Query 020004
Match_columns 332
No_of_seqs 211 out of 1351
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0f_A Putative metal-dependen 100.0 2.9E-55 1E-59 418.6 27.8 235 2-248 42-286 (301)
2 2yb1_A Amidohydrolase; HET: AM 100.0 2.9E-45 1E-49 347.4 23.9 227 2-238 31-264 (292)
3 3e38_A Two-domain protein cont 99.8 6.7E-21 2.3E-25 184.6 10.4 132 2-225 48-198 (343)
4 2yxo_A Histidinol phosphatase; 99.6 4.1E-15 1.4E-19 136.6 10.9 71 154-226 138-229 (267)
5 1m65_A Hypothetical protein YC 99.6 4.4E-15 1.5E-19 135.0 7.7 73 152-226 113-197 (245)
6 2anu_A Hypothetical protein TM 99.5 1.5E-14 5.1E-19 133.5 10.2 76 151-236 132-215 (255)
7 3qy7_A Tyrosine-protein phosph 99.0 5.4E-10 1.9E-14 104.1 9.7 76 151-227 116-200 (262)
8 2hnh_A DNA polymerase III alph 99.0 3E-09 1E-13 114.3 14.4 67 2-76 36-102 (910)
9 2w9m_A Polymerase X; SAXS, DNA 98.8 2.3E-08 8E-13 102.7 12.5 70 154-226 440-521 (578)
10 2wje_A CPS4B, tyrosine-protein 98.7 1.3E-08 4.6E-13 93.1 6.6 75 152-227 121-209 (247)
11 2hpi_A DNA polymerase III alph 98.6 3E-07 1E-11 101.1 15.3 58 2-59 39-102 (1220)
12 3b0x_A DNA polymerase beta fam 98.5 9.4E-07 3.2E-11 90.6 13.2 71 154-226 452-534 (575)
13 3f2b_A DNA-directed DNA polyme 97.7 3.3E-05 1.1E-09 83.8 6.7 57 2-58 146-212 (1041)
14 3dcp_A Histidinol-phosphatase; 97.6 0.00072 2.5E-08 63.2 13.6 71 155-226 162-263 (283)
15 1v77_A PH1877P, hypothetical p 97.4 0.00077 2.6E-08 60.3 9.7 65 160-226 92-173 (212)
16 3ngf_A AP endonuclease, family 72.4 6 0.00021 35.0 6.0 42 177-218 24-66 (269)
17 3kws_A Putative sugar isomeras 60.9 13 0.00045 32.9 5.9 41 178-218 40-82 (287)
18 3lmz_A Putative sugar isomeras 59.4 13 0.00046 32.4 5.6 18 179-196 33-50 (257)
19 1k77_A EC1530, hypothetical pr 57.7 13 0.00044 32.3 5.1 41 178-218 17-58 (260)
20 2q02_A Putative cytoplasmic pr 57.7 28 0.00095 30.2 7.4 14 151-164 19-32 (272)
21 3p6l_A Sugar phosphate isomera 57.3 17 0.00059 31.7 6.0 19 178-196 24-42 (262)
22 3dx5_A Uncharacterized protein 57.0 10 0.00035 33.6 4.4 18 179-196 18-35 (286)
23 3f4w_A Putative hexulose 6 pho 55.5 23 0.00079 30.1 6.4 63 155-217 42-107 (211)
24 2wje_A CPS4B, tyrosine-protein 54.5 5.5 0.00019 35.3 2.2 38 2-39 38-88 (247)
25 4gbu_A NADPH dehydrogenase 1; 53.3 20 0.00069 34.5 6.1 23 152-174 97-121 (400)
26 2qul_A D-tagatose 3-epimerase; 52.6 32 0.0011 30.1 7.0 42 178-219 19-66 (290)
27 1qwg_A PSL synthase;, (2R)-pho 49.4 26 0.00088 32.0 5.8 66 153-218 57-132 (251)
28 3vni_A Xylose isomerase domain 48.8 19 0.00066 31.8 4.9 41 178-218 19-65 (294)
29 3l23_A Sugar phosphate isomera 48.2 27 0.00091 31.6 5.8 42 178-219 31-78 (303)
30 4e38_A Keto-hydroxyglutarate-a 47.5 62 0.0021 28.9 8.0 59 153-212 24-83 (232)
31 2zvr_A Uncharacterized protein 45.8 30 0.001 30.6 5.7 39 179-217 44-85 (290)
32 2g0w_A LMO2234 protein; putati 45.5 36 0.0012 30.3 6.3 17 180-196 40-56 (296)
33 3cny_A Inositol catabolism pro 44.8 20 0.00069 31.7 4.4 64 150-215 30-105 (301)
34 3ktc_A Xylose isomerase; putat 44.8 32 0.0011 31.4 5.8 41 178-218 35-79 (333)
35 1i60_A IOLI protein; beta barr 44.4 55 0.0019 28.2 7.1 14 151-164 14-27 (278)
36 3tva_A Xylose isomerase domain 43.1 33 0.0011 30.2 5.5 46 179-224 24-76 (290)
37 3fst_A 5,10-methylenetetrahydr 43.0 2E+02 0.0069 26.5 11.6 62 151-213 130-202 (304)
38 2zds_A Putative DNA-binding pr 41.8 52 0.0018 29.5 6.8 42 177-218 16-69 (340)
39 3qc0_A Sugar isomerase; TIM ba 40.7 15 0.0005 32.1 2.7 13 152-164 19-31 (275)
40 3obe_A Sugar phosphate isomera 40.7 38 0.0013 30.7 5.6 39 180-218 40-94 (305)
41 3cqj_A L-ribulose-5-phosphate 39.9 39 0.0013 29.9 5.5 41 178-218 32-84 (295)
42 4a3u_A NCR, NADH\:flavin oxido 39.4 33 0.0011 32.4 5.1 23 152-174 80-104 (358)
43 1wdp_A Beta-amylase; (beta/alp 39.2 28 0.00097 34.7 4.6 57 179-239 36-106 (495)
44 2x7v_A Probable endonuclease 4 38.7 49 0.0017 28.8 5.9 39 177-215 13-62 (287)
45 3u0h_A Xylose isomerase domain 36.5 21 0.00073 31.1 3.1 39 179-217 19-64 (281)
46 2xfr_A Beta-amylase; hydrolase 36.1 34 0.0012 34.4 4.6 56 180-239 35-104 (535)
47 3gka_A N-ethylmaleimide reduct 35.7 68 0.0023 30.4 6.7 23 152-174 88-112 (361)
48 1u83_A Phosphosulfolactate syn 35.6 61 0.0021 29.9 6.0 65 153-218 82-156 (276)
49 1nvm_A HOA, 4-hydroxy-2-oxoval 35.2 2.2E+02 0.0076 26.3 10.2 72 151-224 67-145 (345)
50 1qtw_A Endonuclease IV; DNA re 35.1 63 0.0022 28.1 6.0 40 177-216 13-63 (285)
51 1yx1_A Hypothetical protein PA 35.1 39 0.0013 29.5 4.6 16 181-196 28-43 (264)
52 3aam_A Endonuclease IV, endoiv 34.9 77 0.0026 27.5 6.5 41 178-218 16-68 (270)
53 1vhc_A Putative KHG/KDPG aldol 33.8 1.8E+02 0.0062 25.4 8.8 65 151-216 5-71 (224)
54 2hk0_A D-psicose 3-epimerase; 31.5 37 0.0013 30.4 3.9 42 178-220 39-86 (309)
55 3kts_A Glycerol uptake operon 31.0 1.5E+02 0.0051 25.7 7.5 63 149-217 39-105 (192)
56 2qw5_A Xylose isomerase-like T 30.8 62 0.0021 29.3 5.4 40 180-219 35-87 (335)
57 3qxb_A Putative xylose isomera 30.6 71 0.0024 28.6 5.7 38 181-218 40-88 (316)
58 3aal_A Probable endonuclease 4 30.1 1.4E+02 0.0049 26.4 7.6 41 178-218 20-72 (303)
59 1icp_A OPR1, 12-oxophytodienoa 29.4 85 0.0029 29.8 6.2 23 152-174 92-116 (376)
60 4ab4_A Xenobiotic reductase B; 29.1 1.1E+02 0.0038 28.9 6.9 23 152-174 80-104 (362)
61 3kru_A NADH:flavin oxidoreduct 29.1 72 0.0025 30.0 5.6 23 152-174 82-106 (343)
62 3l5a_A NADH/flavin oxidoreduct 28.6 63 0.0022 31.3 5.2 23 152-174 105-129 (419)
63 1z41_A YQJM, probable NADH-dep 28.4 91 0.0031 28.9 6.1 23 152-174 84-108 (338)
64 2ftp_A Hydroxymethylglutaryl-C 26.9 1.8E+02 0.0061 26.4 7.8 62 152-217 63-141 (302)
65 2d73_A Alpha-glucosidase SUSB; 26.8 1.7E+02 0.0057 30.7 8.2 76 149-228 416-512 (738)
66 3jpz_A Lombricine kinase; mixe 26.6 43 0.0015 32.1 3.5 82 232-318 58-144 (366)
67 3k30_A Histamine dehydrogenase 26.0 85 0.0029 31.9 5.9 23 152-174 90-114 (690)
68 3ju5_A Arginine kinase, AK; re 25.7 47 0.0016 32.0 3.5 82 232-318 62-147 (370)
69 2eja_A URO-D, UPD, uroporphyri 25.0 78 0.0027 29.1 5.0 64 151-221 217-280 (338)
70 2jt1_A PEFI protein; solution 24.9 45 0.0015 24.6 2.6 46 82-128 5-55 (77)
71 2zuv_A Lacto-N-biose phosphory 24.4 68 0.0023 33.5 4.6 18 152-169 292-309 (759)
72 3inp_A D-ribulose-phosphate 3- 24.3 1.4E+02 0.0046 26.8 6.2 59 155-214 75-135 (246)
73 1fa2_A Beta-amylase; TIM barre 24.3 92 0.0032 31.0 5.4 56 180-239 38-107 (498)
74 1vkf_A Glycerol uptake operon 23.7 2E+02 0.0069 24.8 7.0 60 151-216 43-105 (188)
75 1mxs_A KDPG aldolase; 2-keto-3 23.4 3.1E+02 0.01 23.9 8.3 59 153-212 16-75 (225)
76 3tjl_A NADPH dehydrogenase; OL 22.8 1.3E+02 0.0044 29.1 6.1 23 152-174 93-117 (407)
77 1bxb_A Xylose isomerase; xylos 22.3 80 0.0027 29.6 4.5 41 178-218 35-87 (387)
78 3tha_A Tryptophan synthase alp 21.5 72 0.0025 28.8 3.8 73 131-214 62-142 (252)
79 1ydn_A Hydroxymethylglutaryl-C 21.1 2.2E+02 0.0075 25.5 7.1 41 152-196 59-99 (295)
80 1u60_A Probable glutaminase YB 21.0 5.1E+02 0.017 24.1 10.2 60 78-139 134-194 (310)
81 1xla_A D-xylose isomerase; iso 21.0 60 0.0021 30.6 3.3 41 178-218 35-87 (394)
82 1wbh_A KHG/KDPG aldolase; lyas 20.8 2.4E+02 0.0081 24.4 7.0 58 155-213 8-66 (214)
83 1xim_A D-xylose isomerase; iso 20.2 75 0.0026 29.9 3.8 40 178-217 35-86 (393)
84 1muw_A Xylose isomerase; atomi 20.2 64 0.0022 30.3 3.3 42 178-219 35-88 (386)
No 1
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=100.00 E-value=2.9e-55 Score=418.59 Aligned_cols=235 Identities=29% Similarity=0.457 Sum_probs=214.1
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFL 81 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~~ 81 (332)
+++||||||||+.|+.++.+++++.||.+|||+||||.|. +.++||||||+|+ .++.|+++|+.+|+.|.+
T Consensus 42 l~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~~------~~~vHiL~~~~d~---~~~~l~~~l~~~~~~R~~ 112 (301)
T 3o0f_A 42 LHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVDE------DVSVHMLAFQYDP---SNEHISSMFANTRAARLR 112 (301)
T ss_dssp CSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEET------TEEEEEEEESCCT---TCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEeC------CceEEEEEEcCCC---CCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999985 5789999999985 468999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCC--CCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHH
Q 020004 82 RAKDMILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQL 159 (332)
Q Consensus 82 r~~~iv~~L~~~G~~i~~e~v~~~ag~~--~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~ 159 (332)
|+++|+++|++. ++++||+|+++++.+ ..+||||||++|+++||+++++++|++||++++|+|||..+++++|+|++
T Consensus 113 R~~~i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~ 191 (301)
T 3o0f_A 113 RTKRMVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPSTHEVIAA 191 (301)
T ss_dssp HHHHHHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSCSSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHcCCCccccCccCCCHHHHHHH
Confidence 999999999999 999999999887542 47999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEeCCCCCC-----ChHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCCCCCCCCCCCc
Q 020004 160 IHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGGHGES 231 (332)
Q Consensus 160 I~~aGGiaVlAHP~~~~-----~~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~ 231 (332)
|+++||++|+|||+++. ...+++.+|++.|+|||||+|+.+ +.+.+.++|+++||++|||||||++.+ +.
