Query 020004
Match_columns 332
No_of_seqs 211 out of 1351
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 7.7E-32 1.7E-36 253.4 18.2 216 2-227 31-251 (258)
2 TIGR00375 conserved hypothetic 99.4 2.8E-12 6E-17 126.4 12.0 152 2-236 32-199 (374)
3 PRK00448 polC DNA polymerase I 99.3 6.3E-13 1.4E-17 148.8 2.2 175 2-218 364-562 (1437)
4 PRK09248 putative hydrolase; V 99.2 2.8E-10 6E-15 106.1 12.4 76 153-235 115-202 (246)
5 smart00481 POLIIIAc DNA polyme 98.6 7.5E-08 1.6E-12 72.0 5.6 38 2-39 29-66 (67)
6 PRK05672 dnaE2 error-prone DNA 98.5 1.3E-06 2.8E-11 96.5 15.4 89 2-107 35-123 (1046)
7 PF02811 PHP: PHP domain; Int 98.5 1.7E-06 3.6E-11 74.8 12.6 52 2-59 30-81 (175)
8 PRK08392 hypothetical protein; 98.4 1.7E-06 3.7E-11 79.2 9.9 74 155-235 108-191 (215)
9 PRK06361 hypothetical protein; 98.4 4.5E-06 9.6E-11 75.9 12.2 61 162-225 110-173 (212)
10 PRK09532 DNA polymerase III su 98.2 5.5E-05 1.2E-09 82.5 17.8 56 2-57 33-89 (874)
11 PRK00912 ribonuclease P protei 98.1 2.8E-05 6.1E-10 72.2 11.5 72 154-226 92-180 (237)
12 TIGR01856 hisJ_fam histidinol 98.1 5.8E-05 1.3E-09 70.8 12.8 71 155-226 146-242 (253)
13 PRK07135 dnaE DNA polymerase I 98.0 6.2E-06 1.3E-10 90.3 6.2 48 2-57 33-80 (973)
14 PRK07328 histidinol-phosphatas 98.0 7.9E-05 1.7E-09 70.4 12.5 70 155-226 145-234 (269)
15 PRK08123 histidinol-phosphatas 97.7 0.0017 3.7E-08 61.5 16.7 71 155-226 157-255 (270)
16 COG1379 PHP family phosphoeste 97.6 0.00043 9.2E-09 66.9 10.4 94 150-247 118-220 (403)
17 TIGR01405 polC_Gram_pos DNA po 97.5 9.9E-05 2.1E-09 82.9 5.8 40 2-41 134-173 (1213)
18 PF13263 PHP_C: PHP-associated 97.3 0.00012 2.7E-09 53.2 2.0 31 202-237 4-34 (56)
19 PRK05673 dnaE DNA polymerase I 97.3 0.00046 9.9E-09 77.3 6.7 57 2-58 32-90 (1135)
20 PRK08609 hypothetical protein; 97.2 0.0039 8.3E-08 65.4 12.9 66 160-226 454-531 (570)
21 TIGR00594 polc DNA-directed DN 97.0 0.0011 2.4E-08 73.7 6.7 56 2-57 31-91 (1022)
22 PRK06826 dnaE DNA polymerase I 96.7 0.0018 4E-08 72.6 5.1 57 2-58 35-95 (1151)
23 PRK07374 dnaE DNA polymerase I 96.6 0.0025 5.3E-08 71.7 5.1 57 2-58 33-92 (1170)
24 COG1387 HIS2 Histidinol phosph 96.5 0.042 9E-07 51.3 12.1 81 152-238 112-206 (237)
25 PRK07279 dnaE DNA polymerase I 96.4 0.0069 1.5E-07 67.3 6.9 51 2-58 32-82 (1034)
26 PRK05898 dnaE DNA polymerase I 96.2 0.0087 1.9E-07 65.9 6.7 49 2-58 32-80 (971)
27 COG0587 DnaE DNA polymerase II 96.1 0.012 2.5E-07 66.0 6.9 57 2-59 34-90 (1139)
28 PRK07945 hypothetical protein; 96.0 0.018 3.9E-07 56.5 7.1 71 154-226 211-297 (335)
29 PRK06740 histidinol-phosphatas 95.9 0.027 5.8E-07 55.2 7.7 74 155-235 206-301 (331)
30 COG2176 PolC DNA polymerase II 95.6 0.012 2.5E-07 65.4 4.0 38 2-39 366-403 (1444)
31 PRK06920 dnaE DNA polymerase I 95.1 0.021 4.6E-07 64.0 4.5 52 2-57 33-84 (1107)
32 PRK05588 histidinol-phosphatas 95.0 0.071 1.5E-06 49.9 6.9 71 155-226 128-223 (255)
33 PRK07329 hypothetical protein; 94.6 0.19 4.2E-06 46.9 8.8 72 154-226 128-222 (246)
34 COG4464 CapC Capsular polysacc 88.3 1.3 2.8E-05 41.2 6.1 76 153-229 118-202 (254)
35 COG0613 Predicted metal-depend 79.4 0.91 2E-05 43.0 1.2 75 150-226 97-179 (258)
36 PF10566 Glyco_hydro_97: Glyco 79.0 5.3 0.00012 38.3 6.3 76 149-228 71-161 (273)
37 PRK09997 hydroxypyruvate isome 68.8 13 0.00028 34.4 6.1 41 178-218 17-58 (258)
38 TIGR03234 OH-pyruv-isom hydrox 67.6 12 0.00025 34.5 5.5 42 178-219 16-58 (254)
39 TIGR00676 fadh2 5,10-methylene 65.7 1.2E+02 0.0027 28.6 12.4 69 150-219 109-191 (272)
40 COG0800 Eda 2-keto-3-deoxy-6-p 65.7 23 0.00051 32.7 6.9 59 154-213 4-63 (211)
41 PF07643 DUF1598: Protein of u 63.7 7.9 0.00017 30.6 3.0 16 111-126 50-65 (84)
42 COG0826 Collagenase and relate 63.4 18 0.0004 35.8 6.2 65 151-220 49-120 (347)
43 PLN02905 beta-amylase 62.1 13 0.00028 39.6 5.1 105 180-300 290-412 (702)
44 PRK09856 fructoselysine 3-epim 56.1 35 0.00076 31.6 6.6 46 178-223 15-70 (275)
45 PRK09989 hypothetical protein; 55.9 29 0.00063 32.1 6.0 40 179-218 18-58 (258)
46 PRK07945 hypothetical protein; 55.7 11 0.00023 37.1 3.1 46 152-199 246-292 (335)
47 PF02679 ComA: (2R)-phospho-3- 54.6 23 0.0005 33.5 5.0 61 153-216 56-129 (244)
48 TIGR03884 sel_bind_Methan sele 54.6 28 0.00061 26.9 4.5 47 2-58 17-63 (74)
49 PLN02705 beta-amylase 54.4 17 0.00037 38.6 4.4 105 180-300 272-394 (681)
50 TIGR03849 arch_ComA phosphosul 53.8 38 0.00082 31.9 6.3 64 153-216 43-116 (237)
51 PRK05718 keto-hydroxyglutarate 53.8 51 0.0011 30.3 7.1 60 153-213 5-65 (212)
52 cd03309 CmuC_like CmuC_like. P 51.2 1.2E+02 0.0025 29.7 9.5 66 151-221 198-265 (321)
53 PLN00197 beta-amylase; Provisi 50.3 29 0.00062 36.5 5.3 57 179-239 130-200 (573)
54 COG0735 Fur Fe2+/Zn2+ uptake r 50.2 1.1E+02 0.0024 26.2 8.2 72 85-173 7-78 (145)
55 COG1902 NemA NADH:flavin oxido 50.0 35 0.00077 34.0 5.8 24 151-174 83-108 (363)
56 PF01726 LexA_DNA_bind: LexA D 49.5 27 0.00059 26.0 3.7 43 86-128 15-57 (65)
57 cd06556 ICL_KPHMT Members of t 48.5 1E+02 0.0023 28.9 8.4 70 153-225 114-206 (240)
58 PLN02803 beta-amylase 47.1 34 0.00074 35.8 5.2 56 180-239 111-180 (548)
59 PRK05473 hypothetical protein; 46.7 46 0.001 26.5 4.8 40 117-159 27-66 (86)
60 TIGR00262 trpA tryptophan synt 46.6 1.3E+02 0.0028 28.3 8.8 69 152-220 103-172 (256)
61 COG0159 TrpA Tryptophan syntha 45.8 1.2E+02 0.0025 29.2 8.3 36 179-214 112-148 (265)
62 PRK09432 metF 5,10-methylenete 45.7 2.9E+02 0.0062 26.7 12.2 67 152-219 131-210 (296)
63 PRK06552 keto-hydroxyglutarate 45.5 76 0.0017 29.2 6.9 57 155-212 5-62 (213)
64 COG2406 Protein distantly rela 44.7 1.9E+02 0.0041 25.5 8.6 65 66-163 49-115 (172)
65 PF06135 DUF965: Bacterial pro 42.8 45 0.00098 26.1 4.1 31 117-149 24-54 (79)
66 CHL00200 trpA tryptophan synth 42.4 1.7E+02 0.0036 27.9 8.8 103 106-217 23-148 (263)
67 TIGR02336 1,3-beta-galactosyl- 41.4 76 0.0017 34.4 6.8 43 152-194 291-333 (719)
68 PF01301 Glyco_hydro_35: Glyco 41.3 42 0.00091 32.7 4.7 48 170-217 16-80 (319)
69 PLN02801 beta-amylase 40.9 50 0.0011 34.5 5.3 64 169-239 33-110 (517)
70 PRK08883 ribulose-phosphate 3- 39.1 2E+02 0.0043 26.5 8.6 70 152-221 69-138 (220)
71 PRK13125 trpA tryptophan synth 38.1 1.7E+02 0.0037 27.1 8.1 66 151-216 88-156 (244)
72 COG1809 (2R)-phospho-3-sulfola 38.1 1.1E+02 0.0025 28.7 6.7 63 153-217 62-136 (258)
73 COG2355 Zn-dependent dipeptida 37.8 88 0.0019 30.7 6.3 21 154-174 205-226 (313)
74 PLN02161 beta-amylase 37.7 56 0.0012 34.1 5.1 49 179-227 120-181 (531)
75 PF00724 Oxidored_FMN: NADH:fl 37.0 66 0.0014 31.4 5.4 22 152-173 81-104 (341)
76 PF10788 DUF2603: Protein of u 36.1 2.9E+02 0.0062 23.9 9.3 70 66-163 59-128 (137)
77 PRK13209 L-xylulose 5-phosphat 35.7 89 0.0019 29.0 5.9 41 178-218 23-75 (283)
78 cd04733 OYE_like_2_FMN Old yel 35.0 99 0.0021 30.1 6.2 44 153-196 84-169 (338)
79 PRK13523 NADPH dehydrogenase N 34.2 98 0.0021 30.4 6.1 24 151-174 81-106 (337)
80 PF01261 AP_endonuc_2: Xylose 32.9 47 0.001 28.7 3.3 36 183-218 2-45 (213)
81 PRK07114 keto-hydroxyglutarate 32.8 1.6E+02 0.0034 27.4 6.9 48 151-199 3-50 (222)
82 cd02930 DCR_FMN 2,4-dienoyl-Co 32.8 1.1E+02 0.0023 30.1 6.1 24 151-174 77-102 (353)
83 PRK13210 putative L-xylulose 5 32.4 94 0.002 28.7 5.4 40 179-218 19-70 (284)
84 PF01081 Aldolase: KDPG and KH 31.9 1.7E+02 0.0037 26.6 6.8 62 157-219 2-65 (196)
85 PRK10605 N-ethylmaleimide redu 31.5 1.1E+02 0.0024 30.4 5.9 22 152-173 80-103 (362)
86 PRK07259 dihydroorotate dehydr 31.2 4.6E+02 0.01 24.8 10.2 47 152-198 144-191 (301)
87 PTZ00170 D-ribulose-5-phosphat 30.8 2.8E+02 0.006 25.5 8.2 40 155-195 54-94 (228)
88 PRK07329 hypothetical protein; 30.1 42 0.00091 31.2 2.6 36 3-38 27-77 (246)
89 TIGR01182 eda Entner-Doudoroff 29.8 1.6E+02 0.0034 27.1 6.2 55 158-213 3-58 (204)
90 PLN02591 tryptophan synthase 29.8 2.7E+02 0.0058 26.3 8.0 103 106-217 10-135 (250)
91 TIGR03551 F420_cofH 7,8-dideme 29.6 91 0.002 30.4 5.0 66 154-219 106-198 (343)
92 PF07308 DUF1456: Protein of u 29.4 1.7E+02 0.0037 22.0 5.4 33 74-106 7-39 (68)
93 PLN03059 beta-galactosidase; P 29.2 88 0.0019 34.7 5.1 48 171-218 52-116 (840)
94 cd04734 OYE_like_3_FMN Old yel 28.5 1.3E+02 0.0029 29.4 5.9 23 152-174 78-102 (343)
95 cd04726 KGPDC_HPS 3-Keto-L-gul 28.3 2.4E+02 0.0051 24.7 7.1 13 183-195 71-83 (202)
96 COG3473 Maleate cis-trans isom 28.2 3.5E+02 0.0075 25.4 8.0 74 154-236 88-163 (238)
97 cd04747 OYE_like_5_FMN Old yel 28.2 1.4E+02 0.0031 29.7 6.1 24 151-174 78-103 (361)
98 TIGR02631 xylA_Arthro xylose i 28.1 1E+02 0.0022 30.9 5.0 41 178-218 34-86 (382)
99 PF01208 URO-D: Uroporphyrinog 28.0 91 0.002 30.0 4.6 67 151-223 220-288 (343)
100 cd04735 OYE_like_4_FMN Old yel 27.8 1.5E+02 0.0032 29.2 6.1 24 151-174 78-103 (353)
101 PRK08309 short chain dehydroge 27.0 40 0.00086 29.9 1.8 26 304-329 146-171 (177)
102 PF07722 Peptidase_C26: Peptid 26.9 1E+02 0.0022 28.1 4.5 46 154-224 27-73 (217)
103 PRK15447 putative protease; Pr 26.4 2.3E+02 0.005 27.2 7.1 64 151-219 48-113 (301)
104 COG4472 Uncharacterized protei 26.2 1.2E+02 0.0027 23.9 4.1 40 117-162 27-66 (88)
105 PF02836 Glyco_hydro_2_C: Glyc 26.2 2.1E+02 0.0046 27.0 6.8 41 181-222 41-81 (298)
106 PF01373 Glyco_hydro_14: Glyco 26.1 69 0.0015 32.5 3.4 57 179-239 19-89 (402)
107 PRK13111 trpA tryptophan synth 25.9 4.2E+02 0.0091 25.0 8.6 59 151-210 104-163 (258)
108 PF09508 Lact_bio_phlase: Lact 25.7 87 0.0019 33.8 4.2 19 152-170 288-306 (716)
109 TIGR01037 pyrD_sub1_fam dihydr 25.4 5.8E+02 0.013 24.1 9.9 45 153-197 145-190 (300)
110 TIGR00262 trpA tryptophan synt 25.0 3.2E+02 0.0069 25.7 7.6 37 179-215 105-142 (256)
111 PRK08645 bifunctional homocyst 24.5 8.7E+02 0.019 25.8 12.1 44 151-195 435-497 (612)
112 cd07932 arginine_kinase_like P 24.2 98 0.0021 30.9 4.1 82 232-317 56-144 (350)
113 PF09339 HTH_IclR: IclR helix- 23.9 60 0.0013 22.5 1.9 47 81-128 3-49 (52)
114 KOG3040 Predicted sugar phosph 23.7 2.6E+02 0.0056 26.3 6.4 38 81-126 51-88 (262)
115 KOG4175 Tryptophan synthase al 23.3 3.9E+02 0.0086 25.0 7.4 36 179-214 113-149 (268)
116 PRK07094 biotin synthase; Prov 23.1 1.8E+02 0.0038 27.9 5.6 39 153-193 105-143 (323)
117 TIGR00506 ribB 3,4-dihydroxy-2 23.0 2.5E+02 0.0054 25.7 6.2 29 193-221 163-194 (199)
118 PF02061 Lambda_CIII: Lambda P 22.6 2E+02 0.0043 19.9 4.0 28 69-96 18-45 (45)
119 TIGR00985 3a0801s04tom mitocho 22.2 4.8E+02 0.01 22.8 7.5 16 159-174 111-126 (148)
120 COG0399 WecE Predicted pyridox 22.1 4.4E+02 0.0095 26.5 8.2 86 138-225 71-162 (374)
121 PRK00014 ribB 3,4-dihydroxy-2- 22.0 2.7E+02 0.0059 26.1 6.3 56 166-221 143-209 (230)
122 PRK08091 ribulose-phosphate 3- 22.0 5.6E+02 0.012 23.9 8.4 69 152-220 79-149 (228)
123 PF07862 Nif11: Nitrogen fixat 22.0 2.3E+02 0.0049 19.4 4.6 18 85-102 31-48 (49)
124 PRK03892 ribonuclease P protei 21.8 3.3E+02 0.0072 25.3 6.7 78 143-224 84-177 (216)
125 TIGR01463 mtaA_cmuA methyltran 21.4 3.4E+02 0.0073 26.1 7.3 45 151-198 220-264 (340)
126 PRK00115 hemE uroporphyrinogen 21.3 3.7E+02 0.0081 26.1 7.5 64 151-221 224-290 (346)
127 cd02933 OYE_like_FMN Old yello 21.3 2.2E+02 0.0048 27.9 5.9 22 152-173 78-101 (338)
128 cd00717 URO-D Uroporphyrinogen 21.2 3.5E+02 0.0076 26.0 7.3 45 151-198 215-260 (335)
129 TIGR01304 IMP_DH_rel_2 IMP deh 21.2 5.8E+02 0.013 25.5 8.9 64 153-218 121-193 (369)
130 PRK08508 biotin synthase; Prov 21.1 3.4E+02 0.0074 25.7 7.0 39 154-194 78-117 (279)
131 cd02931 ER_like_FMN Enoate red 21.0 2.3E+02 0.0049 28.3 6.0 21 152-172 84-106 (382)
132 cd02932 OYE_YqiM_FMN Old yello 20.9 2.3E+02 0.0051 27.4 6.0 23 152-174 78-102 (336)
133 COG1038 PycA Pyruvate carboxyl 20.9 1.6E+02 0.0034 32.9 5.0 68 149-221 65-141 (1149)
134 PRK01792 ribB 3,4-dihydroxy-2- 20.8 2.9E+02 0.0063 25.6 6.2 29 193-221 173-204 (214)
135 PRK06740 histidinol-phosphatas 20.7 1.1E+02 0.0023 30.0 3.6 12 27-38 139-150 (331)
136 PF06844 DUF1244: Protein of u 20.7 32 0.00069 26.1 -0.1 13 297-309 11-23 (68)
137 PRK08745 ribulose-phosphate 3- 20.6 6.2E+02 0.014 23.3 8.5 69 152-220 73-141 (223)
138 PRK06256 biotin synthase; Vali 20.3 3.4E+02 0.0073 26.1 7.0 40 153-194 128-167 (336)
139 cd03465 URO-D_like The URO-D _ 20.1 3.2E+02 0.0069 25.9 6.7 66 151-223 208-275 (330)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=99.98 E-value=7.7e-32 Score=253.36 Aligned_cols=216 Identities=37% Similarity=0.495 Sum_probs=196.4
Q ss_pred ccEEEEecCCCcCCHHHHH-HHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRF 80 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~-~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~ 80 (332)
++++|||||||+.|+.++. ..+..+|+.+|||+||||.|. +..+|+++|+++. ....+.+.+.+.+..|.
