Query 020005
Match_columns 332
No_of_seqs 217 out of 1600
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1794 RacX Aspartate racemas 100.0 2.6E-57 5.6E-62 408.6 21.3 224 80-327 1-229 (230)
2 PRK10200 putative racemase; Pr 100.0 9.9E-54 2.2E-58 394.4 23.7 224 80-327 1-230 (230)
3 TIGR00035 asp_race aspartate r 100.0 4.1E-53 8.9E-58 389.6 24.2 224 80-327 1-228 (229)
4 TIGR00067 glut_race glutamate 100.0 4.5E-35 9.7E-40 273.5 19.8 208 83-326 1-216 (251)
5 PRK00865 glutamate racemase; P 100.0 1E-31 2.2E-36 252.2 21.0 207 80-326 5-221 (261)
6 COG0796 MurI Glutamate racemas 100.0 2.3E-28 4.9E-33 227.9 18.7 206 80-325 5-220 (269)
7 PF01177 Asp_Glu_race: Asp/Glu 99.9 5.6E-26 1.2E-30 205.3 13.0 205 86-322 1-216 (216)
8 PRK07475 hypothetical protein; 99.9 1.9E-23 4.1E-28 194.6 12.8 160 149-318 62-230 (245)
9 COG4126 Hydantoin racemase [Am 99.4 8.7E-12 1.9E-16 112.9 14.2 151 158-324 62-214 (230)
10 PRK10481 hypothetical protein; 98.9 8.2E-09 1.8E-13 95.0 11.3 150 146-323 71-222 (224)
11 TIGR02990 ectoine_eutA ectoine 98.5 7.2E-07 1.6E-11 83.1 9.6 159 150-326 55-225 (239)
12 COG3473 Maleate cis-trans isom 98.3 4.8E-06 1.1E-10 75.3 9.1 167 145-329 47-226 (238)
13 PF07302 AroM: AroM protein; 97.4 0.0056 1.2E-07 56.5 14.4 147 146-324 68-219 (221)
14 PF00532 Peripla_BP_1: Peripla 96.6 0.044 9.5E-07 51.8 13.5 203 81-327 2-257 (279)
15 PRK00865 glutamate racemase; P 95.9 0.083 1.8E-06 49.7 11.0 109 79-205 109-219 (261)
16 COG1609 PurR Transcriptional r 95.5 2.3 5E-05 41.3 19.7 209 79-330 57-308 (333)
17 PRK11303 DNA-binding transcrip 94.9 3.4 7.5E-05 38.9 19.1 160 157-328 109-307 (328)
18 TIGR00035 asp_race aspartate r 94.8 0.11 2.4E-06 47.8 7.6 100 217-321 3-112 (229)
19 PRK10727 DNA-binding transcrip 94.7 4.2 9.1E-05 38.8 18.8 160 158-330 108-308 (343)
20 PRK10014 DNA-binding transcrip 94.6 4.2 9E-05 38.6 19.4 159 158-328 113-321 (342)
21 PRK07475 hypothetical protein; 94.3 0.51 1.1E-05 44.1 10.8 54 146-199 175-230 (245)
22 PF01177 Asp_Glu_race: Asp/Glu 94.2 0.19 4.1E-06 45.0 7.6 53 150-202 159-215 (216)
23 PRK10481 hypothetical protein; 94.0 0.14 3.1E-06 47.4 6.4 51 154-204 171-222 (224)
24 TIGR00067 glut_race glutamate 93.9 0.73 1.6E-05 43.2 11.0 57 149-205 156-214 (251)
25 PRK10423 transcriptional repre 93.7 6.1 0.00013 37.1 18.5 159 158-327 105-303 (327)
26 COG1794 RacX Aspartate racemas 93.7 0.16 3.5E-06 46.9 6.0 64 260-323 50-114 (230)
27 cd06326 PBP1_STKc_like Type I 93.6 4.9 0.00011 37.9 16.5 79 157-244 59-168 (336)
28 TIGR03407 urea_ABC_UrtA urea A 93.6 3.9 8.5E-05 39.6 16.1 30 216-245 135-167 (359)
29 TIGR02417 fruct_sucro_rep D-fr 93.5 6.8 0.00015 36.9 18.6 159 158-328 109-306 (327)
30 COG4126 Hydantoin racemase [Am 93.4 0.28 6.1E-06 45.2 7.1 58 146-203 154-212 (230)
31 TIGR00222 panB 3-methyl-2-oxob 93.3 0.21 4.5E-06 47.4 6.4 43 152-195 160-202 (263)
32 TIGR03288 CoB_CoM_SS_B CoB--Co 93.2 1 2.3E-05 42.7 11.1 172 146-321 51-267 (290)
33 cd06346 PBP1_ABC_ligand_bindin 93.2 4.5 9.8E-05 38.1 15.4 80 158-245 59-170 (312)
34 cd06273 PBP1_GntR_like_1 This 93.1 6.5 0.00014 35.5 18.8 159 158-328 48-247 (268)
35 cd06345 PBP1_ABC_ligand_bindin 93.1 4 8.7E-05 38.9 15.1 85 158-245 59-177 (344)
36 cd06280 PBP1_LacI_like_4 Ligan 93.0 6.9 0.00015 35.4 16.9 157 158-328 48-241 (263)
37 cd06333 PBP1_ABC-type_HAAT_lik 92.9 5.3 0.00011 37.4 15.4 78 158-244 58-165 (312)
38 PLN02424 ketopantoate hydroxym 92.9 0.25 5.4E-06 48.2 6.3 45 150-195 180-224 (332)
39 COG0683 LivK ABC-type branched 92.9 5 0.00011 39.2 15.7 35 160-194 73-108 (366)
40 PRK09492 treR trehalose repres 92.8 8.5 0.00018 36.0 18.0 159 158-329 111-299 (315)
41 cd06557 KPHMT-like Ketopantoat 92.7 0.27 5.9E-06 46.4 6.2 44 151-195 157-200 (254)
42 PRK10200 putative racemase; Pr 92.7 0.5 1.1E-05 43.7 7.8 101 217-321 3-112 (230)
43 cd06320 PBP1_allose_binding Pe 92.5 6.9 0.00015 35.6 15.3 162 157-329 49-253 (275)
44 PRK06259 succinate dehydrogena 92.3 2.5 5.3E-05 43.3 13.1 169 144-320 309-485 (486)
45 PRK10703 DNA-binding transcrip 92.3 10 0.00023 35.9 21.7 160 158-328 108-308 (341)
46 PRK00311 panB 3-methyl-2-oxobu 92.1 0.34 7.3E-06 46.0 6.1 44 151-195 160-203 (264)
47 cd06337 PBP1_ABC_ligand_bindin 92.1 2.9 6.3E-05 40.4 12.9 38 157-194 60-99 (357)
48 cd06277 PBP1_LacI_like_1 Ligan 92.1 6.8 0.00015 35.5 14.7 76 158-242 51-150 (268)
49 TIGR02317 prpB methylisocitrat 92.1 0.87 1.9E-05 43.7 8.9 105 80-208 113-224 (285)
50 cd06356 PBP1_Amide_Urea_BP_lik 91.9 12 0.00025 35.8 16.7 80 158-245 59-165 (334)
51 PRK09526 lacI lac repressor; R 91.9 12 0.00025 35.5 17.4 159 157-328 112-309 (342)
52 TIGR03669 urea_ABC_arch urea A 91.7 13 0.00029 36.5 17.1 79 158-244 60-165 (374)
53 cd06288 PBP1_sucrose_transcrip 91.2 11 0.00024 34.0 18.1 163 157-330 48-249 (269)
54 cd06298 PBP1_CcpA_like Ligand- 91.2 11 0.00024 33.9 18.8 158 158-328 48-246 (268)
55 PRK15404 leucine ABC transport 90.9 14 0.00031 36.0 16.4 76 216-294 162-249 (369)
56 PRK14987 gluconate operon tran 90.6 15 0.00033 34.6 20.1 160 158-329 112-309 (331)
57 cd06286 PBP1_CcpB_like Ligand- 90.6 12 0.00027 33.5 18.5 157 157-328 47-242 (260)
58 TIGR02319 CPEP_Pphonmut carbox 90.6 1.4 3E-05 42.5 8.6 104 80-207 117-227 (294)
59 cd06331 PBP1_AmiC_like Type I 90.4 4 8.7E-05 38.7 11.7 81 157-245 58-165 (333)
60 cd04509 PBP1_ABC_transporter_G 90.3 7 0.00015 35.2 12.8 131 158-296 59-228 (299)
61 cd06289 PBP1_MalI_like Ligand- 90.3 13 0.00029 33.3 16.8 160 157-328 47-247 (268)
62 PF06506 PrpR_N: Propionate ca 89.6 3.9 8.5E-05 35.9 10.2 139 155-328 23-166 (176)
63 cd06268 PBP1_ABC_transporter_L 89.6 9.2 0.0002 34.4 13.0 134 157-297 58-226 (298)
64 cd06322 PBP1_ABC_sugar_binding 89.5 16 0.00034 33.0 14.7 162 157-328 47-249 (267)
65 cd06336 PBP1_ABC_ligand_bindin 89.4 6.1 0.00013 37.9 12.2 30 216-245 139-171 (347)
66 cd06366 PBP1_GABAb_receptor Li 89.3 5.2 0.00011 38.2 11.6 77 161-245 62-168 (350)
67 TIGR01481 ccpA catabolite cont 89.3 19 0.00042 33.8 20.0 205 80-328 59-305 (329)
68 cd06341 PBP1_ABC_ligand_bindin 89.3 5.6 0.00012 37.8 11.7 79 158-244 59-165 (341)
69 TIGR02990 ectoine_eutA ectoine 89.2 0.97 2.1E-05 42.2 6.2 56 146-205 166-223 (239)
70 cd06360 PBP1_alkylbenzenes_lik 89.1 6.9 0.00015 36.8 12.2 81 157-245 56-167 (336)
71 cd06300 PBP1_ABC_sugar_binding 89.0 17 0.00038 32.9 16.5 79 157-244 52-160 (272)
72 PF07302 AroM: AroM protein; 88.6 1.6 3.5E-05 40.4 7.0 51 154-204 167-218 (221)
73 cd06339 PBP1_YraM_LppC_lipopro 88.5 18 0.00038 34.7 14.7 80 158-245 52-157 (336)
74 cd06271 PBP1_AglR_RafR_like Li 88.4 18 0.0004 32.4 16.4 156 161-328 55-250 (268)
75 cd06329 PBP1_SBP_like_3 Peripl 88.4 13 0.00028 35.5 13.6 77 216-294 144-234 (342)
76 TIGR02405 trehalos_R_Ecol treh 88.3 22 0.00048 33.3 19.4 123 195-328 160-295 (311)
77 cd06295 PBP1_CelR Ligand bindi 88.2 20 0.00043 32.5 16.1 158 159-328 58-255 (275)
78 PRK11320 prpB 2-methylisocitra 87.6 3.5 7.6E-05 39.7 9.0 105 80-208 118-229 (292)
79 cd06357 PBP1_AmiC Periplasmic 87.6 28 0.00061 33.6 16.9 76 162-245 64-165 (360)
80 cd06305 PBP1_methylthioribose_ 87.4 22 0.00047 32.1 18.6 160 159-329 49-256 (273)
81 cd06343 PBP1_ABC_ligand_bindin 87.3 28 0.0006 33.3 15.3 30 216-245 145-177 (362)
82 cd06275 PBP1_PurR Ligand-bindi 87.2 22 0.00048 32.0 16.8 160 157-327 47-246 (269)
83 cd06285 PBP1_LacI_like_7 Ligan 87.1 23 0.00049 32.0 17.0 160 157-328 47-244 (265)
84 cd01536 PBP1_ABC_sugar_binding 86.7 22 0.00048 31.6 16.7 160 158-328 48-251 (267)
85 KOG2949 Ketopantoate hydroxyme 86.4 3.5 7.5E-05 38.5 7.8 138 28-195 86-227 (306)
86 cd06338 PBP1_ABC_ligand_bindin 86.3 14 0.0003 35.0 12.5 36 159-194 64-101 (345)
87 cd06355 PBP1_FmdD_like Peripla 86.2 15 0.00033 35.3 12.7 81 158-245 59-166 (348)
88 cd06323 PBP1_ribose_binding Pe 86.0 25 0.00054 31.5 16.9 161 158-328 48-250 (268)
89 cd06342 PBP1_ABC_LIVBP_like Ty 85.9 16 0.00034 34.3 12.5 81 158-245 59-168 (334)
90 PRK10339 DNA-binding transcrip 85.8 31 0.00068 32.5 14.6 122 196-328 163-303 (327)
91 TIGR00007 phosphoribosylformim 85.6 8 0.00017 35.1 10.0 122 156-292 32-165 (230)
92 COG2048 HdrB Heterodisulfide r 85.6 1.5 3.3E-05 42.2 5.3 57 143-199 200-264 (293)
93 cd01545 PBP1_SalR Ligand-bindi 85.4 27 0.00059 31.3 16.8 159 158-328 49-248 (270)
94 PF13458 Peripla_BP_6: Peripla 85.4 12 0.00027 35.1 11.6 80 157-244 60-167 (343)
95 cd06348 PBP1_ABC_ligand_bindin 85.2 12 0.00025 35.7 11.4 78 216-294 137-225 (344)
96 cd06279 PBP1_LacI_like_3 Ligan 85.0 31 0.00068 31.6 16.7 57 159-224 50-125 (283)
97 COG0796 MurI Glutamate racemas 84.8 7.2 0.00016 37.2 9.4 112 74-205 104-219 (269)
98 PRK11274 glcF glycolate oxidas 84.2 38 0.00083 33.6 14.9 172 145-321 216-405 (407)
99 PRK01710 murD UDP-N-acetylmura 84.0 10 0.00022 38.4 10.9 69 164-244 76-147 (458)
100 cd06299 PBP1_LacI_like_13 Liga 84.0 31 0.00068 30.9 17.7 159 157-328 47-244 (265)
101 cd06327 PBP1_SBP_like_1 Peripl 83.6 16 0.00035 34.6 11.5 36 159-194 59-96 (334)
102 PF13344 Hydrolase_6: Haloacid 83.5 13 0.00029 29.6 9.3 74 155-242 20-101 (101)
103 cd06296 PBP1_CatR_like Ligand- 83.3 34 0.00073 30.8 16.9 160 157-328 47-247 (270)
104 PRK10653 D-ribose transporter 83.3 38 0.00083 31.4 18.2 114 217-331 150-279 (295)
105 cd06325 PBP1_ABC_uncharacteriz 82.9 27 0.00058 31.7 12.3 79 157-245 52-165 (281)
106 cd06556 ICL_KPHMT Members of t 82.6 2.9 6.3E-05 39.1 5.7 41 154-195 158-198 (240)
107 COG0041 PurE Phosphoribosylcar 82.6 8.1 0.00018 33.8 8.0 83 81-195 3-87 (162)
108 cd06335 PBP1_ABC_ligand_bindin 82.6 13 0.00028 35.6 10.6 127 157-292 58-224 (347)
109 TIGR03151 enACPred_II putative 82.6 17 0.00037 35.1 11.3 74 157-239 121-212 (307)
110 cd06379 PBP1_iGluR_NMDA_NR1 N- 82.3 18 0.00038 35.2 11.5 26 216-241 155-183 (377)
111 cd01543 PBP1_XylR Ligand-bindi 82.2 38 0.00083 30.6 15.3 157 159-327 44-240 (265)
112 PRK00421 murC UDP-N-acetylmura 82.2 15 0.00032 37.2 11.2 66 165-241 66-134 (461)
113 cd06297 PBP1_LacI_like_12 Liga 82.1 40 0.00086 30.7 19.1 153 160-328 50-247 (269)
114 PRK15424 propionate catabolism 82.0 20 0.00043 37.6 12.1 101 159-292 58-162 (538)
115 cd06368 PBP1_iGluR_non_NMDA_li 81.5 16 0.00034 34.3 10.6 36 159-194 56-92 (324)
116 PF02548 Pantoate_transf: Keto 81.2 3.9 8.4E-05 38.8 6.1 43 152-195 162-204 (261)
117 PRK03369 murD UDP-N-acetylmura 81.1 16 0.00035 37.4 11.1 74 165-243 70-146 (488)
118 cd06347 PBP1_ABC_ligand_bindin 80.9 18 0.0004 33.8 10.7 30 216-245 136-169 (334)
119 cd06380 PBP1_iGluR_AMPA N-term 80.9 22 0.00047 34.5 11.5 38 156-194 54-92 (382)
120 TIGR03288 CoB_CoM_SS_B CoB--Co 80.7 5.3 0.00012 37.9 7.0 58 145-202 202-267 (290)
121 PRK10936 TMAO reductase system 80.6 41 0.0009 32.3 13.3 132 80-244 46-206 (343)
122 PRK02006 murD UDP-N-acetylmura 80.5 30 0.00066 35.3 12.9 76 165-244 69-151 (498)
123 cd06267 PBP1_LacI_sugar_bindin 80.2 41 0.00089 29.6 17.4 76 157-241 47-147 (264)
124 PRK10355 xylF D-xylose transpo 80.2 38 0.00082 32.5 12.8 209 79-330 24-283 (330)
125 COG0413 PanB Ketopantoate hydr 80.1 9.5 0.00021 36.1 8.1 46 149-195 158-203 (268)
126 cd06312 PBP1_ABC_sugar_binding 79.7 47 0.001 30.1 16.0 78 157-243 49-158 (271)
127 cd06302 PBP1_LsrB_Quorum_Sensi 79.5 53 0.0012 30.5 16.8 56 276-331 199-258 (298)
128 cd06350 PBP1_GPCR_family_C_lik 79.4 24 0.00051 33.4 11.0 28 217-244 162-192 (348)
129 cd06334 PBP1_ABC_ligand_bindin 79.4 27 0.00059 33.8 11.6 78 216-293 141-227 (351)
130 cd06292 PBP1_LacI_like_10 Liga 79.3 48 0.001 29.9 16.2 159 157-328 47-250 (273)
131 cd06287 PBP1_LacI_like_8 Ligan 79.2 52 0.0011 30.2 15.7 122 196-328 107-247 (269)
132 TIGR02329 propionate_PrpR prop 79.1 28 0.0006 36.3 12.1 68 159-236 48-119 (526)
133 cd06281 PBP1_LacI_like_5 Ligan 78.9 50 0.0011 29.8 19.3 158 157-327 47-244 (269)
134 cd01575 PBP1_GntR Ligand-bindi 78.4 49 0.0011 29.5 22.1 160 157-328 47-246 (268)
135 cd06321 PBP1_ABC_sugar_binding 78.2 52 0.0011 29.7 15.7 77 158-243 50-154 (271)
136 cd06344 PBP1_ABC_ligand_bindin 77.8 64 0.0014 30.5 16.0 37 158-194 58-96 (332)
137 cd06270 PBP1_GalS_like Ligand 77.7 53 0.0012 29.5 16.8 160 157-328 47-246 (268)
138 cd06290 PBP1_LacI_like_9 Ligan 77.4 54 0.0012 29.4 16.9 160 156-328 46-245 (265)
139 cd06382 PBP1_iGluR_Kainate N-t 77.4 30 0.00065 32.6 11.1 34 161-194 59-93 (327)
140 COG0462 PrsA Phosphoribosylpyr 77.3 7.6 0.00017 37.8 6.8 162 148-325 106-304 (314)
141 COG1587 HemD Uroporphyrinogen- 76.0 24 0.00052 32.6 9.7 83 159-245 46-151 (248)
142 cd06278 PBP1_LacI_like_2 Ligan 75.6 59 0.0013 29.0 17.9 158 158-328 47-244 (266)
143 PRK04690 murD UDP-N-acetylmura 75.6 58 0.0012 33.2 13.1 75 165-245 69-146 (468)
144 COG0821 gcpE 1-hydroxy-2-methy 75.5 6 0.00013 38.8 5.6 37 157-193 41-79 (361)
145 PRK01259 ribose-phosphate pyro 75.4 14 0.00031 35.7 8.3 152 157-323 109-297 (309)
146 cd00377 ICL_PEPM Members of th 75.4 13 0.00028 34.7 7.7 91 80-192 109-200 (243)
147 PRK14573 bifunctional D-alanyl 75.0 24 0.00051 38.6 10.8 67 165-242 63-132 (809)
148 cd06353 PBP1_BmpA_Med_like Per 74.7 23 0.00049 33.0 9.3 31 76-106 116-146 (258)
149 PRK01368 murD UDP-N-acetylmura 74.7 30 0.00064 35.2 10.8 70 165-245 63-135 (454)
150 cd06358 PBP1_NHase Type I peri 74.5 78 0.0017 29.9 16.4 30 216-245 133-165 (333)
151 PRK02269 ribose-phosphate pyro 74.3 15 0.00032 35.8 8.1 155 157-324 114-306 (320)
152 PTZ00145 phosphoribosylpyropho 74.3 15 0.00033 37.4 8.4 155 157-324 228-425 (439)
153 cd01391 Periplasmic_Binding_Pr 74.2 57 0.0012 28.2 18.8 79 158-244 51-157 (269)
154 cd04732 HisA HisA. Phosphorib 74.1 29 0.00062 31.4 9.6 122 156-292 33-166 (234)
155 TIGR01037 pyrD_sub1_fam dihydr 73.7 29 0.00063 32.9 9.9 22 155-177 172-193 (300)
156 cd06303 PBP1_LuxPQ_Quorum_Sens 73.1 76 0.0016 29.0 14.3 114 216-330 132-262 (280)
157 PRK01438 murD UDP-N-acetylmura 72.9 45 0.00098 33.7 11.6 74 164-245 77-153 (480)
158 PRK03092 ribose-phosphate pyro 72.8 17 0.00038 35.0 8.1 158 156-324 97-290 (304)
159 cd06314 PBP1_tmGBP Periplasmic 72.4 75 0.0016 28.7 15.9 52 277-328 194-249 (271)