T Consensus 192 I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~~~~~~~~~lA~~~gL~~tgGSD~Hg~~~--~~ 269 (301)
T 3o0f_A 192 VKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPPEQRERLLTIAARHDLLVTGGSDWHGKGK--PN 269 (301)
T ss_dssp HHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEECCCBCGGGS--SC
T ss_pred HHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEcCCCCCCC--CC
Confidence 99999999999997653 346788999999999999999875 456888999999999999999999743 46
Q ss_pred ccccccCChHHHHHHhc
Q 020004 232 ELGSVKLPVLVLNDFLK 248 (332)
Q Consensus 232 ~lG~~~~p~~~~~~~~~ 248 (332)
.+|.+.+|...++.|.+
T Consensus 270 ~lG~~~~~~~~~~~l~~ 286 (301)
T 3o0f_A 270 GLGENLTDDDTVREILC 286 (301)
T ss_dssp CTTSSCBCHHHHHHHHH
T ss_pred cCCCcCCCHHHHHHHHH
Confidence 89999999877776653
No 2
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=100.00 E-value=2.9e-45 Score=347.42 Aligned_cols=227 Identities=31% Similarity=0.456 Sum_probs=202.9
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFL 81 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~~ 81 (332)
+++||||||||+.|+.++.+.+++.||++|||+||++.+. +.++|+|+|++|. ..+.++++++.+++.|.+
T Consensus 31 l~~iaiTDH~~~~g~~~~~~~~~~~gi~vi~G~Ei~~~~~------~~~~hil~~~~d~---~~~~l~~~~~~~~~~r~~ 101 (292)
T 2yb1_A 31 PALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEVSVSWG------RHTVHIVGLGIDP---AEPALAAGLKSIREGRLE 101 (292)
T ss_dssp CSEEEECCBTCCTTHHHHHHHHHHTTCCEEEEEEEEEEET------TEEEEEEEESCCT---TCHHHHHHHHHHHTTHHH
T ss_pred CCEEEEecCCccccHHHHHHHHHHcCCEEEEEEEEEEecC------CceeEEEEEecCc---ccHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999899999999999999874 4579999999875 346899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHH
Q 020004 82 RAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIH 161 (332)
Q Consensus 82 r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I~ 161 (332)
|+++|+++|++.|++++++++...++++..+||+|||++|+++|++.+..++|++||+.++|+|+|..+++++++|+.|+
T Consensus 102 r~~~~~~~l~~~g~~~~~~~v~~~a~~~~~igr~H~a~~lv~~g~~~~~~~~f~~yl~~~~~~~v~~~~~~~~~~i~~i~ 181 (292)
T 2yb1_A 102 RARQMGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDAVGWIV 181 (292)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHTTCSSGGGCCHHHHHHHHHHTTSSSSHHHHHHHSSSTTSTTCCCCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHhccCCCCcCHHHHHHHHHHcCCcCCHHHHHHHHHccCCceeccCCCCCHHHHHHHHH
Confidence 99999999999999999999988766555789999999999999999999999999999999999999999999999999
Q ss_pred HcCCeEEEeCCCCCCCh----HHHHHHHHHcCccEEEEeCCcCc---HHHHHHHHHHcCCceeecCCCCCCCCCCCcccc
Q 020004 162 RTGGLAVLAHPWALKNP----AAIIRKLKDVGLHGLEVYRSDGK---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELG 234 (332)
Q Consensus 162 ~aGGiaVlAHP~~~~~~----~~li~~l~~~gldGIEv~~~~~~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG 234 (332)
++||++|+|||++++.. ..+++++.+.|++||||+++... ...+.++|+++|+++|+|||||++.+ ++..+|
T Consensus 182 ~~Gg~~VlAHP~r~~~~~~~~~~~l~~l~~~g~~giEv~~~~~~~~~~~~~~~~a~~~gl~~t~GSDaH~~~~-~~~~lG 260 (292)
T 2yb1_A 182 GAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMHKFALHADRHGLYASSGSDFHAPGE-GGRDVG 260 (292)
T ss_dssp HTTCEEEECCGGGSSCCHHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHHHHHHTCEEEEECCBCSTTC----CTT
T ss_pred HcCCEEEEECcCccccchhhHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEeeCCCCcCC-CCCcCC
Confidence 99999999999987632 45677788899999999998753 56788999999999999999999864 456799
Q ss_pred cccC
Q 020004 235 SVKL 238 (332)
Q Consensus 235 ~~~~ 238 (332)
.+..
T Consensus 261 ~~~~ 264 (292)
T 2yb1_A 261 HTED 264 (292)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 3
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=99.83 E-value=6.7e-21 Score=184.59 Aligned_cols=132 Identities=23% Similarity=0.268 Sum_probs=106.2
Q ss_pred ccEEEEecC------------CCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHH
Q 020004 2 VKVLALTDH------------DTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELE 69 (332)
Q Consensus 2 l~~iAITDH------------DTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~ 69 (332)
+++|||||| |++.|+.++.+.+++.|+.+|||+||++.+ +.+|||+||++.. .
T Consensus 48 l~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi~G~Ei~~~~--------~~gHiL~l~~~~~---~---- 112 (343)
T 3e38_A 48 LDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRAM--------APGHFNAIFLSDS---N---- 112 (343)
T ss_dssp CSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEEEECST--------TTCEEEEESCSCS---G----
T ss_pred CCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEEEEEEEEEcC--------CCcEEEEEeCCCC---C----
Confidence 689999999 778899999999999999999999999963 4799999997520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCC
Q 020004 70 NFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 149 (332)
Q Consensus 70 ~~l~~~r~~R~~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~ 149 (332)
+..
T Consensus 113 -----------------------------------------------------------------------------~~~ 115 (343)
T 3e38_A 113 -----------------------------------------------------------------------------PLE 115 (343)
T ss_dssp -----------------------------------------------------------------------------GGC
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 001
Q ss_pred CCCHHHHHHHHHHcCCeEEEeCCCCCCC-h-----HHHHHHH-HHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCCC
Q 020004 150 EPLAEVAVQLIHRTGGLAVLAHPWALKN-P-----AAIIRKL-KDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDY 222 (332)
Q Consensus 150 ~~~~eeaI~~I~~aGGiaVlAHP~~~~~-~-----~~li~~l-~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~ 222 (332)
..+++++++.++++||++|+|||++... . ...++++ ...++|||||||+...+..+.++|++++|+.+||||+
T Consensus 116 ~~~~~eli~~v~~~Ggl~iiAHP~r~~~~~~g~~~~~~~~e~l~~~~iDaIEv~N~~~~n~~A~~la~~~~l~~~~GSDa 195 (343)
T 3e38_A 116 QKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQWCLDKNLTMIGTSDI 195 (343)
T ss_dssp CSSHHHHHHHHHHTTCEEEECCTTCTTTSSSCCCCCHHHHHHHHTTCCSEEEEEETTEECTHHHHHHHHHTCEEEEECCB
T ss_pred ccCHHHHHHHHHHCCCEEEEeCCCCcccCccccccccchHHHhcccCccEEEEcCCCCccHHHHHHHhhCCCceEeECCC
Confidence 2478999999999999999999998531 1 0113333 3468999999998754556778999999999999999
Q ss_pred CCC
Q 020004 223 HGR 225 (332)
Q Consensus 223 Hg~ 225 (332)
|+.
T Consensus 196 H~~ 198 (343)
T 3e38_A 196 HQP 198 (343)
T ss_dssp CSC
T ss_pred CCC
Confidence 997
No 4
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=99.59 E-value=4.1e-15 Score=136.60 Aligned_cols=71 Identities=20% Similarity=0.148 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCC----C---------hHHHHHHHHHcCccEEEEeCCcC--------cHHHHHHHHHHc
Q 020004 154 EVAVQLIHRTGGLAVLAHPWALK----N---------PAAIIRKLKDVGLHGLEVYRSDG--------KLVAYTDLADTY 212 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~~----~---------~~~li~~l~~~gldGIEv~~~~~--------~~~~~~~lA~~~ 212 (332)
+++++++++ |+++|+|||.+.+ . ...+++.+++.| .+||+.++.. ....+.++|+++
T Consensus 138 ~~~~~~i~~-g~~~vlaHp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~iEvn~~~~~~~~~~~~~~~~~~~~~~~~ 215 (267)
T 2yxo_A 138 QEVEKAARS-GLFHAIGHLDLPKKFGHRLPEEALLELAEPALRAVAEAG-LFLDVNTAGLRRPAKEVYPAPALLRRAREL 215 (267)
T ss_dssp HHHHHHHTS-SCCSEESCTTGGGTTSCCCCHHHHHHHHHHHHHHHHHHT-CEEEEEGGGGGSTTCSCBSCHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCEEeCccHHHHhCCCCChHHHHHHHHHHHHHHHHcC-CEEEEEchHhcCCCCCCCCCHHHHHHHHHc
Confidence 678888886 9999999998632 1 124566777788 5999976531 247889999999
Q ss_pred CCceeecCCCCCCC
Q 020004 213 GLLKLGGSDYHGRG 226 (332)
Q Consensus 213 ~L~~tgGSD~Hg~~ 226 (332)
|+++|+|||+|++.