T Consensus 31 ~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~ih~~~~~~~~---~~~~~~~~~~~~~~~~~ 101 (258)
T COG0613 31 VDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG------GHIIHILGLGIDI---TDEPLVEGLARQQLYRE 101 (258)
T ss_pred CCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC------CeEEEEEeecccc---cchhhhhhhhhccccHH
Confidence 6899999999999999997 667788999999999999996 7899999999985 34568899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHH
Q 020004 81 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLI 160 (332)
Q Consensus 81 ~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I 160 (332)
+|++++.+++...+++-.++.+...++.+ .+.|+|+++.+|+.+++.+..+.|++|+..++++|++..+.+.++.|..+
T Consensus 102 ~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~ 180 (258)
T COG0613 102 ERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEAHVGAI 180 (258)
T ss_pred HHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHHHhccCcccCcccccCHHHHHHHH
Confidence 99999999999999999999998877654 46799999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEeCCCCCCCh-HHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCCCCCCCC
Q 020004 161 HRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGG 227 (332)
Q Consensus 161 ~~aGGiaVlAHP~~~~~~-~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD~Hg~~~ 227 (332)
+.+||++|+|||.++..+ ..++..+.+.|.||+|++++.. +...+..+++.++++.|+|||||..+.
T Consensus 181 ~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~~ 251 (258)
T COG0613 181 HGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPGD 251 (258)
T ss_pred hhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCCc
Confidence 999999999999988654 5788888999999999998764 456788899999999999999998864
No 2
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.38 E-value=2.8e-12 Score=126.35 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=100.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHH----HhcCCe------EEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENF 71 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a----~~~GI~------vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~ 71 (332)
|++|++|||++-. ......+ .+.|+. ++||+|+.+. ++||+|+|+++. +...+|
T Consensus 32 ldvIg~~D~~~p~--~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~~---------~~VH~L~~fp~l-----~~a~~f 95 (374)
T TIGR00375 32 LELLGIIDCHSPL--EEGISSGKRELDGGGIRYRSELSIYDEACVDES---------GPIHVLLFMPTL-----ADMKQF 95 (374)
T ss_pred CEEEEEecCCCch--HHHHhhcccccCCCCeeeccceeeccccccccC---------CCceEEEECCCH-----HHHHHH
Confidence 7899999999994 3333333 456777 9999999764 689999999753 333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCC
Q 020004 72 LANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEP 151 (332)
Q Consensus 72 l~~~r~~R~~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~ 151 (332)
-+.+.+ +|. ..+|| . ...+
T Consensus 96 ~~~l~~-----------~l~-------------------~~~rp----------------------------~---q~~~ 114 (374)
T TIGR00375 96 SNWLSA-----------RLK-------------------NIGRS----------------------------S---QRIY 114 (374)
T ss_pred HHHHHh-----------hCC-------------------CCCCC----------------------------C---eeee
Confidence 221110 000 11222 0 0114
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHH------HHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCCCCCC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRK------LKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGR 225 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~------l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~Hg~ 225 (332)
+..+.++.+++.||++|+||+|+.... ++.. .....-|+||+.++... .++.+++...++..+++||+|.+
T Consensus 115 ~~~~~~~~v~~~gGi~iPAHiftP~~S--l~g~~~~~~~~~g~~p~avElglS~d~-~ma~~~s~L~~~~~ISnSDAHsl 191 (374)
T TIGR00375 115 ETGLNLEKVQDYGGLFGPAHIFTPWTS--LYKSGDSSSDCYVFDPDFVELGLSADT-DMADHISELNDYPFLTNSDAHSL 191 (374)
T ss_pred cHHHHHHHhhcCCeEEEeCCCCCCccc--ccccccchhhhhcCCCceEEEeccCCH-HHHHHhHHhcCCCeEeecCCCCC
Confidence 778899999999999999999975431 1211 11111299999998764 45558899999999999999997
Q ss_pred CCCCCcccccc
Q 020004 226 GGHGESELGSV 236 (332)
Q Consensus 226 ~~~~~~~lG~~ 236 (332)
.. ..||+-
T Consensus 192 ~p---~~IGre 199 (374)
T TIGR00375 192 GP---HRLGRE 199 (374)
T ss_pred Ch---hHhCCc
Confidence 51 147763
No 3
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.30 E-value=6.3e-13 Score=148.75 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=122.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFL 81 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~~ 81 (332)
+++|||||||++.|++++.+++++.||++|+|||+++.+. .+|| +|+++. ..|.
T Consensus 364 ~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~~--------~~~i-v~~~~~-----~~L~------------ 417 (1437)
T PRK00448 364 HKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVDD--------GVPI-VYNEVD-----RDLK------------ 417 (1437)
T ss_pred CCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEecc--------ceeE-EecCCc-----hhhc------------
Confidence 6899999999999999999999999999999999999753 3555 598752 2221
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCc-------------ccCC
Q 020004 82 RAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA-------------YSTG 148 (332)
Q Consensus 82 r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~-------------yv~~ 148 (332)
+.+.++-.++.-|++..++++.+++ .++++.|.+. +.|..|+.++.+. ++.
T Consensus 418 ~~~~VVfDLETTGL~~~~deIIEIg------------AV~V~~G~ii---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~- 481 (1437)
T PRK00448 418 DATYVVFDVETTGLSAVYDEIIEIG------------AVKIKNGEII---DKFEFFIKPGHPLSAFTTELTGITDDMVK- 481 (1437)
T ss_pred cCcEEEEEhhhcCCCCchhhhheee------------eEEEeCCeEe---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-
Confidence 1234555667778888888876653 2334555442 4566677666532 333
Q ss_pred CCCCHHHHHHHHHH-cCCeEEEeCCCCCCCh--HHHHHH-----HHHcCccEEEEeCCcC---cHHHHHHHHHHcCCcee
Q 020004 149 SEPLAEVAVQLIHR-TGGLAVLAHPWALKNP--AAIIRK-----LKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKL 217 (332)
Q Consensus 149 ~~~~~eeaI~~I~~-aGGiaVlAHP~~~~~~--~~li~~-----l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~t 217 (332)
..+++++|++.+++ .||.+++|||..++.. ...+++ +...++|++|+++... ....+.++|+.+|+..+
T Consensus 482 ~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~ 561 (1437)
T PRK00448 482 DAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVELE 561 (1437)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCCCC
Confidence 56899999999999 7999999999865431 111111 2234678888875432 44578889999999765
Q ss_pred e
Q 020004 218 G 218 (332)
Q Consensus 218 g 218 (332)
+
T Consensus 562 ~ 562 (1437)
T PRK00448 562 H 562 (1437)
T ss_pred C
Confidence 3
No 4
>PRK09248 putative hydrolase; Validated
Probab=99.17 E-value=2.8e-10 Score=106.06 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCC---hHHHHHHHHHcCccEEEEeCCcC---------cHHHHHHHHHHcCCceeecC
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKLGGS 220 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~---~~~li~~l~~~gldGIEv~~~~~---------~~~~~~~lA~~~~L~~tgGS 220 (332)
.+++++.+ ++|++.|+|||++... ...+++.+.+.|+ +||+.++.. ....+.+++.++|+++|.||
T Consensus 115 ~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~gS 192 (246)
T PRK09248 115 TQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALGS 192 (246)
T ss_pred HHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEeC
Confidence 46778888 8899999999987542 2456677888888 999987532 35678899999999999999
Q ss_pred CCCCCCCCCCccccc
Q 020004 221 DYHGRGGHGESELGS 235 (332)
Q Consensus 221 D~Hg~~~~~~~~lG~ 235 (332)
|+|.+. .+|.
T Consensus 193 DAH~~~-----~vg~ 202 (246)
T PRK09248 193 DAHIAF-----DIGN 202 (246)
T ss_pred CCCChh-----hhcc
Confidence 999985 4774
No 5
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=98.61 E-value=7.5e-08 Score=72.04 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=35.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeee
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~ 39 (332)
+++++|||||++.|+.++.+.+++.||++|||+|+++.
T Consensus 29 ~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~~ 66 (67)
T smart00481 29 LKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIV 66 (67)
T ss_pred CCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEec
Confidence 68999999999999999999999999999999999863
No 6
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=98.55 E-value=1.3e-06 Score=96.55 Aligned_cols=89 Identities=25% Similarity=0.339 Sum_probs=69.0
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFL 81 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~~ 81 (332)
++++||||||++.|+.++.+++++.||++|+|+|+++.+.. .+..+|+++|..+ ...++++++-+...+.+
T Consensus 35 ~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~~hllllAkn-----~~Gy~nL~kL~S~a~~~ 105 (1046)
T PRK05672 35 LRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGGPHLLVLARD-----REGYGRLSRLITRARLR 105 (1046)
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCCceEEEEEcC-----hHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999997521 1356899999865 24666776666655543
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhC
Q 020004 82 RAKDMILKLNKLKLPLKWEHVAKIAG 107 (332)
Q Consensus 82 r~~~iv~~L~~~G~~i~~e~v~~~ag 107 (332)
+. ..+..++++.+.++..
T Consensus 106 ~~--------~~~p~i~~e~L~~~~~ 123 (1046)
T PRK05672 106 AG--------KGEYRLDLDDLAEPAG 123 (1046)
T ss_pred CC--------CCCccccHHHHHhhcC
Confidence 32 3456789999887643
No 7
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=98.53 E-value=1.7e-06 Score=74.82 Aligned_cols=52 Identities=31% Similarity=0.609 Sum_probs=43.7
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccC
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSS 59 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id 59 (332)
++.|||||||++.++.+..+.+++.||++++|+|+..... ....|++-+...
T Consensus 30 l~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~~------~~~~~~~i~~~~ 81 (175)
T PF02811_consen 30 LDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFER------NDPFDYIIGSVH 81 (175)
T ss_dssp ESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHHH------TTTEEEEEEEGS
T ss_pred CCEEEEcCCcccccchHHHHHHHhcCCceEEeEeeccccc------cchhHHHHHHhh
Confidence 6899999999999999999999999999999999943322 457888877653
No 8
>PRK08392 hypothetical protein; Provisional
Probab=98.40 E-value=1.7e-06 Score=79.21 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCC---------hHHHHHHHHHcCccEEEEeCCc-CcHHHHHHHHHHcCCceeecCCCCC
Q 020004 155 VAVQLIHRTGGLAVLAHPWALKN---------PAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLGGSDYHG 224 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~~---------~~~li~~l~~~gldGIEv~~~~-~~~~~~~~lA~~~~L~~tgGSD~Hg 224 (332)
+.++++ +.+.+-|++||..... ...+++.+++.| -++|+.... .....+.++|+++|..+|-|||+|.
T Consensus 108 ~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~ 185 (215)
T PRK08392 108 LVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR 185 (215)
T ss_pred HHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 344444 4589999999974211 123344455556 689997532 2345678899999999999999999
Q ss_pred CCCCCCccccc
Q 020004 225 RGGHGESELGS 235 (332)
Q Consensus 225 ~~~~~~~~lG~ 235 (332)
+. .+|.