160 cd06389 PBP1_iGluR_AMPA_GluR2 72.3 27 0.00058 34.2 9.5 79 156-244 49-149 (370)
161 PF13377 Peripla_BP_3: Peripla 72.2 28 0.0006 28.8 8.4 120 199-330 1-139 (160)
162 cd01542 PBP1_TreR_like Ligand- 72.1 72 0.0016 28.4 17.6 160 157-328 47-242 (259)
163 TIGR01162 purE phosphoribosyla 71.8 31 0.00067 30.3 8.7 83 83-196 1-84 (156)
164 cd01537 PBP1_Repressors_Sugar_ 71.7 70 0.0015 28.0 20.6 159 157-328 47-247 (264)
165 PRK02458 ribose-phosphate pyro 71.6 28 0.00061 33.9 9.3 156 156-324 117-306 (323)
166 PRK10401 DNA-binding transcrip 71.2 95 0.0021 29.4 21.8 158 158-328 108-306 (346)
167 cd06317 PBP1_ABC_sugar_binding 70.4 81 0.0018 28.3 17.7 164 158-330 49-259 (275)
168 cd06349 PBP1_ABC_ligand_bindin 70.4 64 0.0014 30.5 11.5 29 217-245 137-168 (340)
169 cd06269 PBP1_glutamate_recepto 70.0 54 0.0012 29.4 10.4 32 164-195 70-102 (298)
170 PRK01390 murD UDP-N-acetylmura 69.7 56 0.0012 32.9 11.4 74 164-244 64-144 (460)
171 cd06310 PBP1_ABC_sugar_binding 69.6 85 0.0018 28.2 17.6 161 158-328 50-253 (273)
172 PRK00553 ribose-phosphate pyro 69.6 24 0.00051 34.6 8.3 152 157-324 118-311 (332)
173 cd06283 PBP1_RegR_EndR_KdgR_li 69.5 82 0.0018 28.0 18.5 75 158-241 48-148 (267)
174 PRK03803 murD UDP-N-acetylmura 68.8 68 0.0015 32.2 11.8 69 165-245 68-139 (448)
175 cd06282 PBP1_GntR_like_2 Ligan 68.8 85 0.0019 27.9 17.8 160 157-328 47-245 (266)
176 TIGR03863 PQQ_ABC_bind ABC tra 68.7 44 0.00096 32.6 10.1 81 157-245 51-161 (347)
177 PRK07259 dihydroorotate dehydr 68.7 46 0.001 31.6 10.0 24 154-178 171-194 (301)
178 cd06363 PBP1_Taste_receptor Li 68.5 40 0.00087 33.2 9.9 80 216-295 177-269 (410)
179 PF09587 PGA_cap: Bacterial ca 68.1 18 0.00039 33.5 6.9 134 157-297 67-228 (250)
180 cd06367 PBP1_iGluR_NMDA N-term 68.0 20 0.00044 34.4 7.6 39 156-194 54-96 (362)
181 COG1703 ArgK Putative periplas 67.7 23 0.00051 34.4 7.6 120 79-203 50-181 (323)
182 PRK00115 hemE uroporphyrinogen 66.9 74 0.0016 30.9 11.3 27 150-176 184-210 (346)
183 TIGR00735 hisF imidazoleglycer 66.9 56 0.0012 30.3 10.0 126 156-291 34-174 (254)
184 PRK00366 ispG 4-hydroxy-3-meth 66.6 12 0.00026 37.0 5.5 35 158-192 48-84 (360)
185 PRK00278 trpC indole-3-glycero 66.5 59 0.0013 30.6 10.1 81 155-245 73-165 (260)
186 TIGR00612 ispG_gcpE 1-hydroxy- 66.1 13 0.00027 36.6 5.5 35 158-192 40-76 (346)
187 PRK14804 ornithine carbamoyltr 65.9 68 0.0015 31.1 10.6 87 155-247 88-184 (311)
188 PRK06259 succinate dehydrogena 65.8 16 0.00034 37.3 6.6 82 233-319 283-365 (486)
189 PRK04923 ribose-phosphate pyro 65.8 30 0.00065 33.7 8.1 154 157-324 116-307 (319)
190 cd06393 PBP1_iGluR_Kainate_Glu 65.6 44 0.00095 32.6 9.4 38 156-194 64-102 (384)
191 cd06272 PBP1_hexuronate_repres 65.4 1E+02 0.0022 27.6 15.8 158 159-328 45-241 (261)
192 PRK14106 murD UDP-N-acetylmura 65.4 1.3E+02 0.0028 30.1 12.9 68 164-243 67-137 (450)
193 PLN02369 ribose-phosphate pyro 65.1 30 0.00066 33.4 8.0 157 157-324 100-291 (302)
194 PRK00779 ornithine carbamoyltr 64.9 67 0.0015 31.0 10.3 86 154-248 88-184 (304)
195 cd06301 PBP1_rhizopine_binding 64.4 1.1E+02 0.0024 27.5 15.2 80 158-244 49-158 (272)
196 PF13714 PEP_mutase: Phosphoen 64.1 20 0.00043 33.5 6.3 33 158-190 161-193 (238)
197 PRK02812 ribose-phosphate pyro 64.1 34 0.00073 33.5 8.2 127 157-295 130-267 (330)
198 PF02574 S-methyl_trans: Homoc 64.0 20 0.00043 34.3 6.5 141 144-296 127-291 (305)
199 PLN02591 tryptophan synthase 63.7 1.3E+02 0.0028 28.2 14.2 55 86-172 58-113 (250)
200 cd04740 DHOD_1B_like Dihydroor 63.7 65 0.0014 30.4 10.0 23 154-177 168-190 (296)
201 PRK12738 kbaY tagatose-bisphos 63.3 20 0.00044 34.4 6.4 70 156-244 159-229 (286)
202 TIGR02320 PEP_mutase phosphoen 63.0 48 0.001 31.8 8.9 71 80-173 117-190 (285)
203 PRK07709 fructose-bisphosphate 63.0 19 0.00042 34.5 6.2 26 156-181 160-185 (285)
204 TIGR01918 various_sel_PB selen 62.9 18 0.00038 36.7 6.0 46 150-196 321-372 (431)
205 COG3142 CutC Uncharacterized p 62.2 1.3E+02 0.0028 28.2 11.1 80 159-244 15-119 (241)
206 cd06311 PBP1_ABC_sugar_binding 62.1 1.1E+02 0.0024 27.6 11.0 81 157-244 52-160 (274)
207 cd06306 PBP1_TorT-like TorT-li 62.0 98 0.0021 28.1 10.6 84 157-244 49-159 (268)
208 PRK02261 methylaspartate mutas 61.9 88 0.0019 26.5 9.4 72 159-249 48-121 (137)
209 PRK08610 fructose-bisphosphate 61.8 18 0.00039 34.8 5.7 26 156-181 160-185 (286)
210 cd06351 PBP1_iGluR_N_LIVBP_lik 61.7 85 0.0019 29.0 10.3 39 157-195 55-94 (328)
211 PRK08444 hypothetical protein; 61.2 13 0.00029 36.7 4.8 136 80-247 97-243 (353)
212 TIGR01858 tag_bisphos_ald clas 60.9 21 0.00045 34.2 6.0 26 156-181 157-182 (282)
213 PF01380 SIS: SIS domain SIS d 60.4 81 0.0018 25.1 8.8 26 154-179 69-94 (131)
214 TIGR01917 gly_red_sel_B glycin 60.1 18 0.0004 36.6 5.6 46 150-196 321-372 (431)
215 PRK12857 fructose-1,6-bisphosp 59.9 14 0.0003 35.5 4.6 27 155-181 158-184 (284)
216 PRK11041 DNA-binding transcrip 59.9 1.4E+02 0.0031 27.4 16.2 122 196-328 141-282 (309)
217 PF00731 AIRC: AIR carboxylase 59.8 19 0.00042 31.3 5.0 81 82-194 2-84 (150)
218 PRK12737 gatY tagatose-bisphos 59.8 24 0.00052 33.8 6.2 26 156-181 159-184 (284)
219 PF02142 MGS: MGS-like domain 59.7 24 0.00051 27.7 5.2 31 197-244 4-34 (95)
220 cd06294 PBP1_ycjW_transcriptio 59.6 1.3E+02 0.0028 26.8 17.6 157 160-328 55-252 (270)
221 PTZ00314 inosine-5'-monophosph 59.6 86 0.0019 32.5 10.6 109 155-292 243-373 (495)
222 COG0771 MurD UDP-N-acetylmuram 59.4 1.2E+02 0.0025 31.2 11.3 71 164-245 68-141 (448)
223 PRK09701 D-allose transporter 59.3 1.6E+02 0.0034 27.7 15.5 208 81-326 25-284 (311)
224 PF03446 NAD_binding_2: NAD bi 59.3 1.1E+02 0.0025 26.1 10.0 29 217-245 88-117 (163)
225 TIGR01769 GGGP geranylgeranylg 59.2 17 0.00038 33.1 4.9 41 152-192 11-57 (205)
226 PF08901 DUF1847: Protein of u 59.2 17 0.00038 31.8 4.6 45 193-245 41-86 (157)
227 PRK09860 putative alcohol dehy 58.3 49 0.0011 32.8 8.4 44 194-245 18-64 (383)
228 PRK04452 acetyl-CoA decarbonyl 58.2 1.9E+02 0.0041 28.3 12.8 33 162-194 86-131 (319)
229 PF02729 OTCace_N: Aspartate/o 58.1 19 0.0004 30.9 4.6 41 154-196 84-124 (142)
230 TIGR01859 fruc_bis_ald_ fructo 58.0 37 0.00079 32.5 7.1 23 158-180 159-181 (282)
231 PRK09195 gatY tagatose-bisphos 57.9 15 0.00033 35.2 4.5 70 156-244 159-229 (284)
232 PRK07360 FO synthase subunit 2 57.8 53 0.0011 32.5 8.5 103 80-208 108-216 (371)
233 PF13911 AhpC-TSA_2: AhpC/TSA 57.8 17 0.00037 29.2 4.2 36 156-192 4-41 (115)
234 cd06362 PBP1_mGluR Ligand bind 57.7 1.4E+02 0.0031 29.6 11.7 79 217-296 174-267 (452)
235 TIGR03379 glycerol3P_GlpC glyc 57.6 26 0.00055 34.7 6.2 54 146-202 343-396 (397)
236 PRK02842 light-independent pro 57.5 64 0.0014 32.5 9.1 77 214-292 289-367 (427)
237 PRK01713 ornithine carbamoyltr 57.5 70 0.0015 31.4 9.1 85 154-246 91-187 (334)
238 cd06340 PBP1_ABC_ligand_bindin 57.3 86 0.0019 29.9 9.7 33 162-194 67-100 (347)
239 cd06330 PBP1_Arsenic_SBP_like 57.0 46 0.00099 31.5 7.7 38 157-194 58-97 (346)
240 cd06319 PBP1_ABC_sugar_binding 56.4 1.5E+02 0.0033 26.6 12.7 111 216-328 126-255 (277)
241 cd02809 alpha_hydroxyacid_oxid 56.1 53 0.0012 31.3 7.9 53 156-208 133-195 (299)
242 cd06308 PBP1_sensor_kinase_lik 55.9 1.5E+02 0.0034 26.6 10.8 160 159-328 50-253 (270)
243 COG2179 Predicted hydrolase of 55.7 66 0.0014 28.7 7.7 78 155-245 52-136 (175)
244 PRK13585 1-(5-phosphoribosyl)- 55.7 1.1E+02 0.0024 27.7 9.8 122 156-292 36-169 (241)
245 PRK02102 ornithine carbamoyltr 55.4 1.2E+02 0.0027 29.7 10.4 84 154-246 91-186 (331)
246 cd06373 PBP1_NPR_like Ligand b 55.4 98 0.0021 30.1 9.9 35 159-193 67-102 (396)
247 cd06304 PBP1_BmpA_like Peripla 55.4 1.6E+02 0.0035 26.6 13.6 50 276-329 193-243 (260)
248 cd08182 HEPD Hydroxyethylphosp 55.4 62 0.0014 31.7 8.5 43 195-245 11-53 (367)
249 cd06313 PBP1_ABC_sugar_binding 55.3 1.6E+02 0.0036 26.7 17.3 162 158-327 48-251 (272)
250 TIGR02638 lactal_redase lactal 55.1 53 0.0011 32.5 8.0 44 194-245 16-62 (379)
251 PRK10550 tRNA-dihydrouridine s 55.0 28 0.0006 33.7 5.8 43 155-197 151-203 (312)
252 cd05017 SIS_PGI_PMI_1 The memb 55.0 1.1E+02 0.0023 24.7 8.6 38 155-195 60-97 (119)
253 cd04731 HisF The cyclase subun 54.7 1.4E+02 0.0031 27.2 10.3 78 155-241 30-119 (243)
254 CHL00200 trpA tryptophan synth 54.2 2E+02 0.0043 27.2 14.6 157 85-299 70-238 (263)
255 COG0196 RibF FAD synthase [Coe 53.5 63 0.0014 31.4 7.9 151 82-274 20-182 (304)
256 cd01538 PBP1_ABC_xylose_bindin 53.3 1.8E+02 0.004 26.6 12.9 36 158-194 48-86 (288)
257 TIGR00658 orni_carb_tr ornithi 53.2 1.3E+02 0.0029 28.9 10.2 85 154-247 84-179 (304)
258 TIGR01457 HAD-SF-IIA-hyp2 HAD- 53.2 1.2E+02 0.0025 28.0 9.5 76 155-243 23-105 (249)
259 PRK07998 gatY putative fructos 53.1 27 0.00059 33.5 5.3 26 156-181 157-182 (283)
260 COG1911 RPL30 Ribosomal protei 53.1 36 0.00079 27.5 5.1 62 155-223 25-89 (100)
261 PRK04308 murD UDP-N-acetylmura 53.0 51 0.0011 33.1 7.6 72 164-244 66-140 (445)
262 cd06315 PBP1_ABC_sugar_binding 52.9 1.8E+02 0.004 26.5 14.5 78 157-243 48-160 (280)
263 cd06307 PBP1_uncharacterized_s 52.8 1.8E+02 0.0038 26.3 13.7 53 276-328 199-255 (275)
264 PRK07084 fructose-bisphosphate 52.7 33 0.00071 33.6 5.9 26 156-181 168-193 (321)
265 PF00218 IGPS: Indole-3-glycer 52.3 1.5E+02 0.0032 28.0 10.0 82 156-245 72-163 (254)
266 PF07476 MAAL_C: Methylasparta 52.2 24 0.00051 33.0 4.5 106 73-204 70-184 (248)
267 cd07372 2A5CPDO_B The beta sub 52.1 72 0.0016 30.7 8.1 107 158-277 105-242 (294)
268 cd00951 KDGDH 5-dehydro-4-deox 52.0 61 0.0013 30.8 7.6 49 156-204 85-148 (289)
269 PRK02083 imidazole glycerol ph 52.0 70 0.0015 29.6 7.8 76 156-240 34-121 (253)
270 PRK00856 pyrB aspartate carbam 52.0 20 0.00043 34.7 4.3 85 154-246 90-188 (305)
271 cd00717 URO-D Uroporphyrinogen 51.9 2.3E+02 0.0049 27.3 13.2 25 150-174 175-199 (335)
272 cd06352 PBP1_NPR_GC_like Ligan 51.4 2.3E+02 0.005 27.2 12.3 78 159-244 62-170 (389)
273 cd01541 PBP1_AraR Ligand-bindi 51.4 1.8E+02 0.004 26.1 18.4 160 157-328 47-252 (273)
274 KOG3923 D-aspartate oxidase [A 51.3 57 0.0012 31.9 7.1 159 79-245 2-170 (342)
275 PRK00748 1-(5-phosphoribosyl)- 51.2 1.3E+02 0.0029 27.1 9.4 116 154-291 32-165 (233)
276 PRK06806 fructose-bisphosphate 50.9 61 0.0013 31.0 7.3 23 158-180 159-181 (281)
277 smart00854 PGA_cap Bacterial c 50.8 49 0.0011 30.3 6.6 133 157-297 65-217 (239)
278 PRK10624 L-1,2-propanediol oxi 50.8 71 0.0015 31.6 8.1 43 195-245 18-63 (382)
279 PRK03515 ornithine carbamoyltr 50.7 1.8E+02 0.0039 28.6 10.7 85 154-245 90-186 (336)
280 PF04551 GcpE: GcpE protein; 50.2 28 0.00061 34.5 5.0 45 144-192 27-78 (359)
281 cd06353 PBP1_BmpA_Med_like Per 50.2 52 0.0011 30.5 6.7 38 156-193 48-86 (258)
282 PRK12562 ornithine carbamoyltr 50.1 2E+02 0.0043 28.3 10.9 85 154-245 90-186 (334)
283 COG2185 Sbm Methylmalonyl-CoA 49.8 51 0.0011 28.5 6.0 70 226-298 26-105 (143)
284 cd06318 PBP1_ABC_sugar_binding 49.7 2E+02 0.0043 25.9 17.0 54 275-328 203-260 (282)
285 COG3473 Maleate cis-trans isom 49.7 33 0.00072 31.7 5.0 52 156-207 170-224 (238)
286 TIGR01251 ribP_PPkin ribose-ph 49.5 88 0.0019 30.1 8.3 154 156-324 109-297 (308)
287 PF08821 CGGC: CGGC domain; I 49.5 40 0.00088 27.5 5.1 23 154-176 54-76 (107)
288 TIGR00262 trpA tryptophan synt 49.2 1.3E+02 0.0029 28.2 9.2 17 278-294 213-229 (256)
289 PRK09234 fbiC FO synthase; Rev 48.8 87 0.0019 34.7 9.0 103 81-208 575-681 (843)
290 TIGR00167 cbbA ketose-bisphosp 48.7 37 0.0008 32.6 5.5 70 156-244 162-233 (288)
291 PLN02489 homocysteine S-methyl 48.6 2.7E+02 0.0059 27.2 12.4 136 145-296 160-319 (335)
292 COG0552 FtsY Signal recognitio 48.2 66 0.0014 31.7 7.1 68 154-230 156-236 (340)
293 cd06309 PBP1_YtfQ_like Peripla 47.8 2.1E+02 0.0045 25.7 18.3 167 157-331 47-259 (273)
294 PRK08811 uroporphyrinogen-III 47.8 1.2E+02 0.0026 28.5 8.8 92 152-245 28-166 (266)
295 PRK13523 NADPH dehydrogenase N 47.7 1.7E+02 0.0036 28.6 10.0 21 155-175 230-250 (337)
296 TIGR00322 diphth2_R diphthamid 47.3 1.5E+02 0.0033 29.0 9.6 30 216-245 118-148 (332)
297 TIGR03586 PseI pseudaminic aci 47.2 2.9E+02 0.0062 27.1 11.9 72 218-297 91-174 (327)
298 PF02754 CCG: Cysteine-rich do 47.1 1E+02 0.0022 22.3 6.8 60 230-294 19-78 (85)
299 cd06386 PBP1_NPR_C_like Ligand 46.9 2.8E+02 0.006 27.1 11.6 37 158-194 60-97 (387)
300 PRK08674 bifunctional phosphog 46.9 1.2E+02 0.0027 29.3 9.0 37 155-194 95-131 (337)
301 cd08189 Fe-ADH5 Iron-containin 46.7 92 0.002 30.7 8.1 45 193-245 12-59 (374)
302 COG3367 Uncharacterized conser 46.7 22 0.00047 34.9 3.5 38 165-202 287-331 (339)
303 TIGR03700 mena_SCO4494 putativ 46.4 1.4E+02 0.003 29.2 9.3 104 80-208 96-203 (351)
304 PRK05835 fructose-bisphosphate 46.4 26 0.00056 34.1 4.1 26 156-181 159-184 (307)
305 TIGR00735 hisF imidazoleglycer 46.4 1.3E+02 0.0027 28.0 8.6 40 155-194 158-205 (254)
306 PRK11168 glpC sn-glycerol-3-ph 46.2 54 0.0012 32.2 6.5 45 155-202 350-394 (396)
307 cd00947 TBP_aldolase_IIB Tagat 46.2 46 0.00099 31.8 5.7 71 156-244 152-223 (276)
308 PRK05926 hypothetical protein; 46.2 1.1E+02 0.0023 30.5 8.5 136 80-246 115-260 (370)
309 PF03932 CutC: CutC family; I 46.0 1.6E+02 0.0035 26.8 9.0 82 158-245 13-119 (201)
310 cd01574 PBP1_LacI Ligand-bindi 46.0 2.2E+02 0.0047 25.3 17.7 158 158-327 49-242 (264)
311 cd06274 PBP1_FruR Ligand bindi 46.0 2.2E+02 0.0047 25.4 16.7 159 157-327 47-246 (264)
312 cd06332 PBP1_aromatic_compound 45.9 2.5E+02 0.0054 26.0 12.5 37 157-194 56-95 (333)
313 TIGR02351 thiH thiazole biosyn 45.9 76 0.0016 31.3 7.4 109 80-228 120-231 (366)
314 cd08190 HOT Hydroxyacid-oxoaci 45.7 96 0.0021 31.1 8.2 43 195-245 11-56 (414)
315 PF00490 ALAD: Delta-aminolevu 45.6 1.4E+02 0.0031 29.2 8.9 110 145-291 140-249 (324)
316 PRK08185 hypothetical protein; 45.6 58 0.0013 31.2 6.3 72 157-245 154-226 (283)
317 PRK11274 glcF glycolate oxidas 45.5 57 0.0012 32.3 6.5 45 155-202 361-405 (407)
318 COG1454 EutG Alcohol dehydroge 45.2 1E+02 0.0023 30.8 8.2 43 195-245 17-62 (377)
319 PRK15454 ethanol dehydrogenase 45.0 93 0.002 31.1 7.9 44 194-245 36-82 (395)
