BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020005
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S81|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|C Chain C, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|D Chain D, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
Length = 268
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 38/275 (13%)
Query: 60 SKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQL---SGEENDFPFLLC 116
S G++ F S+A+ +T+GI+GG +T ++L K V+L S ++ P ++
Sbjct: 9 SGVDLGTENLYFQSNAM---KHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVS 65
Query: 117 SDPLLNKE---LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPC 173
S P + LLS S + L R LE AGA CIV+PC
Sbjct: 66 SIPDIPDRTACLLSGGPSPY------------------RYLERYLHMLEDAGAECIVIPC 107
Query: 174 HLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233
+ +H W D++ + + + ++ S +G+LA NA L G YQ
Sbjct: 108 NTAHYWFDDLQNVAKARMISILDATLGDIPP---------SARHVGLLATNATLATGLYQ 158
Query: 234 EKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILAS 293
+K G ++ P+ A + ++ A+ L R D A+ LL + L+ R +I+
Sbjct: 159 KKALARGLTLIQPEDAG-QALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGC 217
Query: 294 DDMQXXXXXXXXXXK-KCIDPMDALARSTIKWVKS 327
++ ID +L R+ I+W +S
Sbjct: 218 TEIPLIVAGHERAIACPMIDSTASLVRAAIRWYES 252
>pdb|3S7Z|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium Complexed With Succinate
pdb|3S7Z|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium Complexed With Succinate
Length = 268
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 35/254 (13%)
Query: 81 NTVGIVGGASVDSTLNLLGKLVQL---SGEENDFPFLLCSDPLLNKE---LLSHDRSSFS 134
+T+GI+GG +T + L K V+L S ++ P ++ S P + LLS S +
Sbjct: 27 HTIGILGGXGPAATADXLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPY- 85
Query: 135 SLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194
L R LE AGA CIV+PC+ +H W D+ +V
Sbjct: 86 -----------------RYLERYLHXLEDAGAECIVIPCNTAHYWFDD--------LQNV 120
Query: 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHT 254
++ + +A + + S +G+LA NA L G YQ+K G ++ P+ A +
Sbjct: 121 AKARXISILDATLGDIPP-SARHVGLLATNATLATGLYQKKALARGLTLIQPEDAG-QAL 178
Query: 255 LIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQXXXXXXXXXXK-KCIDP 313
+ A+ L R D A+ LL + L+ R +I ++ ID
Sbjct: 179 VXQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIXGCTEIPLIVAGHERAIACPXIDS 238
Query: 314 MDALARSTIKWVKS 327
+L R+ I+W +S
Sbjct: 239 TASLVRAAIRWYES 252
>pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
pdb|1JFL|B Chain B, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
Length = 228
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 45/255 (17%)
Query: 81 NTVGIVGGASVDSTLNLLGKLVQLSGEEND--FP-FLLCSDPLLNKELLSHDRSSFSSLN 137
T+GI+GG +T L ++V + + D P ++ ++P + DR+++
Sbjct: 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIP------DRTAY---- 51
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
G G LI R LE+ GA I+MPC+ +H + +++ K +P + + E
Sbjct: 52 ILGKGEDPRPQLIWTAKR-----LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEE 106
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIP 257
AK++KE K + G+LA + +G Y+++ G E++ P + + +
Sbjct: 107 TAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRG 158
Query: 258 ALDALNRKDVEGARNLLRIALQVLLVRAVN---------TVILASDDMQXXXXXXXXXXK 308
+ + +++ R LL ++L R +V+L DD++
Sbjct: 159 IYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLKV---------- 208
Query: 309 KCIDPMDALARSTIK 323
IDPMD +A +K
Sbjct: 209 PLIDPMDVIAEVAVK 223
>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
pdb|2DX7|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
Length = 228
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 81 NTVGIVGGASVDSTLNLLGKLVQLSGEEND--FP-FLLCSDPLLNKELLSHDRSSFSSLN 137
T+GI+GG +T L ++V + + D P ++ ++P + DR+++
Sbjct: 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQI------PDRTAY---- 51