T Consensus 186 ~~-----~vg~ 191 (215)
T PRK08392 186 PE-----DVGN 191 (215)
T ss_pred hH-----HCCc
Confidence 86 4774
No 9
>PRK06361 hypothetical protein; Provisional
Probab=98.38 E-value=4.5e-06 Score=75.90 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=45.5
Q ss_pred HcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCc---CcHHHHHHHHHHcCCceeecCCCCCC
Q 020004 162 RTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGR 225 (332)
Q Consensus 162 ~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~---~~~~~~~~lA~~~~L~~tgGSD~Hg~ 225 (332)
+.|-+-|+|||.... ..+++.+++ .--++|+..+. .....+.++++++|++++.|||+|.+
T Consensus 110 ~~~~~dvlaHpd~~~--~~~~~~~~~-~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~ 173 (212)
T PRK06361 110 ECEDVDILAHPGLIT--EEEAELAAE-NGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAP 173 (212)
T ss_pred hCCCCcEecCcchhh--HHHHHHHHH-cCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCH
Confidence 578899999997543 245555544 45789997632 23467889999999999999999954
No 10
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=98.21 E-value=5.5e-05 Score=82.53 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=43.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCC-CCCCCeEEEEec
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-ESEEPVHILAYY 57 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~-~~g~~vHILgY~ 57 (332)
+++|||||||++.|+.++.+++++.||++|+|+|+++....... ......|++-|-
T Consensus 33 ~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~~~~lvLLA 89 (874)
T PRK09532 33 MPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRRKYHQVVLA 89 (874)
T ss_pred CCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccccceeEEEe
Confidence 68999999999999999999999999999999999986421100 012246887774
No 11
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=98.12 E-value=2.8e-05 Score=72.16 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCC----hHHHHHHHHHcCccEEEEeCCc-----C--------cHHHHHHHHHHcCCce
Q 020004 154 EVAVQLIHRTGGLAVLAHPWALKN----PAAIIRKLKDVGLHGLEVYRSD-----G--------KLVAYTDLADTYGLLK 216 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~~~----~~~li~~l~~~gldGIEv~~~~-----~--------~~~~~~~lA~~~~L~~ 216 (332)
+++.+.+.+.+++-|++||+..+. ...+++..++.| -++|+..+. . ....+.++|+++|.++
T Consensus 92 ~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~pi 170 (237)
T PRK00912 92 EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPL 170 (237)
T ss_pred HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCE
Confidence 344456777899999999986321 234445555545 477876542 1 1135778999999999
Q ss_pred eecCCCCCCC
Q 020004 217 LGGSDYHGRG 226 (332)
Q Consensus 217 tgGSD~Hg~~ 226 (332)
+.|||+|.+.
T Consensus 171 iisSdAh~~~ 180 (237)
T PRK00912 171 VLTSGAMSCY 180 (237)
T ss_pred EEeCCCCccc
Confidence 9999999975
No 12
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=98.07 E-value=5.8e-05 Score=70.76 Aligned_cols=71 Identities=24% Similarity=0.220 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCeEEEeCCCCCC----C--------------hHHHHHHHHHcCccEEEEeCCc--------CcHHHHHHH
Q 020004 155 VAVQLIHRTGGLAVLAHPWALK----N--------------PAAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDL 208 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~----~--------------~~~li~~l~~~gldGIEv~~~~--------~~~~~~~~l 208 (332)
.+.+.+++..-.-|+|||...+ . ...+++.+++.| -+||+..+. .....+.++
T Consensus 146 ~~~~~i~~~~~~dvlgH~Dli~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~yP~~~il~~ 224 (253)
T TIGR01856 146 SVYDSIQALFKPLVIGHIDLVQKFGPLFTDVSSFSDEVYELLQRILKLVASQG-KALEFNTSGLRKPLEEAYPSKELLNL 224 (253)
T ss_pred HHHHHHHcCCCCCCcccHhHHHHhCccccccccccHHHHHHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCCCCHHHHHH
Confidence 4455666643357999996321 1 123444455555 589998642 134578899
Q ss_pred HHHcCCceeecCCCCCCC
Q 020004 209 ADTYGLLKLGGSDYHGRG 226 (332)
Q Consensus 209 A~~~~L~~tgGSD~Hg~~ 226 (332)
++++|..+|-|||+|.+.
T Consensus 225 ~~~~g~~itlgSDAH~~~ 242 (253)
T TIGR01856 225 AKELGIPLVLGSDAHGPG 242 (253)
T ss_pred HHHcCCCEEecCCCCCHH
Confidence 999999999999999985
No 13
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=98.04 E-value=6.2e-06 Score=90.32 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=43.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEec
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYY 57 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~ 57 (332)
++++|||||||+.|+.++.++|++.||++|+|+|+++.+ ..+|+||+.
T Consensus 33 ~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~~--------~~l~LLAkn 80 (973)
T PRK07135 33 LKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVEN--------FRFILLAKN 80 (973)
T ss_pred CCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEecC--------cEEEEEECC
Confidence 689999999999999999999999999999999999863 478999885
No 14
>PRK07328 histidinol-phosphatase; Provisional
Probab=98.01 E-value=7.9e-05 Score=70.43 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCeEEEeCCCCCC-----C---h----HHHHHHHHHcCccEEEEeCCc--------CcHHHHHHHHHHcCC
Q 020004 155 VAVQLIHRTGGLAVLAHPWALK-----N---P----AAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDLADTYGL 214 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~-----~---~----~~li~~l~~~gldGIEv~~~~--------~~~~~~~~lA~~~~L 214 (332)
.+++.+. .|.+-|+|||...+ . . .++++.+++.| -++|+..+. .....+.++++++|.
T Consensus 145 ~~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~ 222 (269)
T PRK07328 145 LVEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGI 222 (269)
T ss_pred HHHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCC
Confidence 4455554 58899999997422 1 1 23445555555 589998642 134578899999999
Q ss_pred ceeecCCCCCCC
Q 020004 215 LKLGGSDYHGRG 226 (332)
Q Consensus 215 ~~tgGSD~Hg~~ 226 (332)
.+|-|||+|.+.
T Consensus 223 ~itigSDAH~~~ 234 (269)
T PRK07328 223 PVVLGSDAHRPE 234 (269)
T ss_pred CEEEeCCCCCHH
Confidence 999999999985
No 15
>PRK08123 histidinol-phosphatase; Reviewed
Probab=97.75 E-value=0.0017 Score=61.48 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHcCC---eEEEeCCCC---C--CCh-----------HHHHHHHHHcCccEEEEeCCc---------CcHHHHH
Q 020004 155 VAVQLIHRTGG---LAVLAHPWA---L--KNP-----------AAIIRKLKDVGLHGLEVYRSD---------GKLVAYT 206 (332)
Q Consensus 155 eaI~~I~~aGG---iaVlAHP~~---~--~~~-----------~~li~~l~~~gldGIEv~~~~---------~~~~~~~ 206 (332)
...+.+.+..+ +-|++||.. + ..+ ..+++.+++.| -++|+..+. .+...+.
T Consensus 157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINtsgl~~~~~~~~yP~~~il 235 (270)
T PRK08123 157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRG-YELDFNTAGLRKPYCGEPYPPGEII 235 (270)
T ss_pred HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCcHHHH
Confidence 44555554322 569999962 1 111 23445555555 589997642 1346788
Q ss_pred HHHHHcCCceeecCCCCCCC
Q 020004 207 DLADTYGLLKLGGSDYHGRG 226 (332)
Q Consensus 207 ~lA~~~~L~~tgGSD~Hg~~ 226 (332)
++++++|.++|-|||+|.+.
T Consensus 236 ~~~~e~g~~itlgSDAH~~~ 255 (270)
T PRK08123 236 TLAKKLGIPLVYGSDAHSAA 255 (270)
T ss_pred HHHHHcCCCEEEeCCCCCHH
Confidence 99999999999999999985
No 16
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=97.62 E-value=0.00043 Score=66.94 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHcCCeEEEeCCCCCC-----ChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCCCCC
Q 020004 150 EPLAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHG 224 (332)
Q Consensus 150 ~~~~eeaI~~I~~aGGiaVlAHP~~~~-----~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~Hg 224 (332)
+++-.+..+.++..||+..+||-|..+ ..+++-+-+-.+-+|+||.-=+. +.+++..+.+-+.++....||+|.
T Consensus 118 ~~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvELGLSA-DtdmAD~I~el~~~pFLtNSDAHS 196 (403)
T COG1379 118 YLTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVELGLSA-DTDMADMIEELHRLPFLTNSDAHS 196 (403)
T ss_pred eccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHhcccc-CchHHHHHHHhccCCcccccccCC
Confidence 367789999999999999999987543 22233333333447888875432 334566667778999999999999
Q ss_pred CCCCCCccccc----ccCChHHHHHHh
Q 020004 225 RGGHGESELGS----VKLPVLVLNDFL 247 (332)
Q Consensus 225 ~~~~~~~~lG~----~~~p~~~~~~~~ 247 (332)
+.. ..+|+ +.+++..|+.|+
T Consensus 197 p~p---hrLgREfn~f~v~~~sF~~~r 220 (403)
T COG1379 197 PYP---HRLGREFNQFEVEEISFEELR 220 (403)
T ss_pred Cch---hhhhhhhheeecccCCHHHHH
Confidence 642 24664 456666666655
No 17
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=97.54 E-value=9.9e-05 Score=82.86 Aligned_cols=40 Identities=38% Similarity=0.560 Sum_probs=37.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeec
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 41 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~ 41 (332)
+++|||||||++.|++++.+++++.||++|+|+|+++...
T Consensus 134 l~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d 173 (1213)
T TIGR01405 134 HKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDD 173 (1213)
T ss_pred CCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeecc
Confidence 6899999999999999999999999999999999999654
No 18
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=97.32 E-value=0.00012 Score=53.19 Aligned_cols=31 Identities=39% Similarity=0.413 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCceeecCCCCCCCCCCCccccccc
Q 020004 202 LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK 237 (332)
Q Consensus 202 ~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~~~ 237 (332)
+.++.++|+++++++++|||+|.+. ++|...
T Consensus 4 N~~A~~~A~~~~lp~~~gSDAH~~~-----~vG~~~ 34 (56)
T PF13263_consen 4 NRRAAELAEKYGLPFTGGSDAHFLE-----EVGRGY 34 (56)
T ss_dssp --HHHHHHHHTT--EEEE--BSSGG-----GTTTTH
T ss_pred HHHHHHHHHHcCCCeEeEEcccChh-----hcCCEe
Confidence 5678899999999999999999875 688754
No 19
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=97.26 E-value=0.00046 Score=77.33 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=45.3
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccC-C-CCCCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~-~-~~~g~~vHILgY~i 58 (332)
++++||||||++.|+.++.+.|++.||++|.|+|+++.+..+ . ...+...|++-|--
T Consensus 32 ~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~~~~l~llAk 90 (1135)
T PRK05673 32 MPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGAYTHLTLLAK 90 (1135)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccCCCceEEEec
Confidence 679999999999999999999999999999999999976421 0 00123468888853
No 20
>PRK08609 hypothetical protein; Provisional
Probab=97.24 E-value=0.0039 Score=65.38 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=47.0
Q ss_pred HHHcCCeEEEeCCCC-----CCC----hHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCCCCCCC
Q 020004 160 IHRTGGLAVLAHPWA-----LKN----PAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRG 226 (332)
Q Consensus 160 I~~aGGiaVlAHP~~-----~~~----~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD~Hg~~ 226 (332)
+-+.|.+.|+|||.. +.. .+.+++.+++.| -.+|+..+.. ....+.+.+.++|+.++-|||+|.+.
T Consensus 454 a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~ 531 (570)
T PRK08609 454 ACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTE 531 (570)
T ss_pred HhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChh
Confidence 334688999999983 111 133444445555 5899976532 35677889999999999999999986
No 21
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.0011 Score=73.68 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=44.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccC-C----CCCCCCeEEEEec
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G----SESEEPVHILAYY 57 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~-~----~~~g~~vHILgY~ 57 (332)
++++||||||++.|+.++.+++++.||++|.|+|+++....+ + ...+...|++-|-
T Consensus 31 ~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~~~~~~~l~llA 91 (1022)
T TIGR00594 31 MPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISKGKEAYHLILLA 91 (1022)
T ss_pred CCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccccCCCccEEEEe
Confidence 679999999999999999999999999999999999875321 0 0012235888885
No 22
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=96.69 E-value=0.0018 Score=72.61 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=44.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCC-C---CCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-E---SEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~-~---~g~~vHILgY~i 58 (332)
++++||||||++.|+.++.+.+++.||++|+|+|+.+....+.. . .....|++-|--
T Consensus 35 ~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~~~~~~l~lLAk 95 (1151)
T PRK06826 35 MDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPDIDNETYHLVLLAK 95 (1151)
T ss_pred CCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCccccccccccCCCceEEEEEc
Confidence 67899999999999999999999999999999999986421100 0 012358888853
No 23
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=96.58 E-value=0.0025 Score=71.70 Aligned_cols=57 Identities=28% Similarity=0.369 Sum_probs=43.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCC---CCCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS---ESEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~---~~g~~vHILgY~i 58 (332)
++++||||||++.|+.++.+.+++.||+.|.|+|+......+.. ......|++-|--
T Consensus 33 ~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~~~~~~l~LLAk 92 (1170)
T PRK07374 33 MPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKKEKRYHLVVLAK 92 (1170)
T ss_pred CCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccccccceEEEEEe
Confidence 67999999999999999999999999999999999875321000 0112358888753
No 24
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=96.50 E-value=0.042 Score=51.33 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCC------C-----hHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCcee
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALK------N-----PAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKL 217 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~------~-----~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~t 217 (332)
...+.+...-+.+-+-|+|||+... . ...+++.+. .---++|+..+.. .+....++|+++|+.++
T Consensus 112 ~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~aleins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 112 DYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAE-KNGKALEINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred HHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHH-HhCcEEeecCCcCccCchHHHHHHHHHhCCeEE
Confidence 3456666677778899999998531 1 123333333 3446888876532 45678899999999999
Q ss_pred ecCCCCCCCCCCCcccccccC
Q 020004 218 GGSDYHGRGGHGESELGSVKL 238 (332)
Q Consensus 218 gGSD~Hg~~~~~~~~lG~~~~ 238 (332)
=|||+|.+. .+|.+..
T Consensus 191 i~tDaH~~~-----~lg~~~~ 206 (237)
T COG1387 191 IGTDAHRPG-----DLGDMYF 206 (237)
T ss_pred eecCcCChh-----hcccchH
Confidence 999999986 5777653
No 25
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=96.38 E-value=0.0069 Score=67.27 Aligned_cols=51 Identities=24% Similarity=0.366 Sum_probs=44.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~i 58 (332)
+.++|||||+++-|..++..+|++.||+-|-|+|+..... +...|++-|--
T Consensus 32 ~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~------~~~~~lvlLAk 82 (1034)
T PRK07279 32 YQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFVE------EQEVTLRLIAK 82 (1034)
T ss_pred CCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEecC------CCcceEEEEEC
Confidence 5789999999999999999999999999999999987642 23579988854
No 26
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=96.23 E-value=0.0087 Score=65.93 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=42.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~i 58 (332)
+.++|||||+++-|..+..++|++.||+-|-|+|+.... ...|++-|--
T Consensus 32 ~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~~~lvLLAk 80 (971)
T PRK05898 32 QPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TNATLVLYAK 80 (971)
T ss_pred CCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC--------CCceEEEEeC
Confidence 578999999999999999999999999999999998742 2468888853
No 27
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.012 Score=66.01 Aligned_cols=57 Identities=30% Similarity=0.353 Sum_probs=46.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccC
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSS 59 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id 59 (332)
+.++|||||+++.|.-++...|++.||+.|.|+|+........ ......|++.|--+
T Consensus 34 ~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~~~~l~llAkn 90 (1139)
T COG0587 34 MPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRERPHLLLLAKN 90 (1139)
T ss_pred CCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccCCccEEEEeCC
Confidence 5789999999999999999999999999999999877643211 12356899999543
No 28
>PRK07945 hypothetical protein; Provisional
Probab=96.01 E-value=0.018 Score=56.46 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCeEEEeCCCCC-------C------ChHHHHHHHHHcCccEEEEeCCc---CcHHHHHHHHHHcCCcee
Q 020004 154 EVAVQLIHRTGGLAVLAHPWAL-------K------NPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~-------~------~~~~li~~l~~~gldGIEv~~~~---~~~~~~~~lA~~~~L~~t 217 (332)
+..++.+. .+.+-|++||... . ...++++.+++.| -++|+..+. .....+.++|+++|..+|
T Consensus 211 ~~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 211 RRMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HHHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 44555555 5779999999521 0 1134555566655 589998653 245678899999999999
Q ss_pred ecCCCCCCC
Q 020004 218 GGSDYHGRG 226 (332)
Q Consensus 218 gGSD~Hg~~ 226 (332)
-|||+|.+.