T Consensus 216 g~~~~~gSDaH~~~ 229 (267)
T 2yxo_A 216 GIGLVLGSDAHRPE 229 (267)
T ss_dssp TCCEEEECCBSSGG
T ss_pred CCCEEEecCCCCHH
Confidence 99999999999975
No 5
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=99.55 E-value=4.4e-15 Score=134.96 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCC---hHHHHHHHHHcCccEEEEeCCcC---------cHHHHHHHHHHcCCceeec
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~---~~~li~~l~~~gldGIEv~~~~~---------~~~~~~~lA~~~~L~~tgG 219 (332)
.++++++.++ +||++|+|||+++.. ...+++.+.+.| .+||++++.. ....+.++|+++|+++|+|
T Consensus 113 ~~~~~~~~i~-~g~~~vlaHp~~~~~~~~~~~~~~~~~~~g-~~iEvn~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~g 190 (245)
T 1m65_A 113 NTQAMIATIA-SGNVHIISHPGNPKYEIDVKAVAEAAAKHQ-VALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALG 190 (245)
T ss_dssp HHHHHHHHHH-TSCCSEECCTTCTTSCCCHHHHHHHHHHHT-CEEEEETTC----------CHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHh-CCCCCEEECCCCccchhHHHHHHHHHHHcC-CEEEEECCCCcccCCCCCCchHHHHHHHHHcCCEEEEE
Confidence 4578888888 899999999987542 346788888889 7999998753 2467788999999999999
Q ss_pred CCCCCCC
Q 020004 220 SDYHGRG 226 (332)
Q Consensus 220 SD~Hg~~ 226 (332)
||+|++.
T Consensus 191 SDaH~~~ 197 (245)
T 1m65_A 191 SDSHTAF 197 (245)
T ss_dssp CCBSSGG
T ss_pred CCCCChH
Confidence 9999984
No 6
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=99.54 E-value=1.5e-14 Score=133.51 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHH-----HH---HHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAA-----II---RKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDY 222 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~-----li---~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~ 222 (332)
..++++++.+++.|++.|+|||++...... .. +.+ ...+++||++++... .++|+++++++|+|||+
T Consensus 132 ~~~~~~l~~i~~~g~~~ilaHp~~~~~~~~~~~~~~~~~~~~~-~~~~~aiEin~~~~~----~~~~~~~g~~~~~gSDA 206 (255)
T 2anu_A 132 LPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERF-KDTFDAWEIANRDDL----FNSVGVKKYRYVANSDF 206 (255)
T ss_dssp SCHHHHHHHHHHTTCEEEECCCCTTC-----CCCHHHHSTTTT-TTTCSEEEEEETTEE----CHHHHHTTCCEEEECCB
T ss_pred CCHHHHHHHHHHCCCeEEEeCCCccccccccccccccchhhhh-hccCcEEEEcCCCch----hhHHHHcCCceEeccCC
Confidence 367899999999999999999997653210 11 112 236899999987632 23688999999999999
Q ss_pred CCCCCCCCcccccc
Q 020004 223 HGRGGHGESELGSV 236 (332)
Q Consensus 223 Hg~~~~~~~~lG~~ 236 (332)
|.+. .+|..
T Consensus 207 H~~~-----~ig~~ 215 (255)
T 2anu_A 207 HELW-----HVYSW 215 (255)
T ss_dssp CSGG-----GGSSE
T ss_pred CCCc-----ccCCc
Confidence 9975 46653
No 7
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=99.04 E-value=5.4e-10 Score=104.11 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCC---hHHHHHHHHHcCccEEEEeCCcC------cHHHHHHHHHHcCCceeecCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG------KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~---~~~li~~l~~~gldGIEv~~~~~------~~~~~~~lA~~~~L~~tgGSD 221 (332)
....++|..+.++|+++|+|||.++.. ..+.+..+++.|+ ++|+..+.. ....+.+.+.++|++.+.|||
T Consensus 116 ~~~~~~l~~i~~~g~v~ILAHPeRy~~~~~~~~~l~~l~~~G~-~iEiN~~s~~g~~g~~~~~~~~~~~~~gl~~~igSD 194 (262)
T 3qy7_A 116 RYAEQLFYDLQLKGYIPVIAHPERNREIRENPSLLYHLVEKGA-ASQITSGSLAGIFGKQLKAFSLRLVEANLIHFVASD 194 (262)
T ss_dssp TTHHHHHHHHHHTTCEEEEECGGGCHHHHHCTHHHHHHHHTTC-EEEEEHHHHHTTTCHHHHHHHHHHHHTTCCCEEECC
T ss_pred HHHHHHHHHHHHCCCcEEEECCCccccccccHHHHHHHHHCCC-EEEEECCccCcccchHHHHHHHHHHhCCCeEEEEcc
Confidence 467899999999999999999987642 1357888999995 899986432 245667788899999999999
Q ss_pred CCCCCC
Q 020004 222 YHGRGG 227 (332)
Q Consensus 222 ~Hg~~~ 227 (332)
+|++..
T Consensus 195 aH~~~~ 200 (262)
T 3qy7_A 195 AHNVKT 200 (262)
T ss_dssp BCSSSS
T ss_pred CCCCCC
Confidence 999864
No 8
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=98.99 E-value=3e-09 Score=114.29 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=52.8
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHH
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIR 76 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r 76 (332)
+++|||||||++.|+.++.+++++.||++|+|+|+++.+... ....+|+++|..+ .+.+.++++.+.
T Consensus 36 l~alAITDH~~~~G~~~~~~~~~~~gIk~I~G~Ei~~~~~~~---~~~~~hlv~la~n-----~~g~~nL~~l~s 102 (910)
T 2hnh_A 36 MPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLL---GDELTHLTVLAAN-----NTGYQNLTLLIS 102 (910)
T ss_dssp CSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEECTTT---TTCCEEEEEEECS-----HHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHCCCeEEEEEEEEEecCCC---CcccceEEEEEcC-----HHHHHHHHHHHH
Confidence 689999999999999999999999999999999999986410 0135899999874 345555554443
No 9
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=98.81 E-value=2.3e-08 Score=102.67 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCeEEEeCCCCC---------CChHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCC
Q 020004 154 EVAVQLIHRTGGLAVLAHPWAL---------KNPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~~---------~~~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD 221 (332)
++++++++ .|++.|+|||... ...+.+++.+++.|+ +||+.++.. ....+.++|++ |+.++.|||
T Consensus 440 ~~~~~ai~-~g~v~IlaHP~~~~~~~~~~~~~~~~~il~~~~e~g~-~lEIN~~~~r~~~~~~~~~~a~e-Gl~i~igSD 516 (578)
T 2w9m_A 440 ERLIRAVS-HPLVTVLGHATGRLLLRRPGYALDLDAVLGACEANGT-VVEINANAARLDLDWREALRWRE-RLKFAINTD 516 (578)
T ss_dssp HHHHHHHT-CSSCCEECSTTCCBTTTBCCCCCCHHHHHHHHHHHTC-EEEEECSTTTCBSCHHHHHHHTT-TCCEEEECC
T ss_pred HHHHHHHh-cCCCeEEECcchhhcCCCcCchhhHHHHHHHHHHCCC-EEEEECCCCCcCcHHHHHHHHHc-CCEEEEECC
Confidence 45555555 5999999999842 123457777877774 999987652 35678899999 999999999
Q ss_pred CCCCC
Q 020004 222 YHGRG 226 (332)
Q Consensus 222 ~Hg~~ 226 (332)
+|.+.
T Consensus 517 AH~~~ 521 (578)
T 2w9m_A 517 AHVPG 521 (578)
T ss_dssp CSSGG
T ss_pred CCChh
Confidence 99975
No 10
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=98.72 E-value=1.3e-08 Score=93.06 Aligned_cols=75 Identities=23% Similarity=0.150 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCC---hHHHHHHHHHcCccEEEEeCCcC-----------cHHHHHHHHHHcCCcee
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSDG-----------KLVAYTDLADTYGLLKL 217 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~---~~~li~~l~~~gldGIEv~~~~~-----------~~~~~~~lA~~~~L~~t 217 (332)
...+++..+.++|+++|+|||.++.. ..+++..+++.|+. +|+.++.. ....+.+++.++|+++|
T Consensus 121 ~~~~~i~~i~~~g~~~vlaHp~r~~~~~~~~~~l~~l~~~G~~-lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~~ 199 (247)
T 2wje_A 121 DIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCY-TQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHV 199 (247)
T ss_dssp HHHHHHHHHHTTTCEEEETTGGGCGGGTTCHHHHHHHHHTTCE-EEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHHHCCCcEEEEehhhHHHHhhCHHHHHHHHHCCCE-EEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeEE
Confidence 35789999999999999999987642 25788889999997 99976432 23567778899999999
Q ss_pred ecCCCCCCCC
Q 020004 218 GGSDYHGRGG 227 (332)
Q Consensus 218 gGSD~Hg~~~ 227 (332)
.|||+|++..
T Consensus 200 ~GSDaH~~~~ 209 (247)
T 2wje_A 200 IASDMHNLDG 209 (247)
T ss_dssp EECCBCCSSS
T ss_pred EEeCCCCCcc
Confidence 9999999853
No 11
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=98.64 E-value=3e-07 Score=101.09 Aligned_cols=58 Identities=26% Similarity=0.265 Sum_probs=45.6
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccC-CCC-----CCCCeEEEEeccC
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-GSE-----SEEPVHILAYYSS 59 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~-~~~-----~g~~vHILgY~id 59 (332)
+++|||||||++.|+.++.+.+++.||++|+|+|+++....+ +.. .+...|++.|..+
T Consensus 39 ~~alAITDH~~~~G~~~f~~~a~~~gIk~I~G~E~~~~~~~~~d~~~~~~~d~~~~hLvlLAkN 102 (1220)
T 2hpi_A 39 DPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKD 102 (1220)
T ss_dssp SCEEEEEEETCCTTHHHHHHHHHTTTCEEEEEEEEEEESSCTTCCCCC-----CEEEEEEEECS
T ss_pred CCEEEEEecCcchhHHHHHHHHHHcCCeEEEEEEEEEeccccccccccccccCccceEEEEEcC
Confidence 679999999999999999999999999999999999975321 000 0113799999753
No 12
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=98.48 E-value=9.4e-07 Score=90.63 Aligned_cols=71 Identities=24% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCeEEEeCCCC-C-----C---ChHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCC
Q 020004 154 EVAVQLIHRTGGLAVLAHPWA-L-----K---NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 154 eeaI~~I~~aGGiaVlAHP~~-~-----~---~~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD 221 (332)
+++++.++ .|++.|+|||.. + . ..+.+++.+.+.| .++|+..+.. ....+.+++.++|+..+.|||
T Consensus 452 ~~l~~~i~-~g~v~IlaHp~~r~~~~r~~~~~~~~~il~~~~~~g-~~lEIN~~~~~~~~~~~~~~~a~e~G~~~vigSD 529 (575)
T 3b0x_A 452 KRLLKALE-NPFVHVLAHPTARLLGRRAPIEADWEAVFQKAKEKG-VAVEIDGYYDRMDLPDDLARMAYGMGLWISLSTD 529 (575)
T ss_dssp HHHHHHTT-CTTCCEECSTTCCBTTTBCCCCCCHHHHHHHHHHHT-CEEEEECCTTTCBSCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHh-cCCCeEEECCchhhcCCCcCchHHHHHHHHHHHHcC-CEEEEeCCCCcCCchHHHHHHHHHcCCeEEEECC
Confidence 34555554 799999999972 1 1 2234666676666 6999965431 235678889999999999999
Q ss_pred CCCCC
Q 020004 222 YHGRG 226 (332)
Q Consensus 222 ~Hg~~ 226 (332)
+|.+.