320 PRK10415 tRNA-dihydrouridine s 44.9 1.9E+02 0.0042 28.0 9.9 44 154-197 151-203 (321)
321 PF03437 BtpA: BtpA family; I 44.7 48 0.001 31.4 5.5 47 145-191 22-83 (254)
322 cd06361 PBP1_GPC6A_like Ligand 44.6 54 0.0012 32.5 6.2 94 196-297 161-270 (403)
323 PRK09590 celB cellobiose phosp 44.5 1.3E+02 0.0028 24.4 7.3 78 80-194 1-81 (104)
324 cd00331 IGPS Indole-3-glycerol 44.3 2.1E+02 0.0045 25.6 9.5 79 156-244 35-125 (217)
325 cd08194 Fe-ADH6 Iron-containin 44.3 1.1E+02 0.0023 30.2 8.2 43 195-245 11-56 (375)
326 PF01094 ANF_receptor: Recepto 44.2 2.6E+02 0.0057 25.8 12.3 76 158-241 44-150 (348)
327 TIGR00423 radical SAM domain p 43.9 1.3E+02 0.0028 28.7 8.5 117 80-228 53-174 (309)
328 cd07362 HPCD_like Class III ex 43.8 2.8E+02 0.0062 26.1 11.1 39 157-195 98-142 (272)
329 TIGR03682 arCOG04112 arCOG0411 43.8 2E+02 0.0044 27.8 9.8 92 149-247 12-130 (308)
330 PRK14982 acyl-ACP reductase; P 43.6 3.3E+02 0.0072 26.8 12.3 97 146-247 73-188 (340)
331 TIGR00259 thylakoid_BtpA membr 43.6 61 0.0013 30.7 6.0 50 144-194 20-84 (257)
332 PLN02645 phosphoglycolate phos 43.5 2.2E+02 0.0047 27.2 10.0 80 154-245 49-136 (311)
333 COG1744 Med Uncharacterized AB 43.2 89 0.0019 30.7 7.4 107 43-179 119-234 (345)
334 cd07371 2A5CPDO_AB The alpha a 43.2 1.2E+02 0.0026 28.6 8.0 39 157-195 93-137 (268)
335 PRK13587 1-(5-phosphoribosyl)- 43.1 1.8E+02 0.004 26.8 9.1 121 157-294 36-170 (234)
336 cd04733 OYE_like_2_FMN Old yel 43.0 1.4E+02 0.0029 29.1 8.6 64 90-175 194-259 (338)
337 TIGR02717 AcCoA-syn-alpha acet 42.9 1.8E+02 0.004 29.5 9.8 112 179-294 261-379 (447)
338 cd06284 PBP1_LacI_like_6 Ligan 42.9 2.4E+02 0.0052 25.0 16.6 76 157-242 47-147 (267)
339 cd08176 LPO Lactadehyde:propan 42.6 1.1E+02 0.0025 30.0 8.1 45 193-245 14-61 (377)
340 PRK13802 bifunctional indole-3 42.4 4.8E+02 0.01 28.4 13.2 82 156-245 74-165 (695)
341 cd06390 PBP1_iGluR_AMPA_GluR1 42.4 2.3E+02 0.005 27.7 10.2 78 156-243 48-147 (364)
342 cd06377 PBP1_iGluR_NMDA_NR3 N- 42.4 2.7E+02 0.0059 27.9 10.7 40 154-194 70-112 (382)
343 PF02601 Exonuc_VII_L: Exonucl 42.2 1.2E+02 0.0027 28.9 8.1 88 79-194 13-113 (319)
344 cd07381 MPP_CapA CapA and rela 42.2 47 0.001 30.3 5.0 24 274-297 196-219 (239)
345 PRK11572 copper homeostasis pr 42.2 2.5E+02 0.0055 26.5 9.8 82 158-245 14-120 (248)
346 cd06276 PBP1_FucR_like Ligand- 42.1 2.2E+02 0.0047 25.7 9.4 111 198-326 106-229 (247)
347 cd04734 OYE_like_3_FMN Old yel 42.0 3.1E+02 0.0067 26.8 10.9 65 87-175 184-252 (343)
348 cd06365 PBP1_Pheromone_recepto 41.8 74 0.0016 32.2 6.8 42 196-245 161-205 (469)
349 TIGR01452 PGP_euk phosphoglyco 41.8 2.4E+02 0.0053 26.3 9.9 78 155-245 24-109 (279)
350 cd08193 HVD 5-hydroxyvalerate 41.0 1.2E+02 0.0027 29.7 8.1 43 195-245 14-59 (376)
351 cd01544 PBP1_GalR Ligand-bindi 41.0 2.7E+02 0.0059 25.0 14.9 122 196-328 101-248 (270)
352 TIGR01279 DPOR_bchN light-inde 41.0 1.7E+02 0.0037 29.3 9.1 78 214-293 273-351 (407)
353 PF02602 HEM4: Uroporphyrinoge 41.0 84 0.0018 28.0 6.4 92 152-245 29-145 (231)
354 TIGR03569 NeuB_NnaB N-acetylne 40.9 3.6E+02 0.0078 26.4 11.3 74 218-297 90-175 (329)
355 PRK01130 N-acetylmannosamine-6 40.7 2.7E+02 0.0059 25.0 9.7 38 154-194 25-62 (221)
356 PF02548 Pantoate_transf: Keto 40.4 2.5E+02 0.0054 26.8 9.5 124 158-295 29-185 (261)
357 PRK06801 hypothetical protein; 40.4 1.1E+02 0.0024 29.3 7.4 25 156-180 160-184 (286)
358 TIGR00853 pts-lac PTS system, 40.2 1.8E+02 0.004 22.9 7.8 77 80-195 3-82 (95)
359 PF03308 ArgK: ArgK protein; 40.2 1.2E+02 0.0027 28.9 7.4 94 80-178 29-134 (266)
360 PRK00286 xseA exodeoxyribonucl 40.1 1.2E+02 0.0027 30.4 8.1 36 209-245 130-167 (438)
361 PF05621 TniB: Bacterial TniB 40.1 3.6E+02 0.0078 26.2 12.7 190 79-289 60-277 (302)
362 TIGR01496 DHPS dihydropteroate 39.9 1.7E+02 0.0037 27.4 8.5 37 155-191 26-78 (257)
363 cd07038 TPP_PYR_PDC_IPDC_like 39.8 1.1E+02 0.0023 26.4 6.6 47 158-204 4-51 (162)
364 PRK07199 phosphoribosylpyropho 39.6 1.5E+02 0.0032 28.6 8.1 151 158-323 111-292 (301)
365 TIGR01087 murD UDP-N-acetylmur 39.6 1E+02 0.0023 30.6 7.4 70 164-245 61-133 (433)
366 PLN02495 oxidoreductase, actin 39.6 1.7E+02 0.0038 29.3 8.8 104 84-223 74-216 (385)
367 smart00851 MGS MGS-like domain 39.1 58 0.0013 25.0 4.4 30 197-243 4-33 (90)
368 cd04747 OYE_like_5_FMN Old yel 38.9 3.2E+02 0.0069 27.1 10.5 66 90-174 189-257 (361)
369 COG2247 LytB Putative cell wal 38.8 1.1E+02 0.0025 29.9 7.1 76 167-251 30-111 (337)
370 COG1861 SpsF Spore coat polysa 38.6 1.2E+02 0.0026 28.4 6.8 71 219-289 47-125 (241)
371 TIGR01304 IMP_DH_rel_2 IMP deh 38.6 1.4E+02 0.0029 29.9 7.8 53 155-207 145-210 (369)
372 PRK10528 multifunctional acyl- 38.4 2.5E+02 0.0053 24.5 8.9 66 88-172 50-115 (191)
373 PRK13602 putative ribosomal pr 38.2 1.7E+02 0.0036 22.6 6.7 47 156-204 18-67 (82)
374 COG1737 RpiR Transcriptional r 38.1 1.2E+02 0.0027 28.6 7.3 93 73-179 123-218 (281)
375 TIGR01521 FruBisAldo_II_B fruc 38.0 34 0.00073 33.9 3.5 26 156-181 175-200 (347)
376 cd06376 PBP1_mGluR_groupIII Li 38.0 4.3E+02 0.0093 26.5 11.6 24 217-240 174-200 (463)
377 cd05009 SIS_GlmS_GlmD_2 SIS (S 37.7 1.4E+02 0.0031 24.4 7.0 82 75-175 8-99 (153)
378 cd03522 MoeA_like MoeA_like. T 37.5 1.2E+02 0.0026 29.5 7.2 31 214-244 158-196 (312)
379 PF09989 DUF2229: CoA enzyme a 37.4 1.3E+02 0.0029 27.5 7.2 60 230-293 15-76 (221)
380 TIGR03572 WbuZ glycosyl amidat 37.4 1.5E+02 0.0032 26.8 7.5 78 155-242 33-123 (232)
381 cd00945 Aldolase_Class_I Class 37.3 60 0.0013 27.9 4.7 21 155-175 68-88 (201)
382 PLN02948 phosphoribosylaminoim 37.3 2.1E+02 0.0045 30.3 9.4 72 156-235 456-536 (577)
383 TIGR03551 F420_cofH 7,8-dideme 37.2 2.6E+02 0.0057 27.1 9.6 116 80-227 87-207 (343)
384 COG1570 XseA Exonuclease VII, 37.0 1.2E+02 0.0025 31.1 7.1 89 79-195 134-232 (440)
385 cd06293 PBP1_LacI_like_11 Liga 36.8 3.1E+02 0.0067 24.5 21.0 159 157-327 47-245 (269)
386 TIGR01919 hisA-trpF 1-(5-phosp 36.8 1.8E+02 0.004 27.0 8.1 118 157-292 36-169 (243)
387 KOG2882 p-Nitrophenyl phosphat 36.7 3.8E+02 0.0083 26.1 10.2 79 155-245 44-130 (306)
388 PF04723 GRDA: Glycine reducta 36.5 97 0.0021 26.7 5.5 73 215-296 5-78 (150)
389 PRK04284 ornithine carbamoyltr 36.4 65 0.0014 31.6 5.2 84 154-246 90-186 (332)
390 TIGR00736 nifR3_rel_arch TIM-b 36.4 67 0.0015 29.9 5.0 21 155-175 151-171 (231)
391 cd08551 Fe-ADH iron-containing 36.1 1.7E+02 0.0038 28.5 8.2 43 194-244 10-55 (370)
392 cd00408 DHDPS-like Dihydrodipi 35.8 1.5E+02 0.0033 27.6 7.5 81 83-192 35-127 (281)
393 PRK14024 phosphoribosyl isomer 35.7 3.3E+02 0.0072 25.0 9.6 119 155-291 35-165 (241)
394 cd07039 TPP_PYR_POX Pyrimidine 35.6 1.2E+02 0.0026 26.3 6.2 44 158-201 7-51 (164)
395 PF02776 TPP_enzyme_N: Thiamin 35.5 41 0.00088 29.1 3.3 44 157-200 7-51 (172)
396 PRK05627 bifunctional riboflav 35.4 4.2E+02 0.009 25.6 12.1 99 155-274 73-182 (305)
397 cd02810 DHOD_DHPD_FMN Dihydroo 35.3 95 0.0021 29.1 6.0 22 154-175 178-199 (289)
398 COG0036 Rpe Pentose-5-phosphat 35.1 3.7E+02 0.0081 24.9 12.9 130 154-293 18-198 (220)
399 cd00954 NAL N-Acetylneuraminic 35.1 1.4E+02 0.0031 28.1 7.2 80 83-192 39-132 (288)
400 cd00423 Pterin_binding Pterin 35.0 2E+02 0.0044 26.7 8.1 84 145-245 21-125 (258)
401 cd08187 BDH Butanol dehydrogen 35.0 2.1E+02 0.0045 28.3 8.6 29 217-245 30-62 (382)
402 COG0647 NagD Predicted sugar p 34.9 3.2E+02 0.0069 26.0 9.4 78 155-245 30-115 (269)
403 cd06370 PBP1_Speract_GC_like L 34.9 2.8E+02 0.0061 27.1 9.6 76 160-244 64-168 (404)
404 PRK02083 imidazole glycerol ph 34.8 2.9E+02 0.0064 25.4 9.1 41 155-195 156-204 (253)
405 cd06533 Glyco_transf_WecG_TagA 34.8 1.3E+02 0.0029 26.1 6.5 48 189-245 29-77 (171)
406 cd06328 PBP1_SBP_like_2 Peripl 34.7 4E+02 0.0086 25.1 12.7 30 216-245 137-169 (333)
407 KOG3406 40S ribosomal protein 34.6 85 0.0018 26.6 4.8 50 148-197 33-86 (134)
408 TIGR02321 Pphn_pyruv_hyd phosp 34.3 1.1E+02 0.0024 29.5 6.2 90 80-192 115-209 (290)
409 TIGR00237 xseA exodeoxyribonuc 34.3 2.1E+02 0.0045 29.1 8.6 81 196-292 105-194 (432)
410 TIGR00288 conserved hypothetic 34.2 3E+02 0.0064 24.2 8.4 61 232-293 71-137 (160)
411 cd01979 Pchlide_reductase_N Pc 34.0 2.8E+02 0.006 27.5 9.4 43 79-121 87-129 (396)
412 TIGR03572 WbuZ glycosyl amidat 34.0 2E+02 0.0044 26.0 7.8 40 155-194 156-203 (232)
413 PRK10444 UMP phosphatase; Prov 33.9 2E+02 0.0044 26.6 7.9 76 154-244 22-105 (248)
414 PRK06849 hypothetical protein; 33.8 1.3E+02 0.0027 29.6 6.8 81 216-297 5-88 (389)
415 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.8 1.3E+02 0.0029 24.0 5.9 26 154-179 62-87 (126)
416 PRK07565 dihydroorotate dehydr 33.7 2E+02 0.0044 27.8 8.1 54 155-208 117-192 (334)
417 COG1570 XseA Exonuclease VII, 33.6 2E+02 0.0043 29.5 8.1 39 208-247 129-170 (440)
418 cd08181 PPD-like 1,3-propanedi 33.5 2.3E+02 0.0049 27.7 8.5 43 194-245 13-59 (357)
419 PRK09283 delta-aminolevulinic 33.5 4.4E+02 0.0094 25.9 10.1 67 146-236 139-205 (323)
420 cd08192 Fe-ADH7 Iron-containin 33.4 1.9E+02 0.0042 28.2 8.1 43 194-244 11-56 (370)
421 cd02127 PA_hPAP21_like PA_hPAP 33.2 60 0.0013 26.8 3.8 51 155-205 48-105 (118)
422 PRK07565 dihydroorotate dehydr 33.2 4.5E+02 0.0098 25.4 12.0 22 154-176 179-200 (334)
423 cd06359 PBP1_Nba_like Type I p 33.2 4.1E+02 0.0089 24.9 12.6 37 158-194 57-95 (333)
424 TIGR00284 dihydropteroate synt 33.1 4.5E+02 0.0098 27.4 10.9 82 152-247 165-259 (499)
425 PRK04663 murD UDP-N-acetylmura 32.9 1.1E+02 0.0023 30.8 6.2 69 164-244 67-138 (438)
426 cd06371 PBP1_sensory_GC_DEF_li 32.9 3.6E+02 0.0078 26.3 9.9 28 217-244 134-164 (382)
427 cd04724 Tryptophan_synthase_al 32.8 4E+02 0.0086 24.6 13.7 61 157-243 96-157 (242)
428 cd05014 SIS_Kpsf KpsF-like pro 32.7 1.4E+02 0.0031 23.9 6.0 26 154-179 63-88 (128)
429 PRK13586 1-(5-phosphoribosyl)- 32.7 3.4E+02 0.0073 25.0 9.1 119 156-291 34-165 (232)
430 PRK07064 hypothetical protein; 32.7 1.2E+02 0.0026 31.2 6.7 83 158-244 10-96 (544)
431 PF03808 Glyco_tran_WecB: Glyc 32.6 3.3E+02 0.0072 23.6 9.1 79 80-190 48-128 (172)
432 PLN02446 (5-phosphoribosyl)-5- 32.6 3.8E+02 0.0082 25.5 9.4 116 156-291 47-182 (262)
433 PF00582 Usp: Universal stress 32.5 1E+02 0.0022 23.9 5.0 36 157-192 94-137 (140)
434 PRK14114 1-(5-phosphoribosyl)- 32.5 3E+02 0.0065 25.5 8.8 119 156-292 34-164 (241)
435 COG0541 Ffh Signal recognition 32.3 1.6E+02 0.0034 30.2 7.2 71 156-235 119-204 (451)
436 cd00381 IMPDH IMPDH: The catal 32.3 4.8E+02 0.01 25.3 11.4 51 158-208 99-158 (325)
437 cd08191 HHD 6-hydroxyhexanoate 32.2 2E+02 0.0043 28.4 8.0 29 217-245 24-55 (386)
438 cd04723 HisA_HisF Phosphoribos 32.2 3.3E+02 0.0071 24.9 8.9 76 156-241 39-125 (233)
439 PLN02617 imidazole glycerol ph 32.1 1.5E+02 0.0032 31.2 7.2 78 156-242 271-386 (538)
440 cd05005 SIS_PHI Hexulose-6-pho 31.9 2.3E+02 0.005 24.4 7.5 89 74-179 27-116 (179)
441 KOG1448 Ribose-phosphate pyrop 31.9 2E+02 0.0044 28.0 7.5 130 42-205 25-158 (316)
442 cd01821 Rhamnogalacturan_acety 31.8 2.3E+02 0.0049 24.5 7.5 59 146-204 88-162 (198)
443 TIGR00262 trpA tryptophan synt 31.8 4.3E+02 0.0094 24.7 14.8 62 157-244 107-169 (256)
444 COG2513 PrpB PEP phosphonomuta 31.8 2.3E+02 0.0049 27.4 7.8 89 80-192 118-206 (289)
445 TIGR00670 asp_carb_tr aspartat 31.7 77 0.0017 30.6 4.8 85 154-247 85-183 (301)
446 PRK03620 5-dehydro-4-deoxygluc 31.7 4.6E+02 0.01 25.0 17.0 49 155-203 91-154 (303)
447 PF02608 Bmp: Basic membrane p 31.6 2E+02 0.0043 27.4 7.6 93 74-194 120-219 (306)
448 PRK00286 xseA exodeoxyribonucl 31.6 1.6E+02 0.0035 29.6 7.3 88 80-195 135-231 (438)
449 PRK02472 murD UDP-N-acetylmura 31.6 1.1E+02 0.0025 30.4 6.2 69 165-245 68-139 (447)
450 TIGR00640 acid_CoA_mut_C methy 31.5 2.1E+02 0.0046 24.0 6.9 70 220-292 6-90 (132)
451 cd06375 PBP1_mGluR_groupII Lig 31.5 1.3E+02 0.0027 30.5 6.6 41 196-244 163-206 (458)
452 cd02072 Glm_B12_BD B12 binding 31.5 3.2E+02 0.0069 23.0 9.2 68 161-248 46-116 (128)
453 PRK08005 epimerase; Validated 31.4 3.5E+02 0.0076 24.7 8.8 107 158-292 74-191 (210)
454 PRK05927 hypothetical protein; 31.4 52 0.0011 32.4 3.6 28 81-108 94-121 (350)
455 PRK01033 imidazole glycerol ph 31.4 4.1E+02 0.0088 24.7 9.5 122 154-291 32-171 (258)
456 TIGR03127 RuMP_HxlB 6-phospho 31.2 3.2E+02 0.0069 23.5 8.3 89 74-179 24-113 (179)
457 PRK14805 ornithine carbamoyltr 31.1 96 0.0021 29.9 5.3 87 154-248 83-179 (302)
458 PLN02527 aspartate carbamoyltr 31.1 68 0.0015 31.0 4.3 83 154-245 86-183 (306)
459 cd04823 ALAD_PBGS_aspartate_ri 31.0 4E+02 0.0087 26.1 9.4 66 146-235 136-201 (320)
460 cd04817 PA_VapT_like PA_VapT_l 30.9 67 0.0014 27.5 3.8 51 155-205 75-130 (139)
461 PRK10423 transcriptional repre 30.6 3.6E+02 0.0077 25.0 9.1 29 215-245 56-91 (327)
462 PRK13111 trpA tryptophan synth 30.6 4E+02 0.0086 25.1 9.3 96 111-245 15-147 (258)
463 cd06388 PBP1_iGluR_AMPA_GluR4 30.5 5.2E+02 0.011 25.2 12.6 131 156-297 55-218 (371)
464 PF03481 SUA5: Putative GTP-bi 30.5 1.4E+02 0.0031 24.5 5.6 30 144-173 77-106 (125)
465 TIGR01460 HAD-SF-IIA Haloacid 30.5 2.5E+02 0.0054 25.5 7.8 75 155-242 20-102 (236)
466 PRK13265 glycine/sarcosine/bet 30.4 1.4E+02 0.003 25.9 5.4 73 215-296 6-79 (154)
467 PLN02540 methylenetetrahydrofo 30.4 4E+02 0.0087 28.2 10.0 20 270-289 246-265 (565)
468 cd06364 PBP1_CaSR Ligand-bindi 30.3 1.1E+02 0.0023 31.6 5.9 41 196-244 176-219 (510)
469 cd08185 Fe-ADH1 Iron-containin 30.2 2.5E+02 0.0054 27.6 8.3 43 194-245 13-59 (380)
470 cd00381 IMPDH IMPDH: The catal 30.2 1.1E+02 0.0024 29.7 5.7 16 156-171 147-162 (325)
471 TIGR01082 murC UDP-N-acetylmur 30.1 1.9E+02 0.0041 29.0 7.5 66 165-241 58-126 (448)
472 cd00384 ALAD_PBGS Porphobilino 30.1 4.2E+02 0.0092 25.9 9.4 66 146-235 131-196 (314)
473 TIGR00696 wecB_tagA_cpsF bacte 29.9 2.6E+02 0.0056 24.8 7.5 48 189-245 31-79 (177)
474 cd08186 Fe-ADH8 Iron-containin 29.9 2.8E+02 0.0062 27.3 8.6 29 217-245 28-60 (383)
475 cd06354 PBP1_BmpA_PnrA_like Pe 29.9 2.6E+02 0.0056 25.4 7.9 38 157-194 49-87 (265)
476 KOG1053 Glutamate-gated NMDA-t 29.9 5.9E+02 0.013 28.8 11.2 80 154-240 89-172 (1258)