T Consensus 289 igSDAH~p~ 297 (335)
T PRK07945 289 IDTDAHAPG 297 (335)
T ss_pred ecCCCCChh
Confidence 999999986
No 29
>PRK06740 histidinol-phosphatase; Validated
Probab=95.88 E-value=0.027 Score=55.24 Aligned_cols=74 Identities=19% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCeEEEeCCCCCC-----C--------hHHHHHHHHHcCccEEEEeCCc---------CcHHHHHHHHHHc
Q 020004 155 VAVQLIHRTGGLAVLAHPWALK-----N--------PAAIIRKLKDVGLHGLEVYRSD---------GKLVAYTDLADTY 212 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~-----~--------~~~li~~l~~~gldGIEv~~~~---------~~~~~~~~lA~~~ 212 (332)
.+++.| +.|-+-|++||...+ . ...+++.+++.| -++|+..+. .....+.++|+++
T Consensus 206 ~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e~ 283 (331)
T PRK06740 206 TVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAKH 283 (331)
T ss_pred HHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHHC
Confidence 444555 478899999997321 0 012334444445 588987652 1345678899999
Q ss_pred CCceeecCCCCCCCCCCCccccc
Q 020004 213 GLLKLGGSDYHGRGGHGESELGS 235 (332)
Q Consensus 213 ~L~~tgGSD~Hg~~~~~~~~lG~ 235 (332)
|..+|-|||+|.+. .+|.
T Consensus 284 Gv~~tlgSDAH~p~-----~VG~ 301 (331)
T PRK06740 284 EVPITLSSDAHYPN-----DLGK 301 (331)
T ss_pred CCeEEEeeCCCCHH-----HHHh
Confidence 99999999999985 4665
No 30
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.012 Score=65.36 Aligned_cols=38 Identities=37% Similarity=0.700 Sum_probs=35.5
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeee
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 39 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~ 39 (332)
.++||||||+.+..++++..+|+++|+++|-|+|..-.
T Consensus 366 hkaIAITDh~~VqafP~~y~~akK~giK~IyG~Eanlv 403 (1444)
T COG2176 366 HKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLV 403 (1444)
T ss_pred CceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeec
Confidence 47899999999999999999999999999999998764
No 31
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=95.12 E-value=0.021 Score=63.98 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=42.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEec
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYY 57 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~ 57 (332)
..++|||||+++-|+.++..+|++.||+-|-|+|+...... .....|++-|-
T Consensus 33 ~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~----~~~~~~l~LLA 84 (1107)
T PRK06920 33 YSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE----EEKSYPLVLLA 84 (1107)
T ss_pred CCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC----CCCcccEEEEe
Confidence 57899999999999999999999999999999999875321 01235888885
No 32
>PRK05588 histidinol-phosphatase; Provisional
Probab=94.98 E-value=0.071 Score=49.88 Aligned_cols=71 Identities=18% Similarity=0.083 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCeEEEeCCCCCC------C-------h----HHHHHHHHHcCccEEEEeCCcC-------cHHHHHHHHH
Q 020004 155 VAVQLIHRTGGLAVLAHPWALK------N-------P----AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLAD 210 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~------~-------~----~~li~~l~~~gldGIEv~~~~~-------~~~~~~~lA~ 210 (332)
..++++.+.+.+-|+|||...+ . . ..+++.+.+.| -++|+..+.- ......+.+.
T Consensus 128 ~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~ 206 (255)
T PRK05588 128 NMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFY 206 (255)
T ss_pred HHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHH
Confidence 4556666667799999997321 0 1 23334455555 5889876431 2345677788
Q ss_pred HcCCc-eeecCCCCCCC
Q 020004 211 TYGLL-KLGGSDYHGRG 226 (332)
Q Consensus 211 ~~~L~-~tgGSD~Hg~~ 226 (332)
+.|.. +|-|||+|.+.
T Consensus 207 ~~g~~~i~lgSDAH~~~ 223 (255)
T PRK05588 207 ELGGKYITLGSDAHNIE 223 (255)
T ss_pred HcCCcEEEEECCCCCHH
Confidence 88877 79999999985
No 33
>PRK07329 hypothetical protein; Provisional
Probab=94.57 E-value=0.19 Score=46.90 Aligned_cols=72 Identities=24% Similarity=0.083 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCeEEEeCCCCC-C-------Ch-------HHHHHHHHHcCccEEEEeCCcC-------cHHHHHHHHHH
Q 020004 154 EVAVQLIHRTGGLAVLAHPWAL-K-------NP-------AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADT 211 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~-~-------~~-------~~li~~l~~~gldGIEv~~~~~-------~~~~~~~lA~~ 211 (332)
++.++.+...|=+-|+|||... + .. +.+++.+++.| -.+|+..+.. ....+.++|++
T Consensus 128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lEiNt~~~~~~~~~~~~~~~l~~~~~ 206 (246)
T PRK07329 128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDND-LAFELNTKSMYLYGNEGLYRYAIELYKQ 206 (246)
T ss_pred HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcC-CeEEEECcccccCCCCcchHHHHHHHHH
Confidence 3455566655579999999731 1 10 13344455555 5889976421 12345788999
Q ss_pred cCCc-eeecCCCCCCC
Q 020004 212 YGLL-KLGGSDYHGRG 226 (332)
Q Consensus 212 ~~L~-~tgGSD~Hg~~ 226 (332)
+|.. +|-|||+|.+.
T Consensus 207 ~g~~~i~~gSDAH~~~ 222 (246)
T PRK07329 207 LGGKLFSIGSDAHKLE 222 (246)
T ss_pred cCCeEEEecCCCCCHH
Confidence 9975 89999999985
No 34
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.26 E-value=1.3 Score=41.23 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCC---hHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHH---HHcCCceeecCCCC
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLA---DTYGLLKLGGSDYH 223 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~---~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA---~~~~L~~tgGSD~H 223 (332)
..+++=.+...|=++|+|||.|++. ....+.+|.+.|.-- -|..++- --+...++| -+.+|.-.-+||+|
T Consensus 118 a~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~s-Qvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASDAH 196 (254)
T COG4464 118 ADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAYS-QVTSSSLAGLFGKKIKKFALQLIEANLVHFIASDAH 196 (254)
T ss_pred HHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccce-eechHhHHhhhhHHHHHHHHHHHHcccceeeecccc
Confidence 4567777888899999999998652 235667777666311 1111110 012233333 35699999999999
Q ss_pred CCCCCC
Q 020004 224 GRGGHG 229 (332)
Q Consensus 224 g~~~~~ 229 (332)
....++
T Consensus 197 n~~~R~ 202 (254)
T COG4464 197 NVDKRP 202 (254)
T ss_pred ccCCCC
Confidence 987654
No 35
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=79.41 E-value=0.91 Score=42.97 Aligned_cols=75 Identities=20% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHcCCeEEEeCCCCCCC---hH-HHHHHHHHcCccEEEEeCCcC----cHHHHHHHHHHcCCceeecCC
Q 020004 150 EPLAEVAVQLIHRTGGLAVLAHPWALKN---PA-AIIRKLKDVGLHGLEVYRSDG----KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 150 ~~~~eeaI~~I~~aGGiaVlAHP~~~~~---~~-~li~~l~~~gldGIEv~~~~~----~~~~~~~lA~~~~L~~tgGSD 221 (332)
....++.++.|+..++.++..||+.... +. ...+.. .-.+.||.+|++. .+.++.+.+..|+....++||
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h--~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~ 174 (258)
T COG0613 97 QLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAH--IARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSE 174 (258)
T ss_pred cccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhh--hhhhhhccccccchHHHHHHHHhccCcccCcccccCHH
Confidence 4578999999999999999999985321 11 112222 2478999999875 345667788889999999999
Q ss_pred CCCCC
Q 020004 222 YHGRG 226 (332)
Q Consensus 222 ~Hg~~ 226 (332)
.|-..
T Consensus 175 ~~i~~ 179 (258)
T COG0613 175 AHVGA 179 (258)
T ss_pred HHHHH
Confidence 99653
No 36
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.02 E-value=5.3 Score=38.31 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHcC-CeEEEeCCCC------C-CChHHHHHHHHHcCccEEEEe--CCcCc--H---HHHHHHHHHcC
Q 020004 149 SEPLAEVAVQLIHRTG-GLAVLAHPWA------L-KNPAAIIRKLKDVGLHGLEVY--RSDGK--L---VAYTDLADTYG 213 (332)
Q Consensus 149 ~~~~~eeaI~~I~~aG-GiaVlAHP~~------~-~~~~~li~~l~~~gldGIEv~--~~~~~--~---~~~~~lA~~~~ 213 (332)
...+++|+++..++-| ||.++.|=.. + +..+..++.+.+.|+.||=+= +...+ . +.+.+-|.+|+
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence 4578999999999988 6888888644 1 123567788889999999993 34332 2 34556788999
Q ss_pred CceeecCCCCCCCCC
Q 020004 214 LLKLGGSDYHGRGGH 228 (332)
Q Consensus 214 L~~tgGSD~Hg~~~~ 228 (332)
|++ ||||..++
T Consensus 151 Lmv----nfHg~~kP 161 (273)
T PF10566_consen 151 LMV----NFHGATKP 161 (273)
T ss_dssp -EE----EETTS---
T ss_pred cEE----EecCCcCC
Confidence 998 89998643
No 37
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=68.76 E-value=13 Score=34.44 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=33.6
Q ss_pred hHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+++.|++|||++.+.. +.+.+.++.+++||-+++
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 45678888999999999987543 567788899999998876
No 38
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=67.59 E-value=12 Score=34.48 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=33.2
Q ss_pred hHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHcCCceeec
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~~L~~tgG 219 (332)
..+.++.++++|++|||++.+.. ....+.++++++||-+++-
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 35677888899999999987543 4566788999999987764
No 39
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=65.73 E-value=1.2e+02 Score=28.61 Aligned_cols=69 Identities=23% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHcCC---eEEEeCCCCC---CChHHHHHHHH---HcCccEEEEeCCcCcH---HHHHHHHHHcC--Cc
Q 020004 150 EPLAEVAVQLIHRTGG---LAVLAHPWAL---KNPAAIIRKLK---DVGLHGLEVYRSDGKL---VAYTDLADTYG--LL 215 (332)
Q Consensus 150 ~~~~eeaI~~I~~aGG---iaVlAHP~~~---~~~~~li~~l~---~~gldGIEv~~~~~~~---~~~~~lA~~~~--L~ 215 (332)
+.+..+.|+.|++..+ +.+.+||... .+.+..++.|+ ++|.+.+=. -.-.+. ..+.+.+++.| ++
T Consensus 109 f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT-Q~~fd~~~~~~~~~~~~~~gi~~P 187 (272)
T TIGR00676 109 FNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT-QLFFDNDDYYRFVDRCRAAGIDVP 187 (272)
T ss_pred CCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee-ccccCHHHHHHHHHHHHHcCCCCC
Confidence 3467788899988644 4577877632 12233344442 578874322 112233 34555666653 44
Q ss_pred eeec
Q 020004 216 KLGG 219 (332)
Q Consensus 216 ~tgG 219 (332)
+..|
T Consensus 188 Ii~G 191 (272)
T TIGR00676 188 IIPG 191 (272)
T ss_pred Eecc
Confidence 4444
No 40
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=65.71 E-value=23 Score=32.73 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCC-cCcHHHHHHHHHHcC
Q 020004 154 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS-DGKLVAYTDLADTYG 213 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~-~~~~~~~~~lA~~~~ 213 (332)
.++....++++=|+|+.+... ..-..+.+.|.+-|++.||+-.. ..-.+....+++++.
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p 63 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP 63 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc
Confidence 467788889999999998732 11234566788899999999654 333445555666655
No 41
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=63.67 E-value=7.9 Score=30.63 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=13.0
Q ss_pred CCChHHHHHHHHHcCC
Q 020004 111 APGRLHVARAMVEAGH 126 (332)
Q Consensus 111 ~~~r~hia~~Lv~~g~ 126 (332)
.+...|+|+.||+..|
T Consensus 50 ip~~sh~ArvLVeADy 65 (84)
T PF07643_consen 50 IPADSHFARVLVEADY 65 (84)
T ss_pred cCCccHHHHHHHHhhh
Confidence 4667899999999754
No 42
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=63.39 E-value=18 Score=35.82 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHcCC-eEEE----eCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcC--CceeecC
Q 020004 151 PLAEVAVQLIHRTGG-LAVL----AHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGS 220 (332)
Q Consensus 151 ~~~eeaI~~I~~aGG-iaVl----AHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~--L~~tgGS 220 (332)
..++|+|+.+|++|- +.|. .|+.........++.+.+.|+|+|++.-+ .+..++++.+ |.+..+.
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dp-----g~i~l~~e~~p~l~ih~S~ 120 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADP-----GLIMLARERGPDLPIHVST 120 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCH-----HHHHHHHHhCCCCcEEEee
Confidence 357899999999998 3333 33333222246778899999999999876 4566776655 7665554
No 43
>PLN02905 beta-amylase
Probab=62.13 E-value=13 Score=39.65 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=60.9
Q ss_pred HHHHHHHHcCccEEEE--eCCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCChHHHHH
Q 020004 180 AIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLPVLVLND 245 (332)
Q Consensus 180 ~li~~l~~~gldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p~~~~~~ 245 (332)
.-+..|+.+|+|||+| |.+.. + -..+.+++++.||-+-.-=-||.-+. .+|. +.||
T Consensus 290 a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGG----NVGD~~~IP------ 359 (702)
T PLN02905 290 KQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGG----NVGDDVCIP------ 359 (702)
T ss_pred HHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCccccc------
Confidence 4556788999999987 55431 2 13566788999987777777997553 3664 4455
Q ss_pred HhccccccchhHHHHHH--hhhcCCCCCCCcchhhhcc--ccccCCCCccCCCchhhhh
Q 020004 246 FLKVARPIWCGAIKEIL--ESYADEPSDSNLSHITRYG--RGKMLKRNYPLNCGKGLVD 300 (332)
Q Consensus 246 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 300 (332)
.|.|...+-+.. --|+.+.-.-|-+-|. +| ..+.++|-+|+-|=.|++.
