VGTLAITDHDTTAAIAPAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNID 90
Query: 60 CGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVAR 119
+ + FLA + R RA+ + +L K ++P E ++A +G A R H AR
Sbjct: 91 I---THPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEGAQRLA-QGGAVTRGHFAR 146
Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHP------- 172
+VE G ++ F +YL G Y E A+ +IH +GG AVLAHP
Sbjct: 147 FLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSA 206
Query: 173 -WALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYH 223
W LK A + + + +S + LA + L GSD+H
Sbjct: 207 KW-LKRLVAHFAEHHGDAMEVAQCQQSPNERTQLAALARQHHLWASQGSDFH 257
>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain
Massachusetts / E88) GN=polC PE=3 SV=1
Length = 1427
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 35
K +A+TDH + PEA+E A+++ +KII GVE
Sbjct: 358 KAVAITDHGVVQAYPEAMEAAKKYNIKIIYGVE 390
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=polC PE=3 SV=1
Length = 1401
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 35
K +A+TDH + PEA+E +R +G+K+I G+E
Sbjct: 333 KAVAITDHAVVQAFPEAMEASREYGVKVIYGME 365
>sp|P0C0B7|DPO3_STRPY DNA polymerase III PolC-type OS=Streptococcus pyogenes GN=polC PE=3
SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGP 62
K +A+TDH + P AR+ G+K I G+E + I + S EPV + + CG
Sbjct: 371 KAIAITDHANVQSFPHGYHRARKAGIKAIFGLE-ANIVEDKVPISYEPVDMDLHEDLCGL 429
Query: 63 SKYE 66
S E
Sbjct: 430 SDVE 433
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH PEA +++G+K+I G+E + I
Sbjct: 372 KAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLI 408
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH PEA +++G+K+I G+E + I
Sbjct: 372 KAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLI 408
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH PEA +++G+K+I G+E + I
Sbjct: 372 KAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLI 408
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH PEA +++G+K+I G+E + I
Sbjct: 372 KAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLI 408
>sp|A4XMY1|HIS8_CALS8 Histidinol-phosphate aminotransferase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=hisC
PE=3 SV=1
Length = 358
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 72 LANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 120
LA++R G + ++++I KLN+++ P HVA+IA + H+ +A
Sbjct: 225 LASLRIGYAIASEEIIEKLNRVRPPFNVNHVAQIAAIAALDDQEHIEKA 273
>sp|Q3V4Q5|Y710_ATV Putative transmembrane protein ORF710 OS=Acidianus two-tailed virus
PE=4 SV=1
Length = 710
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 181 IIRKLKDVGLHGLEVYRSD-------GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESEL 233
++ K VG+ G+ + + L+ +TDL TYG+L G Y G L
Sbjct: 401 VVVKFYGVGVTGIHISTNAFGINQQYSALIGFTDLLHTYGVLIQNGEAYSYIAGTKGPAL 460
Query: 234 GSVKLPVLV 242
G+V P++V
Sbjct: 461 GNVTFPMVV 469
>sp|B0RY89|DNAE2_XANCB Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=dnaE2 PE=3 SV=1
Length = 1082
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR 43
LA+TD +++GI +E +R G+++I G E + I C R
Sbjct: 81 LAITDECSLAGIVRGLEASRATGVRLIVGSEFTLIDCTR 119
>sp|Q9KA72|DPO3_BACHD DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=polC PE=3 SV=1
Length = 1433
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH + PEA +++ G+K+I GVE + +
Sbjct: 363 KAIAITDHGVVQAFPEAYGASQKHGIKVIYGVEANLV 399
>sp|Q58982|Y1587_METJA Uncharacterized protein MJ1587 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ1587 PE=4 SV=1
Length = 171
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 38
++V+A+TDH+T+ G E + + FG++++ G EI T
Sbjct: 41 IEVVAITDHNTIRGGVETKKLEKEFGVEVVIGSEIMT 77
>sp|Q6A780|DNAE2_PROAC Error-prone DNA polymerase OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=dnaE2 PE=3 SV=1
Length = 1134
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV--HILAYYSSCGP 62
LALTDHD + G+ E A G+ I G E+S + + +PV H+L + GP
Sbjct: 90 LALTDHDGLYGVVRMAEAAEACGLSTIIGSELSIGVPEPQNGVADPVGSHLLVLAN--GP 147