477 cd00958 DhnA Class I fructose- 29.8 2.2E+02 0.0048 25.7 7.4 34 158-192 149-183 (235)
478 PRK00994 F420-dependent methyl 29.8 4.8E+02 0.01 24.8 9.3 100 80-207 2-110 (277)
479 cd06578 HemD Uroporphyrinogen- 29.8 2.1E+02 0.0045 25.2 7.0 44 165-208 49-98 (239)
480 PRK09197 fructose-bisphosphate 29.7 85 0.0018 31.1 4.7 78 156-244 192-276 (350)
481 TIGR00640 acid_CoA_mut_C methy 29.7 3.4E+02 0.0073 22.8 8.5 65 159-246 47-111 (132)
482 PF02601 Exonuc_VII_L: Exonucl 29.5 1.5E+02 0.0033 28.3 6.4 30 216-245 15-46 (319)
483 PF01408 GFO_IDH_MocA: Oxidore 29.4 2.8E+02 0.006 21.7 7.5 19 160-178 57-75 (120)
484 COG0434 SgcQ Predicted TIM-bar 29.2 93 0.002 29.4 4.6 53 144-196 26-94 (263)
485 PRK08192 aspartate carbamoyltr 29.1 89 0.0019 30.7 4.8 41 154-196 90-130 (338)
486 PF14639 YqgF: Holliday-juncti 29.0 1.5E+02 0.0031 25.7 5.6 103 48-163 23-141 (150)
487 cd04501 SGNH_hydrolase_like_4 29.0 3.5E+02 0.0077 22.8 9.9 66 88-172 38-103 (183)
488 TIGR02026 BchE magnesium-proto 28.9 3.7E+02 0.0081 27.6 9.5 81 159-266 57-139 (497)
489 cd06381 PBP1_iGluR_delta_like 28.8 4.5E+02 0.0097 25.7 9.8 37 157-194 55-92 (363)
490 PRK02255 putrescine carbamoylt 28.8 90 0.002 30.7 4.8 87 154-246 87-184 (338)
491 PF08659 KR: KR domain; Inter 28.8 2.9E+02 0.0063 23.8 7.7 64 82-178 2-65 (181)
492 PF09419 PGP_phosphatase: Mito 28.8 90 0.0019 27.6 4.3 40 153-192 63-110 (168)
493 TIGR03249 KdgD 5-dehydro-4-deo 28.3 5.2E+02 0.011 24.5 16.7 94 81-204 41-153 (296)
494 PRK09196 fructose-1,6-bisphosp 28.2 51 0.0011 32.6 2.9 27 155-181 176-202 (347)
495 KOG2666 UDP-glucose/GDP-mannos 28.2 2.9E+02 0.0063 27.5 7.9 115 54-185 85-219 (481)
496 cd07035 TPP_PYR_POX_like Pyrim 28.2 1.4E+02 0.003 25.0 5.3 42 158-200 4-46 (155)
497 PRK11815 tRNA-dihydrouridine s 28.2 1.1E+02 0.0025 29.7 5.3 44 154-197 153-214 (333)
498 cd02803 OYE_like_FMN_family Ol 28.2 2.1E+02 0.0046 27.2 7.2 21 155-175 231-251 (327)
499 cd04824 eu_ALAD_PBGS_cysteine_ 28.1 5.5E+02 0.012 25.2 9.8 66 146-235 135-201 (320)
500 PRK13399 fructose-1,6-bisphosp 27.9 55 0.0012 32.4 3.1 28 155-182 176-203 (347)
No 1
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-57 Score=408.56 Aligned_cols=224 Identities=26% Similarity=0.348 Sum_probs=203.2
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
||+|||||||||+||+.|||+|++.+++. .|.+.++.+.+++|++.-. +.+.+|+...++|.+
T Consensus 1 mk~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~--------------q~~~~w~~~~~~L~~ 66 (230)
T COG1794 1 MKTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETL--------------QRAGEWDEAGEILID 66 (230)
T ss_pred CceeEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHH--------------HccCccccHHHHHHH
Confidence 79999999999999999999999999964 8888888888888874110 236788888999999
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
.++.|+++|||+|++||||+|.|+|++++.+++|+|||+|+|+++++..|.+ |||||||.+||+++||++.|
T Consensus 67 ~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~k--------kvgLLgT~~Tm~~~fY~~~l 138 (230)
T COG1794 67 AAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAK--------KVGLLGTRFTMEQGFYRKRL 138 (230)
T ss_pred HHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCc--------eeEEeeccchHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887 99999999999999999999
Q ss_pred HhcCCeEEecCccchhhchHHH-HHHHhcCChH-HHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCceechH
Q 020005 237 QHEGFEVVLPDKATMEHTLIPA-LDALNRKDVE-GARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDPLLKKCIDPM 314 (332)
Q Consensus 237 ~~~Gi~vv~P~~~~q~~~l~~~-i~~ik~g~~~-~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~~~ipvID~~ 314 (332)
.++|+++++|++++|+. ++.+ +++++.|+.. .+++.+.+++++|.++|||+|||||||+|+++++.+. .+|+||++
T Consensus 139 ~~~gievvvPdd~~q~~-v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~~d~-~vP~~Dtt 216 (230)
T COG1794 139 EEKGIEVVVPDDDEQAE-VNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQDDS-SVPVFDTT 216 (230)
T ss_pred HHCCceEecCCHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEeccchheeecCCcc-cCcccccH
Confidence 99999999999998874 4443 5679999985 6899999999999999999999999999999988664 57999999
Q ss_pred HHHHHHHHHHHHh
Q 020005 315 DALARSTIKWVKS 327 (332)
Q Consensus 315 ~~lA~a~v~~a~~ 327 (332)
++||+++++++++
T Consensus 217 ~iha~aav~~aL~ 229 (230)
T COG1794 217 AIHAEAAVELALE 229 (230)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 2
>PRK10200 putative racemase; Provisional
Probab=100.00 E-value=9.9e-54 Score=394.36 Aligned_cols=224 Identities=19% Similarity=0.303 Sum_probs=194.8
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
||+|||||||||+||++||++|++.+++. +|.+.+++++|.+||+... . ..++|+...+.|.+
T Consensus 1 mk~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~--------~------~~~~~~~~~~~l~~ 66 (230)
T PRK10200 1 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEEC--------Q------RRGEWDKTGDILAE 66 (230)
T ss_pred CCeEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHH--------H------HCCCcchHHHHHHH
Confidence 78999999999999999999999999873 7999999999999986221 0 12345556667889
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
.+++|+++|||+|||||||+|+|++++++.+++|||||++++.+++++.+.+ |||||||++|+++++|++.|
T Consensus 67 ~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~--------~VglLaT~~Ti~s~~Y~~~l 138 (230)
T PRK10200 67 AALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGMT--------RVALLGTRYTMEQDFYRGRL 138 (230)
T ss_pred HHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCCC--------eEEEeccHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999988876554 99999999999999999999
Q ss_pred Hhc-CCeEEecCccchhhchHHHH-HHHhcCCh-HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCceech
Q 020005 237 QHE-GFEVVLPDKATMEHTLIPAL-DALNRKDV-EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDPLLKKCIDP 313 (332)
Q Consensus 237 ~~~-Gi~vv~P~~~~q~~~l~~~i-~~ik~g~~-~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~~~ipvID~ 313 (332)
++. |++++.|+.++|+. ++..| ++++.|.. +.+++.+.++++.|.++|+|+|||||||||++++..+. .+|+|||
T Consensus 139 ~~~~g~~~~~p~~~~q~~-v~~~i~~~l~~G~~~~~~~~~l~~~l~~l~~~g~d~vILGCTelpll~~~~~~-~~~~iD~ 216 (230)
T PRK10200 139 TEQFSINCLIPEADERAK-INQIIFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERS-VLPVFDT 216 (230)
T ss_pred HHhcCCeEeCCCHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCcCHHHhCCcccC-CCCeEch
Confidence 866 99999999877764 45445 48899986 55778999999999989999999999999999976543 3589999
Q ss_pred HHHHHHHHHHHHHh
Q 020005 314 MDALARSTIKWVKS 327 (332)
Q Consensus 314 ~~~lA~a~v~~a~~ 327 (332)
+++||+++++++++
T Consensus 217 ~~~la~~~v~~~~~ 230 (230)
T PRK10200 217 AAIHAEDAVAFMLS 230 (230)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999863
No 3
>TIGR00035 asp_race aspartate racemase.
Probab=100.00 E-value=4.1e-53 Score=389.60 Aligned_cols=224 Identities=26% Similarity=0.439 Sum_probs=197.4
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhcc--C-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGE--E-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~--d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
||+|||||||||+||++||++|++.+++ | +|++++++|+|++||+.... ..++|+.+.+.+.+
T Consensus 1 m~~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~--------------~~~~~~~~~~~l~~ 66 (229)
T TIGR00035 1 ENMIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYI--------------LGRGEDRPRPILID 66 (229)
T ss_pred CCeEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHH--------------hcCCcchHHHHHHH
Confidence 7899999999999999999999999986 3 89999999999999863210 12355567788899
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
.+++|+++|||+|+|||||+|+|++++++.+++||+||++++++++++.+.+ |||||||++|+++++|++.|
T Consensus 67 ~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~--------~VgvLaT~~T~~s~~y~~~l 138 (229)
T TIGR00035 67 IAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVK--------KAGLLGTKGTMKDGVYEREM 138 (229)
T ss_pred HHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCC--------EEEEEecHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999776654 99999999999999999999
Q ss_pred HhcCCeEEecCccchhhchHHHH-HHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCceechHH
Q 020005 237 QHEGFEVVLPDKATMEHTLIPAL-DALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDPLLKKCIDPMD 315 (332)
Q Consensus 237 ~~~Gi~vv~P~~~~q~~~l~~~i-~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~~~ipvID~~~ 315 (332)
+++|++++.|+.+.|+. ++..+ +.+++|+.+.+++.+.++++.|.++|+|+|||||||||++.++. ...+|+|||++
T Consensus 139 ~~~g~~v~~p~~~~~~~-i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~iILgCTelpll~~~~-~~~~pviD~~~ 216 (229)
T TIGR00035 139 KKHGIEIVTPDKEEQEA-IMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGIILGCTELSLILKAD-DLDVPLIDPMD 216 (229)
T ss_pred HHCCCEEECCCHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEEeCcchHhhcccc-cCCCCeEchHH
Confidence 99999999998877763 44444 57888987778889999999999899999999999999998733 33579999999
Q ss_pred HHHHHHHHHHHh
Q 020005 316 ALARSTIKWVKS 327 (332)
Q Consensus 316 ~lA~a~v~~a~~ 327 (332)
+||+++++|+++
T Consensus 217 ~~a~~~v~~a~~ 228 (229)
T TIGR00035 217 VIAEAAVKLALE 228 (229)
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 4
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=100.00 E-value=4.5e-35 Score=273.51 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=169.4
Q ss_pred EEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 020005 83 VGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (332)
Q Consensus 83 IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (332)
|||+. |+|.++ .++.|.+..+.. + ++-+-| .-.+||. .++.+++.+++.+.+++|
T Consensus 1 IgvfDSGiGGlt---v~~~l~~~~p~~-~--~iy~~D-----------~~~~PYG-------~ks~~~i~~~~~~~~~~L 56 (251)
T TIGR00067 1 IGVFDSGVGGLS---VLKEIRKQLPKE-H--YIYVGD-----------TKRFPYG-------EKSPEFILEYVLELLTFL 56 (251)
T ss_pred CEEEeCCccHHH---HHHHHHHHCCCC-C--EEEEec-----------CCCCCCC-------CCCHHHHHHHHHHHHHHH
Confidence 68888 999999 677777666643 3 333222 1245553 467789999999999999
Q ss_pred H-HcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc
Q 020005 162 E-KAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239 (332)
Q Consensus 162 e-~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~ 239 (332)
+ +.|||+||||||||| .+++++++.+++|||||++++++.+.+.. ..++||||||++|+++++|++.++++
T Consensus 57 ~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~a~~~~-------~~~~IgvLAT~~Ti~s~~y~~~i~~~ 129 (251)
T TIGR00067 57 KERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKAAIRLT-------ANGRVLVIATNATIKSNAYHEALKEI 129 (251)
T ss_pred HHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHHHHHhC-------CCCeEEEEeCHHHHhhhHHHHHHHHh
Confidence 9 999999999999999 45999999999999999999999987642 23499999999999999999999999
Q ss_pred CCeEEecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCceechH
Q 020005 240 GFEVVLPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKKCIDPM 314 (332)
Q Consensus 240 Gi~vv~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ipvID~~ 314 (332)
|.++++|....++ + ++.+|.|.. +.+.+.+..+++.+.++++|+|||||||||++.+... +..+++|||.
T Consensus 130 ~~~~~v~~~~~~~--l---v~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~ 204 (251)
T TIGR00067 130 ANDLLVEMLACPE--L---VPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSG 204 (251)
T ss_pred CCCCEEEecCCHH--H---HHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCH
Confidence 9888887644332 3 568888877 4477789999999988899999999999999976532 2346899999
Q ss_pred HHHHHHHHHHHH
Q 020005 315 DALARSTIKWVK 326 (332)
Q Consensus 315 ~~lA~a~v~~a~ 326 (332)
+++|++++++..
T Consensus 205 ~~la~~~~~~l~ 216 (251)
T TIGR00067 205 VHTARRTAWLLE 216 (251)
T ss_pred HHHHHHHHHHHh
Confidence 999999998863
No 5
>PRK00865 glutamate racemase; Provisional
Probab=100.00 E-value=1e-31 Score=252.16 Aligned_cols=207 Identities=18% Similarity=0.222 Sum_probs=163.8
Q ss_pred cCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
.+.|||+. |+|.++ .++.|.+..+.. ++-++-++ -.+||. ..+.+++.+++.+.+
T Consensus 5 ~~~IgvfDSGiGGLt---vl~~i~~~lp~~-~~iY~~D~-------------~~~PYG-------~ks~~~i~~~~~~~~ 60 (261)
T PRK00865 5 NAPIGVFDSGVGGLT---VLREIRRLLPDE-HIIYVGDT-------------ARFPYG-------EKSEEEIRERTLEIV 60 (261)
T ss_pred CCeEEEEECCccHHH---HHHHHHHHCCCC-CEEEEecC-------------CCCCCC-------CCCHHHHHHHHHHHH
Confidence 35799999 999999 777777777654 33333322 235553 467889999999999
Q ss_pred HHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~ 237 (332)
++|++.|||+|||||||+|. +++++++.+++||+| ++++++.+.+.. ..++||||||++|+++++|++.++
T Consensus 61 ~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig-i~~a~~~a~~~~-------~~~~igVLaT~~Ti~s~~y~~~i~ 132 (261)
T PRK00865 61 EFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG-IVPAIKPAAALT-------RNGRIGVLATPGTVKSAAYRDLIA 132 (261)
T ss_pred HHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe-eHHHHHHHHHhc-------CCCeEEEEECHHHhhchHHHHHHH
Confidence 99999999999999999996 689999999999999 777777766521 234999999999999999999999
Q ss_pred hcC--CeEE-ecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCc
Q 020005 238 HEG--FEVV-LPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKK 309 (332)
Q Consensus 238 ~~G--i~vv-~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ip 309 (332)
++| +++. .|..+.+ +.++.|.. +...+.+.++++.+.++|+|+|||||||||++.+... +..+|
T Consensus 133 ~~~~~~~v~~~~~~~lv--------~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~ 204 (261)
T PRK00865 133 RFAPDCQVESLACPELV--------PLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVT 204 (261)
T ss_pred HhCCCCEEEEecCHHHH--------HHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCE
Confidence 986 6654 5665433 23555543 4567789999999988899999999999999876532 33479
Q ss_pred eechHHHHHHHHHHHHH
Q 020005 310 CIDPMDALARSTIKWVK 326 (332)
Q Consensus 310 vID~~~~lA~a~v~~a~ 326 (332)
+|||++++|+.++++..