T Consensus 530 AH~~~ 534 (575)
T 3b0x_A 530 AHQTD 534 (575)
T ss_dssp BSSGG
T ss_pred CCChH
Confidence 99875
No 13
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=97.72 E-value=3.3e-05 Score=83.85 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=44.2
Q ss_pred ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCC----------CCCCCeEEEEecc
Q 020004 2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS----------ESEEPVHILAYYS 58 (332)
Q Consensus 2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~----------~~g~~vHILgY~i 58 (332)
+++|||||||++.|+.++.+++++.||++|+|+|+++.+..... ......|++.|--
T Consensus 146 ~~aiAITDH~~~~G~~~~~~~a~~~gIk~I~G~E~~~~~~~~~~~~~~~~~~~~~~~~~~hlvlLAk 212 (1041)
T 3f2b_A 146 HPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYNETHRRLGSGSGPFHVTLLAQ 212 (1041)
T ss_dssp CSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEECC------------------CEEEEEEEC
T ss_pred CCEEEEecccchhhHHHHHHHHHHCCCEEEEEEEEEEEeCCcccccccccccccccCCCceEEEEeC
Confidence 57899999999999999999999999999999999998642100 0123479988853
No 14
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=97.63 E-value=0.00072 Score=63.22 Aligned_cols=71 Identities=20% Similarity=0.104 Sum_probs=46.8
Q ss_pred HHHHHHHHc-C--CeEEEeCCCCCC--C-----------------hHHHHHHHHHcCccEEEEeCCcC---------cHH
Q 020004 155 VAVQLIHRT-G--GLAVLAHPWALK--N-----------------PAAIIRKLKDVGLHGLEVYRSDG---------KLV 203 (332)
Q Consensus 155 eaI~~I~~a-G--GiaVlAHP~~~~--~-----------------~~~li~~l~~~gldGIEv~~~~~---------~~~ 203 (332)
.++++|+.. | -+-|++||...+ . .+.+++.+++.| -++|+..+.. ...
T Consensus 162 ~~~~~i~~~l~~~~~dilgH~Dlir~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiN~~~l~~~~~~~~yp~~ 240 (283)
T 3dcp_A 162 GVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRD-YELDFNTAGLFKPLCGETYPPK 240 (283)
T ss_dssp HHHHHHHCCCCTTCCSEECCTTGGGTTGGGGTCCGGGCCHHHHHHHHHHHHHHHHHT-CEEEEECGGGGSTTCCSCBSCH
T ss_pred HHHHHHHhCccccCCCEEECCcHHHHcCcccccccccccHHHHHHHHHHHHHHHHcC-CEEEEechHhcCCCCCCcCCHH
Confidence 455555552 2 236999998311 0 123444455555 4789976431 246
Q ss_pred HHHHHHHHcCCceeecCCCCCCC
Q 020004 204 AYTDLADTYGLLKLGGSDYHGRG 226 (332)
Q Consensus 204 ~~~~lA~~~~L~~tgGSD~Hg~~ 226 (332)
.+.++|+++|..++-|||+|.+.
T Consensus 241 ~~~~~~~~~g~~i~igSDAH~~~ 263 (283)
T 3dcp_A 241 KIVTLASELQIPFVYGSDSHGVQ 263 (283)
T ss_dssp HHHHHHHHTTCCEEEECCBSSGG
T ss_pred HHHHHHHHcCCCEEEEcCCCCHH
Confidence 78899999999999999999975
No 15
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=97.37 E-value=0.00077 Score=60.29 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=47.0
Q ss_pred HHHcCCeEEEeCCCCCCC----hHHHHHHHHHcCccEEEEeCCcC---c----------HHHHHHHHHHcCCceeecCCC
Q 020004 160 IHRTGGLAVLAHPWALKN----PAAIIRKLKDVGLHGLEVYRSDG---K----------LVAYTDLADTYGLLKLGGSDY 222 (332)
Q Consensus 160 I~~aGGiaVlAHP~~~~~----~~~li~~l~~~gldGIEv~~~~~---~----------~~~~~~lA~~~~L~~tgGSD~ 222 (332)
+-+. .+=|++||+..+. ...+++..++.|+ .+|+.++.. . ...+.++|+++|.+++-|||+
T Consensus 92 a~~~-~vDII~Hp~~~~~~~~~~~~~a~~A~e~gv-~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisSDA 169 (212)
T 1v77_A 92 SIEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNV-ALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSA 169 (212)
T ss_dssp HHHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTC-EEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred HHhC-CCCEEecccccccCCCCCHHHHHHHHHCCe-EEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 3345 7999999986532 1355555666674 899988652 1 124678899999999999999
Q ss_pred CCCC
Q 020004 223 HGRG 226 (332)
Q Consensus 223 Hg~~ 226 (332)
|.+.
T Consensus 170 h~~~ 173 (212)
T 1v77_A 170 QEKW 173 (212)
T ss_dssp SSGG
T ss_pred CChh
Confidence 9875
No 16
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=72.43 E-value=6 Score=35.01 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHcCCceee
Q 020004 177 NPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 177 ~~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~~L~~tg 218 (332)
...+.++.+++.|+||||++.+.. +.+.+.++++++||-+++
T Consensus 24 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~ 66 (269)
T 3ngf_A 24 PFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVL 66 (269)
T ss_dssp CHHHHHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEE
Confidence 346788888999999999987643 567888999999998775
No 17
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=60.94 E-value=13 Score=32.91 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=27.5
Q ss_pred hHHHHHHHHHcCccEEEEeCCc--CcHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD--GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~--~~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+++.|++|||++... ...+.+.++++++||-+++
T Consensus 40 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gl~v~~ 82 (287)
T 3kws_A 40 LNEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIKVSA 82 (287)
T ss_dssp HHHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCEECE
T ss_pred HHHHHHHHHHcCCCEEEecCCchHHHHHHHHHHHHHcCCeEEE
Confidence 4566777777788888877652 3455667777778876653
No 18
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=59.37 E-value=13 Score=32.41 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=9.0
Q ss_pred HHHHHHHHHcCccEEEEe
Q 020004 179 AAIIRKLKDVGLHGLEVY 196 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~ 196 (332)
.+.++.++++|++|||++
T Consensus 33 ~~~l~~~~~~G~~~vEl~ 50 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIK 50 (257)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 344444455555555554
No 19
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=57.75 E-value=13 Score=32.29 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCccEEEEeCCc-CcHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~-~~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+++.|++|||+..+. .+.+.+.++++++||.+++
T Consensus 17 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (260)
T 1k77_A 17 FIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLAL 58 (260)
T ss_dssp GGGHHHHHHHHTCSEEECSCCTTSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCEEEecCCCCCCHHHHHHHHHHcCCceEE
Confidence 4567788889999999998654 3566788899999998775
No 20
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=57.74 E-value=28 Score=30.22 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHcC
Q 020004 151 PLAEVAVQLIHRTG 164 (332)
Q Consensus 151 ~~~eeaI~~I~~aG 164 (332)
.+++++++.++++|
T Consensus 19 ~~~~~~l~~~~~~G 32 (272)
T 2q02_A 19 LSIEAFFRLVKRLE 32 (272)
T ss_dssp SCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcC
Confidence 46677777777766
No 21
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=57.34 E-value=17 Score=31.66 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=11.4
Q ss_pred hHHHHHHHHHcCccEEEEe
Q 020004 178 PAAIIRKLKDVGLHGLEVY 196 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~ 196 (332)
....++.++++|+++||++
T Consensus 24 ~~~~l~~~~~~G~~~vEl~ 42 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIY 42 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEeec
Confidence 3455555666666666665
No 22
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=57.00 E-value=10 Score=33.55 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=10.1
Q ss_pred HHHHHHHHHcCccEEEEe
Q 020004 179 AAIIRKLKDVGLHGLEVY 196 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~ 196 (332)
.+.++.++++|++|||++
T Consensus 18 ~~~l~~~~~~G~~~vEl~ 35 (286)
T 3dx5_A 18 TDIVQFAYENGFEGIELW 35 (286)
T ss_dssp HHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 445555555666666654
No 23
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=55.53 E-value=23 Score=30.11 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=40.6
Q ss_pred HHHHHHHHc-CCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC--cHHHHHHHHHHcCCcee
Q 020004 155 VAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLLKL 217 (332)
Q Consensus 155 eaI~~I~~a-GGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~--~~~~~~~lA~~~~L~~t 217 (332)
+.|+.+++. .++.|.+|+.....+...++.+.++|.|+|=+..... ....+.+.++++|+.+.
T Consensus 42 ~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~ 107 (211)
T 3f4w_A 42 NAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVV 107 (211)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEE
Confidence 567777776 4677888875433333447777788888887754332 23566777788876443
No 24
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=54.51 E-value=5.5 Score=35.35 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=24.3
Q ss_pred ccEEEEecCCCcCC-----------HHHHHHHHH--hcCCeEEEEEEEeee
Q 020004 2 VKVLALTDHDTMSG-----------IPEAIETAR--RFGMKIIPGVEISTI 39 (332)
Q Consensus 2 l~~iAITDHDTv~g-----------~~ea~~~a~--~~GI~vIpGvEISt~ 39 (332)
++.|++|||-.... +.++.+..+ ..+|++.+|+|+...
T Consensus 38 i~~i~~TdH~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~G~E~~~~ 88 (247)
T 2wje_A 38 VRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYYT 88 (247)
T ss_dssp EEEEECCCEEBTTTBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCCEEECC
T ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEeeEEeec
Confidence 57899999965321 112222122 248999999999873
No 25
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=53.30 E-value=20 Score=34.47 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 97 ~~k~l~davH~~G~~i~~QL~H~Gr 121 (400)
T 4gbu_A 97 EWTKIFNAIHEKKSFVWVQLAVLGW 121 (400)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCceEEeeeecCc
Confidence 45788999999999655 578764
No 26
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=52.61 E-value=32 Score=30.14 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.3
Q ss_pred hHHHHHHHHHcCccEEEEeCCc------CcHHHHHHHHHHcCCceeec
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD------GKLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~------~~~~~~~~lA~~~~L~~tgG 219 (332)
..+.++.+++.|++|||+.... .....+.++++++||-+++.