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
G G LI R LE+ GA I+MP + +H + +++ K +P + + E
Sbjct: 52 ILGKGEDPRPQLIWTAKR-----LEECGADFIIMPANTAHAFVEDIRKAIKIPIISMIEE 106
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIP 257
AK++KE K + G+LA + +G Y+++ G E++ P + + +
Sbjct: 107 TAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRG 158
Query: 258 ALDALNRKDVEGARNLLRIALQVLLVRAVN---------TVILASDDMQXXXXXXXXXXK 308
+ + +++ R LL ++L R +V+L DD++
Sbjct: 159 IYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLKV---------- 208
Query: 309 KCIDPMDALARSTIK 323
IDPMD +A +K
Sbjct: 209 PLIDPMDVIAEVAVK 223
>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
pdb|2ZSK|B Chain B, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
Length = 226
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 83 VGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGG 142
+GI+GG + +STL K +++S E+ + F EL+ + +F G
Sbjct: 4 IGIIGGTTPESTLYYYKKYIEISREKFEKYFY--------PELIIYS-INFKEFFQNPEG 54
Query: 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202
+ +++ + LE+AGA I + H+ D+V + +VP + + + VA+E+
Sbjct: 55 WEGRKKILINAAKA----LERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEI 110
Query: 203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEH 253
+ ++ ++ +L +TA FY + L+ +G EVV+P+ E
Sbjct: 111 LKRGVR--------KVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEE 153
>pdb|3OJC|A Chain A, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
pdb|3OJC|B Chain B, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
pdb|3OJC|C Chain C, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
pdb|3OJC|D Chain D, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
Length = 231
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 83 VGIVGGASVDSTLNLLGKL-----VQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLN 137
+G++GG S +ST+ + QL G L S ++ L S D L
Sbjct: 5 LGLIGGXSWESTIPYYRXINQHVKAQLGG--------LHSAKII---LYSVDFHEIEQLQ 53
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
KG D + L + L+ AGA IV+ + H D++ C +P LH+++
Sbjct: 54 AKG-----DWQTAAQLLSNAAISLKHAGAEVIVVCTNTXHKVADDIEAACGLPLLHIADA 108
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL-QHEGFEVVLPDKATME 252
A ++K+ + +IG+L GFY+ +L + G EV+ PD E
Sbjct: 109 TAVQIKQQGID--------KIGLLGTRYTXEQGFYRGRLTEKHGIEVITPDDTDRE 156
>pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
Length = 254
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAK 200
G++ D++I +L FL+ G IV+ C+ + + + + K +VP V E K
Sbjct: 40 GIRSKDTIIRYSLECAG-FLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVK 98
Query: 201 E-LKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEV 243
E LK++ K +IGV+ A + +G YQ KL+ G +V
Sbjct: 99 EALKKSRNK--------KIGVIGTPATVKSGAYQRKLEEGGADV 134
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLP-DKATMEHTLIPALDA 261
K +P E G PL V+ + I EG+ V P D+A ME L
Sbjct: 107 KAGTARPWEGGKPLGWRVVGPSPIPF---------DEGYPVPEPLDEAGMERIL------ 151
Query: 262 LNRKDVEGARNLLRIALQVL 281
+ VEGAR LR QV+
Sbjct: 152 --QAFVEGARRALRAGFQVI 169
>pdb|1IU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of Aspartate
Racemase From Pyrococcus Horikoshii Ot3
Length = 111
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTL 255
E AK++KE K + G+LA + +G Y+++ G E++ P + + +
Sbjct: 3 EETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVM 54
Query: 256 IPALDALNRKDVEGARNLLRIALQVLLVRAVN---------TVILASDDMQ 297
+ + +++ R LL ++L R +V+L DD++
Sbjct: 55 RGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLK 105
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 80 ANTVGIVGGASVDSTLNLLGKLVQL 104
A+ +G+ GG S+DS+L +L L QL
Sbjct: 119 ASLIGVEGGHSIDSSLGVLRALYQL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,616,948
Number of Sequences: 62578
Number of extensions: 325190
Number of successful extensions: 794
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 11
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)