T Consensus 205 vIDp~~~~a~~~~~~l~ 221 (261)
T PRK00865 205 LIDSGEAIARRVARLLE 221 (261)
T ss_pred EECCHHHHHHHHHHHHh
Confidence 99999999999998875
No 6
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.3e-28 Score=227.91 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=166.0
Q ss_pred cCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
.++|||+. |+|.++ ++|.|.+..+.+ ++-++-++ --+||. +.+.++|.++..+.+
T Consensus 5 ~~~IgvFDSGVGGLs---Vlrei~~~LP~e-~~iY~~D~-------------a~~PYG-------~ks~e~I~~~~~~i~ 60 (269)
T COG0796 5 QPPIGVFDSGVGGLS---VLREIRRQLPDE-DIIYVGDT-------------ARFPYG-------EKSEEEIRERTLEIV 60 (269)
T ss_pred CCeEEEEECCCCcHH---HHHHHHHHCCCC-cEEEEecC-------------CCCCCC-------CCCHHHHHHHHHHHH
Confidence 45899999 999999 999999888765 44444433 235663 567889999999999
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~ 237 (332)
++|.+.+++.+|||||||... +++||+++++||++++ +.++.+.+.. .+++||||||++|+++.+|++.+.
T Consensus 61 ~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi-Paik~A~~~t-------~~~~IgViaT~~Tvks~~y~~~i~ 132 (269)
T COG0796 61 DFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVI-PAIKPAVALT-------RNGRIGVIATPATVKSNAYRDLIA 132 (269)
T ss_pred HHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec-cchHHHHHhc-------cCCeEEEEeccchhccHHHHHHHH
Confidence 999999999999999999987 8999999999999999 7777777653 456899999999999999999999
Q ss_pred hc--CCeEEe-cCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCc
Q 020005 238 HE--GFEVVL-PDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKK 309 (332)
Q Consensus 238 ~~--Gi~vv~-P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ip 309 (332)
+. +.+|.. +++. +. +.+++|.. +.+++.+++....+...++|++||||||||++.+.+. +..++
T Consensus 133 ~~~~~~~V~~la~p~-----lV---~lvE~g~~~~~~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~ 204 (269)
T COG0796 133 RFAPDCEVESLACPE-----LV---PLVEEGIRGGPVALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVA 204 (269)
T ss_pred HhCCCCEEEEecCcc-----hH---HHHhcccccCHHHHHHHHHHhcchhccCCCEEEEeCcCcHHHHHHHHHHhCCCce
Confidence 65 555543 3322 43 45566665 3367788888888888899999999999999976542 34589
Q ss_pred eechHHHHHHHHHHHH
Q 020005 310 CIDPMDALARSTIKWV 325 (332)
Q Consensus 310 vID~~~~lA~a~v~~a 325 (332)
+|||....|+++.+..
T Consensus 205 lids~~~~a~~~~~~L 220 (269)
T COG0796 205 LIDSGAETARRLARLL 220 (269)
T ss_pred EeCCHHHHHHHHHHHh
Confidence 9999999999987764
No 7
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=99.93 E-value=5.6e-26 Score=205.25 Aligned_cols=205 Identities=23% Similarity=0.316 Sum_probs=154.2
Q ss_pred EeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 020005 86 VGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAG 165 (332)
Q Consensus 86 iGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~G 165 (332)
||||||.++..|+++|.+..+......+.+.+.+.+|+++... + ...++ +.+.+.+.++.|++.|
T Consensus 1 Ig~i~p~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~p~~~~~~--~------------~~~~~-~~~~~~~~~~~l~~~g 65 (216)
T PF01177_consen 1 IGVISPNSNLTVERELRRMLPAREGQEVYFHDTRGFPDRIKEE--D------------AGMSA-ILDRLIEAAEKLEKAG 65 (216)
T ss_dssp EEEESSSTTHHHHHHHHHHSTTSCCTEEEEEETTTSCTSHHHH--H------------HHHHH-HHHHHHHHHHHHHHTT
T ss_pred CEEEEchHHHHHHHHHHHHhccccCCEEEEEeCCCCCCccHHH--h------------cchHH-HHHHHHHHHHHHHhCC
Confidence 5778999999999999999987611233333322255332210 0 00122 5667888999999999
Q ss_pred CcEEEEeCCCchhhHHHHh-hhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc-CC--
Q 020005 166 ARCIVMPCHLSHIWHDEVC-KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-GF-- 241 (332)
Q Consensus 166 ad~IvI~CNTaH~~~d~l~-~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi-- 241 (332)
+|+|+++|||+|+++++++ +.+++||+++++++++++.+ +.+ |||||+|..+..+++|++.++++ |+
T Consensus 66 ~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~~a~~~~~~~-~~~--------ri~vl~t~~~~~~~~~~~~~~~~~gi~~ 136 (216)
T PF01177_consen 66 VDAIVIACNSAHPFVDELRKERVGIPVVGIVEAALEAAKA-GGK--------RIGVLTTYTTEKSPLYEEFIEEAAGIDD 136 (216)
T ss_dssp ESEEEESSHHHHHHHHHHHHHHHSSEEEESHHHHHHHHHH-TSS--------EEEEEESHHHHHHTHHHHHHHHCTTEEC
T ss_pred CCEEEEcCCchhhhHHHHhhhcCceEEEeccHHHHHHHHh-cCC--------EEEEEecCcccchHHHHHHHHHhcCCcH
Confidence 9999999999999999999 99999999999999998888 665 99999999999999999999998 97
Q ss_pred eEEecCccchhhchHHHH-HHHhcCChHH-HHHHHHHHHHHHH-hCCCCEEEECCCCcccCCCCC----CCCCCceechH
Q 020005 242 EVVLPDKATMEHTLIPAL-DALNRKDVEG-ARNLLRIALQVLL-VRAVNTVILASDDMQDLLPPD----DPLLKKCIDPM 314 (332)
Q Consensus 242 ~vv~P~~~~q~~~l~~~i-~~ik~g~~~~-a~~~l~~~~~~L~-~~gad~VILGCTElpli~~~~----~~~~ipvID~~ 314 (332)
+++- .+...+ +.++.|..+. ..+.+.+.++++. +.|+|+||||||+|+++++.. ...++|+|||.
T Consensus 137 ~~~~--------~i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~ 208 (216)
T PF01177_consen 137 EVVA--------GIHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSN 208 (216)
T ss_dssp EEEE--------EEEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHH
T ss_pred HHHH--------HHHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccH
Confidence 3322 111112 3444566543 4677888888775 789999999999999874321 23368999999
Q ss_pred HHHHHHHH
Q 020005 315 DALARSTI 322 (332)
Q Consensus 315 ~~lA~a~v 322 (332)
++++++++
T Consensus 209 ~~~~~~~l 216 (216)
T PF01177_consen 209 QAAAWAAL 216 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999864
No 8
>PRK07475 hypothetical protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=194.58 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~ 228 (332)
.+.+.+.++++.|+++|||+|+++|||+|+|++++++.+++|++++..++++.+++... ..+|||||+|.+|
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~------~~~kIGILtt~~t-- 133 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALLP------AGQKVGILTADAS-- 133 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhcc------CCCeEEEEeCCch--
Confidence 35667889999999999999999999999999999999999999999999998888631 2349999999999
Q ss_pred hhhHHHHHHhcCCe--E---EecCccchhhchHHHH-HHHhcCChHHHHHHHHHHHHHHHh--CCCCEEEECCCCcccCC
Q 020005 229 AGFYQEKLQHEGFE--V---VLPDKATMEHTLIPAL-DALNRKDVEGARNLLRIALQVLLV--RAVNTVILASDDMQDLL 300 (332)
Q Consensus 229 s~lY~~~l~~~Gi~--v---v~P~~~~q~~~l~~~i-~~ik~g~~~~a~~~l~~~~~~L~~--~gad~VILGCTElpli~ 300 (332)
.+|++.|++.|++ + +.|+.+.|.. ++..| ...+.++.+++.+.+.++++.|.+ .|+|+|||+|||||.+.
T Consensus 134 -~l~~~~l~~~Gi~~~~~~~~~~g~e~~~~-~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~ 211 (245)
T PRK07475 134 -SLTPAHLLAVGVPPDTSSLPIAGLEEGGE-FRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYA 211 (245)
T ss_pred -hhhHHHHHhCCCCCCCccccccCcccchH-HHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHH
Confidence 4899999999996 3 5677777754 55444 344445666677788888998874 49999999999999876
Q ss_pred CCCC-CCCCceechHHHHH
Q 020005 301 PPDD-PLLKKCIDPMDALA 318 (332)
Q Consensus 301 ~~~~-~~~ipvID~~~~lA 318 (332)
+... ..++|+||+..+..
T Consensus 212 ~~le~~~glPViDs~t~~~ 230 (245)
T PRK07475 212 AAIQRATGLPVFDIVTLIN 230 (245)
T ss_pred HHHHHhcCCCEEeHHHHHH
Confidence 5432 24579999988753
No 9
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=99.38 E-value=8.7e-12 Score=112.88 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=108.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~ 237 (332)
+..-+..|+|+|+|+|+.- +.++.+++.+.+|+++|.++.+..+..-| +|++|+.|..-.. ....+.++
T Consensus 62 i~~~~~~GvdaiiIaCf~D-Pgl~~~Re~~~~PviGi~eAsv~~A~~vg---------rrfsViTtt~rs~-~il~~lv~ 130 (230)
T COG4126 62 IADGEEQGVDAIIIACFSD-PGLAAARERAAIPVIGICEASVLAALFVG---------RRFSVITTTERSR-PILEELVR 130 (230)
T ss_pred hhcccccCCcEEEEEecCC-hHHHHHHHHhCCCceehhHHHHHHHHHhc---------ceEEEEecCcccH-HHHHHHHH
Confidence 3445678999999999987 99999999999999999999998877654 3899999855433 45667778
Q ss_pred hcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHH-HHHHHHHHhCCCCEEEECCCCcccCCCCCC-CCCCceechHH
Q 020005 238 HEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLL-RIALQVLLVRAVNTVILASDDMQDLLPPDD-PLLKKCIDPMD 315 (332)
Q Consensus 238 ~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l-~~~~~~L~~~gad~VILGCTElpli~~~~~-~~~ipvID~~~ 315 (332)
.+|+.-..+.-..-+..+ -+++. +.++++..+ .++.+.+.+.|+|+|||||+.|+-+.++.+ ..++|+||++.
T Consensus 131 ~~g~s~~~~~vrstdl~v----L~l~~-~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~ 205 (230)
T COG4126 131 SYGLSRHCRSVRSTDLPV----LALEG-PPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVA 205 (230)
T ss_pred hcCccccccceeeCCCCc----ccccC-ChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchH
Confidence 888765554321111111 13433 444555544 445556677899999999999998876643 34689999998
Q ss_pred HHHHHHHHH
Q 020005 316 ALARSTIKW 324 (332)
Q Consensus 316 ~lA~a~v~~ 324 (332)
+.++.+...
T Consensus 206 Aav~~a~~L 214 (230)
T COG4126 206 AAVKLAEGL 214 (230)
T ss_pred HHHHHHHHH
Confidence 876665544
No 10
>PRK10481 hypothetical protein; Provisional
Probab=98.93 E-value=8.2e-09 Score=95.02 Aligned_cols=150 Identities=14% Similarity=0.032 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
...++...+++.+..|++.|+|+|++.|..--+-++..+.-...|...| ..++.++.. .+|+||+..-.
T Consensus 71 s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i-~~lv~Al~~----------g~riGVitP~~ 139 (224)
T PRK10481 71 SKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRIL-PPLVAAIVG----------GHQVGVIVPVE 139 (224)
T ss_pred EHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhH-HHHHHHhcC----------CCeEEEEEeCH
Confidence 4567888999999999999999999999986344566666666787776 455454443 13999998755
Q ss_pred hhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCccc-CCCC-C
Q 020005 226 ILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQD-LLPP-D 303 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpl-i~~~-~ 303 (332)
.......++ +...|+++...... . + . ...+.+.++.+.|.+.|+|+||++||.|+. +.+. .
T Consensus 140 ~qi~~~~~k-w~~~G~~v~~~~as---p-----y-------~-~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le 202 (224)
T PRK10481 140 EQLAQQAQK-WQVLQKPPVFALAS---P-----Y-------H-GSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQ 202 (224)
T ss_pred HHHHHHHHH-HHhcCCceeEeecC---C-----C-------C-CCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHH
Confidence 443343444 44449887642210 0 0 0 122345667778888999999999999994 2222 1
Q ss_pred CCCCCceechHHHHHHHHHH
Q 020005 304 DPLLKKCIDPMDALARSTIK 323 (332)
Q Consensus 304 ~~~~ipvID~~~~lA~a~v~ 323 (332)
...++|+|++..+.|+.+.+
T Consensus 203 ~~lg~PVI~~n~a~ar~~~e 222 (224)
T PRK10481 203 KALDVPVLLSNVLVARLAAE 222 (224)
T ss_pred HHHCcCEEcHHHHHHHHHHH
Confidence 24568999999999987654
No 11
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=98.48 E-value=7.2e-07 Score=83.11 Aligned_cols=159 Identities=11% Similarity=0.162 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHH-HHcCCcEEEEeCCCchhh------HHHHhh-hCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEE
Q 020005 150 IVENLRRKRVFL-EKAGARCIVMPCHLSHIW------HDEVCK-GCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVL 221 (332)
Q Consensus 150 i~~~l~~~~~~L-e~~Gad~IvI~CNTaH~~------~d~l~~-~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlL 221 (332)
+...+...+..| ..+++|+|+..|-+.+.+ .+++++ ..++|+++...++.++++..|.+ ||+|+
T Consensus 55 m~~~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~--------RIalv 126 (239)
T TIGR02990 55 MQPRLTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVR--------RISLL 126 (239)
T ss_pred HhhhHHHHHHHhcCCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCC--------EEEEE
Confidence 334444444444 448999999999998764 345554 34799999999999999999887 99987
Q ss_pred echhhhc-hhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccC-
Q 020005 222 AKNAILT-AGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDL- 299 (332)
Q Consensus 222 aT~~T~~-s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli- 299 (332)
.. ++-. +....+.|++.|++|+--..-... +..+-+.+ ..+.+.+.+..+...++|+|++.||-|+-+
T Consensus 127 TP-Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~-------~~~~ia~i--~p~~i~~~~~~~~~~~aDAifisCTnLrt~~ 196 (239)
T TIGR02990 127 TP-YTPETSRPMAQYFAVRGFEIVNFTCLGLT-------DDREMARI--SPDCIVEAALAAFDPDADALFLSCTALRAAT 196 (239)
T ss_pred CC-CcHHHHHHHHHHHHhCCcEEeeeeccCCC-------CCceeeec--CHHHHHHHHHHhcCCCCCEEEEeCCCchhHH
Confidence 65 5422 344667789999999753111110 00001112 123345555555567999999999999865
Q ss_pred -CCC-CCCCCCceechHHHHHHHHHHHHH
Q 020005 300 -LPP-DDPLLKKCIDPMDALARSTIKWVK 326 (332)
Q Consensus 300 -~~~-~~~~~ipvID~~~~lA~a~v~~a~ 326 (332)
+++ +...++|||++.++.+-.+++.+.
T Consensus 197 vi~~lE~~lGkPVlsSNqat~W~~Lr~~G 225 (239)
T TIGR02990 197 CAQRIEQAIGKPVVTSNQATAWRCLRLCG 225 (239)
T ss_pred HHHHHHHHHCCCEEEHHHHHHHHHHHHcC
Confidence 233 234568999999999999998875
No 12
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.26 E-value=4.8e-06 Score=75.29 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCC
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---------~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~ 215 (332)
++-.++-.+...++..|.++|+|+|+-.|-++..+ ...+++..++|++.-.-++++.++..+.+
T Consensus 47 EeL~~M~~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~------- 119 (238)
T COG3473 47 EELLKMESYTERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQ------- 119 (238)
T ss_pred HHHHHHHHHHHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcc-------
Confidence 34445666667778889999999999999998764 35677778999999999999999998875
Q ss_pred ceEEEEechhhhc-hhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCC
Q 020005 216 LRIGVLAKNAILT-AGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASD 294 (332)
Q Consensus 216 ~rVGlLaT~~T~~-s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCT 294 (332)
||.|| |+++.+ ++.-.+.|+.+|++++--.. . .+-+.++-|..+. ..+.++.+.+..-++|+|+.-||
T Consensus 120 -ri~vl-TPY~~evn~~e~ef~~~~Gfeiv~~~~--L-----gi~dn~eigr~~P--~~~y~lAk~~~~~~~DaiFiSCT 188 (238)
T COG3473 120 -RISVL-TPYIDEVNQREIEFLEANGFEIVDFKG--L-----GITDNLEIGRQEP--WAVYRLAKEVFTPDADAIFISCT 188 (238)
T ss_pred -eEEEe-ccchhhhhhHHHHHHHhCCeEEEEeec--c-----CCcccchhcccCh--HHHHHHHHHhcCCCCCeEEEEee
Confidence 77665 667654 34456778999999975211 1 1123444455422 12344445666789999999999
Q ss_pred CcccCC--CC-CCCCCCceechHHHHHHHHHHHHHhhc
Q 020005 295 DMQDLL--PP-DDPLLKKCIDPMDALARSTIKWVKSAE 329 (332)
Q Consensus 295 Elpli~--~~-~~~~~ipvID~~~~lA~a~v~~a~~~~ 329 (332)
-|+-+- .. ++..++|+|-+.++-+=.+++...-..
T Consensus 189 nlRt~eii~~lE~~~G~PVvsSN~AT~W~~Lr~~g~~~ 226 (238)
T COG3473 189 NLRTFEIIEKLERDTGVPVVSSNQATLWMALRLIGLRE 226 (238)
T ss_pred ccccHHHHHHHHHHhCCceeeccHHHHHHHHHHcCCcc
Confidence 998542 22 234568999999998888887764443
No 13
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=97.40 E-value=0.0056 Score=56.45 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec---hHHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV---SECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I---ve~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
+...+...+++.++.|++.|+|.|++-|-.--+ .+. .+.|+|.- +..+++.+.. ..+|||+.
T Consensus 68 s~~~v~~~lq~~i~~le~~G~d~illlCTG~F~---~l~--~~~~lleP~ril~~lV~al~~----------~~~vGViv 132 (221)
T PF07302_consen 68 SKKKVEPRLQACIAQLEAQGYDVILLLCTGEFP---GLT--ARNPLLEPDRILPPLVAALVG----------GHQVGVIV 132 (221)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCC---CCC--CCcceeehHHhHHHHHHHhcC----------CCeEEEEe
Confidence 456788999999999999999999998875322 222 23445543 3333333322 24899998
Q ss_pred chhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCC
Q 020005 223 KNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPP 302 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~ 302 (332)
-...-.....+ .++..+.++..-.. .......+.+.++.+.|.++|+|.|||-|-.|.--.++
T Consensus 133 P~~eQ~~~~~~-kW~~l~~~~~~a~a----------------sPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~ 195 (221)
T PF07302_consen 133 PLPEQIAQQAE-KWQPLGNPVVVAAA----------------SPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRD 195 (221)
T ss_pred cCHHHHHHHHH-HHHhcCCCeEEEEe----------------CCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHH
Confidence 75554433333 34444544433100 00001234577788889999999999999999854322
Q ss_pred C--CCCCCceechHHHHHHHHHHH
Q 020005 303 D--DPLLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 303 ~--~~~~ipvID~~~~lA~a~v~~ 324 (332)
. +..++|+|=+..+.|+.+-+.