T Consensus 19 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 66 (290)
T 2qul_A 19 FPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCC 66 (290)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEe
Confidence 4567888889999999998643 12456778899999988774
No 27
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=49.40 E-value=26 Score=31.98 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCeEEEeCCC-----CCCChHHHHHHHHHcCccEEEEeCCcC-----cHHHHHHHHHHcCCceee
Q 020004 153 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~-----~~~~~~~li~~l~~~gldGIEv~~~~~-----~~~~~~~lA~~~~L~~tg 218 (332)
+.|-|++.|++|=-+..-..+ .....+..++..++.|++.||+.++.- +...+.+.++++|+.+..
T Consensus 57 l~eki~l~~~~gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~ 132 (251)
T 1qwg_A 57 VKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLT 132 (251)
T ss_dssp HHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCeEECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEee
Confidence 678889999887433332211 012346788888999999999999763 234577888899987643
No 28
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=48.79 E-value=19 Score=31.82 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCccEEEEeCCc------CcHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD------GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~------~~~~~~~~lA~~~~L~~tg 218 (332)
....++.+.+.|++|||++... ...+.+.++++++||-+++
T Consensus 19 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 65 (294)
T 3vni_A 19 YKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTV 65 (294)
T ss_dssp HHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEE
Confidence 4677888888999999998432 1345677889999998877
No 29
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=48.16 E-value=27 Score=31.60 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCccEEEEeC-----Cc-CcHHHHHHHHHHcCCceeec
Q 020004 178 PAAIIRKLKDVGLHGLEVYR-----SD-GKLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~-----~~-~~~~~~~~lA~~~~L~~tgG 219 (332)
....++.++++|+++||++. .. .+.+.+.++++++||-+++.
T Consensus 31 ~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~~ 78 (303)
T 3l23_A 31 VAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIISS 78 (303)
T ss_dssp HHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEEE
Confidence 45678888899999999975 11 24677889999999987653
No 30
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=47.51 E-value=62 Score=28.88 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeC-CcCcHHHHHHHHHHc
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTY 212 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~-~~~~~~~~~~lA~~~ 212 (332)
..+..+.+.+.+=++|+-.... .....+.+.+.+.|++.||+-. +....+...++.+++
T Consensus 24 m~~~~~~l~~~~vv~Vir~~~~-~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~ 83 (232)
T 4e38_A 24 MSTINNQLKALKVIPVIAIDNA-EDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ 83 (232)
T ss_dssp HHHHHHHHHHHCEEEEECCSSG-GGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC
Confidence 4578899999999999986532 2234567778889999999954 334344555666665
No 31
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=45.76 E-value=30 Score=30.63 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCccEEEEeCCc---CcHHHHHHHHHHcCCcee
Q 020004 179 AAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~~---~~~~~~~~lA~~~~L~~t 217 (332)
.+.++.+++.|++|||+.... .+.+.+.++++++||.++
T Consensus 44 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~ 85 (290)
T 2zvr_A 44 RKGMELAKRVGYQAVEIAVRDPSIVDWNEVKILSEELNLPIC 85 (290)
T ss_dssp HHHHHHHHHHTCSEEEEECSCGGGSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhCCCEEEEcCCCcchhhHHHHHHHHHHcCCeEE
Confidence 456777788999999998653 346678889999999873
No 32
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=45.48 E-value=36 Score=30.33 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=8.4
Q ss_pred HHHHHHHHcCccEEEEe
Q 020004 180 AIIRKLKDVGLHGLEVY 196 (332)
Q Consensus 180 ~li~~l~~~gldGIEv~ 196 (332)
..++..++.|++|||++
T Consensus 40 ~~l~~a~~~G~~~vEl~ 56 (296)
T 2g0w_A 40 KRVKVAAENGFDGIGLR 56 (296)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 34444445555555554
No 33
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=44.80 E-value=20 Score=31.65 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHcCCeEE-EeCCCCCCChHHHHHHHHHcCccEEEEeCCcC-----------cHHHHHHHHHHcCCc
Q 020004 150 EPLAEVAVQLIHRTGGLAV-LAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-----------KLVAYTDLADTYGLL 215 (332)
Q Consensus 150 ~~~~eeaI~~I~~aGGiaV-lAHP~~~~~~~~li~~l~~~gldGIEv~~~~~-----------~~~~~~~lA~~~~L~ 215 (332)
..+++++++.++++|-=.| +.+++. ....+-+.+.+.|+.-.-++.+.. ......++|++.|..
T Consensus 30 ~~~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~ 105 (301)
T 3cny_A 30 DNNLQQLLSDIVVAGFQGTEVGGFFP--GPEKLNYELKLRNLEIAGQWFSSYIIRDGIEKASEAFEKHCQYLKAINAP 105 (301)
T ss_dssp TCCHHHHHHHHHHHTCCEECCCTTCC--CHHHHHHHHHHTTCEECEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCCCEEEecCCCC--CHHHHHHHHHHCCCeEEEEeccCCCChhhHHHHHHHHHHHHHHHHHcCCC
Confidence 3689999999999975333 335543 444555566677765433322111 123456778888864
No 34
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=44.76 E-value=32 Score=31.41 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=28.8
Q ss_pred hHHHHHHHHHc-CccEEEEeCCc---CcHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDV-GLHGLEVYRSD---GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~-gldGIEv~~~~---~~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+++. |++|||+..+. .+.+.+.++++++||-+++
T Consensus 35 ~~e~l~~aa~~~G~~~VEl~~~~~~~~~~~~l~~~l~~~Gl~i~~ 79 (333)
T 3ktc_A 35 TIDQINAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAGLKAIG 79 (333)
T ss_dssp HHHHHHHHHHHSSEEEEEEEESCSTTCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhCCCCEEEecCCCcchhHHHHHHHHHHHcCCeEEE
Confidence 35677777778 88888886543 3456777888888886653
No 35
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=44.44 E-value=55 Score=28.24 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHcC
Q 020004 151 PLAEVAVQLIHRTG 164 (332)
Q Consensus 151 ~~~eeaI~~I~~aG 164 (332)
.+++++++.++++|
T Consensus 14 ~~~~~~l~~~~~~G 27 (278)
T 1i60_A 14 SNLKLDLELCEKHG 27 (278)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhC
Confidence 45666666666665
No 36
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=43.15 E-value=33 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCccEEEEeCCcC------cHHHHHHHHHHcCCceeec-CCCCC
Q 020004 179 AAIIRKLKDVGLHGLEVYRSDG------KLVAYTDLADTYGLLKLGG-SDYHG 224 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~~~------~~~~~~~lA~~~~L~~tgG-SD~Hg 224 (332)
.+.++.++++|++|||++.... ..+.+.++++++||-+++. +.+++
T Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g 76 (290)
T 3tva_A 24 GVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFGGFDG 76 (290)
T ss_dssp SBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEECCCTT
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEeeccCC
Confidence 3567788899999999986432 2456788899999987664 34443
No 37
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=42.98 E-value=2e+02 Score=26.45 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHcCCe--EEEeCCCCC---CChHHHHHHHH---HcCccEEEEeCCcCcHHH---HHHHHHHcC
Q 020004 151 PLAEVAVQLIHRTGGL--AVLAHPWAL---KNPAAIIRKLK---DVGLHGLEVYRSDGKLVA---YTDLADTYG 213 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGi--aVlAHP~~~---~~~~~li~~l~---~~gldGIEv~~~~~~~~~---~~~lA~~~~ 213 (332)
....+.|+.|++.+++ .|.++|... .+.+..+..|+ ++|.|.+=. -.-.+.+. |.+.+++.|
T Consensus 130 ~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~iT-Q~ffD~~~~~~f~~~~r~~G 202 (304)
T 3fst_A 130 MYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAIT-QFFFDVESYLRFRDRCVSAG 202 (304)
T ss_dssp CCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEEE-CCCSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEe-CccCCHHHHHHHHHHHHhcC
Confidence 4678899999988875 566665421 22333444443 679888533 12223443 445556555
No 38
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=41.82 E-value=52 Score=29.53 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHcCccEEEEeCC-c-C----------cHHHHHHHHHHcCCceee
Q 020004 177 NPAAIIRKLKDVGLHGLEVYRS-D-G----------KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 177 ~~~~li~~l~~~gldGIEv~~~-~-~----------~~~~~~~lA~~~~L~~tg 218 (332)
.....++.+++.|++|||+... . . ....+.++++++||-+++
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 69 (340)
T 2zds_A 16 PLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWA 69 (340)
T ss_dssp CHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEEE
Confidence 3456788888999999999752 1 1 135677889999998764
No 39
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=40.68 E-value=15 Score=32.09 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHcC
Q 020004 152 LAEVAVQLIHRTG 164 (332)
Q Consensus 152 ~~eeaI~~I~~aG 164 (332)
+++++++.++++|
T Consensus 19 ~~~~~l~~~~~~G 31 (275)
T 3qc0_A 19 GFAEAVDICLKHG 31 (275)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcC
Confidence 5555555555554
No 40
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=40.67 E-value=38 Score=30.65 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=21.5
Q ss_pred HHHHHHHHcCccEEEEeCC--------cC--------cHHHHHHHHHHcCCceee
Q 020004 180 AIIRKLKDVGLHGLEVYRS--------DG--------KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 180 ~li~~l~~~gldGIEv~~~--------~~--------~~~~~~~lA~~~~L~~tg 218 (332)
+.++.++++|+++||++.. .. +.+.+.++.+++||-+++
T Consensus 40 ~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~ 94 (305)
T 3obe_A 40 NGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISS 94 (305)
T ss_dssp HHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEE
Confidence 4555556666666666532 11 334555666666665544
No 41
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=39.91 E-value=39 Score=29.90 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCccEEEEeCCcC------------cHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSDG------------KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~~------------~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+++.|++|||+..... ..+.+.++++++||-+++
T Consensus 32 ~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 84 (295)
T 3cqj_A 32 WLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPS 84 (295)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 45677788889999999975421 134567788999998764
No 42
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=39.44 E-value=33 Score=32.43 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 80 ~~k~l~~avh~~G~~i~~QL~H~Gr 104 (358)
T 4a3u_A 80 AWLPITQAVHDAGGLIFAQLWHMGR 104 (358)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCceeeccccccc
Confidence 45678999999999644 678764
No 43
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=39.21 E-value=28 Score=34.69 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCccEEEE--eCCc--------Cc---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCC
Q 020004 179 AAIIRKLKDVGLHGLEV--YRSD--------GK---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 239 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv--~~~~--------~~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 239 (332)
..-++.|+.+|+|||++ |.+. .+ -..+.+++++.||-+-.-=-||.-+. .+|. |.||
T Consensus 36 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGg----NVGD~~~IP 106 (495)
T 1wdp_A 36 KEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGG----NVGDIVNIP 106 (495)
T ss_dssp HHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCC----STTCSCCBC
T ss_pred HHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCC----CCCCccccc
Confidence 34567889999999988 3321 12 24667889999997766666998654 4665 5666
No 44
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=38.74 E-value=49 Score=28.83 Aligned_cols=39 Identities=5% Similarity=0.170 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHcCccEEEEeCCc-----------CcHHHHHHHHHHcCCc
Q 020004 177 NPAAIIRKLKDVGLHGLEVYRSD-----------GKLVAYTDLADTYGLL 215 (332)
Q Consensus 177 ~~~~li~~l~~~gldGIEv~~~~-----------~~~~~~~~lA~~~~L~ 215 (332)
.....++.+++.|++|||++... ...+.+.++++++||-
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 62 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGID 62 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCC
Confidence 44567888899999999997421 1235677889999997
No 45
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=36.49 E-value=21 Score=31.07 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCccEEEEeCCc-------CcHHHHHHHHHHcCCcee
Q 020004 179 AAIIRKLKDVGLHGLEVYRSD-------GKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 179 ~~li~~l~~~gldGIEv~~~~-------~~~~~~~~lA~~~~L~~t 217 (332)
.+.++.+++.|++|||++... ...+.+.++++++||-++
T Consensus 19 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 64 (281)
T 3u0h_A 19 VLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLA 64 (281)
T ss_dssp HHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEEC
T ss_pred HHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceE
Confidence 345555555666666665421 122344455555665443
No 46
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=36.10 E-value=34 Score=34.43 Aligned_cols=56 Identities=29% Similarity=0.461 Sum_probs=39.0
Q ss_pred HHHHHHHHcCccEEEE--eCCc--------Cc---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCC
Q 020004 180 AIIRKLKDVGLHGLEV--YRSD--------GK---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 239 (332)
Q Consensus 180 ~li~~l~~~gldGIEv--~~~~--------~~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 239 (332)
.-++.|+.+|+|||+| |.+. .+ -..+.+++++.||-+-.-=-||.-+. .+|. |.||
T Consensus 35 a~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq~vmSFHqCGg----NVGD~~~IP 104 (535)
T 2xfr_A 35 AQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGG----NVGDAVNIP 104 (535)
T ss_dssp HHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCC----STTCSCCBC
T ss_pred HHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCC----CCCCccccc
Confidence 4567889999999988 3321 12 24567889999997766666998654 4665 5666
No 47
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=35.74 E-value=68 Score=30.44 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 88 ~~k~l~~avH~~G~~i~~QL~H~Gr 112 (361)
T 3gka_A 88 GWRLVTDAVHAAGGRIFLQLWHVGR 112 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeEEEeeccCCc
Confidence 45778899999999644 578764
No 48
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=35.62 E-value=61 Score=29.92 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeEEEeCCC-----CCCChHHHHHHHHHcCccEEEEeCCcC-----cHHHHHHHHHHcCCceee
Q 020004 153 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~-----~~~~~~~li~~l~~~gldGIEv~~~~~-----~~~~~~~lA~~~~L~~tg 218 (332)
+.|-|++.|++|=-+..-..+ .....+..++..++.|++.||+.++.- +...+.+.|++. +.+..