T Consensus 360 -----LP~WV~e~g~~nPDifftDrsG~rn~EyLS-lg~D~~pvl~GRTplq~Y~DFM~ 412 (702)
T PLN02905 360 -----LPHWVAEIGRSNPDIFFTDREGRRNPECLS-WGIDKERILRGRTALEVYFDYMR 412 (702)
T ss_pred -----CCHHHHHhhhcCCCceEecCCCCccCceee-eecccccccCCCCHHHHHHHHHH
Confidence 255755432221 1234433333333333 33 4455666666666666654
No 44
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.09 E-value=35 Score=31.58 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCccEEEEeCCc----------CcHHHHHHHHHHcCCceeecCCCC
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD----------GKLVAYTDLADTYGLLKLGGSDYH 223 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~----------~~~~~~~~lA~~~~L~~tgGSD~H 223 (332)
....++.++++|+++||++... ...+.+.++++++||-+++..=.|
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 4577888889999999996421 124567788999999887654333
No 45
>PRK09989 hypothetical protein; Provisional
Probab=55.89 E-value=29 Score=32.07 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCccEEEEeCCc-CcHHHHHHHHHHcCCceee
Q 020004 179 AAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~~-~~~~~~~~lA~~~~L~~tg 218 (332)
.+.++.++++|+||||+..+. ...+.+.++.+++||-+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 457777888999999986543 3456778888999998775
No 46
>PRK07945 hypothetical protein; Provisional
Probab=55.69 E-value=11 Score=37.08 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHcCCeE-EEeCCCCCCChHHHHHHHHHcCccEEEEeCCc
Q 020004 152 LAEVAVQLIHRTGGLA-VLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 199 (332)
Q Consensus 152 ~~eeaI~~I~~aGGia-VlAHP~~~~~~~~li~~l~~~gldGIEv~~~~ 199 (332)
..+++++.+.+.|-.. |=+.|.+......+++..++.|+. + +..++
T Consensus 246 ~~~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~-v-tigSD 292 (335)
T PRK07945 246 DAEAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCL-F-SIDTD 292 (335)
T ss_pred CHHHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCe-E-EecCC
Confidence 4678888888877654 334454433334566777777765 3 45554
No 47
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=54.60 E-value=23 Score=33.47 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCeEEEeCCCC--------CCChHHHHHHHHHcCccEEEEeCCcC-----cHHHHHHHHHHcCCce
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 216 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~--------~~~~~~li~~l~~~gldGIEv~~~~~-----~~~~~~~lA~~~~L~~ 216 (332)
+.+-|++.|++| |.|. |+- ....+..++..++.|++.||+.++.- +...+.+.+++.|+.+
T Consensus 56 l~eki~l~~~~g-V~v~--~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 56 LKEKIDLAHSHG-VYVY--PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp HHHHHHHHHCTT--EEE--E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE
T ss_pred HHHHHHHHHHcC-CeEe--CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE
Confidence 788999999987 3332 331 11235778888999999999999864 2345667778888655
No 48
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=54.57 E-value=28 Score=26.92 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=38.4
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~i 58 (332)
+++++-+=||-=..++++.+.|+++|-.-|-|+-+++. . + -+++||-
T Consensus 17 l~iv~~~~~d~d~Al~eM~e~A~~lGAnAVVGvr~d~s-~------~---eV~ayGT 63 (74)
T TIGR03884 17 LGIVSTESDNVDEIVENLREKVKAKGGMGLIAFRITCA-D------G---KFLGYGT 63 (74)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCCEEEEEEEEcC-C------C---EEEEEEE
Confidence 45667677777778888999999999999999999986 2 2 8999983
No 49
>PLN02705 beta-amylase
Probab=54.43 E-value=17 Score=38.65 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=58.6
Q ss_pred HHHHHHHHcCccEEEE--eCCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCChHHHHH
Q 020004 180 AIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLPVLVLND 245 (332)
Q Consensus 180 ~li~~l~~~gldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p~~~~~~ 245 (332)
.-+..|+.+|+|||+| |.+.. + -..+.+++++.||-+-.-=-||.-+. .+|. +.||
T Consensus 272 a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGG----NVGD~~~IP------ 341 (681)
T PLN02705 272 QELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGG----NASGNVMIS------ 341 (681)
T ss_pred HHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCC----CCCCccccc------
Confidence 3456788999999987 55431 2 13566788999987777677997543 3564 4555
Q ss_pred HhccccccchhHHHHHH--hhhcCCCCCCCcchhhhcc--ccccCCCCccCCCchhhhh
Q 020004 246 FLKVARPIWCGAIKEIL--ESYADEPSDSNLSHITRYG--RGKMLKRNYPLNCGKGLVD 300 (332)
Q Consensus 246 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 300 (332)
.|.|...+-+.. --|..+.-.-|-+-|. +| ..+.++|-+|+-|=.|++.
T Consensus 342 -----LP~WV~e~g~~nPDifftDr~G~rn~EyLS-lg~D~~pvl~GRTplq~Y~DFM~ 394 (681)
T PLN02705 342 -----LPQWVLEIGKDNQDIFFTDREGRRNTECLS-WSIDKERVLKGRTGIEVYFDFMR 394 (681)
T ss_pred -----CCHHHHHhcccCCCceeecCCCCcccceee-eecCcccccCCCCHHHHHHHHHH
Confidence 255644332110 1233333222322222 22 3445566666666666553
No 50
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=53.79 E-value=38 Score=31.90 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCeEEEeCCC-----CCCChHHHHHHHHHcCccEEEEeCCcC-----cHHHHHHHHHHcCCce
Q 020004 153 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 216 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~-----~~~~~~~li~~l~~~gldGIEv~~~~~-----~~~~~~~lA~~~~L~~ 216 (332)
+.|-|++.|++|=-+..-..+ .....+..++..++.|++.||+.++.- +...+.+.++++|+.+
T Consensus 43 l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 678888888876322222111 001234667788899999999999753 2346677788888754
No 51
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.75 E-value=51 Score=30.33 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHcC
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYG 213 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~~ 213 (332)
..+..+.+.+.+=++|+-++... .-..+.+.+.+.|++.||+-.... -.+.+.++.++++
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~~-~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p 65 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKLE-DAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP 65 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCHH-HHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC
Confidence 34677888888989999876421 123566778888999999975443 3344556666664
No 52
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=51.24 E-value=1.2e+02 Score=29.70 Aligned_cols=66 Identities=14% Similarity=0.326 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcC--CceeecCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 221 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~--L~~tgGSD 221 (332)
|...++++.+++.||..+.-|+... ...+++.+.+.|+|.+-+.+...+.. +..+.++ +.+.|+=|
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~~~dl~---eak~~~g~k~~l~GNlD 265 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMTANNTA---ELRRLLGDKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCCCCCHH---HHHHHhCCCeEEEcCCC
Confidence 4668999999999888888898643 23578889999999988866543332 3334444 45555544
No 53
>PLN00197 beta-amylase; Provisional
Probab=50.27 E-value=29 Score=36.55 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCccEEEE--eCCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCC
Q 020004 179 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 239 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 239 (332)
..-+..|+..|+|||+| |.+.. + -..+.+++++.||-+-.-=-||.-+. .+|. +.||
T Consensus 130 ~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGG----NVGD~~~Ip 200 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGG----NVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCccccc
Confidence 34567789999999987 55431 1 23566789999987777777997553 3664 4555
No 54
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.21 E-value=1.1e+02 Score=26.22 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcC
Q 020004 85 DMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG 164 (332)
Q Consensus 85 ~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I~~aG 164 (332)
.+.+.|++.|+.++ +-|.-|.++|.+.+-..+..+.++.....+.+ ....+++.++++..++|
T Consensus 7 ~~~~~lk~~glr~T-------------~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~----islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLT-------------PQRLAVLELLLEADGHLSAEELYEELREEGPG----ISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcC-------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC----CCHhHHHHHHHHHHHCC
Confidence 45566777777765 56777888888764446666666555543322 22346666677777766
Q ss_pred CeEEEeCCC
Q 020004 165 GLAVLAHPW 173 (332)
Q Consensus 165 GiaVlAHP~ 173 (332)
=|-.++-.+
T Consensus 70 lv~~~~~~~ 78 (145)
T COG0735 70 LVHRLEFEG 78 (145)
T ss_pred CEEEEEeCC
Confidence 655555443
No 55
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=50.03 E-value=35 Score=34.01 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 151 PLAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
+....+.+.||+.||.++ |+|+++
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 466889999999999654 688883
No 56
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=49.47 E-value=27 Score=26.02 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCC
Q 020004 86 MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 128 (332)
Q Consensus 86 iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~ 128 (332)
|.+.+.+.|++-+..|+.+..|-....+-.+..++|.++||+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 4455667899999999998887542233445566777888875
No 57
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=48.53 E-value=1e+02 Score=28.85 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCC-----------------ChHHHHHH---HHHcCccEEEEeCCcCcHHHHHHHHHHc
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALK-----------------NPAAIIRK---LKDVGLHGLEVYRSDGKLVAYTDLADTY 212 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~-----------------~~~~li~~---l~~~gldGIEv~~~~~~~~~~~~lA~~~ 212 (332)
..+.|+.+++++ ++|.||-+... ..++.|++ +.++|.|+|-+-.. +.+...+++++.
T Consensus 114 ~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~i~~~~ 190 (240)
T cd06556 114 HIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQITEAL 190 (240)
T ss_pred HHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHhC
Confidence 456788888887 89999976421 01344543 45789999887644 566777888888
Q ss_pred CCcee---ecCCCCCC
Q 020004 213 GLLKL---GGSDYHGR 225 (332)
Q Consensus 213 ~L~~t---gGSD~Hg~ 225 (332)
++++. +|+++.|.
T Consensus 191 ~~P~~~~gag~~~dgq 206 (240)
T cd06556 191 AIPLAGIGAGSGTDGQ 206 (240)
T ss_pred CCCEEEEecCcCCCce
Confidence 87665 45777763
No 58
>PLN02803 beta-amylase
Probab=47.14 E-value=34 Score=35.84 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=38.9
Q ss_pred HHHHHHHHcCccEEEE--eCCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCC
Q 020004 180 AIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 239 (332)
Q Consensus 180 ~li~~l~~~gldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 239 (332)
.-+..|+.+|+|||+| |.+.. + -..+.+++++.||-+-.-=-||.-+. .+|. +.||
T Consensus 111 ~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG----NVGD~~~Ip 180 (548)
T PLN02803 111 ASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGG----NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCccccc
Confidence 4567789999999987 55431 1 13566789999987777777997554 3664 4555
No 59
>PRK05473 hypothetical protein; Provisional
Probab=46.74 E-value=46 Score=26.46 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHH
Q 020004 117 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQL 159 (332)
Q Consensus 117 ia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~ 159 (332)
+..+|.+|||-+-- -.--||-+|.|+|+|... .+...|+.
T Consensus 27 Vy~AL~EKGYNPin--QiVGYllSGDPaYItsh~-nAR~lIrk 66 (86)
T PRK05473 27 VYDALEEKGYNPIN--QIVGYLLSGDPAYIPRHN-DARNLIRK 66 (86)
T ss_pred HHHHHHHcCCChHH--HHHhhhccCCCCccCCcc-cHHHHHHH
Confidence 45677777774432 234788899999998442 44444433
No 60
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.56 E-value=1.3e+02 Score=28.34 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHc-CCceeecC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY-GLLKLGGS 220 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~-~L~~tgGS 220 (332)
..++-++...++|.-.++.|........++++.+++.|++-+=+.+|....+++..+++.- |++...++
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC
Confidence 4478888899998877888765443345667777888999888888887666666666554 35444444
No 61
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.80 E-value=1.2e+02 Score=29.17 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCccEEEEeCC-cCcHHHHHHHHHHcCC
Q 020004 179 AAIIRKLKDVGLHGLEVYRS-DGKLVAYTDLADTYGL 214 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~-~~~~~~~~~lA~~~~L 214 (332)
+..++++++.|+||+=+..- .+....+.+.|++||+
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCC
Confidence 45677788889999877653 3445567777888775
No 62
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=45.71 E-value=2.9e+02 Score=26.66 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcCC--eEEEeCCCCCC---ChHHHHHHHH---HcCccEEEEeCCcCcHH---HHHHHHHHcC--Cceee
Q 020004 152 LAEVAVQLIHRTGG--LAVLAHPWALK---NPAAIIRKLK---DVGLHGLEVYRSDGKLV---AYTDLADTYG--LLKLG 218 (332)
Q Consensus 152 ~~eeaI~~I~~aGG--iaVlAHP~~~~---~~~~li~~l~---~~gldGIEv~~~~~~~~---~~~~lA~~~~--L~~tg 218 (332)
...+.|++|++.+. +.|.+||.... +.+..+..|+ ++|.+.+=. -.-.+.+ .|.+.+++.| +++..
T Consensus 131 ~a~dLv~li~~~~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~~aGA~~~iT-Q~~Fd~~~~~~f~~~~~~~Gi~vPIi~ 209 (296)
T PRK09432 131 YASDLVTLLKSVADFDISVAAYPEVHPEAKSAQADLINLKRKVDAGANRAIT-QFFFDVESYLRFRDRCVSAGIDVEIVP 209 (296)
T ss_pred CHHHHHHHHHHhCCCccceeeCCCCCCCCCCHHHHHHHHHHHHHcCCCeeec-ccccchHHHHHHHHHHHHcCCCCCEEe
Confidence 44577888887654 56778874211 2223333443 577764321 1122333 4444555555 45444
Q ss_pred c
Q 020004 219 G 219 (332)
Q Consensus 219 G 219 (332)
|
T Consensus 210 G 210 (296)
T PRK09432 210 G 210 (296)
T ss_pred e
Confidence 4
No 63
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.53 E-value=76 Score=29.15 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHc
Q 020004 155 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTY 212 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~ 212 (332)
+.++.+.+.+=++|+..... ..-..+.+.|.+.|+.-+|+-.... -.+.+.++++++
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~ 62 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELY 62 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHc
Confidence 56788888998999986632 1223566778889999999966543 345566777777
No 64
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=44.74 E-value=1.9e+02 Score=25.54 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCC
Q 020004 66 EELENFLANIRDGRFLRAKDMILKLNKLKLPLK--WEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGP 143 (332)
Q Consensus 66 ~~l~~~l~~~r~~R~~r~~~iv~~L~~~G~~i~--~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~ 143 (332)
+.++.+.+.-|..-..-++.|+.++++.|.+.. +.++..+ +.=+|
T Consensus 49 e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dI---------------------------------SgC~~ 95 (172)
T COG2406 49 EGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDI---------------------------------SGCKP 95 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhh---------------------------------cCCCC
Confidence 456667777777777788888999998776543 2222222 22347
Q ss_pred cccCCCCCCHHHHHHHHHHc
Q 020004 144 AYSTGSEPLAEVAVQLIHRT 163 (332)
Q Consensus 144 ~yv~~~~~~~eeaI~~I~~a 163 (332)
+|.|.+.-++.+.++..-++
T Consensus 96 a~LPedp~D~~~~l~vlv~A 115 (172)
T COG2406 96 AYLPEDPYDIDEILAVLVKA 115 (172)
T ss_pred CCCCCCccCHHHHHHHHHHH
Confidence 88888777787777655443
No 65
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=42.80 E-value=45 Score=26.12 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCC
Q 020004 117 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 149 (332)
Q Consensus 117 ia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~ 149 (332)
+.++|-+|||-+--+ .--||-.|.|+|++..