T Consensus 196 ~~~~~~g~PVlLsr~lvAr~~~EL 219 (221)
T PF07302_consen 196 IVQRALGKPVLLSRTLVARLAAEL 219 (221)
T ss_pred HHHHHhCCCEEeHHHHHHHHHHHH
Confidence 1 234579999988888876554
No 14
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=96.65 E-value=0.044 Score=51.77 Aligned_cols=203 Identities=14% Similarity=0.190 Sum_probs=112.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
++||+| +... +-.||..+++..... ....+++++- ..+.+.- +.
T Consensus 2 ~~IGvi--vp~~-~npff~~ii~gIe~~a~~~Gy~l~l~~t-------------------------~~~~~~e-----~~ 48 (279)
T PF00532_consen 2 KTIGVI--VPDI-SNPFFAEIIRGIEQEAREHGYQLLLCNT-------------------------GDDEEKE-----EY 48 (279)
T ss_dssp CEEEEE--ESSS-TSHHHHHHHHHHHHHHHHTTCEEEEEEE-------------------------TTTHHHH-----HH
T ss_pred CEEEEE--ECCC-CCcHHHHHHHHHHHHHHHcCCEEEEecC-------------------------CCchHHH-----HH
Confidence 577777 3322 556788887776542 5566666550 1122211 33
Q ss_pred HHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.+++.+.+.+ ..+..+.+. ++|+|-+ ...+.+++.+.|++
T Consensus 49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~-------- 119 (279)
T PF00532_consen 49 IELLLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHR-------- 119 (279)
T ss_dssp HHHHHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccC--------
Confidence 45788999999999988777 446666655 5555433 23466778888876
Q ss_pred e-EEEEechhh---hchhh--HHHHHHhcCCeE----E-ecCccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHHH
Q 020005 217 R-IGVLAKNAI---LTAGF--YQEKLQHEGFEV----V-LPDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQ 279 (332)
Q Consensus 217 r-VGlLaT~~T---~~s~l--Y~~~l~~~Gi~v----v-~P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~ 279 (332)
| |++++.+.. ...++ |++.++++|+++ + ..+.. .+. -..++ +.++.+ +++. ......-+++
T Consensus 120 ~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~-~~~-g~~~~~~ll~~~p~idai~~~nd~~A~ga~~ 197 (279)
T PF00532_consen 120 RPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFD-YES-GYEAARELLESHPDIDAIFCANDMMAIGAIR 197 (279)
T ss_dssp STEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSS-HHH-HHHHHHHHHHTSTT-SEEEESSHHHHHHHHH
T ss_pred CeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCC-HHH-HHHHHHHHHhhCCCCEEEEEeCHHHHHHHHH
Confidence 8 999997543 33344 889999999832 1 22221 111 01112 234444 2111 1233344555
Q ss_pred HHHhCC----CCEEEECCCCcccCCCC-------CCCCCCceechH-HHHHHHHHHHHHh
Q 020005 280 VLLVRA----VNTVILASDDMQDLLPP-------DDPLLKKCIDPM-DALARSTIKWVKS 327 (332)
Q Consensus 280 ~L~~~g----ad~VILGCTElpli~~~-------~~~~~ipvID~~-~~lA~a~v~~a~~ 327 (332)
.+.+.| -+-|+.+|+.+-.+-+- .....+..||.. ..+.+.+.+...+
T Consensus 198 ~l~~~gr~~ip~di~~~~~~v~g~d~~~~~~~~~~~~~~lt~i~~~~~~~G~~a~~~l~~ 257 (279)
T PF00532_consen 198 ALRERGRLKIPEDIVSGFDSVVGFDNLEDPDFSTLEQPPLTTIQQPAYEMGRQAAEMLLE 257 (279)
T ss_dssp HHHHTT-TCTTTEEEECSCCCGGHHHCCTCCT-SCCSCCEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccChhheeeeccchhhccccccccccccCCCeeEEecCCCchHHHHHHHHHH
Confidence 666666 56676666654433111 112235677754 5566666555544
No 15
>PRK00865 glutamate racemase; Provisional
Probab=95.94 E-value=0.083 Score=49.74 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=68.1
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||+|-.+...+ .+|++..+.... ...+.....|...+.+ ..+ ..+.+...+.+.+.+
T Consensus 109 ~~~~igVLaT~~Ti~s-~~y~~~i~~~~~--~~~v~~~~~~~lv~~i-e~g--------------~~~~~~~~~~l~~~l 170 (261)
T PRK00865 109 RNGRIGVLATPGTVKS-AAYRDLIARFAP--DCQVESLACPELVPLV-EAG--------------ILGGPVTLEVLREYL 170 (261)
T ss_pred CCCeEEEEECHHHhhc-hHHHHHHHHhCC--CCEEEEecCHHHHHHH-hCC--------------CcCCHHHHHHHHHHH
Confidence 4579999975544333 456666654422 2333333333322211 100 011234555677777
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCC--CCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCS--VPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~--iPii~Ive~t~~~l~~~ 205 (332)
+.|++.|+|.|++.|--...+.+.+++.++ +|+|+-.+++++.+...
T Consensus 171 ~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 171 APLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVARL 219 (261)
T ss_pred HHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHHHHHHHH
Confidence 888888999999999765556788888654 99999999999887653
No 16
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=95.55 E-value=2.3 Score=41.25 Aligned_cols=209 Identities=16% Similarity=0.176 Sum_probs=111.9
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++= - .-+-.||-.+++..... ....+++.+-. .+.+.. .
T Consensus 57 ~s~~Ig~i~--p-~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~-------------------------~~~~~e----~ 104 (333)
T COG1609 57 RTKTIGLVV--P-DITNPFFAEILKGIEEAAREAGYSLLLANTD-------------------------DDPEKE----R 104 (333)
T ss_pred CCCEEEEEe--C-CCCCchHHHHHHHHHHHHHHcCCEEEEECCC-------------------------CCHHHH----H
Confidence 356788873 2 22226777777666542 56777776611 112222 3
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+..+.|.+.++|.|++.....+ ..++.+.+. ++|++-+ ...+++++.+.|++
T Consensus 105 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~------- 176 (333)
T COG1609 105 EYLETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHR------- 176 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCc-------
Confidence 3446788999999999883333 334454443 6666554 33467788888776
Q ss_pred ceEEEEechh---hhc--hhhHHHHHHhcCCeE---Eec-CccchhhchHHHH-HHHhcCC--hHH----HHHHHHHHHH
Q 020005 216 LRIGVLAKNA---ILT--AGFYQEKLQHEGFEV---VLP-DKATMEHTLIPAL-DALNRKD--VEG----ARNLLRIALQ 279 (332)
Q Consensus 216 ~rVGlLaT~~---T~~--s~lY~~~l~~~Gi~v---v~P-~~~~q~~~l~~~i-~~ik~g~--~~~----a~~~l~~~~~ 279 (332)
|||+++.+. +.. ..=|.+.++++|+.. .+. ..-..+. -.... +.+..+. .+. .......+++
T Consensus 177 -~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~-g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~ 254 (333)
T COG1609 177 -RIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEES-GYEAAERLLARGEPRPTAIFCANDLMALGALR 254 (333)
T ss_pred -eEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHH-HHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHH
Confidence 999999863 212 233788899998763 222 1111111 11112 2232221 111 1223333444
Q ss_pred HHHhCC----CCEEEECCCCcccCCCCCCCCCCceechHHHHHHHHHHHHHhhcc
Q 020005 280 VLLVRA----VNTVILASDDMQDLLPPDDPLLKKCIDPMDALARSTIKWVKSAEK 330 (332)
Q Consensus 280 ~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID~~~~lA~a~v~~a~~~~~ 330 (332)
.+.+.| -|.-|.|--+.++.. -..+..-.+--+...+.+.+++......+
T Consensus 255 ~~~~~g~~vP~disviGfDd~~~~~-~~~P~LTTv~~~~~~~G~~A~~~Ll~~i~ 308 (333)
T COG1609 255 ALRELGLRVPEDLSVIGFDDIELAR-FLTPPLTTVRQPIEELGRRAAELLLERIN 308 (333)
T ss_pred HHHHcCCCCCCeeEEEEecChhhhh-hCCCCCeeecCCHHHHHHHHHHHHHHHHc
Confidence 444444 367888888855322 11222223445677777777777665543
No 17
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=94.91 E-value=3.4 Score=38.91 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=84.8
Q ss_pred HHHHHHHcCCcEEEEeC-CC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVMPC-HL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~C-NT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.|.+.++|.|++.. +. ...++..+.+ .++|++-+ ...+++++.+.|++
T Consensus 109 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~v~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~r------- 180 (328)
T PRK11303 109 CAEHLLQRQVDALIVSTSLPPEHPFYQRLQN-DGLPIIALDRALDREHFTSVVSDDQDDAEMLAESLLKFPAE------- 180 (328)
T ss_pred HHHHHHHcCCCEEEEcCCCCCChHHHHHHHh-cCCCEEEECCCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC-------
Confidence 34567788999988753 32 2444555543 46776543 13345667776665
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeE--EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEV--VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v--v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
+|++++.... .+..-|.+.++++|+.+ +.......+. -...++. ++.+. .+. .......+++.|.
T Consensus 181 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 258 (328)
T PRK11303 181 -SILLLGALPELSVSFEREQGFRQALKDDPREVHYLYANSFEREA-GAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLL 258 (328)
T ss_pred -eEEEEeCccccccHHHHHHHHHHHHHHcCCCceEEEeCCCChHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 9999975432 12234788899888753 2222111111 1111222 33322 211 1223334556666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.|. |.-|.|....++.. ...+ .+..|+ +.+.+++.+++.....
T Consensus 259 ~~g~~vP~disv~gfd~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 307 (328)
T PRK11303 259 ERPGELPSDLAIATFGDNELLD-FLPC-PVNAVAQQHRLIAERALELALAA 307 (328)
T ss_pred HcCCCCCCceEEEEeCChHHHh-ccCC-CceEEecCHHHHHHHHHHHHHHH
Confidence 6654 67778887766432 1122 123444 5677888888776554
No 18
>TIGR00035 asp_race aspartate racemase.
Probab=94.81 E-value=0.11 Score=47.81 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=62.5
Q ss_pred eEEEEechhhhc-hhhHHHHHHhc----C---CeEEe-cCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCC
Q 020005 217 RIGVLAKNAILT-AGFYQEKLQHE----G---FEVVL-PDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVN 287 (332)
Q Consensus 217 rVGlLaT~~T~~-s~lY~~~l~~~----G---i~vv~-P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad 287 (332)
+|||+|--|... ..||++..+.. + ...++ .+....+ ....+..+..++....+.+.++.|.+.|+|
T Consensus 3 ~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~d-----r~~~~~~~~~~~~~~~l~~~~~~L~~~g~d 77 (229)
T TIGR00035 3 MIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPD-----RTAYILGRGEDRPRPILIDIAVKLENAGAD 77 (229)
T ss_pred eEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHH-----HHHHHhcCCcchHHHHHHHHHHHHHHcCCC
Confidence 799997555443 35666655332 2 22222 2221111 123444455455677888899999999999
Q ss_pred EEEECCCCcccCCCCC-CCCCCceechHHHHHHHH
Q 020005 288 TVILASDDMQDLLPPD-DPLLKKCIDPMDALARST 321 (332)
Q Consensus 288 ~VILGCTElpli~~~~-~~~~ipvID~~~~lA~a~ 321 (332)
.||++|.=.+..++.. ...++|+|...+..++++
T Consensus 78 ~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~ 112 (229)
T TIGR00035 78 FIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAV 112 (229)
T ss_pred EEEECCccHHHHHHHHHHhCCCCEechHHHHHHHH
Confidence 9999997666555443 224579999888888765
No 19
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=94.67 E-value=4.2 Score=38.79 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=83.3
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCC-eeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVP-FLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iP-ii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++.... ....+..+.+ ++| ++-+ ...+++++.+.|++
T Consensus 108 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~--~~p~vV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~-------- 177 (343)
T PRK10727 108 IEQLIRHRCAALVVHAKMIPDAELASLMK--QIPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHT-------- 177 (343)
T ss_pred HHHHHhcCCCEEEEecCCCChHHHHHHHh--cCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------
Confidence 445677889988876432 2233444443 344 3221 12345566666654
Q ss_pred eEEEEechhh---h--chhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI---L--TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T---~--~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L 281 (332)
||++++.... . +..=|.+.++++|+++ +.......+. -...++ .+..+. .+. .......+++.|
T Consensus 178 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al 256 (343)
T PRK10727 178 RIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESG-GEQAMTELLGRGRNFTAVACYNDSMAAGAMGVL 256 (343)
T ss_pred cEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence 9999975321 1 2233788899988753 2221111110 011122 233332 111 123334555667
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
.+.|. |.-|.|+...+... ...+. +..|+ +...+++.+++......+
T Consensus 257 ~~~G~~vP~disVigfD~~~~~~-~~~p~-lttv~~~~~~~g~~A~~~l~~~i~ 308 (343)
T PRK10727 257 NDNGIDVPGEISLIGFDDVLVSR-YVRPR-LTTVRYPIVTMATQAAELALALAD 308 (343)
T ss_pred HHcCCCCCcceeEEeecCcHHHH-hcCCC-CeeeeCCHHHHHHHHHHHHHHHhc
Confidence 77774 78899999887432 12221 33444 566788888887765533
No 20
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=94.64 E-value=4.2 Score=38.60 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=80.8
Q ss_pred HHHHHHcCCcEEEEeCCCch--hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH--~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++.-.+.. ..++.+++ .++|++-+ ...+++++.+.|++
T Consensus 113 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 183 (342)
T PRK10014 113 FSTLLNQGVDGVVIAGAAGSSDDLREMAEE-KGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQ-------- 183 (342)
T ss_pred HHHHHhCCCCEEEEeCCCCCcHHHHHHHhh-cCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC--------
Confidence 34577788998777543322 33455443 35666533 23455667776654
Q ss_pred eEEEEechhhh-----chhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAIL-----TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T~-----~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L 281 (332)
+|++++...+. +..=|.+.++++|+++ +.-.....+. ....+. .++.+. .+. .......+++.+
T Consensus 184 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~~l 262 (342)
T PRK10014 184 RIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQ-AAEAITALLRHNPTISAVVCYNETIAMGAWFGL 262 (342)
T ss_pred EEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHH-HHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHH
Confidence 99999754321 1223788898888753 1111111111 111122 233321 111 112222333444
Q ss_pred HhCCC-------------CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRAV-------------NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~ga-------------d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.|. |.-|.|+...+... ...+ .+..|+ +...+++.+++...+.
T Consensus 263 ~~~g~~vp~~~~~~~~p~di~vigfd~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~L~~~ 321 (342)
T PRK10014 263 LRAGRQSGESGVDRYFEQQVALAAFTDVPEAE-LDDP-PLTWASTPAREIGRTLADRMMQR 321 (342)
T ss_pred HHcCCCCCCccccccccCceEEEEecCchHHh-cCCC-CceeeecCHHHHHHHHHHHHHHH
Confidence 44442 88999999887532 1122 234444 4567777777766553
No 21
>PRK07475 hypothetical protein; Provisional
Probab=94.26 E-value=0.51 Score=44.10 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHH--cCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHH
Q 020005 146 DDSLIVENLRRKRVFLEK--AGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA 199 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~--~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~ 199 (332)
|.++..+.+.+.++.|.+ .|+|+|++.|--...+.+++++.+++||++....+.
T Consensus 175 d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t~~~ 230 (245)
T PRK07475 175 DNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVTLIN 230 (245)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHHHHH
Confidence 444455567777788864 499999999999998889999999999999877664
No 22
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=94.23 E-value=0.19 Score=44.98 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHH-HHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeechHHHHHHH
Q 020005 150 IVENLRRKRVFL-EKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVSECVAKEL 202 (332)
Q Consensus 150 i~~~l~~~~~~L-e~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~Ive~t~~~l 202 (332)
..+.+.+.+++| ++.|+|+|++.|.-.+ .+.+++.+..++||++-.+++++.+
T Consensus 159 ~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~~~~ 215 (216)
T PF01177_consen 159 QIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAAWAA 215 (216)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHHHHh
Confidence 455566666677 4899999999999999 4567888888999999999888765
No 23
>PRK10481 hypothetical protein; Provisional
Probab=94.01 E-value=0.14 Score=47.38 Aligned_cols=51 Identities=31% Similarity=0.277 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechHHHHHHHHH
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELKE 204 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive~t~~~l~~ 204 (332)
+.+.++.|...|||+|++.|-..+ ...+.+++.+++|||....++++-+.+
T Consensus 171 l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar~~~e 222 (224)
T PRK10481 171 LIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVARLAAE 222 (224)
T ss_pred HHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHHHHHH
Confidence 456778899999999999999988 557899999999999998888776654
No 24
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=93.85 E-value=0.73 Score=43.21 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
...+.+.+.++.|.+.|+|.+++.|-=.....+++++.+ ++|+|+-.+.+++.+.+.
T Consensus 156 ~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la~~~~~~ 214 (251)
T TIGR00067 156 YALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTARRTAWL 214 (251)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHHHHHHHH
Confidence 344556666777878899999999985555568888765 478999999999887663
No 25
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=93.75 E-value=6.1 Score=37.13 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=80.5
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.+++.+.. .-...+.+....++|++-+ ...+++++.+.|++ +
T Consensus 105 ~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~~L~~~G~~--------~ 176 (327)
T PRK10423 105 LETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGYT--------R 176 (327)
T ss_pred HHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------e
Confidence 345777899987775432 2223333443235666543 23344566666654 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
|++++.... .+..=|.+.++++|+++ +.......+. -...+.. ++.+. .+. .......+++.+.
T Consensus 177 I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~ 255 (327)
T PRK10423 177 IACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNG-GFDAMQQLLALPLRPQAVFTGNDAMAVGVYQALY 255 (327)
T ss_pred EEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCCCChHH-HHHHHHHHhcCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 999965322 12233788888888753 2221111110 1111222 32222 111 1222334556666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
+.|. |.-|.|+-..++.. ...+ .+..|+ +.+.+++.+++....
T Consensus 256 ~~g~~vP~dvsvigfd~~~~~~-~~~p-~lttv~~~~~~~g~~A~~~l~~ 303 (327)
T PRK10423 256 QAGLSVPQDIAVIGYDDIELAR-YMTP-PLTTIHQPKDELGELAIDVLIH 303 (327)
T ss_pred HcCCCCCCceEEEEeCChhHHh-hCCC-CCceeeCCHHHHHHHHHHHHHH
Confidence 6664 77888888776432 1112 234444 456667766766544
No 26
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=93.65 E-value=0.16 Score=46.95 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=53.8
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC-CCCCceechHHHHHHHHHH
Q 020005 260 DALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD-PLLKKCIDPMDALARSTIK 323 (332)
Q Consensus 260 ~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~-~~~ipvID~~~~lA~a~v~ 323 (332)
..-+.|+.+++.+.+..++..|.+.|||.|++.|-=+..++++.. ..++|+|+-.++-|+++..