T Consensus 82 l~ekI~l~~~~gV~v~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~-f~Vl~ 156 (276)
T 1u83_A 82 LEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDE-FLVLS 156 (276)
T ss_dssp HHHHHHHHHHTTCEEEECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTT-SEEEE
T ss_pred HHHHHHHHHHcCCeEeCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhh-cEEee
Confidence 999999999988444433321 112346788888999999999999763 223455666666 54443
No 49
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=35.21 E-value=2.2e+02 Score=26.33 Aligned_cols=72 Identities=13% Similarity=-0.008 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHc-CCe--EEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeec-CCCC
Q 020004 151 PLAEVAVQLIHRT-GGL--AVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGG-SDYH 223 (332)
Q Consensus 151 ~~~eeaI~~I~~a-GGi--aVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgG-SD~H 223 (332)
.+..|.++.+++. .++ +++..|.+. ....++...++|+|++=++.+.. ......++|+++|+-+.+. +|++
T Consensus 67 ~~~~e~l~~i~~~~~~~~i~~l~~p~~~--~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~ 144 (345)
T 1nvm_A 67 HTDLEYIEAVAGEISHAQIATLLLPGIG--SVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSH 144 (345)
T ss_dssp SCHHHHHHHHHTTCSSSEEEEEECBTTB--CHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTT
T ss_pred CCHHHHHHHHHhhCCCCEEEEEecCCcc--cHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCC
Confidence 4667788777664 343 333345432 24567777788999998876543 3456677888888866555 6765
Q ss_pred C
Q 020004 224 G 224 (332)
Q Consensus 224 g 224 (332)
.
T Consensus 145 ~ 145 (345)
T 1nvm_A 145 M 145 (345)
T ss_dssp S
T ss_pred C
Confidence 4
No 50
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=35.10 E-value=63 Score=28.06 Aligned_cols=40 Identities=5% Similarity=0.205 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHcCccEEEEeCCc-----------CcHHHHHHHHHHcCCce
Q 020004 177 NPAAIIRKLKDVGLHGLEVYRSD-----------GKLVAYTDLADTYGLLK 216 (332)
Q Consensus 177 ~~~~li~~l~~~gldGIEv~~~~-----------~~~~~~~~lA~~~~L~~ 216 (332)
.....++.+++.|++|||++... ...+.+.++++++||-+
T Consensus 13 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 63 (285)
T 1qtw_A 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTS 63 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCG
T ss_pred CHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 45677888889999999996321 12356778899999963
No 51
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=35.08 E-value=39 Score=29.46 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=7.5
Q ss_pred HHHHHHHcCccEEEEe
Q 020004 181 IIRKLKDVGLHGLEVY 196 (332)
Q Consensus 181 li~~l~~~gldGIEv~ 196 (332)
.++..+++|++|||++
T Consensus 28 ~l~~a~~~G~~~vEl~ 43 (264)
T 1yx1_A 28 FLPLLAMAGAQRVELR 43 (264)
T ss_dssp GHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCEEEEE
Confidence 3344444455555553
No 52
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=34.95 E-value=77 Score=27.47 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=28.3
Q ss_pred hHHHHHHHHHcCccEEEEeCCc-----------CcHHHHHHHHHHcCC-ceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD-----------GKLVAYTDLADTYGL-LKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~-----------~~~~~~~~lA~~~~L-~~tg 218 (332)
....++...+.|+|+||++... ...+.+.++++++|| .++.
T Consensus 16 ~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 68 (270)
T 3aam_A 16 VAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLPAVI 68 (270)
T ss_dssp HHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 3456777788899999997521 123566778889998 5543
No 53
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=33.82 E-value=1.8e+02 Score=25.40 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHc-CCce
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTY-GLLK 216 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~-~L~~ 216 (332)
.+..+.++.+.+.+=++|+-... .....++++.+.+.|++.||+-.... ..+.+.++++++ ++.+
T Consensus 5 ~~~~~~~~~l~~~~ii~vir~~~-~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~v 71 (224)
T 1vhc_A 5 YTTQQIIEKLRELKIVPVIALDN-ADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLI 71 (224)
T ss_dssp CCHHHHHHHHHHHCEEEEECCSS-GGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEE
T ss_pred cchHHHHHHHHHCCeEEEEeCCC-HHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEE
Confidence 46678899999999899887642 22234567788889999999976443 344555688877 4443
No 54
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=31.49 E-value=37 Score=30.38 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCccEEEEeCCc------CcHHHHHHHHHHcCCceeecC
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD------GKLVAYTDLADTYGLLKLGGS 220 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~------~~~~~~~~lA~~~~L~~tgGS 220 (332)
... ++.+.+.|++|||+.... .....+.++++++||-+++..
T Consensus 39 l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~ 86 (309)
T 2hk0_A 39 GPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTAGI 86 (309)
T ss_dssp HHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEEec
Confidence 356 888889999999997532 134567788999999888744
No 55
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=30.96 E-value=1.5e+02 Score=25.69 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeCCCCC---CChHHHHHHHHH-cCccEEEEeCCcCcHHHHHHHHHHcCCcee
Q 020004 149 SEPLAEVAVQLIHRTGGLAVLAHPWAL---KNPAAIIRKLKD-VGLHGLEVYRSDGKLVAYTDLADTYGLLKL 217 (332)
Q Consensus 149 ~~~~~eeaI~~I~~aGGiaVlAHP~~~---~~~~~li~~l~~-~gldGIEv~~~~~~~~~~~~lA~~~~L~~t 217 (332)
+-..+.++++.++++|=.+++ ||+.. .....-++.|+. .+.|||=--+ ....+.|++.||..+
T Consensus 39 ~i~~l~~~v~~lk~~~K~v~V-h~Dli~Gls~d~~ai~fL~~~~~pdGIIsTk-----~~~i~~Ak~~gL~tI 105 (192)
T 3kts_A 39 HVAQLKALVKYAQAGGKKVLL-HADLVNGLKNDDYAIDFLCTEICPDGIISTR-----GNAIMKAKQHKMLAI 105 (192)
T ss_dssp ETTTHHHHHHHHHHTTCEEEE-EGGGEETCCCSHHHHHHHHHTTCCSEEEESC-----HHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHHcCCeEEE-ecCchhccCCcHHHHHHHHhCCCCCEEEeCc-----HHHHHHHHHCCCeEE
Confidence 346789999999999988888 99743 233455666665 3788864333 245677888887553
No 56
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=30.83 E-value=62 Score=29.27 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHHHHHHHcCccEEEEeCCc----------CcHHHHHHHHHHcCCc---eeec
Q 020004 180 AIIRKLKDVGLHGLEVYRSD----------GKLVAYTDLADTYGLL---KLGG 219 (332)
Q Consensus 180 ~li~~l~~~gldGIEv~~~~----------~~~~~~~~lA~~~~L~---~tgG 219 (332)
..++.++++|++|||+.... .....+.++++++||- +++.
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~~ 87 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKISTN 87 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEEE
Confidence 67788889999999997542 1234567888999998 7764
No 57
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=30.59 E-value=71 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHcCccEEEEeCCcC-----------cHHHHHHHHHHcCCceee
Q 020004 181 IIRKLKDVGLHGLEVYRSDG-----------KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 181 li~~l~~~gldGIEv~~~~~-----------~~~~~~~lA~~~~L~~tg 218 (332)
.++.+++.|++|||++.... ..+.+.+.++++||-+++
T Consensus 40 ~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~ 88 (316)
T 3qxb_A 40 AGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIES 88 (316)
T ss_dssp HHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEEE
Confidence 34556789999999975421 234667888999998765
No 58
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=30.15 E-value=1.4e+02 Score=26.35 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=30.1
Q ss_pred hHHHHHHHHHcCccEEEEeCCc-----------CcHHHHHHHHHHcCC-ceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRSD-----------GKLVAYTDLADTYGL-LKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~~-----------~~~~~~~~lA~~~~L-~~tg 218 (332)
....++...+.|+|+||++... ...+.+.++++++|| .++.