Query: 63 SKYEELENFLAN 74
Y L L +
Sbjct: 148 EGYRRLAEALTD 159
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH + PEA ++ G+KII GVE + +
Sbjct: 540 KAIAITDHGGLQSFPEAHSAGKKNGVKIIYGVEANLV 576
>sp|Q6NRI0|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A
OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1
Length = 852
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 244 NDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECL 303
N+FL I C A+ IL S D P S +S G +LK + L C L+D L
Sbjct: 385 NNFLHTQVEI-CLAL--ILASPGDSPEHSTISEQNSTGDHVLLKHLF-LKCH--LIDRIL 438
Query: 304 SLWLTNEERQS 314
W NE+RQS
Sbjct: 439 EAWAMNEKRQS 449
>sp|Q03QS9|DPO3_LACBA DNA polymerase III PolC-type OS=Lactobacillus brevis (strain ATCC
367 / JCM 1170) GN=polC PE=3 SV=1
Length = 1445
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
LA+TDH + G P A +A + G+K++ GVE + +
Sbjct: 371 LAITDHADVQGFPAAFNSAAKAGIKMLYGVEANLV 405
>sp|Q038M0|DPO3_LACC3 DNA polymerase III PolC-type OS=Lactobacillus casei (strain ATCC
334) GN=polC PE=3 SV=1
Length = 1444
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH + PEA A + G+K++ GVEI+ +
Sbjct: 364 KAIAVTDHAGLQAYPEAHSAAVKAGLKMLYGVEINLV 400
>sp|A5VJD5|DPO3_LACRD DNA polymerase III PolC-type OS=Lactobacillus reuteri (strain DSM
20016) GN=polC PE=3 SV=1
Length = 1443
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
+A+TDH + PEA A++ G+K++ G+E + +
Sbjct: 372 IAVTDHGNVQAFPEAFSVAQKTGIKMLYGMEANVV 406
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3
SV=1
Length = 1428
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH + G P+A ++ G+K++ GVE + +
Sbjct: 358 KAIAITDHAGVQGFPDAHNAGKKHGVKVLYGVEANLV 394
>sp|Q1WUF9|DPO3_LACS1 DNA polymerase III PolC-type OS=Lactobacillus salivarius (strain
UCC118) GN=polC PE=3 SV=1
Length = 1444
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TDH T+ PEA ++ +KI+ GVE + +
Sbjct: 370 KAIAITDHGTLQAFPEAHAAGQKNNVKILYGVEANIV 406
>sp|P13267|DPO3_BACSU DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168)
GN=polC PE=1 SV=2
Length = 1437
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
+ +ALTDH + P+A A++ G+K+I G+E + +
Sbjct: 365 EAIALTDHAVVQSFPDAYSAAKKHGIKMIYGMEANLV 401
>sp|A7ZDR5|RNY_CAMC1 Ribonuclease Y OS=Campylobacter concisus (strain 13826) GN=rny PE=3
SV=2
Length = 517
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
HG E S++ + D L ARP GA +E+LES+ + + +I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADALSAARP---GARREVLESFLKRVEE--IENIAKSKEG--IK 456
Query: 288 RNYPLNCGKGL 298
+ Y +N G+ +
Sbjct: 457 QAYAINAGREI 467
>sp|A4QNA8|WEE2_XENTR Wee1-like protein kinase 2 OS=Xenopus tropicalis GN=wee2 PE=2 SV=1
Length = 562
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 52 HILAYYSSCGPSKYEELEN-----------FLANIRDGRFLRAKDMILKLNKLKLPLKWE 100
H++ YYS+ + ++N + N ++GRF+ +++ L ++ + LK+
Sbjct: 276 HVVRYYSAWAEDDHMIIQNEYCNGGSLQDLIMENKKEGRFVPEQELKEILLQVSMGLKYI 335
Query: 101 HVAKIAGKGVAPGRLHVARAMVEAGHVEN 129
H + + + P + + R E G E+
Sbjct: 336 HSSGLVHMDIKPSNIFICRKQTEVGQDES 364
>sp|A8FMR4|RNY_CAMJ8 Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 288 RNYPLNCGKGL 298
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|Q9PN86|RNY_CAMJE Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 288 RNYPLNCGKGL 298
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|Q6NRF1|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B
OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1
Length = 850
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 244 NDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECL 303
N+FL I C A+ IL S D P S +S G +LK + L C L+D L
Sbjct: 385 NNFLHTQVEI-CIAL--ILASPGDSPEHSTISEENSAGDHVLLKHLF-LKCH--LIDRIL 438
Query: 304 SLWLTNEERQS 314
W NE+RQS
Sbjct: 439 EAWAMNEKRQS 449
>sp|Q5HTQ5|RNY_CAMJR Ribonuclease Y OS=Campylobacter jejuni (strain RM1221) GN=rny PE=3
SV=1
Length = 517
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 288 RNYPLNCGKGL 298