T Consensus 50 ~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~ 114 (230)
T COG1794 50 TLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKA 114 (230)
T ss_pred HHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHh
Confidence 455667888888999999999999999999999999998887643 4568999999998888765
No 27
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=93.61 E-value=4.9 Score=37.86 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHc-CCcEEEEeCCCch--hhHHHHhhhCCCCeeech-------------------------HHHHHHHHHhcCC
Q 020005 157 KRVFLEKA-GARCIVMPCHLSH--IWHDEVCKGCSVPFLHVS-------------------------ECVAKELKEANMK 208 (332)
Q Consensus 157 ~~~~Le~~-Gad~IvI~CNTaH--~~~d~l~~~~~iPii~Iv-------------------------e~t~~~l~~~g~k 208 (332)
.++.|.+. ++++|+.+..+.+ ...+ +-+..++|+|... ...++.+.+.|.+
T Consensus 59 ~~~~l~~~~~v~avig~~~s~~~~~~~~-~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 137 (336)
T cd06326 59 NTRKLIEDDKVFALFGYVGTPTTAAALP-LLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLK 137 (336)
T ss_pred HHHHHHhhcCcEEEEeCCCchhHHHHHH-HHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCc
Confidence 34456664 8998888754432 2233 3334577777641 1234445555544
Q ss_pred CCcCCCCceEEEEechhh---hchhhHHHHHHhcCCeEE
Q 020005 209 PLEAGSPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv 244 (332)
||+++..+.. ....-|++.+++.|++++
T Consensus 138 --------~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~ 168 (336)
T cd06326 138 --------RIAVFYQDDAFGKDGLAGVEKALAARGLKPV 168 (336)
T ss_pred --------eEEEEEecCcchHHHHHHHHHHHHHcCCCeE
Confidence 8999976532 223446778888887754
No 28
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=93.59 E-value=3.9 Score=39.60 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=20.9
Q ss_pred ceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
+||++++.+... ....+++.+++.|++++.
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~ 167 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVG 167 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEe
Confidence 389999865322 234577888888998864
No 29
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=93.52 E-value=6.8 Score=36.94 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=83.3
Q ss_pred HHHHHHcCCcEEEEeCCC--chhhHHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++.... ....+..+++ .++|++-+- ..+++++.+.|++
T Consensus 109 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~-------- 179 (327)
T TIGR02417 109 IENLLARQVDALIVASCMPPEDAYYQKLQN-EGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHAD-------- 179 (327)
T ss_pred HHHHHHcCCCEEEEeCCCCCChHHHHHHHh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCC--------
Confidence 455778899987775332 2344555543 366765432 2344566666654
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE--EecCccchhhchHHHHHH-HhcC--ChHH----HHHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV--VLPDKATMEHTLIPALDA-LNRK--DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v--v~P~~~~q~~~l~~~i~~-ik~g--~~~~----a~~~l~~~~~~L~ 282 (332)
||++++.... .+..=|.+.++++|++. +.......+. -...+.. ++.+ ..+. .......+++.|.
T Consensus 180 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~Ai~~~~D~~A~g~~~al~ 258 (327)
T TIGR02417 180 EFWYLGAQPELSVSRDRLAGFRQALKQATLEVEWVYGGNYSRES-GYQMFAKLCARLGRLPQALFTTSYTLLEGVLDYML 258 (327)
T ss_pred eEEEEeCcccchhHHHHHHHHHHHHHHcCCChHhEEeCCCChHH-HHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHH
Confidence 9999974332 12233788888888753 2221111111 1111222 3322 1111 1122334455555
Q ss_pred hCC---CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRA---VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~g---ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.| -|.-|.|+-..++.. ...+ .+..|+ +.+.+++.++++....
T Consensus 259 ~~g~vP~dvsvigfd~~~~~~-~~~p-~lTti~~~~~~~g~~a~~~l~~~ 306 (327)
T TIGR02417 259 ERPLLDSQLHLATFGDNYLLD-FLPL-PINSVAQQHRQLAWHALELALAA 306 (327)
T ss_pred HcCCCCCcceEEEECCchHHH-ccCC-CceEEeCCHHHHHHHHHHHHHHH
Confidence 555 377888887765332 1122 234454 5677888888877654
No 30
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=93.39 E-value=0.28 Score=45.17 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=45.8
Q ss_pred CHHHHHHHHH-HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHH
Q 020005 146 DDSLIVENLR-RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELK 203 (332)
Q Consensus 146 d~~~i~~~l~-~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~ 203 (332)
+++.....+. +..+.++..|||+|++-|--+....++|++.++||||+=+-+.++.+.
T Consensus 154 ~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~Aav~~a~ 212 (230)
T COG4126 154 PPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVAAAVKLAE 212 (230)
T ss_pred ChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchHHHHHHHH
Confidence 3333333333 445778899999999999999999999999999999998888776544
No 31
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.33 E-value=0.21 Score=47.35 Aligned_cols=43 Identities=21% Similarity=0.418 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
..+.+.++.|+++||++|+++|-. +....+|.+.+++|+++|.
T Consensus 160 ~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 160 KKLLEDALALEEAGAQLLVLECVP-VELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCCCCEEeec
Confidence 446677889999999999999999 6778999999999999984
No 32
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=93.20 E-value=1 Score=42.74 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHH----------HHhhh-------------CCCCeeechHHHHHHH
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHD----------EVCKG-------------CSVPFLHVSECVAKEL 202 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d----------~l~~~-------------~~iPii~Ive~t~~~l 202 (332)
|++.........+..+++.|.+ ||.+|.|-...+. ++++. ....++|+.+-..+.+
T Consensus 51 d~~~~~~l~~~nl~~~~~~g~~-iv~~C~~C~~~l~~~~~~l~~~~~~~~~v~~~~~~~g~~~~~~~~v~~~~e~L~~~~ 129 (290)
T TIGR03288 51 DLKTWLTLAARNLVIAEEMGKD-ILTVCNGCYGSLFEANHLLKENPELRDKVNEKLAEIGREYKGTINVRHLAEFLYKDI 129 (290)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC-EEEECHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCccCCCcceeeHHHHHHHHH
Confidence 5554555555666777888998 8889965333221 11111 1367999988877643
Q ss_pred HHhcCC-CCcCCCCceEEEEech-----------hh-hchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHH
Q 020005 203 KEANMK-PLEAGSPLRIGVLAKN-----------AI-LTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEG 269 (332)
Q Consensus 203 ~~~g~k-~~~~~~~~rVGlLaT~-----------~T-~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~ 269 (332)
....++ ....+-+.+|.+---= +. -.....++.++.-|++++....... --..-..+..+..+.
T Consensus 130 ~~~~l~~~~~~~~~~kV~yh~pC~l~r~~~~~~~~~~~~p~~l~~ll~~~g~~~v~~~~~~~---CCG~gG~~~~~~~~~ 206 (290)
T TIGR03288 130 GVDKIKEKVTKPLNLNVAVHYGCHLLKPSDERHLGSPERPKILDELVEATGAKSVDYKDKMM---CCGAGGGVRSRDLDV 206 (290)
T ss_pred hHHHHHHHhcCCCCceEEEeCcccccccccccCCCCccchHHHHHHHHHhCceeeecCCCCc---ccCCCccccccCHHH
Confidence 221110 0000112356553110 10 1111224455555777664321100 000000112223344
Q ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCC---------CCCCCceechHHHHHHHH
Q 020005 270 ARNLLRIALQVLLVRAVNTVILASDDMQDLLPPD---------DPLLKKCIDPMDALARST 321 (332)
Q Consensus 270 a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~---------~~~~ipvID~~~~lA~a~ 321 (332)
+.+.....++.+.+.|+|.||-.|..=-.-++.. ....++++++++.|+++.
T Consensus 207 s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~al 267 (290)
T TIGR03288 207 ALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLAM 267 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHHc
Confidence 5666677778888899999999998754433210 112478999999999886
No 33
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=93.16 E-value=4.5 Score=38.11 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=47.3
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-H-HHHhhhCCCCeeech--------------------------HHHHHHHHHhcCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-H-DEVCKGCSVPFLHVS--------------------------ECVAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~-d~l~~~~~iPii~Iv--------------------------e~t~~~l~~~g~k 208 (332)
+++|.+ .++++|+-+..+.-.. . ..+.+..++|+|... ...++.+.+.+.
T Consensus 59 a~~li~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~- 137 (312)
T cd06346 59 ATKLVNVDGVPGIVGAACSGVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGY- 137 (312)
T ss_pred HHHHHhhcCCCEEEccccchhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCC-
Confidence 344544 5899888775544332 3 556666778877531 223344444443
Q ss_pred CCcCCCCceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 209 PLEAGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+||++|......- ...+++.+++.|++++.
T Consensus 138 -------~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~ 170 (312)
T cd06346 138 -------KSVATTYINNDYGVGLADAFTKAFEALGGTVTN 170 (312)
T ss_pred -------CeEEEEEccCchhhHHHHHHHHHHHHcCCEEEE
Confidence 3899988654432 23467778888988763
No 34
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=93.08 E-value=6.5 Score=35.49 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=79.5
Q ss_pred HHHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.+++ +++..-..+..+++ .++|++-+- ..+++++.+.|.+ +
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~ 118 (268)
T cd06273 48 ARKLLERGVDGLALIGLDHSPALLDLLAR-RGVPYVATWNYSPDSPYPCVGFDNREAGRLAARHLIALGHR--------R 118 (268)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------e
Confidence 44577778998776 44433233455433 467776542 3455666666554 9
Q ss_pred EEEEechh------hhchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHH
Q 020005 218 IGVLAKNA------ILTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 218 VGlLaT~~------T~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L 281 (332)
|++++... ..+..-|.+.++++|+++ +.......+. ....+.. ++.+. .+. .......+++.+
T Consensus 119 i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l 197 (268)
T cd06273 119 IAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIAD-GRAALRQLLEQPPRPTAVICGNDVLALGALYEA 197 (268)
T ss_pred EEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHH-HHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHH
Confidence 99997432 122333778888888543 2221111110 1111223 33322 111 122233344555
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|.-|.|....+.... ..+ .+..|+ +...+++.+++.....
T Consensus 198 ~~~g~~~p~~i~vig~d~~~~~~~-~~~-~l~~i~~~~~~~g~~a~~~l~~~ 247 (268)
T cd06273 198 RRLGLSVPEDLSIVGFDDIDGSAE-LEP-ALTTVRVPAREIGRIAAEALLAL 247 (268)
T ss_pred HHcCCCCCCceEEEecCChhHHhh-cCC-CceeeeCCHHHHHHHHHHHHHHH
Confidence 5554 3556777666664321 112 134454 3566777777766554
No 35
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=93.08 E-value=4 Score=38.92 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeech-----------------------------HHHHHHHHHhc
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS-----------------------------ECVAKELKEAN 206 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv-----------------------------e~t~~~l~~~g 206 (332)
++.|.+ .|+++|+-|..+.... .-++.+..++|+|+.. ..++..++..-
T Consensus 59 ~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~ 138 (344)
T cd06345 59 FERLVSQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETL 138 (344)
T ss_pred HHHHhccCCceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhh
Confidence 344444 4888888777665543 3455556677777531 11222232200
Q ss_pred CCCCcCCCCceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 207 MKPLEAGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 207 ~k~~~~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
.+ ..+.+||+++..+...- ...+++.+++.|++++.
T Consensus 139 ~~---~~~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~ 177 (344)
T cd06345 139 VD---KHGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVS 177 (344)
T ss_pred cc---cCCCceEEEEecCchhhhHHHHHHHHHHHHcCCeEEE
Confidence 00 01224899988765432 23456777777888754
No 36
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.97 E-value=6.9 Score=35.44 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=79.1
Q ss_pred HHHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++ +++.... ..++. ..++|++.+ ...+++++.+.|.+ +
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~-~~~~~-~~~iPvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~g~~--------~ 117 (263)
T cd06280 48 LELMEEERVTGVIFAPTRATLR-RLAEL-RLSFPVVLIDRAGPAGRVDAVVLDNRAAARTLVEHLVAQGYR--------R 117 (263)
T ss_pred HHHHHhCCCCEEEEeCCCCCch-HHHHH-hcCCCEEEECCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------e
Confidence 45677888997766 4443322 23332 346776654 23455667766654 8
Q ss_pred EEEEechhh----hchhhHHHHHHhcCCeEEe--cCccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHHHHHhCC
Q 020005 218 IGVLAKNAI----LTAGFYQEKLQHEGFEVVL--PDKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQVLLVRA 285 (332)
Q Consensus 218 VGlLaT~~T----~~s~lY~~~l~~~Gi~vv~--P~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~~L~~~g 285 (332)
|+++++... .+..-|++.++++|+.... .... .+. ..+.+ +.++.+. ... .......+++.+.+.|
T Consensus 118 i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g 195 (263)
T cd06280 118 IGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFVAPT-AEA-AEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAG 195 (263)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhcccC-HHH-HHHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcC
Confidence 998865422 1123367788887765311 1111 111 11111 2233332 111 1222334455565555
Q ss_pred ----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 286 ----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 286 ----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
-|.-|.|.-..++. ....+ .+..|+ +...+++.+++...++
T Consensus 196 ~~~p~di~iig~d~~~~~-~~~~p-~lt~i~~~~~~~g~~a~~~l~~~ 241 (263)
T cd06280 196 LRIPQDLALAGFDNDPWT-ELVGP-GITVIEQPVEEIGRAAMSLLLER 241 (263)
T ss_pred CCCCCcEEEEEeCChhHH-HhcCC-CceEecCCHHHHHHHHHHHHHHH
Confidence 47778887776643 22222 234454 4566777777766554
No 37
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=92.88 E-value=5.3 Score=37.41 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHH-cCCcEEEEeCCCchh--hHHHHhhhCCCCeeechH------------------------HHHHHHHHhcCCCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHI--WHDEVCKGCSVPFLHVSE------------------------CVAKELKEANMKPL 210 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~--~~d~l~~~~~iPii~Ive------------------------~t~~~l~~~g~k~~ 210 (332)
++.|.+ .++++|+.+..+... ..+. .+..++|+|.+.. ..++.+.+.|.+
T Consensus 58 ~~~li~~~~v~~vig~~~s~~~~~~~~~-~~~~~vP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-- 134 (312)
T cd06333 58 ARKLIEEDKVDAIIGPSTTPATMAVAPV-AEEAKTPMISLAPAAAIVEPKRKWVFKTPQNDRLMAEAILADMKKRGVK-- 134 (312)
T ss_pred HHHHHhhCCeEEEECCCCCHHHHHHHHH-HHhcCCCEEEccCCccccCCCCCcEEEcCCCcHHHHHHHHHHHHHcCCC--
Confidence 344444 589998887665432 2333 3445777776421 223455555554
Q ss_pred cCCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
||+++..+... ...-|++.+++.|++++
T Consensus 135 ------~vail~~~~~~~~~~~~~~~~~~~~~G~~v~ 165 (312)
T cd06333 135 ------TVAFIGFSDAYGESGLKELKALAPKYGIEVV 165 (312)
T ss_pred ------EEEEEecCcHHHHHHHHHHHHHHHHcCCEEE
Confidence 99999865432 23446778888898875
No 38
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=92.87 E-value=0.25 Score=48.20 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
-...+.+.++.|+++||+.|++.|-... ...+|.+.++||.|+|.
T Consensus 180 ~a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~IPtIGIG 224 (332)
T PLN02424 180 SAVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCCCCEEeec
Confidence 3445677889999999999999999866 88999999999999994
No 39
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=92.87 E-value=5 Score=39.21 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
.+.+.|+++|+=++++.... ...+.+..++|+|+.
T Consensus 73 li~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p 108 (366)
T COG0683 73 LITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISP 108 (366)
T ss_pred HHhhcCceEEEEeccCcccccchhhHhhcCceEEee
Confidence 46668999988888876654 456677778887776
No 40
>PRK09492 treR trehalose repressor; Provisional
Probab=92.78 E-value=8.5 Score=36.00 Aligned_cols=159 Identities=9% Similarity=0.027 Sum_probs=81.1
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
++.|.+.++|.+++...+. .-.+.+.+ ...|++-+ +..+++++.+.|++ ||++
T Consensus 111 ~~~l~~~~vdgiIi~~~~~-~~~~~l~~-~~~pvv~i~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I~~ 180 (315)
T PRK09492 111 LGVLKRRNVDGVILFGFTG-ITEEMLAP-WQDKLVLLARDAKGFSSVCYDDEGAIKLLMQRLYDQGHR--------HISY 180 (315)
T ss_pred HHHHHhcCCCEEEEeCCCc-ccHHHHHh-cCCCEEEEeccCCCCcEEEECcHHHHHHHHHHHHHcCCC--------eEEE
Confidence 3457778899877754321 11233332 22333322 33456777777765 9999
Q ss_pred Eech-h---h--hchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHHhcCChHH----HHHHHHHHHHHHHhCCC-CE
Q 020005 221 LAKN-A---I--LTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDALNRKDVEG----ARNLLRIALQVLLVRAV-NT 288 (332)
Q Consensus 221 LaT~-~---T--~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~ik~g~~~~----a~~~l~~~~~~L~~~ga-d~ 288 (332)
++.. . + .+..-|.+.++++|+++.. ......+. -...++.+.....+. .......+++.|.+.|. |.
T Consensus 181 i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ai~~~~D~~A~g~~~al~~~g~~di 259 (315)
T PRK09492 181 LGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLSMQS-GYELVAKVLTPETTALVCATDTLALGASKYLQEQGRDDI 259 (315)
T ss_pred EcCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCCchH-HHHHHHHHhhcCCCEEEEcCcHHHHHHHHHHHHcCCCce
Confidence 9742 1 1 2233488889999987542 11111110 111122222122111 12223344555666664 67
Q ss_pred EEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 289 VILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 289 VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
-|.|..+.++.. ...+ .+..|+ +.+.+++.++++..+.-
T Consensus 260 svig~d~~~~~~-~~~p-~lttv~~~~~~~g~~A~~~l~~~i 299 (315)
T PRK09492 260 QVAGVGNTPLLK-FLFP-NILSVDPGYAEAGRQAAQQLIDQL 299 (315)
T ss_pred EEEeeCchhHhh-hcCC-CCceecccHHHHHHHHHHHHHHHh
Confidence 788888876532 1122 123444 45678888888776643
No 41
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.68 E-value=0.27 Score=46.36 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
.+.+.+.++.++++|||.|+++|-.. ....+|.+.+++|+|+|.
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVPA-ELAKEITEALSIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEec
Confidence 35566778899999999999999974 688999999999999994
No 42
>PRK10200 putative racemase; Provisional
Probab=92.65 E-value=0.5 Score=43.69 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=61.4
Q ss_pred eEEEEechhhhc-hhhHHHHHHhc----C---CeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCE
Q 020005 217 RIGVLAKNAILT-AGFYQEKLQHE----G---FEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNT 288 (332)
Q Consensus 217 rVGlLaT~~T~~-s~lY~~~l~~~----G---i~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~ 288 (332)
+|||||--|... ..||++..+.. + ...++.+... +-+....+..++.+.....+.+.++.|.+.|||.
T Consensus 3 ~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ 78 (230)
T PRK10200 3 TIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVD----FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEG 78 (230)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC----hHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCE
Confidence 799997655544 34666554322 1 2222211110 1111234455555566788999999999999999
Q ss_pred EEECCCCcccCCCCC-CCCCCceechHHHHHHHH
Q 020005 289 VILASDDMQDLLPPD-DPLLKKCIDPMDALARST 321 (332)
Q Consensus 289 VILGCTElpli~~~~-~~~~ipvID~~~~lA~a~ 321 (332)
||++|-=....++.. +..++|+|+-.+..++++
T Consensus 79 iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~ 112 (230)
T PRK10200 79 IVLCTNTMHKVADAIESRCSLPFLHIADATGRAI 112 (230)
T ss_pred EEECCchHHHHHHHHHHhCCCCEeehHHHHHHHH
Confidence 999998777665442 234579999777555543
No 43
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=92.55 E-value=6.9 Score=35.62 Aligned_cols=162 Identities=10% Similarity=0.094 Sum_probs=83.6
Q ss_pred HHHHHHHcCCcEEEEeCCCc---hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHh--cCCCCcC
Q 020005 157 KRVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEA--NMKPLEA 212 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa---H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~--g~k~~~~ 212 (332)
.++.|.+.++|.|++..... ...++.++ ..++|++.+ ...+++++.+. |.
