BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020005
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32960|RACX_BACSU Probable amino-acid racemase OS=Bacillus subtilis (strain 168)
GN=racX PE=2 SV=2
Length = 227
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 83 VGIVGGASVDSTLNLLGKLV----QLSGEEND--FPFLL---CSDPLLNKELLSHDRSSF 133
+GI+ G ST + K++ +L G ND +P ++ C P + HD
Sbjct: 2 IGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKK 61
Query: 134 SSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193
+ ++ G V+L EK G I +PC+ +H++++E+ + SVP LH
Sbjct: 62 AIID---GAVKL----------------EKTGVDFIALPCNTAHVYYEEIQQALSVPMLH 102
Query: 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPD 247
+ E KE+ K + VL + + YQ+ L+ G EV+ D
Sbjct: 103 IVEETIKEIPHPAKKAV---------VLGTEPTIQSAIYQKVLKGNGQEVIHKD 147
>sp|P29079|RACD_ENTFC Aspartate racemase OS=Enterococcus faecium PE=1 SV=1
Length = 243
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 169 IVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228
IV+ C+ +H + +E+ +P LH+ A EL + + R+ +L +
Sbjct: 80 IVLTCNTAHYFFEELQAATDIPILHMPREAANEL-------VRQHTTGRVAILGTEGSMK 132
Query: 229 AGFYQEKLQHEGFEVVLPDKATME 252
AG Y+ ++++ GFE V+PD A E
Sbjct: 133 AGIYEREVKNLGFETVIPDTALQE 156
>sp|H8L901|RACD_ENTFU Aspartate racemase OS=Enterococcus faecium (strain Aus0004)
GN=EFAU004_01689 PE=1 SV=1
Length = 243
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 169 IVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228
IV+ C+ +H + +E+ +P LH+ A EL + + R+ +L +
Sbjct: 80 IVLTCNTAHYFFEELQAATDIPILHMPREAANEL-------VRQHTTGRVAILGTEGSMK 132
Query: 229 AGFYQEKLQHEGFEVVLPDKATME 252
AG Y+ ++++ GFE V+PD A E
Sbjct: 133 AGIYEREVKNLGFETVIPDTALQE 156
>sp|P32968|YPNL_PECCC Uncharacterized protein in pnlA 3'region (Fragment)
OS=Pectobacterium carotovorum subsp. carotovorum PE=3
SV=1
Length = 150
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 179 WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
W +++ + C + + + + +K AN R+G+LA A + A YQ+ L
Sbjct: 1 WFNDLKQQCRAEMISIIDVTCQAIKHANTT--------RVGLLATTATVKARIYQDNLIT 52
Query: 239 EGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQD 298
+ + PD A +H ++ ++ A D+ GA +LL LL V +IL ++
Sbjct: 53 DNIDCYTPDDAD-QHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPL 111
Query: 299 LLPPD---DPLLKKCIDPMDALARSTIKW 324
+L + P + +D + L + T++W
Sbjct: 112 ILEQEVRTSP--QHYVDATEELIKKTVEW 138
>sp|P03813|YGEA_ECOLI Uncharacterized protein YgeA OS=Escherichia coli (strain K12)
GN=ygeA PE=1 SV=1
Length = 230
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGV 220
L++AGA IV+ + H D + C++PFLH+++ + + A M R+ +
Sbjct: 71 LQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMT--------RVAL 122
Query: 221 LAKNAILTAGFYQEKLQHE 239
L + FY+ +L +
Sbjct: 123 LGTRYTMEQDFYRGRLTEQ 141
>sp|Q3AFA8|MURI_CARHZ Glutamate racemase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=murI PE=3 SV=1
Length = 265
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 43/186 (23%)
Query: 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLR 217