T Consensus 24 Vy~AL~EKGYnPinQ--ivGYllSGDPaYItsh 54 (79)
T PF06135_consen 24 VYAALEEKGYNPINQ--IVGYLLSGDPAYITSH 54 (79)
T ss_pred HHHHHHHcCCChHHH--HHhheecCCCccccCc
Confidence 456777777744322 3478889999999843
No 66
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=42.43 E-value=1.7e+02 Score=27.88 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred hCCCCCCChHHHHHHHHHcCCC---------------CCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcC------
Q 020004 106 AGKGVAPGRLHVARAMVEAGHV---------------ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG------ 164 (332)
Q Consensus 106 ag~~~~~~r~hia~~Lv~~g~~---------------~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I~~aG------ 164 (332)
+|.+..-.-..++++|++.|.- ..++.+..+-|.+| .+++++++.+++.-
T Consensus 23 aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g---------~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 23 AGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQG---------INLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCC
Q ss_pred -CeEEEeCCCCCCChHHHHHHHHHcCccEEEEeC-CcCcHHHHHHHHHHcCCcee
Q 020004 165 -GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 165 -GiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~-~~~~~~~~~~lA~~~~L~~t 217 (332)
-+....-|......+..+++++++|+||+=+.. |..+...+.+.++++|+-.+
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
No 67
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=41.41 E-value=76 Score=34.35 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEE
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 194 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIE 194 (332)
-+.+.|+++|++|=-|..-==..--..++.-+.++..|||||-
T Consensus 291 ~ak~lvd~~H~~GkeAmmFlgD~WIGtEPy~~~F~~iGlDavv 333 (719)
T TIGR02336 291 NAKELVDMSHAAGKEAMMFLGDQWIGTEPYKDGFDEIGLDAVV 333 (719)
T ss_pred HHHHHHHHHHhcCceEEEeccCceeccccchhhhhhcCcceEe
Confidence 4578999999999766553111000123455677788888864
No 68
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=41.26 E-value=42 Score=32.70 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=30.8
Q ss_pred eCCCCCCC--hHHHHHHHHHcCccEEEEeCC------c---------CcHHHHHHHHHHcCCcee
Q 020004 170 AHPWALKN--PAAIIRKLKDVGLHGLEVYRS------D---------GKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 170 AHP~~~~~--~~~li~~l~~~gldGIEv~~~------~---------~~~~~~~~lA~~~~L~~t 217 (332)
=|++|... -...++.++++|++.|++|=+ . .+...+.++|++.||.++
T Consensus 16 ~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 16 FHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp E-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred eccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 37776541 146778889999999999732 1 135688999999999765
No 69
>PLN02801 beta-amylase
Probab=40.85 E-value=50 Score=34.45 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=42.0
Q ss_pred EeCCCCCCChHHHHHHHHHcCccEEEE--eCCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc
Q 020004 169 LAHPWALKNPAAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS 235 (332)
Q Consensus 169 lAHP~~~~~~~~li~~l~~~gldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~ 235 (332)
+.||.. ...-+..|+.+|+|||+| |.+.. + -..+.+++++.||-+-.-=-||.-+. .+|.
T Consensus 33 l~~~~~---l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG----NVGD 105 (517)
T PLN02801 33 LEDEEG---LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGG----NVGD 105 (517)
T ss_pred cCCHHH---HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCC
Confidence 555532 234667889999999987 45421 1 23566788999987777777997553 3664
Q ss_pred -ccCC
Q 020004 236 -VKLP 239 (332)
Q Consensus 236 -~~~p 239 (332)
+.||
T Consensus 106 ~~~Ip 110 (517)
T PLN02801 106 AVNIP 110 (517)
T ss_pred ccccc
Confidence 4555
No 70
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.10 E-value=2e+02 Score=26.48 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD 221 (332)
.++.-++...++|.=.|.-|......+...++.+++.|+..-=+.||....+.+..+...-+++...+.+
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVN 138 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEec
Confidence 5677888888899989999988655566778888888988888889888777888888888877777664
No 71
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.11 E-value=1.7e+02 Score=27.10 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHcCCeEEEeC--CCC-CCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCce
Q 020004 151 PLAEVAVQLIHRTGGLAVLAH--PWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLK 216 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAH--P~~-~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~ 216 (332)
..+++-++...++|.-.|+-| |.. ......+++.+++.|++.+=+.+|..+.+.+..+++.-..+.
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 477888899999988777777 322 223456777888999999999999887777777776654433
No 72
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=38.10 E-value=1.1e+02 Score=28.74 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=41.4
Q ss_pred HHHHHHHHHHc------CC-eEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC-----cHHHHHHHHHHcCCcee
Q 020004 153 AEVAVQLIHRT------GG-LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLKL 217 (332)
Q Consensus 153 ~eeaI~~I~~a------GG-iaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~-----~~~~~~~lA~~~~L~~t 217 (332)
+++-++..|+. || +..+||-. +.-++.+++....|++.||+.++.- ....+.+-|.+.|+++.
T Consensus 62 V~ekid~y~e~~i~v~pGGtlfe~a~~~--~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vl 136 (258)
T COG1809 62 VKEKIDMYKENDIYVFPGGTLFEIAYSQ--DKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVL 136 (258)
T ss_pred HHHHHHHHHHcCceecCCceEEEeehhc--ccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEe
Confidence 55666777776 44 34555532 2346788889999999999999762 23355566667777653
No 73
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.84 E-value=88 Score=30.70 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCe-EEEeCCCC
Q 020004 154 EVAVQLIHRTGGL-AVLAHPWA 174 (332)
Q Consensus 154 eeaI~~I~~aGGi-aVlAHP~~ 174 (332)
.+.+++|.+.||+ -|-+||..
T Consensus 205 D~qlkaI~~~gGvIgv~~~~~f 226 (313)
T COG2355 205 DEQLKAIAETGGVIGVNFIPAF 226 (313)
T ss_pred HHHHHHHHhcCCEEEEEeehhh
Confidence 5678889999885 56677753
No 74
>PLN02161 beta-amylase
Probab=37.75 E-value=56 Score=34.14 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCccEEEE--eCCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCC
Q 020004 179 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGG 227 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~ 227 (332)
..-+..|+.+|+|||+| |.+.. + -..+.+++++.||-.-.-=-||.-+.
T Consensus 120 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 34567889999999987 55431 1 23566788999987777777997543
No 75
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=37.03 E-value=66 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHcCCeEEE--eCCC
Q 020004 152 LAEVAVQLIHRTGGLAVL--AHPW 173 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVl--AHP~ 173 (332)
...++++.||+.|+.+++ .|++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G 104 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAG 104 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--G
T ss_pred HHHHHHHHHHhcCccceeeccccc
Confidence 567889999999997765 7865
No 76
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=36.12 E-value=2.9e+02 Score=23.93 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcc
Q 020004 66 EELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAY 145 (332)
Q Consensus 66 ~~l~~~l~~~r~~R~~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~y 145 (332)
..|..+++.+++...++..--+++=--.-+|||++||...|-+ .+.++-+.++..
T Consensus 59 ~~l~~Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~VAm~------------------------ei~~~~~~~~~~- 113 (137)
T PF10788_consen 59 KSLQNLIESLKNAQKENFELKLEKDILQQMPIDFEDVWAVAMD------------------------EIKKMRQKDGNL- 113 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------------------HHHHHHhcCCCc-
Confidence 6788889999888888876666655456799999999876521 123333333322
Q ss_pred cCCCCCCHHHHHHHHHHc
Q 020004 146 STGSEPLAEVAVQLIHRT 163 (332)
Q Consensus 146 v~~~~~~~eeaI~~I~~a 163 (332)
..+++...|..|+..
T Consensus 114 ---~~id~~~lvk~IKk~ 128 (137)
T PF10788_consen 114 ---PNIDLDKLVKNIKKE 128 (137)
T ss_pred ---CCCCHHHHHHHHHHh
Confidence 347889999999874
No 77
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.68 E-value=89 Score=29.04 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=28.6
Q ss_pred hHHHHHHHHHcCccEEEEeCCc------------CcHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~------------~~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.++++|++|||+.... .....+.+.++++||-+++
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 3567777888899999996421 1234567788899997654
No 78
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.96 E-value=99 Score=30.11 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCeEEE--eCCCCCCC---------------------------------hHHHHHHH-------HHcCc
Q 020004 153 AEVAVQLIHRTGGLAVL--AHPWALKN---------------------------------PAAIIRKL-------KDVGL 190 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVl--AHP~~~~~---------------------------------~~~li~~l-------~~~gl 190 (332)
...+++.||+.|+.+++ .|.++... ...+++.+ +++|+
T Consensus 84 ~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGf 163 (338)
T cd04733 84 FREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGF 163 (338)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred cEEEEe
Q 020004 191 HGLEVY 196 (332)
Q Consensus 191 dGIEv~ 196 (332)
||||+.
T Consensus 164 DgVeih 169 (338)
T cd04733 164 DGVQIH 169 (338)
T ss_pred CEEEEc
No 79
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=34.22 E-value=98 Score=30.41 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHcCCeE--EEeCCCC
Q 020004 151 PLAEVAVQLIHRTGGLA--VLAHPWA 174 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGia--VlAHP~~ 174 (332)
+...++++.||+.|+.+ =|.|+++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 45678899999999865 4568765
No 80
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.89 E-value=47 Score=28.67 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=26.9
Q ss_pred HHHHHcCccEEEEeCCcC--------cHHHHHHHHHHcCCceee
Q 020004 183 RKLKDVGLHGLEVYRSDG--------KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 183 ~~l~~~gldGIEv~~~~~--------~~~~~~~lA~~~~L~~tg 218 (332)
+.++++|++|||+..... ..+.+.++++++|+-+++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEE
Confidence 457789999999986432 245678899999997444
No 81
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.85 E-value=1.6e+02 Score=27.39 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCc
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 199 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~ 199 (332)
++..+.++.+.+.+=++|+-.... ..-..+.+.|.+.|+..||+-...
T Consensus 3 m~~~~~~~~l~~~~vi~Vvr~~~~-~~a~~~~~al~~gGi~~iEiT~~t 50 (222)
T PRK07114 3 FDRIAVLTAMKATGMVPVFYHADV-EVAKKVIKACYDGGARVFEFTNRG 50 (222)
T ss_pred CcHHHHHHHHHhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 344678899999998999875421 112356677888999999997654
No 82
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.77 E-value=1.1e+02 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHcCCeE--EEeCCCC
Q 020004 151 PLAEVAVQLIHRTGGLA--VLAHPWA 174 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGia--VlAHP~~ 174 (332)
+...++++.||+.|+.+ =|.|+++
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~ 102 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGR 102 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCC
Confidence 35678899999999865 4678765
No 83
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.43 E-value=94 Score=28.74 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCccEEEEeCCc------------CcHHHHHHHHHHcCCceee
Q 020004 179 AAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~~------------~~~~~~~~lA~~~~L~~tg 218 (332)
.+.++...++|+++||+.-.. .+...+.++++++||.+++
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 445566666777777774211 1234556677788876653
No 84
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.89 E-value=1.7e+02 Score=26.59 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCc-HHHHHHHHHHc-CCceeec
Q 020004 157 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK-LVAYTDLADTY-GLLKLGG 219 (332)
Q Consensus 157 I~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~-~~~~~~lA~~~-~L~~tgG 219 (332)
.+.+++.+=++|+-.... ..-..+.+.|.+.|+..||+-..... .+....+.+++ ++++-+|
T Consensus 2 ~~~l~~~~iiaVir~~~~-~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAG 65 (196)
T PF01081_consen 2 EERLKENKIIAVIRGDDP-EDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAG 65 (196)
T ss_dssp HHHHHHHSEEEEETTSSG-GGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHhhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEE
Confidence 466778888888876532 22346777888999999999765533 33344455554 3444333
No 85
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.46 E-value=1.1e+02 Score=30.35 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPW 173 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~ 173 (332)
...++++.||+.|+.++ |.|++
T Consensus 80 ~~~~lad~vH~~Ga~i~~QL~H~G 103 (362)
T PRK10605 80 AWKKITAGVHAEGGHIAVQLWHTG 103 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCC
Confidence 45677778888877543 45654
No 86
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=31.20 E-value=4.6e+02 Score=24.80 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCC-CCChHHHHHHHHHcCccEEEEeCC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRS 198 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~-~~~~~~li~~l~~~gldGIEv~~~ 198 (332)
.+.|+++.|+++-.++|...-.. ......+.+.+.+.|+|||.+.|.
T Consensus 144 ~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 144 LAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINT 191 (301)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcc
Confidence 35788999998766777664321 112234556677899999998763
No 87
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=30.82 E-value=2.8e+02 Score=25.53 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=18.4
Q ss_pred HHHHHHHHcC-CeEEEeCCCCCCChHHHHHHHHHcCccEEEE
Q 020004 155 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 195 (332)
Q Consensus 155 eaI~~I~~aG-GiaVlAHP~~~~~~~~li~~l~~~gldGIEv 195 (332)
+.++.+++.+ -+.+-+|=. ..++...++.+.++|.|-|=+
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm-~~~p~~~i~~~~~~Gad~itv 94 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM-VSNPEKWVDDFAKAGASQFTF 94 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHHcCCCEEEE
Confidence 3445555544 444444443 223444444555555555433
No 88
>PRK07329 hypothetical protein; Provisional
Probab=30.11 E-value=42 Score=31.20 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=23.8
Q ss_pred cEEEEecCCCc-----------CCH----HHHHHHHHhcCCeEEEEEEEee
Q 020004 3 KVLALTDHDTM-----------SGI----PEAIETARRFGMKIIPGVEIST 38 (332)
Q Consensus 3 ~~iAITDHDTv-----------~g~----~ea~~~a~~~GI~vIpGvEISt 38 (332)
+.|+||||--+ ..+ .++.++.++++.+|.-|+|+..
T Consensus 27 ~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~~ 77 (246)
T PRK07329 27 GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIGY 77 (246)
T ss_pred cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeCc
Confidence 57999999432 112 2333444566788999999974
No 89
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.82 E-value=1.6e+02 Score=27.06 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCc-CcHHHHHHHHHHcC
Q 020004 158 QLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 213 (332)
Q Consensus 158 ~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~-~~~~~~~~lA~~~~ 213 (332)
+.+.+.+=++|+-.... ..-..+.+.|.+.|++.||+-... .-.+...++.++++
T Consensus 3 ~~l~~~~liaVlr~~~~-e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~ 58 (204)
T TIGR01182 3 ELLREAKIVPVIRIDDV-DDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP 58 (204)
T ss_pred hHHhhCCEEEEEecCCH-HHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC
Confidence 45666777778765421 111345667888899999996543 33344555656654
No 90
>PLN02591 tryptophan synthase
Probab=29.78 E-value=2.7e+02 Score=26.27 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred hCCCCCCChHHHHHHHHHcCCC---------------CCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcC------
Q 020004 106 AGKGVAPGRLHVARAMVEAGHV---------------ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG------ 164 (332)
Q Consensus 106 ag~~~~~~r~hia~~Lv~~g~~---------------~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I~~aG------ 164 (332)
+|++..-.-..++++|++.|.- ..++++..+-|.+| .+++++++.+++.-
T Consensus 10 aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G---------~~~~~~~~~~~~~r~~~~~p 80 (250)
T PLN02591 10 AGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKG---------TTLDSVISMLKEVAPQLSCP 80 (250)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCC
Q ss_pred -CeEEEeCCCCCCChHHHHHHHHHcCccEEEEeC-CcCcHHHHHHHHHHcCCcee
Q 020004 165 -GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 165 -GiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~-~~~~~~~~~~lA~~~~L~~t 217 (332)
-+....-|......+..+++++++|+||+=+-. |.++...+.+.|+++||-.+
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
No 91
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=29.61 E-value=91 Score=30.43 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=34.9
Q ss_pred HHHHHHHHHcC-CeEEEeC-------CC--CCCChHHHHHHHHHcCccE-----EEEeCC--------cC----cHHHHH
Q 020004 154 EVAVQLIHRTG-GLAVLAH-------PW--ALKNPAAIIRKLKDVGLHG-----LEVYRS--------DG----KLVAYT 206 (332)
Q Consensus 154 eeaI~~I~~aG-GiaVlAH-------P~--~~~~~~~li~~l~~~gldG-----IEv~~~--------~~----~~~~~~ 206 (332)
.++++.|++.+ ++.+.+- +. ......+.+++|+++|++. .|.+++ .. +.....