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A1W0J3|RNY_CAMJJ Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 288 RNYPLNCGKGL 298
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A7H2G9|RNY_CAMJD Ribonuclease Y OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 288 RNYPLNCGKGL 298
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|Q73U92|DNAE2_MYCPA Error-prone DNA polymerase OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=dnaE2 PE=3 SV=1
Length = 1093
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP-VHILAYYSSC 60
++ LALTDHD + G E A ++ + G E+S R + P H+L +
Sbjct: 88 LRALALTDHDGLYGAVRFAEAAAELDVRTVFGAELSLGPSARTEAPDPPGPHLLVL--AR 145
Query: 61 GPSKYEELENFLA 73
GP Y L LA
Sbjct: 146 GPEGYRRLSRQLA 158
>sp|P75080|DPO3_MYCPN DNA polymerase III PolC-type OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=polC PE=1 SV=1
Length = 1443
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
K +A+TD D + P E A+++G+K I G+E + I
Sbjct: 352 KTIAVTDKDNIHIYPTLYEVAKKYGLKAIYGLECNLI 388
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 35
+ LA+TDH+ + P+A A + G+K+I G+E
Sbjct: 366 QALAVTDHNVVQAFPDAHNAAEKHGIKMIYGME 398
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 35
+ LA+TDH+ + P+A A + G+K+I G+E
Sbjct: 370 QALAVTDHNVVQAFPDAHNAAEKHGIKMIYGME 402
>sp|Q49X49|DPO3_STAS1 DNA polymerase III PolC-type OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=polC
PE=3 SV=1
Length = 1438
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 3 KVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 35
K +A+TDH+ + P+A A + G+K+I G+E
Sbjct: 366 KAIAVTDHNVVQAFPDAHSAAEKNGIKMIYGME 398
>sp|Q38W73|DPO3_LACSS DNA polymerase III PolC-type OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=polC PE=3 SV=1
Length = 1446
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39
+A+TDH + P+A ++ G+KI+ GVE++ +
Sbjct: 371 IAVTDHYNLQAFPDAYAAGKKNGVKILYGVEVNLV 405
>sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium tuberculosis GN=dnaE2
PE=2 SV=4
Length = 1098
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP-VHILAYYSSCGPS 63
LALTDHD + G E A ++ + G E+S R + P H+L + GP
Sbjct: 98 LALTDHDGLYGAVRFAEAAAELDVRTVFGAELSLGATARTERPDPPGPHLLVL--ARGPE 155
Query: 64 KYEELENFLA 73
Y L LA
Sbjct: 156 GYRRLSRQLA 165
>sp|Q64YT3|RIBBA_BACFR Riboflavin biosynthesis protein RibBA OS=Bacteroides fragilis
(strain YCH46) GN=ribBA PE=3 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 7 LTDHDTMSGIPEAIETARRFGMKII 31
+ + TM+ +P+ +E ARRFG+KII
Sbjct: 169 INEDGTMARLPQLVEVARRFGLKII 193
>sp|Q5LHT1|RIBBA_BACFN Riboflavin biosynthesis protein RibBA OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=ribBA PE=3 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 7 LTDHDTMSGIPEAIETARRFGMKII 31
+ + TM+ +P+ +E ARRFG+KII
Sbjct: 169 INEDGTMARLPQLVEVARRFGLKII 193
>sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaE2 PE=3 SV=2
Length = 1091
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 5 LALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP-VHILAYYSSCGPS 63
LALTDHD + G E A ++ + G E+S R + P H+L + GP
Sbjct: 91 LALTDHDGLYGAVRFAEAAAELDVRTVFGAELSLGATARTERPDPPGPHLLVL--ARGPE 148
Query: 64 KYEELENFLA 73
Y L LA
Sbjct: 149 GYRRLSRQLA 158
>sp|A0M2K0|RNY_GRAFK Ribonuclease Y OS=Gramella forsetii (strain KT0803) GN=rny PE=3
SV=1
Length = 520
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 228 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 287
H E E+ S+ P++ + D + ARP GA +++L+SY D L I +G G +K
Sbjct: 407 HDEIEMNSLLSPIVQVCDAISGARP---GARRQVLDSYIQRLKD--LEEIA-FGFGG-VK 459
Query: 288 RNYPLNCGKGLVDECLSLWLTNEERQSAEFE 318
+ Y + G+ L S +++E+ + FE
Sbjct: 460 KAYAIQAGRELRVIVESEKVSDEKASNLSFE 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,746,489
Number of Sequences: 539616
Number of extensions: 5697626
Number of successful extensions: 13098
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13055
Number of HSP's gapped (non-prelim): 55
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)