R FL K G + +V C+ S ++P L V L E ++PL P +
Sbjct: 61 RFFL-KLGVKMVVFACNTSS--------AITLPILKERYPV---LMEGMLEPLRKNMPAK 108
Query: 218 --IGVLAKNAILTAGFYQEKLQ-----HEGFEVVLPDKATMEHTLIPALDA--LNRKDVE 268
+GVLA A + +G YQ+KL E + + P +P ++ ++ K+VE
Sbjct: 109 AKVGVLATEATVKSGLYQKKLMETNKFQEVYMIACPQ-------YVPLIEKGIVSGKEVE 161
Query: 269 GARNLLRIALQVLLVRAVNTVILA-------SDDMQDLLPPDDPLLKKCIDPMDALARST 321
A R + LL V V+L ++ +Q L P + IDP +AR
Sbjct: 162 EAT---REYFEPLLKEEVRDVVLGCTHYPFLTETIQKLYPKI-----QVIDPAAYVAREV 213
Query: 322 IKWVKS 327
+ +K
Sbjct: 214 YRKLKE 219
>sp|O66662|MURI_AQUAE Glutamate racemase OS=Aquifex aeolicus (strain VF5) GN=murI PE=3
SV=1
Length = 254
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 160 FLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKE-LKEANMKPLEAGSPLR 217
FL+ G +V+ C+ + + +E+ + P V E KE L+++ K R
Sbjct: 57 FLKDKGVDLLVVACNTASAYALEELKREFPFPVFGVIEPGVKEALRKSKTK--------R 108
Query: 218 IGVLAKNAILTAGFYQEKLQHEGFEV 243
IGV+ A + +G YQE L+ G EV
Sbjct: 109 IGVIGTQATIKSGAYQEALKRAGAEV 134
>sp|P56868|MURI_AQUPY Glutamate racemase OS=Aquifex pyrophilus GN=murI PE=1 SV=1
Length = 254
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAK 200
G++ D++I +L FL+ G IV+ C+ + + + + K +VP V E K
Sbjct: 40 GIRSKDTIIRYSLECAG-FLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVK 98
Query: 201 E-LKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEV 243
E LK++ K +IGV+ A + +G YQ KL+ G +V
Sbjct: 99 EALKKSRNK--------KIGVIGTPATVKSGAYQRKLEEGGADV 134
>sp|B1XPV8|MURI_SYNP2 Glutamate racemase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=murI PE=3 SV=1
Length = 279
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 24/180 (13%)
Query: 150 IVENLRRKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELKEANMK 208
+++ +R ++E G + +VM C+ S I D + P L + +
Sbjct: 53 LIQYVREILTWMEAQGVKMVVMACNTSSAIALDVIRSEFKTPVLGL-------ILPGARG 105
Query: 209 PLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVE 268
+ G RIGV+A A + +G Y+ + E + E +P ++A NR +
Sbjct: 106 AVSQGK--RIGVIATQATVNSGAYENAILEANPEAAVWQMPCPE--FVPLIEA-NRINDP 160
Query: 269 GARNLLRIALQVLLVRAVNTVILA-------SDDMQDLLPPDDPLLKKCIDPMDALARST 321
+ +++ LQ LL + ++T++ S +Q +LP C+DP + + +T
Sbjct: 161 HTKRIVQKRLQPLLEQGIDTLVYGCTHYRHLSGVIQSILPSH----VICVDPAEYVVSAT 216
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens
GN=SNAPC4 PE=1 SV=1
Length = 1469
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 245 LPDKATMEHTLIPALDALNRKDVEGARNLLRIALQ-VLLVRAVNTVILASDDMQDLLPPD 303
+P A H+ ++ +EG R LL + ++ VL V NT + + L P
Sbjct: 638 VPRSAQASHSADTRPAGAEKQALEGGRRLLTVPVETVLRVLRANTAARSCTQKEQLRQPP 697
Query: 304 DPLLKKCIDPMDALARSTIKWVK 326
P + D++ARS ++W++
Sbjct: 698 LPTSSPGVSSGDSVARSHVQWLR 720
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,718,809
Number of Sequences: 539616
Number of extensions: 4710946
Number of successful extensions: 11229
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 11222
Number of HSP's gapped (non-prelim): 17
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)