T Consensus 106 ~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i 185 (343)
T TIGR03551 106 LDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEII 185 (343)
T ss_pred HHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHH
Confidence 56777777764 4554441 10 0012346677788888773 355542 01 122345
Q ss_pred HHHHHcCCceeec
Q 020004 207 DLADTYGLLKLGG 219 (332)
Q Consensus 207 ~lA~~~~L~~tgG 219 (332)
+.|++.|+.+++|
T Consensus 186 ~~a~~~Gi~v~s~ 198 (343)
T TIGR03551 186 KTAHKLGIPTTAT 198 (343)
T ss_pred HHHHHcCCcccce
Confidence 6777887755443
No 92
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=29.39 E-value=1.7e+02 Score=22.04 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q 020004 74 NIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIA 106 (332)
Q Consensus 74 ~~r~~R~~r~~~iv~~L~~~G~~i~~e~v~~~a 106 (332)
++|-.=.-....|++-++..|++++.+++.++.
T Consensus 7 kLRyal~l~d~~m~~if~l~~~~vs~~el~a~l 39 (68)
T PF07308_consen 7 KLRYALDLKDDDMIEIFALAGFEVSKAELSAWL 39 (68)
T ss_pred HHHHHHcCChHHHHHHHHHcCCccCHHHHHHHH
Confidence 333333344467888888888888877776554
No 93
>PLN03059 beta-galactosidase; Provisional
Probab=29.18 E-value=88 Score=34.75 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCCCCCC--hHHHHHHHHHcCccEEEEeCC--c-------------CcHHHHHHHHHHcCCceee
Q 020004 171 HPWALKN--PAAIIRKLKDVGLHGLEVYRS--D-------------GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 171 HP~~~~~--~~~li~~l~~~gldGIEv~~~--~-------------~~~~~~~~lA~~~~L~~tg 218 (332)
|++|.-. -...+.+++++|++.||.|=+ . .+..++.++|++.||.++-
T Consensus 52 HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 52 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEe
Confidence 6666421 135677889999999998621 1 1356889999999987753
No 94
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.54 E-value=1.3e+02 Score=29.44 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHcCCeE--EEeCCCC
Q 020004 152 LAEVAVQLIHRTGGLA--VLAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGia--VlAHP~~ 174 (332)
...+.++.||+.|+.+ =+.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 78 GFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHhcCCeEEEeccCCCc
Confidence 4567888899988754 4567654
No 95
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=28.32 E-value=2.4e+02 Score=24.73 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.7
Q ss_pred HHHHHcCccEEEE
Q 020004 183 RKLKDVGLHGLEV 195 (332)
Q Consensus 183 ~~l~~~gldGIEv 195 (332)
+.+.++|.|+|=+
T Consensus 71 ~~~~~aGad~i~~ 83 (202)
T cd04726 71 EMAFKAGADIVTV 83 (202)
T ss_pred HHHHhcCCCEEEE
Confidence 3334444444444
No 96
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.19 E-value=3.5e+02 Score=25.39 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC--cHHHHHHHHHHcCCceeecCCCCCCCCCCCc
Q 020004 154 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLLKLGGSDYHGRGGHGES 231 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~--~~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~ 231 (332)
.|..+.|.+++|+.|..-+. ..++.|...|..-|=+..|+. -+++-.++-..+|+-+. ||-+.+-....
T Consensus 88 ~ei~~~ie~~~~v~vvTts~------Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv---~~~~Lgi~dn~ 158 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTST------AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIV---DFKGLGITDNL 158 (238)
T ss_pred HHHHHHHHhccCCceeechH------HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEE---EeeccCCcccc
Confidence 45666666666766666432 455666666666666666553 23444455555555332 45555544455
Q ss_pred ccccc
Q 020004 232 ELGSV 236 (332)
Q Consensus 232 ~lG~~ 236 (332)
++|++
T Consensus 159 eigr~ 163 (238)
T COG3473 159 EIGRQ 163 (238)
T ss_pred hhccc
Confidence 66654
No 97
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.17 E-value=1.4e+02 Score=29.66 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHcCCeE--EEeCCCC
Q 020004 151 PLAEVAVQLIHRTGGLA--VLAHPWA 174 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGia--VlAHP~~ 174 (332)
+...++++.||+.|+.+ =|.|+++
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCC
Confidence 35577888999999865 4567764
No 98
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=28.12 E-value=1e+02 Score=30.95 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=28.2
Q ss_pred hHHHHHHHHHcCccEEEEeC----CcC-c-------HHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYR----SDG-K-------LVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~----~~~-~-------~~~~~~lA~~~~L~~tg 218 (332)
+.+.++.++++|++|||++. |.. . .+.+.+..+++||-+++
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 34677778888999999873 221 1 13567788999997554
No 99
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=27.99 E-value=91 Score=29.98 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHc--CCceeecCCCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY--GLLKLGGSDYH 223 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~--~L~~tgGSD~H 223 (332)
|...++++.||+.|+-.+.-|.... ....++.+.+.|+|++.+-+... . .+.++++ +..+.||-|-.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~~~-~---~~~~~~~~~~~~l~Gni~~~ 288 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEKVD-L---AEAKRKLGDKIVLMGNIDPV 288 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TTS--H---HHHHHHHTTSSEEEEEB-G-
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCCCC-H---HHHHHHhCCCeEEECCCCcc
Confidence 3567899999999973555676532 23577888899999999855432 2 2333343 67778887764
No 100
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.76 E-value=1.5e+02 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 151 PLAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
+...++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 456788899999998644 567654
No 101
>PRK08309 short chain dehydrogenase; Provisional
Probab=27.00 E-value=40 Score=29.89 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.0
Q ss_pred hcccChhhhhhhhHHHHHhhhcceec
Q 020004 304 SLWLTNEERQSAEFEAIKLKLSHVSI 329 (332)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (332)
|.|||.+|.-+-=+++|+.+.+..++
T Consensus 146 ~rwlt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 146 SRWLTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred cccCchHHHHHHHHHHHhcCCCeEEE
Confidence 57999999999999999999887654
No 102
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=26.94 E-value=1e+02 Score=28.11 Aligned_cols=46 Identities=30% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecC-CCCC
Q 020004 154 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGS-DYHG 224 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGS-D~Hg 224 (332)
..-+++|.++||++|+-.+.. ..+.++.+.+ .+|| |+.+||. |.|-
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~---~~~~~~~~l~-~idG---------------------lll~GG~~Di~P 73 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDA---DDEELDELLD-RIDG---------------------LLLPGGGSDIDP 73 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS-----HHHHHHHHH-CSSE---------------------EEE---SS-T-G
T ss_pred HHHHHHHHHcCCEEEEEccCC---CHHHHHHHHh-hcCE---------------------EEEcCCccchhH
Confidence 456899999999999875542 2334444432 4555 7889999 9863
No 103
>PRK15447 putative protease; Provisional
Probab=26.44 E-value=2.3e+02 Score=27.20 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCC-C-hHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeec
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALK-N-PAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~-~-~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgG 219 (332)
-.+.++++.+|++|--++++=|.-.. . ....+..+.+.+.++|.|.+.. ...++++.++.+.++
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g-----~l~~~~e~~~~l~~d 113 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLG-----AVRLLAERGLPFVAG 113 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHH-----HHHHHHhcCCCEEEe
Confidence 46688999999999888888786432 2 2234455667789999997753 345666666655444
No 104
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=1.2e+02 Score=23.87 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHH
Q 020004 117 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 162 (332)
Q Consensus 117 ia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I~~ 162 (332)
+.+.|-++||-.- .-.--|+-+|.|+|+|.. .+|-.+|+.
T Consensus 27 VY~sL~ekGYNpi--NQiVGYllSGDPaYIpr~----ndARn~IRk 66 (88)
T COG4472 27 VYNSLEEKGYNPI--NQIVGYLLSGDPAYIPRY----NDARNQIRK 66 (88)
T ss_pred HHHHHHHcCCChH--HHHHhhhccCCccccCcc----ccHHHHHHH
Confidence 3455666666332 223368888999999854 345555554
No 105
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=26.18 E-value=2.1e+02 Score=26.96 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCCC
Q 020004 181 IIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDY 222 (332)
Q Consensus 181 li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~ 222 (332)
-+..++++|+.+|=..+... ...+.++|+++||++......
T Consensus 41 d~~l~k~~G~N~iR~~h~p~-~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 41 DLELMKEMGFNAIRTHHYPP-SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHTT-SEEEETTS---SHHHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHhcCcceEEcccccC-cHHHHHHHhhcCCEEEEeccc
Confidence 34557899999999866433 357788999999999877665
No 106
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=26.09 E-value=69 Score=32.51 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCccEEEE--eCCc------C--c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCC
Q 020004 179 AAIIRKLKDVGLHGLEV--YRSD------G--K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 239 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv--~~~~------~--~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 239 (332)
...++.|+..|+|||+| |.+. . + -..+.+++++.||-+-.---||.-+. .+|. |.||
T Consensus 19 ~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~cGg----NvgD~~~Ip 89 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQCGG----NVGDDCNIP 89 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-BSS----STTSSSEB-
T ss_pred HHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeecCCC----CCCCccCCc
Confidence 34667889999999998 3321 1 2 24567889999987777667997654 3664 5566
No 107
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.93 E-value=4.2e+02 Score=25.02 Aligned_cols=59 Identities=12% Similarity=-0.026 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCC-ChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHH
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLAD 210 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~-~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~ 210 (332)
..++..++.++++|--.++- |.... ....+.+.+.+.|++-|=...+....++...+++
T Consensus 104 ~G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~ 163 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIAS 163 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 35666777777776433333 42211 1123445556667777765555554444444443
No 108
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=25.72 E-value=87 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHcCCeEEEe
Q 020004 152 LAEVAVQLIHRTGGLAVLA 170 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlA 170 (332)
-..+.|+++|++|=-|..-
T Consensus 288 ~akelVDivH~~GKeAmMF 306 (716)
T PF09508_consen 288 FAKELVDIVHEYGKEAMMF 306 (716)
T ss_dssp HHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhcCCeEEEe
Confidence 4578999999999766653
No 109
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=25.42 E-value=5.8e+02 Score=24.07 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCeEEEeCCCC-CCChHHHHHHHHHcCccEEEEeC
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYR 197 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~-~~~~~~li~~l~~~gldGIEv~~ 197 (332)
+.|+++.+++.-+++|..---. ......+.+.+.+.|+|+|.+.+
T Consensus 145 ~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 145 SADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred HHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 4678888888756666653211 11123455567789999999875
No 110
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.02 E-value=3.2e+02 Score=25.71 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCccEEEEeCC-cCcHHHHHHHHHHcCCc
Q 020004 179 AAIIRKLKDVGLHGLEVYRS-DGKLVAYTDLADTYGLL 215 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~-~~~~~~~~~lA~~~~L~ 215 (332)
+..+++++++|+||+=+..- ..+...+.+.++++|+-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVK 142 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCc
Confidence 56788889999999877542 23455677888888853
No 111
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=24.49 E-value=8.7e+02 Score=25.83 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHcC----------------CeEEEeCCCCCCChHHHHHHH---HHcCccEEEE
Q 020004 151 PLAEVAVQLIHRTG----------------GLAVLAHPWALKNPAAIIRKL---KDVGLHGLEV 195 (332)
Q Consensus 151 ~~~eeaI~~I~~aG----------------GiaVlAHP~~~~~~~~li~~l---~~~gldGIEv 195 (332)
.+..+.|+.|++.+ .+.+.++|+... .+.-++.| .++|.|.+=.
T Consensus 435 ~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~~P~~~~-~~~d~~~L~~Ki~aGAdf~iT 497 (612)
T PRK08645 435 LNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAFNPNVRN-LDKEVKRLEKKIEAGADYFIT 497 (612)
T ss_pred ccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEeCCCCCC-hHHHHHHHHHHHHcCCCEEEe
Confidence 56778899888842 367788888653 22333333 2578887644
No 112
>cd07932 arginine_kinase_like Phosphagen (guanidino) kinases such as arginine kinase and similar enzymes. Eukaryotic arginine kinase-like phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphoarginine in the case of arginine kinase (AK), which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. Besides AK, one of the most studied members of this family, this model also represents a phosphagen kinase with different substrate specificity, hypotaurocyamine kinase (HTK).
Probab=24.15 E-value=98 Score=30.85 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=57.7
Q ss_pred ccccccCChHHHHHHhccccccchhHHHHHHhhhcCC--CCCCCcchhh--hcccccc---CCCCccCCCchhhhhhhhh
Q 020004 232 ELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADE--PSDSNLSHIT--RYGRGKM---LKRNYPLNCGKGLVDECLS 304 (332)
Q Consensus 232 ~lG~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~ 304 (332)
.+|-+....+.|+-|. +.+..-|++...+|... ..++|++.+. .|+..+. .-=.+.+.++..|-..+++
T Consensus 56 ~vGi~AgD~esY~vF~----~lfdpvI~dyH~g~~~~~~h~~~~~~~~~~~~~~~~dp~~~~ViSsRVRlaRNl~g~~Fp 131 (350)
T cd07932 56 GVGIYACDPEAYTVFA----DLFDPVIEDYHGGFKPEDKHPAPDFGDLKNLELGNLDPEGKYVISTRVRCGRSVEGYPFN 131 (350)
T ss_pred CCCeecCCHHHHHHHH----HHHHHHHHHHccCCCCccccCCCCccccccccccccCCccCeeeechhhhhcccCCCCCc
Confidence 5898888888888888 55555677777666421 2367777766 3333332 2235677889999999999
Q ss_pred cccChhhhhhhhH
Q 020004 305 LWLTNEERQSAEF 317 (332)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (332)
.++|.+++...|-
T Consensus 132 ~~ls~~~r~~ve~ 144 (350)
T cd07932 132 PCLTKEQYIEMEE 144 (350)
T ss_pred ccCCHHHHHHHHH
Confidence 9999999987764
No 113
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=23.90 E-value=60 Score=22.50 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCC
Q 020004 81 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 128 (332)
Q Consensus 81 ~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~ 128 (332)
+|+-.+++.|...+-+++..++.+..|-+. .+-..+.+.|++.||+.