T Consensus 20 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 72 (303)
T 3aal_A 20 LLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVV 72 (303)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 4567788889999999995321 135677888999999 4554
No 59
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=29.44 E-value=85 Score=29.77 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHcCCeE--EEeCCCC
Q 020004 152 LAEVAVQLIHRTGGLA--VLAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGia--VlAHP~~ 174 (332)
....+++.||+.|+.+ =|.|+++
T Consensus 92 ~~k~l~~avh~~G~~i~~QL~H~Gr 116 (376)
T 1icp_A 92 AWKPIVDAVHAKGGIFFCQIWHVGR 116 (376)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeEEEEeecCCC
Confidence 3467788899999954 4678553
No 60
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=29.13 E-value=1.1e+02 Score=28.92 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 80 ~~k~l~~avH~~G~~i~~QL~H~Gr 104 (362)
T 4ab4_A 80 GWNNVTKAVHAAGGRIFLQLWHVGR 104 (362)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCEEEEEeccCcc
Confidence 45778899999999644 677764
No 61
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=29.10 E-value=72 Score=29.97 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 82 ~~~~~~~~vh~~G~~i~~QL~H~Gr 106 (343)
T 3kru_A 82 ELKKIVDICKANGAVMGIQLAHAGR 106 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHhcCCceEeeehhhccC
Confidence 45678999999999655 577664
No 62
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=28.57 E-value=63 Score=31.28 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 105 ~~k~l~~avh~~G~~i~~QL~H~Gr 129 (419)
T 3l5a_A 105 GLTNMASTMKQHGSLAIIQLAHAGR 129 (419)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCC
Confidence 56789999999999655 578775
No 63
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=28.36 E-value=91 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCe--EEEeCCCC
Q 020004 152 LAEVAVQLIHRTGGL--AVLAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGi--aVlAHP~~ 174 (332)
....+++.||+.|+. +=|.|.++
T Consensus 84 ~~~~~~~~vh~~g~~i~~QL~h~Gr 108 (338)
T 1z41_A 84 GFAKLTEQVKEQGSKIGIQLAHAGR 108 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEecCCCc
Confidence 346788899999985 55788653
No 64
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.89 E-value=1.8e+02 Score=26.41 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCc-----------------HHHHHHHHHHcCC
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK-----------------LVAYTDLADTYGL 214 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~-----------------~~~~~~lA~~~~L 214 (332)
+.+++++.+.+..++.+.+|- .+ ...++...++|++.|-++-+..+ .....++|+++|+
T Consensus 63 d~~~~~~~~~~~~~~~~~~l~---~~-~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~ 138 (302)
T 2ftp_A 63 GSAEVFAGIRQRPGVTYAALA---PN-LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQV 138 (302)
T ss_dssp THHHHHHHSCCCTTSEEEEEC---CS-HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHhhhcCCCEEEEEe---CC-HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 556777777666788887775 12 35667777899999998654421 1345678999998
Q ss_pred cee
Q 020004 215 LKL 217 (332)
Q Consensus 215 ~~t 217 (332)
.+.
T Consensus 139 ~V~ 141 (302)
T 2ftp_A 139 RVR 141 (302)
T ss_dssp EEE
T ss_pred eEE
Confidence 773
No 65
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=26.78 E-value=1.7e+02 Score=30.70 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeCCCCCC------ChHHHHHHHHHcCccEEEEeCC-----cC-----c--H---HHHHH
Q 020004 149 SEPLAEVAVQLIHRTGGLAVLAHPWALK------NPAAIIRKLKDVGLHGLEVYRS-----DG-----K--L---VAYTD 207 (332)
Q Consensus 149 ~~~~~eeaI~~I~~aGGiaVlAHP~~~~------~~~~li~~l~~~gldGIEv~~~-----~~-----~--~---~~~~~ 207 (332)
...+++|+++..++-|=-+++=|-.... ..+..++.+.+.|+.||=+=.= .. + . ..+.+
T Consensus 416 pd~Dl~eL~~YA~sKGV~iilw~~t~~~~~n~e~~~d~~f~~~~~~Gv~GVKvdF~g~~~~r~~~h~~Q~~v~~Y~~i~~ 495 (738)
T 2d73_A 416 PDFDVKEIHRYAARKGIKMMMHHETSASVRNYERHMDKAYQFMADNGYNSVKSGYVGNIIPRGEHHYGQWMNNHYLYAVK 495 (738)
T ss_dssp TTCCHHHHHHHHHHTTCEEEEEEECTTBHHHHHHHHHHHHHHHHHTTCCEEEEECCSSCBSTTCCTTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEcCCCchhhHHHHHHHHHHHHHHcCCCEEEeCccccCcCCcccccchHHHHHHHHHHH
Confidence 4467999999999976434444433321 1234566678899999999332 21 1 2 24456
Q ss_pred HHHHcCCceeecCCCCCCCCC
Q 020004 208 LADTYGLLKLGGSDYHGRGGH 228 (332)
Q Consensus 208 lA~~~~L~~tgGSD~Hg~~~~ 228 (332)
-|.+|+|++ ||||..++
T Consensus 496 ~AA~~~LmV----nfHg~~kP 512 (738)
T 2d73_A 496 KAADYKIMV----NAHEATRP 512 (738)
T ss_dssp HHHHTTCEE----EETTSCCC
T ss_pred HHHHcCcEE----EccCCcCC
Confidence 688999998 89998654
No 66
>3jpz_A Lombricine kinase; mixed alpha / beta, transferase; 1.95A {Urechis caupo} PDB: 3jq3_A*
Probab=26.58 E-value=43 Score=32.12 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=57.3
Q ss_pred ccccccCChHHHHHHhccccccchhHHHHHHhhhcC---CCC-CCCcchhhhccccc-cCCCCccCCCchhhhhhhhhcc
Q 020004 232 ELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYAD---EPS-DSNLSHITRYGRGK-MLKRNYPLNCGKGLVDECLSLW 306 (332)
Q Consensus 232 ~lG~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 306 (332)
.+|.+.-.++.|+-|. +.+..-|++...+|.. .|+ |+|.+++. .|... ..-=.|...++..|-..+++.+
T Consensus 58 ~vG~~AgD~esY~vF~----~lfdpvI~~~H~g~~~~~~h~~~d~~~~~l~-~~~~D~~~VlSSRVRlaRNl~g~~FP~~ 132 (366)
T 3jpz_A 58 CIGLIAGDEESYEVFK----ELFDAVINEKHKGFGPNDSQPAPDLDASKLV-GGQFDEKYVKSCRIRTGRGIRGLCYPPS 132 (366)
T ss_dssp CCCCCCSSTTHHHHTH----HHHHHHHHHHTTSCCTTCCCCCCCCCGGGCS-SCBCCTTTEEEEEEEEEECBTTSCCTTT
T ss_pred CCCceeCChHHHHHHH----HHHhHHHHHHhCCCCCcCCCCCCCCCccccc-CCCCCCceEEEeecceeeecCCCCCCCc
Confidence 5888877778888888 5565667888777753 355 78877663 23221 1112456678889999999999
Q ss_pred cChhhhhhhhHH
Q 020004 307 LTNEERQSAEFE 318 (332)
Q Consensus 307 ~~~~~~~~~~~~ 318 (332)
+|.+++..+|-.
T Consensus 133 ~s~~e~~~ve~~ 144 (366)
T 3jpz_A 133 CTRGERREVERV 144 (366)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999887754
No 67
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=26.05 E-value=85 Score=31.90 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCCeE--EEeCCCC
Q 020004 152 LAEVAVQLIHRTGGLA--VLAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGia--VlAHP~~ 174 (332)
...++++.||+.|+.+ =|.|+++
T Consensus 90 ~~~~~~~~vh~~g~~i~~Ql~h~Gr 114 (690)
T 3k30_A 90 ALKRIADAIHEGGGLAGIELAHNGM 114 (690)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEccCCcc
Confidence 4578899999999854 4688653
No 68
>3ju5_A Arginine kinase, AK; reciprocating mechanism, negative cooperativity, phosphagen kinase, ATP-binding, nucleotide-binding, transferase; HET: MSE; 1.75A {Apostichopus japonicus} PDB: 3ju6_A*
Probab=25.66 E-value=47 Score=31.95 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=57.6
Q ss_pred ccccccCChHHHHHHhccccccchhHHHHHHhhhc---CCCCCCCcchhhhccccc-cCCCCccCCCchhhhhhhhhccc
Q 020004 232 ELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYA---DEPSDSNLSHITRYGRGK-MLKRNYPLNCGKGLVDECLSLWL 307 (332)
Q Consensus 232 ~lG~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 307 (332)
.+|.+.-.++.|+-|. +.+..-|++...+|. +.|+|+|.+++. .|... ..-=.|...++..|-..+++.++
T Consensus 62 ~vG~~AgD~esY~vF~----~lfdpvI~~~H~g~~~~~~h~~d~~~~~l~-~~~~Dp~~VlSSRVRlaRNl~g~~FP~~~ 136 (370)
T 3ju5_A 62 HLGLLAGDEETYTVFA----DLFDPVIEEYHNGFKKTDNHKTDLDASKIL-DDVLDPAYVISSRVRTGRNIRGMALSPHV 136 (370)
T ss_dssp SSCCCCSSTTHHHHTH----HHHHHHHHHHTTSCCTTCCCCCCCCGGGSC-CCBCCTTTEEEEEEEEEECBTTSCCTTTC
T ss_pred CCCceeCChHHHHHHH----HHhhHHHHHHhCCCCCCcCCCCCCChhhcc-CCCCCCceEEEeeeeeeeecCCCCCCCcC
Confidence 5888877778888888 555556777776664 446788877654 22221 11224567788889999999999
Q ss_pred ChhhhhhhhHH
Q 020004 308 TNEERQSAEFE 318 (332)
Q Consensus 308 ~~~~~~~~~~~ 318 (332)
|.+++..+|-.
T Consensus 137 s~~e~~~ve~~ 147 (370)
T 3ju5_A 137 CRSERRAIEKM 147 (370)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999887754
No 69
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=25.05 E-value=78 Score=29.07 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCC
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 221 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD 221 (332)
|...++++.+++.+|+.++-|... ...+++.+.+.|+|++-+-+. .+...+.+ .+++.+.||=|
T Consensus 217 p~~k~i~~~i~~~~g~~~i~~~~g---~~~~l~~l~~~g~d~~~~d~~-~dl~~~~~---~~~~~l~Gn~d 280 (338)
T 2eja_A 217 PYVNYLISELKDFSDTPVIYFFRG---SSSFIDLAVDYRADALSVDWS-VDIPELFK---IYDKGFQGNLE 280 (338)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEESS---HHHHHHHHTTSCCSEEECCTT-SCHHHHHH---HCCSEEECCBC
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCC---cHHHHHHHHHcCCCEEEeCCC-CCHHHHHH---hCCeEEEECCC
Confidence 455778899998756888888742 256888899999998876432 33333322 22566666655
No 70
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.88 E-value=45 Score=24.57 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhC-----CCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCC
Q 020004 82 RAKDMILKLNKL-----KLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 128 (332)
Q Consensus 82 r~~~iv~~L~~~-----G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~ 128 (332)
|-++|++.|++. |++.+..++.+..|-.. .+--.-..+|.++|++.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~-~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSI-YQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCH-HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCH-HHHHHHHHHHHHCCcEE
Confidence 344566666655 89999999988876421 11112234555677653
No 71
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=24.36 E-value=68 Score=33.51 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHcCCeEEE
Q 020004 152 LAEVAVQLIHRTGGLAVL 169 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVl 169 (332)
.+.+.|+++|++|=-|..