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~gl~~-stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARALGLPK-STVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHHTS-H-HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCcCH-HHHHHHHHHHHHCcCee
Confidence 577888888988887888889988776321 12233455666778763
No 114
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=23.75 E-value=2.6e+02 Score=26.33 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCC
Q 020004 81 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGH 126 (332)
Q Consensus 81 ~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~ 126 (332)
+..+.+.++|+.+||+++.+++.. +-+..++++.++++
T Consensus 51 ~Sk~~l~~rL~rlgf~v~eeei~t--------sl~aa~~~~~~~~l 88 (262)
T KOG3040|consen 51 ESKRNLHERLQRLGFDVSEEEIFT--------SLPAARQYLEENQL 88 (262)
T ss_pred hhHHHHHHHHHHhCCCccHHHhcC--------ccHHHHHHHHhcCC
Confidence 444678899999999999998842 23445566666654
No 115
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.32 E-value=3.9e+02 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCccEEEEeC-CcCcHHHHHHHHHHcCC
Q 020004 179 AAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 214 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~-~~~~~~~~~~lA~~~~L 214 (332)
+..+...+.+|.+|.=+.. |.++...+++.|+++++
T Consensus 113 e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gi 149 (268)
T KOG4175|consen 113 ENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGI 149 (268)
T ss_pred HHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCc
Confidence 3455566667777766654 33445566667777664
No 116
>PRK07094 biotin synthase; Provisional
Probab=23.13 E-value=1.8e+02 Score=27.87 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEE
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 193 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGI 193 (332)
+.++++.|++..++.+-.+++.. ..+.++.|+++|++.+
T Consensus 105 l~~l~~~i~~~~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v 143 (323)
T PRK07094 105 IADIIKEIKKELDVAITLSLGER--SYEEYKAWKEAGADRY 143 (323)
T ss_pred HHHHHHHHHccCCceEEEecCCC--CHHHHHHHHHcCCCEE
Confidence 44556666654445554444321 2355666666666643
No 117
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=22.98 E-value=2.5e+02 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.6
Q ss_pred EEEeCCcC---cHHHHHHHHHHcCCceeecCC
Q 020004 193 LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 193 IEv~~~~~---~~~~~~~lA~~~~L~~tgGSD 221 (332)
.|+.+.+. ....+.++|++++|+++.++|
T Consensus 163 cEil~~dG~m~~~~~~~~fA~~~~l~~isi~d 194 (199)
T TIGR00506 163 CEMMNDDGTMARKPELMEYAKKHNLKLISIED 194 (199)
T ss_pred EEEeCCCCCccCHHHHHHHHHHcCCcEEEHHH
Confidence 67777643 456889999999999999887
No 118
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.58 E-value=2e+02 Score=19.85 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 020004 69 ENFLANIRDGRFLRAKDMILKLNKLKLP 96 (332)
Q Consensus 69 ~~~l~~~r~~R~~r~~~iv~~L~~~G~~ 96 (332)
+++|+++-+.-+.-.+++.+-|++.|+|
T Consensus 18 ESLLdrItRklr~gwKRl~~iLnQpGvP 45 (45)
T PF02061_consen 18 ESLLDRITRKLRDGWKRLWDILNQPGVP 45 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3467777666666778888888887764
No 119
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=22.16 E-value=4.8e+02 Score=22.79 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHcCCeEEEeCCCC
Q 020004 159 LIHRTGGLAVLAHPWA 174 (332)
Q Consensus 159 ~I~~aGGiaVlAHP~~ 174 (332)
++|=++++.|.++|..
T Consensus 111 a~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 111 AVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHHhCCCHHH
Confidence 3455677788888853
No 120
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.06 E-value=4.4e+02 Score=26.49 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=57.0
Q ss_pred hhCCCCcccCCCCCCHHHHHHHHHHcCCeEEEeCCCC--CCChHHHHHHHHHcCccEEEEeCCc---CcHHHHHHHHHHc
Q 020004 138 LYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWA--LKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTY 212 (332)
Q Consensus 138 l~~g~~~yv~~~~~~~eeaI~~I~~aGGiaVlAHP~~--~~~~~~li~~l~~~gldGIEv~~~~---~~~~~~~~lA~~~ 212 (332)
+++|....+|. .+.-.....|-..|+.+|.+--.. +.-....+++...-...+|=..|-. .+.+.+.++|++|
T Consensus 71 ig~GDeVI~ps--~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~ 148 (374)
T COG0399 71 IGPGDEVIVPS--FTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRH 148 (374)
T ss_pred CCCCCEEEecC--CchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHc
Confidence 46666666653 566777889999999999986542 2222345554433347787777744 3678999999999
Q ss_pred CCceee-cCCCCCC
Q 020004 213 GLLKLG-GSDYHGR 225 (332)
Q Consensus 213 ~L~~tg-GSD~Hg~ 225 (332)
||+++= .+.+||.
T Consensus 149 ~l~vIEDaAqa~Ga 162 (374)
T COG0399 149 GLPVIEDAAQAHGA 162 (374)
T ss_pred CCeEEEEcchhccC
Confidence 998763 3334443
No 121
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.01 E-value=2.7e+02 Score=26.15 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=34.9
Q ss_pred eEEEeCCCCCC----ChHHHHHHHHHcCc--cE--EEEeCCcC---cHHHHHHHHHHcCCceeecCC
Q 020004 166 LAVLAHPWALK----NPAAIIRKLKDVGL--HG--LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 166 iaVlAHP~~~~----~~~~li~~l~~~gl--dG--IEv~~~~~---~~~~~~~lA~~~~L~~tgGSD 221 (332)
++..|+|+... ..+..++-..-+|+ -| .|+.+.+. ....+.++|++++|+++.++|
T Consensus 143 fPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicEil~~dG~ma~~~~l~~fA~~~~l~iisi~d 209 (230)
T PRK00014 143 FPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDE 209 (230)
T ss_pred ceEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHH
Confidence 45666664211 12333332233455 44 68888653 457889999999999999988
No 122
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.01 E-value=5.6e+02 Score=23.90 Aligned_cols=69 Identities=10% Similarity=-0.102 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCc--cEEEEeCCcCcHHHHHHHHHHcCCceeecC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGL--HGLEVYRSDGKLVAYTDLADTYGLLKLGGS 220 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gl--dGIEv~~~~~~~~~~~~lA~~~~L~~tgGS 220 (332)
.+++-++...++|+=.|.-|......+...++.+++.|. ..==+.||....+.+..+...-+++.....
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV 149 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTL 149 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEE
Confidence 467788888888988888898765555677788888886 665677887777777777777776555554
No 123
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.00 E-value=2.3e+02 Score=19.36 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=10.6
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 020004 85 DMILKLNKLKLPLKWEHV 102 (332)
Q Consensus 85 ~iv~~L~~~G~~i~~e~v 102 (332)
.+++..++.||.++.+++
T Consensus 31 e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 31 EVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHHcCCCCCHHHh
Confidence 344445567777776654
No 124
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=21.79 E-value=3.3e+02 Score=25.34 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=50.1
Q ss_pred CcccCCCCCCHHHHHHHHHHcCCeEEEeCCCCCC---ChHHHHHHHHHcCccEEEEeCC-----c-Cc-------HHHHH
Q 020004 143 PAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRS-----D-GK-------LVAYT 206 (332)
Q Consensus 143 ~~yv~~~~~~~eeaI~~I~~aGGiaVlAHP~~~~---~~~~li~~l~~~gldGIEv~~~-----~-~~-------~~~~~ 206 (332)
-.||.+.. ..+.+.+-+. ++=|++||+..+ ..+..+..++...=-+||..=+ . .. .....
T Consensus 84 vv~V~GGd---~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~G~~Rar~L~~~r~~l 159 (216)
T PRK03892 84 LIYVQGGD---LRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRANPYERANILRFMMKAW 159 (216)
T ss_pred EEEEECCc---HHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhCchhHHHHHHHHHHHH
Confidence 44555432 2345555556 799999998532 2456777776555567887432 1 11 23456
Q ss_pred HHHHHcCCceeecCCCCC
Q 020004 207 DLADTYGLLKLGGSDYHG 224 (332)
Q Consensus 207 ~lA~~~~L~~tgGSD~Hg 224 (332)
+++++|+.+.+-.|++..
T Consensus 160 ~L~rKYd~P~VISS~A~s 177 (216)
T PRK03892 160 QLVNKYKVPRFITSSAES 177 (216)
T ss_pred HHHHHcCCCEEEecCcch
Confidence 789999999888888764
No 125
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=21.44 E-value=3.4e+02 Score=26.11 Aligned_cols=45 Identities=27% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 198 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~ 198 (332)
|...++++.|++.|+..++ |-... ...+++.+.+.|+|++-+-+.
T Consensus 220 p~~k~i~~~i~~~g~~~il-H~CG~--~~~~~~~l~~~g~d~ls~d~~ 264 (340)
T TIGR01463 220 PYQKRLFAYIKEIGGITVL-HICGF--TQPILRDIANNGCFGFSVDMK 264 (340)
T ss_pred HHHHHHHHHHHhcCCceEE-EECCC--chhhHHHHHHhCCCEEeecCC
Confidence 4457888899988887776 54322 235677888889998765443
No 126
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=21.30 E-value=3.7e+02 Score=26.09 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHcC-CeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcC--CceeecCC
Q 020004 151 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 221 (332)
Q Consensus 151 ~~~eeaI~~I~~aG-GiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~--L~~tgGSD 221 (332)
|...++++.|++.| ++.|+-|.+. ....++.+.+.|++++-+-+.. +.. +..+..+ ..+.||-|
T Consensus 224 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~is~d~~~-dl~---~~k~~~g~~~~i~Gni~ 290 (346)
T PRK00115 224 PYMKRIVAELKREHPDVPVILFGKG---AGELLEAMAETGADVVGLDWTV-DLA---EARRRVGDKKALQGNLD 290 (346)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---cHHHHHHHHhcCCCEEeeCCCC-CHH---HHHHHcCCCeEEEeCCC
Confidence 45688999999998 7777755553 2356788888999998876643 222 2233333 56667664
No 127
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.28 E-value=2.2e+02 Score=27.87 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHcCCeE--EEeCCC
Q 020004 152 LAEVAVQLIHRTGGLA--VLAHPW 173 (332)
Q Consensus 152 ~~eeaI~~I~~aGGia--VlAHP~ 173 (332)
...+.++.||+.|+.+ =|.|++
T Consensus 78 ~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 78 GWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred HHHHHHHHHHhcCCeEEEEcccCc
Confidence 4567788888888753 346654
No 128
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=21.20 E-value=3.5e+02 Score=25.98 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHcC-CeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCC
Q 020004 151 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 198 (332)
Q Consensus 151 ~~~eeaI~~I~~aG-GiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~ 198 (332)
|...++++.|++.| |+.++=|.+. ....++.+.+.|++++-+-+.
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC
Confidence 45688999999987 6777766653 236788899999999877554
No 129
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=21.18 E-value=5.8e+02 Score=25.54 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeC---------CcCcHHHHHHHHHHcCCceee
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR---------SDGKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~---------~~~~~~~~~~lA~~~~L~~tg 218 (332)
+.+.++.|++++ +.|-.--. ..+..++.+.+.+.|+|.|-+.. +..+...+.++.++.++++++
T Consensus 121 ~~~ii~~vr~a~-VtvkiRl~-~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 121 LGERIAEVRDSG-VITAVRVS-PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHHHHHhcc-eEEEEecC-CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 356788888876 43332111 11334666777888999998762 222344566677777877776
No 130
>PRK08508 biotin synthase; Provisional
Probab=21.09 E-value=3.4e+02 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=24.5
Q ss_pred HHHHHHHHHcC-CeEEEeCCCCCCChHHHHHHHHHcCccEEE
Q 020004 154 EVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLE 194 (332)
Q Consensus 154 eeaI~~I~~aG-GiaVlAHP~~~~~~~~li~~l~~~gldGIE 194 (332)
.++++.|++.+ ++.+.+=.+.. ..+.+++|+++|+|.+=
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEc
Confidence 46777777776 66655433322 34677788888876653
No 131
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.03 E-value=2.3e+02 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHcCCeEE--EeCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHP 172 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP 172 (332)
....+++.||+.|+.++ |.|.
T Consensus 84 ~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 84 TAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHHcCCEEEEEccCc
Confidence 45778899999988654 3574
No 132
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=20.94 E-value=2.3e+02 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
...++.+.||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 78 ALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred HHHHHHHHHHhcCCcEEEEccCCCc
Confidence 55778888888888644 456543
No 133
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=20.85 E-value=1.6e+02 Score=32.93 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeCCCCCC--ChHHHHHHHHHcCccEEEEeCCcC-------cHHHHHHHHHHcCCceeec
Q 020004 149 SEPLAEVAVQLIHRTGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 149 ~~~~~eeaI~~I~~aGGiaVlAHP~~~~--~~~~li~~l~~~gldGIEv~~~~~-------~~~~~~~lA~~~~L~~tgG 219 (332)
.+++++|+|+..+..|.=+| ||+... ...++-+...+.|+ ...-|.. +.-.+...|.+-|++++-|
T Consensus 65 aYL~IdeII~iAk~~gaDaI--hPGYGfLSEn~efA~~c~eaGI---~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipg 139 (1149)
T COG1038 65 AYLSIDEIIRIAKRSGADAI--HPGYGFLSENPEFARACAEAGI---TFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPG 139 (1149)
T ss_pred HhccHHHHHHHHHHcCCCee--cCCcccccCCHHHHHHHHHcCC---EEeCCCHHHHHHhccHHHHHHHHHHcCCCccCC
Confidence 35899999999999996655 886432 22244445555444 4444431 2345677788888888888
Q ss_pred CC
Q 020004 220 SD 221 (332)
Q Consensus 220 SD 221 (332)
||
T Consensus 140 t~ 141 (1149)
T COG1038 140 TD 141 (1149)
T ss_pred CC
Confidence 77
No 134
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.77 E-value=2.9e+02 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=23.6
Q ss_pred EEEeCCcC---cHHHHHHHHHHcCCceeecCC
Q 020004 193 LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 193 IEv~~~~~---~~~~~~~lA~~~~L~~tgGSD 221 (332)
.|+.+.+. ....+.++|++|+|+++.++|
T Consensus 173 cEil~~dG~ma~~~~~~~fA~~~~l~~isi~d 204 (214)
T PRK01792 173 CEITNDDGTMARTPEIVEFAKKFGYAVVTIED 204 (214)
T ss_pred EEEecCCCCccCHHHHHHHHHHcCCcEEEHHH
Confidence 67777543 457889999999999999887
No 135
>PRK06740 histidinol-phosphatase; Validated
Probab=20.70 E-value=1.1e+02 Score=30.03 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.9
Q ss_pred CCeEEEEEEEee
Q 020004 27 GMKIIPGVEIST 38 (332)
Q Consensus 27 GI~vIpGvEISt 38 (332)
+|+|.-|+|+..
T Consensus 139 ~I~Il~GlE~dy 150 (331)
T PRK06740 139 GVTLKLGIEADY 150 (331)
T ss_pred CCeEEEEEEecc
Confidence 699999999985
No 136
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=20.67 E-value=32 Score=26.07 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=8.8
Q ss_pred hhhhhhhhcccCh
Q 020004 297 GLVDECLSLWLTN 309 (332)
Q Consensus 297 ~~~~~~~~~~~~~ 309 (332)
++|.-|||-|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788899999643
No 137
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.64 E-value=6.2e+02 Score=23.34 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGS 220 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGS 220 (332)
.++.-++....+|+=.|.-|......+...++.+++.|+.+==+.||..+.+.+..+...-+++...+.
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV 141 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSV 141 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEE
Confidence 466777777778888888888755455567777777787776677877776666777777775555544
No 138
>PRK06256 biotin synthase; Validated
Probab=20.30 E-value=3.4e+02 Score=26.12 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEE
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 194 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIE 194 (332)
+.++++.|++.-++-+.++.+. ...+.++.|+++|++.+-
T Consensus 128 ~~e~i~~i~~~~~i~~~~~~g~--l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 128 VVEAVKAIKEETDLEICACLGL--LTEEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHhcCCCcEEecCCc--CCHHHHHHHHHhCCCEEe
Confidence 3455666665555555565543 234566677777766653
No 139
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=20.11 E-value=3.2e+02 Score=25.93 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcC--CceeecCCCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSDYH 223 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~--L~~tgGSD~H 223 (332)
|...++++.|++.|+ .+.-|.... ....++.+.+.|+|.+-+-+.. +. .++.+.++ ..+.||-|-+
T Consensus 208 p~~k~i~~~i~~~g~-~~~lH~cG~--~~~~~~~l~~~~~d~~~~d~~~-dl---~~~~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 208 PYLKKVFDAIKALGG-PVIHHNCGD--TAPILELMADLGADVFSIDVTV-DL---AEAKKKVGDKACLMGNLDPI 275 (330)
T ss_pred HHHHHHHHHHHHcCC-ceEEEECCC--chhHHHHHHHhCCCeEeecccC-CH---HHHHHHhCCceEEEeCcChH
Confidence 456889999999855 455587632 2357888889999886654432 22 23444454 6778887766
Done!