T Consensus 292 ~~k~lvd~~H~~gKeAmm 309 (759)
T 2zuv_A 292 NVKQLADMSHAAGKEAMM 309 (759)
T ss_dssp HHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCceeEE
Confidence 457899999999976655
No 72
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=24.26 E-value=1.4e+02 Score=26.80 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHcC-CeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCc-CcHHHHHHHHHHcCC
Q 020004 155 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGL 214 (332)
Q Consensus 155 eaI~~I~~aG-GiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~-~~~~~~~~lA~~~~L 214 (332)
++|+.+++.. -+.+-+|-. ..++...++.+.++|.|.|=+..-. .......+.++++|+
T Consensus 75 ~~v~~lr~~~p~~~ldvHLm-v~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~ 135 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLM-VKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGI 135 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEE-CSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCCeEEEEEe-eCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCC
Confidence 4666666655 555566543 2234455666666666666654321 233445555565554
No 73
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=24.25 E-value=92 Score=31.04 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=39.0
Q ss_pred HHHHHHHHcCccEEEE--eCCc--------Cc---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccc-ccCC
Q 020004 180 AIIRKLKDVGLHGLEV--YRSD--------GK---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 239 (332)
Q Consensus 180 ~li~~l~~~gldGIEv--~~~~--------~~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 239 (332)
.-++.|+.+|+|||+| |.+. .+ -..+.+++++.||-+-.-=-||.-+. .+|. |.||
T Consensus 38 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGg----NVGD~~~IP 107 (498)
T 1fa2_A 38 DELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGG----NVGDAVFIP 107 (498)
T ss_dssp HHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCC----CTTCCCCBC
T ss_pred HHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCC----CCCCccccc
Confidence 4567789999999988 3321 12 24667889999997766666998654 4665 5566
No 74
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=23.67 E-value=2e+02 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHcCCeEEEeCCCCC---CChHHHHHHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCce
Q 020004 151 PLAEVAVQLIHRTGGLAVLAHPWAL---KNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLK 216 (332)
Q Consensus 151 ~~~eeaI~~I~~aGGiaVlAHP~~~---~~~~~li~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~ 216 (332)
..+.++++.++++ |..|+=||... .....-+..|...+.|||=--. ......|+++||..
T Consensus 43 ~~L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGIIsTk-----~~~i~~Akk~GL~t 105 (188)
T 1vkf_A 43 LNLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITIK-----PKNYVVAKKNGIPA 105 (188)
T ss_dssp TTHHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEESC-----HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHHHhcCCCEEEcCc-----HHHHHHHHHcCCEE
Confidence 4689999999999 79999999743 2233445555555788864333 24567788888754
No 75
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=23.38 E-value=3.1e+02 Score=23.89 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcCc-HHHHHHHHHHc
Q 020004 153 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK-LVAYTDLADTY 212 (332)
Q Consensus 153 ~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~~-~~~~~~lA~~~ 212 (332)
..+.++.+.+.+=++|+-... .....++++.+.+.|++.||+-..... .+.+.++++++
T Consensus 16 ~~~~~~~l~~~~ii~V~r~~~-~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~ 75 (225)
T 1mxs_A 16 AARIDAICEKARILPVITIAR-EEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQR 75 (225)
T ss_dssp HHHHHHHHHHHSEEEEECCSC-GGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEEEeCCC-HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhC
Confidence 456778888888888887642 222346777888889999999764432 33445577776
No 76
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=22.75 E-value=1.3e+02 Score=29.12 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCCeEE--EeCCCC
Q 020004 152 LAEVAVQLIHRTGGLAV--LAHPWA 174 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaV--lAHP~~ 174 (332)
....+++.||+.|+.++ |.|+++
T Consensus 93 ~~k~l~~avH~~G~~i~~QL~H~Gr 117 (407)
T 3tjl_A 93 AWKVITDKVHANGSFVSTQLIFLGR 117 (407)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCC
Confidence 45678899999999655 577654
No 77
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=22.29 E-value=80 Score=29.60 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=29.6
Q ss_pred hHHHHHHHHHcCccEEEEe----CCcC--------cHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVY----RSDG--------KLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~----~~~~--------~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+.+.|++|||+. .+.. ..+.+.++++++||-+++
T Consensus 35 ~~e~l~~aa~~G~~~vEl~~~~~~p~~~~~~e~~~~~~~l~~~l~~~GL~i~~ 87 (387)
T 1bxb_A 35 PVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDETGLKVPM 87 (387)
T ss_dssp HHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHHHTCBCCE
T ss_pred HHHHHHHHHHhCCCEEEecCcccCCCCCChhhhHHHHHHHHHHHHHhCCEEEE
Confidence 4567777888899999997 4431 235677889999997753
No 78
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=21.54 E-value=72 Score=28.84 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=43.1
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCC-eEEEeCCCCCCC------hHHHHHHHHHcCccEEEEeC-CcCcH
Q 020004 131 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG-LAVLAHPWALKN------PAAIIRKLKDVGLHGLEVYR-SDGKL 202 (332)
Q Consensus 131 ~~af~~~l~~g~~~yv~~~~~~~eeaI~~I~~aGG-iaVlAHP~~~~~------~~~li~~l~~~gldGIEv~~-~~~~~ 202 (332)
+.+-.+-|.+| .++..+++.+++.-. ++++- +.|.| .+..+++++++|+||+=+-. |.++.
T Consensus 62 q~a~~rAL~~g---------~~~~~~~~~~~~~r~~~Pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~ 130 (252)
T 3tha_A 62 ADAAKIALDQG---------VDIHSVFELLARIKTKKALVF--MVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEES 130 (252)
T ss_dssp HHHHHHHHHTT---------CCHHHHHHHHHHCCCSSEEEE--ECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGC
T ss_pred HHHHHHHHHCC---------CCHHHHHHHHHHHhcCCCEEE--EeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 44555555544 577777777777643 22221 12322 24566777788888876654 22445
Q ss_pred HHHHHHHHHcCC
Q 020004 203 VAYTDLADTYGL 214 (332)
Q Consensus 203 ~~~~~lA~~~~L 214 (332)
..+.+.|+++||
T Consensus 131 ~~~~~~~~~~Gl 142 (252)
T 3tha_A 131 DDLIKECERYNI 142 (252)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 667777888876
No 79
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=21.13 E-value=2.2e+02 Score=25.55 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEe
Q 020004 152 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY 196 (332)
Q Consensus 152 ~~eeaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~ 196 (332)
+..++++.+.+..++.+.+|- .+ ...++...++|++.|=++
T Consensus 59 ~~~e~~~~i~~~~~~~v~~l~---~n-~~~i~~a~~~G~~~V~i~ 99 (295)
T 1ydn_A 59 DSREVMAGIRRADGVRYSVLV---PN-MKGYEAAAAAHADEIAVF 99 (295)
T ss_dssp THHHHHHHSCCCSSSEEEEEC---SS-HHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEe---CC-HHHHHHHHHCCCCEEEEE
Confidence 455666666655566666653 12 245566667788877776
No 80
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=20.99 E-value=5.1e+02 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCC-CHHHHHHHHhh
Q 020004 78 GRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE-NLKQAFARYLY 139 (332)
Q Consensus 78 ~R~~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~-~~~~af~~~l~ 139 (332)
.|.+|..+++++|....+.++.+-.......+ ---.-||.+|...|+.+ +..++.+-|+.
T Consensus 134 ~~~~~il~~~~~lag~~l~~d~~v~~SE~~t~--~rN~AiA~~lks~g~i~~dv~~~Ld~Yf~ 194 (310)
T 1u60_A 134 QRWQRILHIQQQLAGEQVALSDEVNQSEQTTN--FHNRAIAWLLYSAGYLYCDAMEACDVYTR 194 (310)
T ss_dssp HHHHHHHHHHHHHHCTTCEECHHHHHHHHTTC--HHHHHHHHHHHHHTCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHhhh--HHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 34445555555555444444433332222221 11234677777889887 66777666654
No 81
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=20.97 E-value=60 Score=30.58 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=30.1
Q ss_pred hHHHHHHHHHcCccEEEEeCC----c--------CcHHHHHHHHHHcCCceee
Q 020004 178 PAAIIRKLKDVGLHGLEVYRS----D--------GKLVAYTDLADTYGLLKLG 218 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~~----~--------~~~~~~~~lA~~~~L~~tg 218 (332)
..+.++.+++.|++|||++.. . ...+.+.++++++||-+++
T Consensus 35 l~e~l~~aa~~G~d~VEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~ 87 (394)
T 1xla_A 35 PVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPM 87 (394)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBCCE
T ss_pred HHHHHHHHHHcCCCEEEecCCccCcccCCchhhHHHHHHHHHHHHHcCCeEEE
Confidence 556778888899999999752 1 1234667889999997754
No 82
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=20.84 E-value=2.4e+02 Score=24.37 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCChHHHHHHHHHcCccEEEEeCCcC-cHHHHHHHHHHcC
Q 020004 155 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYG 213 (332)
Q Consensus 155 eaI~~I~~aGGiaVlAHP~~~~~~~~li~~l~~~gldGIEv~~~~~-~~~~~~~lA~~~~ 213 (332)
+.++.+.+.+=++|+-.... ....++++.+.+.|++.||+-.... ..+.+.+++++++
T Consensus 8 ~~~~~l~~~~~i~v~r~~~~-~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~ 66 (214)
T 1wbh_A 8 SAESILTTGPVVPVIVVKKL-EHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVP 66 (214)
T ss_dssp CHHHHHHSCSEEEEECCSSG-GGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCc
Confidence 46677888888899876432 2234577788888999999976443 3345555777773
No 83
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=20.23 E-value=75 Score=29.86 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=28.4
Q ss_pred hHHHHHHHHHcCccEEEEe----CCcC--------cHHHHHHHHHHcCCcee
Q 020004 178 PAAIIRKLKDVGLHGLEVY----RSDG--------KLVAYTDLADTYGLLKL 217 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~----~~~~--------~~~~~~~lA~~~~L~~t 217 (332)
..+.++.+++.|+++||+. .+.. ..+.+.++++++||-++
T Consensus 35 ~~e~l~~aa~~G~~~VEl~~~~l~p~~~~~~~~~~~~~~l~~~l~~~GL~i~ 86 (393)
T 1xim_A 35 PVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVP 86 (393)
T ss_dssp HHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHhCCCEEEeecccCCCccccccccHHHHHHHHHHHHHhCCEEE
Confidence 4566777778899999987 4432 23456788899999774
No 84
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=20.15 E-value=64 Score=30.26 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=30.3
Q ss_pred hHHHHHHHHHcCccEEEEeC----Cc--------CcHHHHHHHHHHcCCceeec
Q 020004 178 PAAIIRKLKDVGLHGLEVYR----SD--------GKLVAYTDLADTYGLLKLGG 219 (332)
Q Consensus 178 ~~~li~~l~~~gldGIEv~~----~~--------~~~~~~~~lA~~~~L~~tgG 219 (332)
+.+.++.+++.|++|||++. +. .....+.++++++||-+++-
T Consensus 35 ~~e~l~~aa~~G~~~VEl~~~~~~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~~ 88 (386)
T 1muw_A 35 PVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMA 88 (386)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEE
T ss_pred HHHHHHHHHHcCCCEEEeeCCCCCcccCcccccHHHHHHHHHHHHHhCCeEEEE
Confidence 45677788888999999975 21 12346678899999977653
Done!