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~-~~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~----- 122 (275)
T cd06320 49 IAENMINKGYKGLLFSPISDVNLVPAVERAK-KKGIPVVNVNDKLIPNATAFVGTDNKANGVRGAEWIIDKLAEG----- 122 (275)
T ss_pred HHHHHHHhCCCEEEECCCChHHhHHHHHHHH-HCCCeEEEECCCCCCccceEEecCcHHHHHHHHHHHHHHhCCC-----
Confidence 34567778999877744321 12344443 346776544 33444556655 33
Q ss_pred CCCceEEEEechh-----hhchhhHHHHHHhc-CCeEEec---CccchhhchHHHHH-HHhcC-ChHH----HHHHHHHH
Q 020005 213 GSPLRIGVLAKNA-----ILTAGFYQEKLQHE-GFEVVLP---DKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIA 277 (332)
Q Consensus 213 ~~~~rVGlLaT~~-----T~~s~lY~~~l~~~-Gi~vv~P---~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~ 277 (332)
+||+++.... ..+..-|.+.++++ |++++.. +...++ -...+. .+++. +.+. .......+
T Consensus 123 ---~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~a~~~ 197 (275)
T cd06320 123 ---GKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREK--AYDVATTILQRNPDLKAIYCNNDTMALGV 197 (275)
T ss_pred ---ceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHH--HHHHHHHHHHhCCCccEEEECCchhHHHH
Confidence 3899986421 12224478889998 9886532 111111 111122 23322 2211 12233345
Q ss_pred HHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCcee-chHHHHHHHHHHHHHhhc
Q 020005 278 LQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCI-DPMDALARSTIKWVKSAE 329 (332)
Q Consensus 278 ~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvI-D~~~~lA~a~v~~a~~~~ 329 (332)
++.|.+.|. |..|.|+...|...... .+.....| =+...+++.+++...+..
T Consensus 198 ~~al~~~g~~~di~vig~d~~~~~~~~i~~~~~~~ti~~~~~~~g~~a~~~l~~~l 253 (275)
T cd06320 198 VEAVKNAGKQGKVLVVGTDGIPEAYKSIRAGELTATVDSFPALIGEVAMEVMLRAL 253 (275)
T ss_pred HHHHHhcCCCCCeEEEecCCCHHHHHHHHcCCeeEEeccCHHHHHHHHHHHHHHHh
Confidence 556666776 88899999888553211 11111223 244667777777665543
No 44
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=92.32 E-value=2.5 Score=43.26 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
.++++.......+.++.+++.|++.||.+|.+-...+...-...+++++|+.+-..+ .+..+.. +.+.+|.+=-.
T Consensus 309 ~G~~~~~~~~~~~ni~~~~~~~~~~IVt~c~~C~~~l~~~y~~~~~~v~~i~e~L~~----~~~~~~~-~~~~~v~~Hdp 383 (486)
T PRK06259 309 TGQTDVAEELKKKNLEIFNKLDVDTVVTICAGCGSTLKNDYKEKEFNVMDITEVLVE----VGLEKYK-PLDITVTYHDP 383 (486)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEECCchHHHHHHHhccccccceeeHHHHHHH----cCCccCC-CCCceEEEECc
Confidence 456677777777778889999999999999876555443222246789999877765 2222111 11224544111
Q ss_pred hhh-hchhhHH---HHHHhc-CCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCccc
Q 020005 224 NAI-LTAGFYQ---EKLQHE-GFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQD 298 (332)
Q Consensus 224 ~~T-~~s~lY~---~~l~~~-Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpl 298 (332)
=.. ...++|+ +.|++. |++++......+ --..=..+.....+.+....+.-++.+.+.|+|.||-+|.-=-.
T Consensus 384 C~~~r~~~~~~~pr~lL~~i~g~~~ve~~~~~~---CCG~gG~~~~~~~e~s~~~~~~k~~~~~~~ga~~ivt~Cp~C~~ 460 (486)
T PRK06259 384 CHLRRGQGIYEEPRKILRSIPGLEFVEMEIPDQ---CCGAGGGVRSGKPEIAEALGKRKAEMIRETGADYVITVCPFCEY 460 (486)
T ss_pred hhccccCCchhhHHHHHHhCCCceEEeCCCCCC---CcCcchhceeCCHHHHHHHHHHHHHHHHHcCCCEEEecCccHHH
Confidence 000 0123333 455543 777765322110 00000011112223344555555667778899999999953111
Q ss_pred CCCC---CCCCCCceechHHHHHHH
Q 020005 299 LLPP---DDPLLKKCIDPMDALARS 320 (332)
Q Consensus 299 i~~~---~~~~~ipvID~~~~lA~a 320 (332)
-+.. .....+++.|+++.++++
T Consensus 461 ql~~~~~~~~~~~~v~h~~ell~~~ 485 (486)
T PRK06259 461 HIRDSLKKYSEDIPVMNIVSLLDKV 485 (486)
T ss_pred HHHHHHHhcCCCCeeeeHHHHHHhh
Confidence 1111 112257899999999886
No 45
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=92.31 E-value=10 Score=35.90 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=79.9
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++.+.. .-..++.+.+..++|++-+ ...+++++.+.|.+
T Consensus 108 i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~G~~-------- 179 (341)
T PRK10703 108 LSMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIERGHR-------- 179 (341)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHHHHHHCCCC--------
Confidence 345777889987775532 2223455544245665433 22344455555543
Q ss_pred eEEEEechhhh-----chhhHHHHHHhcCCeEE----ecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAIL-----TAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T~-----~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L 281 (332)
+|++++..... +..=|.+.++++|+++. .......+. ....++. +.++ +.+. .......+++.+
T Consensus 180 ~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al 258 (341)
T PRK10703 180 DIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGDFEPES-GYEAMQQILSQKHRPTAVFCGGDIMAMGAICAA 258 (341)
T ss_pred cEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeCCCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHH
Confidence 89999643211 12336778888887642 221111111 1111222 3322 2211 122233455666
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.|. |..|.|+...+..... .+ .+..|+ +.+.+++.+++...+.
T Consensus 259 ~~~g~~ip~dv~vvgfD~~~~~~~~-~p-~lttv~~~~~~~g~~a~~~l~~~ 308 (341)
T PRK10703 259 DEMGLRVPQDISVIGYDNVRNARYF-TP-ALTTIHQPKDRLGETAFNMLLDR 308 (341)
T ss_pred HHcCCCCCCceEEEEECCCcHHhhc-CC-CCceecCCHHHHHHHHHHHHHHH
Confidence 66664 7788888777643211 11 123443 4556777777766543
No 46
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.14 E-value=0.34 Score=45.99 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
.+.+.+.++.++++||+.|++.|-.. ....+|.+.+++|+|+|.
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALSIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEec
Confidence 34466678889999999999999965 688999999999999984
No 47
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=92.14 E-value=2.9 Score=40.40 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=26.0
Q ss_pred HHHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 157 KRVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 157 ~~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
.+++|.+ -|+++|+-++++.... ...+.++.++|+|..
T Consensus 60 ~a~~li~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 60 VAQELILTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred HHHHHHhccCccEEEecCCcchhhHHHHHHHHhCCCeEEe
Confidence 3444554 4899999888876654 345666778888874
No 48
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.10 E-value=6.8 Score=35.49 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=45.7
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCcCCCCceE
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~~~~~~rV 218 (332)
.+.|.+.++|.|++........++.+.+ .++|++.+- ..+++++.+.|.+ +|
T Consensus 51 ~~~l~~~~vdgiii~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~--------~i 121 (268)
T cd06277 51 PSFLEDGKVDGIILLGGISTEYIKEIKE-LGIPFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEKGHR--------KI 121 (268)
T ss_pred HHHHHHCCCCEEEEeCCCChHHHHHHhh-cCCCEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHCCCC--------cE
Confidence 3456778999988755332333555543 367766552 2234555555544 89
Q ss_pred EEEechhhh-----chhhHHHHHHhcCCe
Q 020005 219 GVLAKNAIL-----TAGFYQEKLQHEGFE 242 (332)
Q Consensus 219 GlLaT~~T~-----~s~lY~~~l~~~Gi~ 242 (332)
++++..... +..-|.+.++++|++
T Consensus 122 ~~i~~~~~~~~~~~R~~gf~~~~~~~~~~ 150 (268)
T cd06277 122 GFVGDPLYSPSFEERYEGYKKALLDHGIP 150 (268)
T ss_pred EEECCCCCCcchHHHHHHHHHHHHHcCCC
Confidence 999765431 223377888888875
No 49
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.07 E-value=0.87 Score=43.69 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=69.9
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.|+.|-.+|-.-..+.+|.+||.....+....+++|.-.. |-+ ...+.++.++ -++
T Consensus 113 pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-----------Da~---------~~~g~deAI~----Ra~ 168 (285)
T TIGR02317 113 PKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART-----------DAR---------AVEGLDAAIE----RAK 168 (285)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc-----------Ccc---------cccCHHHHHH----HHH
Confidence 5677777776667888999999887765534667765421 111 0112333333 245
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee-echH------HHHHHHHHhcCC
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii-~Ive------~t~~~l~~~g~k 208 (332)
...++|||+|.+++-+.-..+.++.+.+++|++ +++. ...+++.+.|.+
T Consensus 169 ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~ 224 (285)
T TIGR02317 169 AYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYK 224 (285)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 677899999999998766667888888888985 5542 256778887763
No 50
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=91.95 E-value=12 Score=35.79 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=51.2
Q ss_pred HHHH-HHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFL-EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~L-e~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
+++| ++.|+++|+=+.+++... ...+.++.++|+|.. ....++.+.+.+.
T Consensus 59 ~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~------ 132 (334)
T cd06356 59 AQRLALQDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMMEKYG------ 132 (334)
T ss_pred HHHHHHhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHHccC------
Confidence 3344 456899999887776543 455666678888752 3344555555422
Q ss_pred CCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
+||+++..+... ....+++.+++.|++++.
T Consensus 133 --~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~ 165 (334)
T cd06356 133 --KKVYTIAADYNFGQISAEWVRKIVEENGGEVVG 165 (334)
T ss_pred --CeEEEECCCchhhHHHHHHHHHHHHHcCCEEEe
Confidence 379999865432 234577888888988863
No 51
>PRK09526 lacI lac repressor; Reviewed
Probab=91.91 E-value=12 Score=35.54 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=82.1
Q ss_pred HHHHHHHcCCcEEEEe-CCCchhhHHHHhh-hCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCK-GCSVPFLHV------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTaH~~~d~l~~-~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++. +.. +.....+.+ ..++|++-+ ...+++++.+.|++
T Consensus 112 ~l~~l~~~~vdGiii~~~~~-~~~~~~~~~~~~~iPvV~~d~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~-------- 182 (342)
T PRK09526 112 AVNELLAQRVSGVIINVPLE-DADAEKIVADCADVPCLFLDVSPQSPVNSVSFDPEDGTRLGVEHLVELGHQ-------- 182 (342)
T ss_pred HHHHHHhcCCCEEEEecCCC-cchHHHHHhhcCCCCEEEEeccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 3456778899998883 322 222333322 235666533 23455667776665
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeEE--ec-CccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEVV--LP-DKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv--~P-~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
+|++++.... .+..-|++.++++|+++. .. +...+. -...+. .++.+. ++. .......+++.+.
T Consensus 183 ~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 260 (342)
T PRK09526 183 RIALLAGPESSVSARLRLAGWLEYLTDYQLQPIAVREGDWSAMS--GYQQTLQMLREGPVPSAILVANDQMALGVLRALH 260 (342)
T ss_pred eEEEEeCCCccccHHHHHHHHHHHHHHcCCCcceEEeCCCchHH--HHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHH
Confidence 9999964321 122337888998898642 21 211111 011122 233322 221 1223334556666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.|. |.-|+|....+..... .+ .+..|+ +.+.+++.+++.....
T Consensus 261 ~~g~~vP~disvig~d~~~~~~~~-~p-~lttv~~~~~~~g~~A~~~L~~~ 309 (342)
T PRK09526 261 ESGLRVPGQISVIGYDDTEDSSYF-IP-PLTTIKQDFRLLGKEAVDRLLAL 309 (342)
T ss_pred HcCCCCCCceEEEeeCCCchhccc-CC-CceEecCCHHHHHHHHHHHHHHH
Confidence 6664 7778888776643211 11 123343 4666777777776554
No 52
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=91.74 E-value=13 Score=36.52 Aligned_cols=79 Identities=13% Similarity=0.017 Sum_probs=48.2
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le-~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
+++|. +.|+++|+=+.++.... ...+.++.++|++.. ....++.+.+...
T Consensus 60 a~~li~~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g------ 133 (374)
T TIGR03669 60 TRRLLNRDKVDALWAGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEYG------ 133 (374)
T ss_pred HHHHHHhCCCCEEEcCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcCC------
Confidence 34444 56899887776665443 344555667777642 1233445554321
Q ss_pred CCceEEEEechhhhc---hhhHHHHHHhcCCeEE
Q 020005 214 SPLRIGVLAKNAILT---AGFYQEKLQHEGFEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv 244 (332)
+||++++.+...- ...+++.+++.|.+++
T Consensus 134 --~~va~l~~d~~~g~~~~~~~~~~~~~~G~~vv 165 (374)
T TIGR03669 134 --KKIYTIAADYNFGQLSADWVRVIAKENGAEVV 165 (374)
T ss_pred --CeEEEEcCCcHHHHHHHHHHHHHHHHcCCeEE
Confidence 3899998865432 3457788888898876
No 53
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.23 E-value=11 Score=33.95 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=81.4
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
.++.|.+.++|.|++........... ....++|++-+ +..+++++.+.|.+ +
T Consensus 48 ~~~~l~~~~~dgiii~~~~~~~~~~~-~~~~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~~--------~ 118 (269)
T cd06288 48 AVEALLDHRVDGIIYATMYHREVTLP-PELLSVPTVLLNCYDADGALPSVVPDEEQGGYDATRHLLAAGHR--------R 118 (269)
T ss_pred HHHHHHHcCCCEEEEecCCCChhHHH-HHhcCCCEEEEecccCCCCCCeEEEccHHHHHHHHHHHHHcCCc--------e
Confidence 34557788999888765332222111 12235665432 34455556665544 8
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
|++++.... .+..-|.+.++++|+++ +.......+. ....+.. +.++. .+. .......+++.|.
T Consensus 119 i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~ 197 (269)
T cd06288 119 IAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADD-GYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALL 197 (269)
T ss_pred EEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHH-HHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 999975432 12233677888887542 1111111111 1111222 33322 111 1222234445565
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceechH-HHHHHHHHHHHHhhcc
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCIDPM-DALARSTIKWVKSAEK 330 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID~~-~~lA~a~v~~a~~~~~ 330 (332)
+.| -|..|.|....+...+...+ .+..|+.. +.+++.+++......+
T Consensus 198 ~~g~~vp~di~v~g~d~~~~~~~~~~~-~~~ti~~~~~~~g~~a~~~l~~~~~ 249 (269)
T cd06288 198 ERGLRIPQDVSVVGFDNQEIIAEHLRP-PLTTVALPHYEMGRWAVELLLDGIE 249 (269)
T ss_pred HcCCCCcccceEEeeCCchhhhhccCC-CceeEecCHHHHHHHHHHHHHHHhc
Confidence 555 37788888877755422222 23555543 6777777777665533
No 54
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=91.19 E-value=11 Score=33.91 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=77.4
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.+.+.++|.+++. ++.....++.+++ .++|++-+ ...+++++.+.|.+ +
T Consensus 48 i~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~ 118 (268)
T cd06298 48 LNNLLAKQVDGIIFMGGKISEEHREEFKR-SPTPVVLAGSVDEDNELPSVNIDYKKAAFEATELLIKNGHK--------K 118 (268)
T ss_pred HHHHHHhcCCEEEEeCCCCcHHHHHHHhc-CCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHcCCc--------e
Confidence 345667899988874 5444455566644 35665543 23345556665543 8
Q ss_pred EEEEechhh------hchhhHHHHHHhcCCeE----E-ecCccchhhchHHHHHH-HhcCChHH----HHHHHHHHHHHH
Q 020005 218 IGVLAKNAI------LTAGFYQEKLQHEGFEV----V-LPDKATMEHTLIPALDA-LNRKDVEG----ARNLLRIALQVL 281 (332)
Q Consensus 218 VGlLaT~~T------~~s~lY~~~l~~~Gi~v----v-~P~~~~q~~~l~~~i~~-ik~g~~~~----a~~~l~~~~~~L 281 (332)
|++++.... .+..-|++.++++|+++ + ..+.+ .+. -...+.. +..+..+. .......+++.+
T Consensus 119 i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ai~~~~d~~a~~~~~~l 196 (268)
T cd06298 119 IAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYT-YES-GYELAEELLEDGKPTAAFVTDDELAIGILNAA 196 (268)
T ss_pred EEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCC-hhH-HHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Confidence 999974322 11233678888888653 2 22221 110 1111222 22222211 122234455666
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.|. |.-|.|....+...- ..+ .+..|. +.+.+++.+++...+.
T Consensus 197 ~~~g~~vp~di~vvg~d~~~~~~~-~~~-~lttv~~~~~~~g~~a~~~l~~~ 246 (268)
T cd06298 197 QDAGLKVPEDFEIIGFNNTKLASM-VRP-QLTSVTQPLYDIGAVAMRLLTKL 246 (268)
T ss_pred HHcCCCCccceEEEeeccHHHHhh-cCC-CcceEcCCHHHHHHHHHHHHHHH
Confidence 66664 556666665553211 111 123332 4455666666665543
No 55
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=90.92 E-value=14 Score=35.99 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=41.6
Q ss_pred ceEEEEechhhhc---hhhHHHHHHhcCCeEEe----cCccchhhchHHHHHHHhcCChHH-----HHHHHHHHHHHHHh
Q 020005 216 LRIGVLAKNAILT---AGFYQEKLQHEGFEVVL----PDKATMEHTLIPALDALNRKDVEG-----ARNLLRIALQVLLV 283 (332)
Q Consensus 216 ~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~~ik~g~~~~-----a~~~l~~~~~~L~~ 283 (332)
++|+++..+...- ...+++.+++.|.+++. |.. .++ +...+..+++...+. ....+..+++.+.+
T Consensus 162 k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g-~~D--~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~~~~ 238 (369)
T PRK15404 162 KRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAG-DKD--FSALIAKLKKENVDFVYYGGYHPEMGQILRQARE 238 (369)
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeCCC-CCc--hHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHH
Confidence 4899998864322 23467778888988863 221 122 333345555432211 11223445566667
Q ss_pred CCCCEEEECCC
Q 020005 284 RAVNTVILASD 294 (332)
Q Consensus 284 ~gad~VILGCT 294 (332)
.|.+.-++++.
T Consensus 239 ~G~~~~~i~~~ 249 (369)
T PRK15404 239 AGLKTQFMGPE 249 (369)
T ss_pred CCCCCeEEecC
Confidence 77776677774
No 56
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=90.60 E-value=15 Score=34.61 Aligned_cols=160 Identities=8% Similarity=0.028 Sum_probs=80.6
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.+.+.++|.|++. +......++.+. ..++|++.+. ..+++++.+.|++ +
T Consensus 112 ~~~~~~~~vdgiI~~~~~~~~~~~~~l~-~~~iPvV~~~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Gh~--------~ 182 (331)
T PRK14987 112 LESMLSWNIDGLILTERTHTPRTLKMIE-VAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHR--------H 182 (331)
T ss_pred HHHHHhcCCCEEEEcCCCCCHHHHHHHH-hCCCCEEEEecCCCCCCCceEEeCcHHHHHHHHHHHHHCCCc--------e
Confidence 345677899988874 322223344443 3467776441 2455667776665 9
Q ss_pred EEEEechhhh----chhhHHHHHHhcCCe---EEecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHHhC
Q 020005 218 IGVLAKNAIL----TAGFYQEKLQHEGFE---VVLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLLVR 284 (332)
Q Consensus 218 VGlLaT~~T~----~s~lY~~~l~~~Gi~---vv~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~~~ 284 (332)
|++++.+... +..=|++.++++|+. ++.......+. -...++. ++... .+. .......+++.+.+.
T Consensus 183 I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~ 261 (331)
T PRK14987 183 IAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSS-GIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRL 261 (331)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHHHcCCCccceeecCCCChhh-HHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 9999754321 122377888888863 22111111110 1111222 22221 111 112223344556666
Q ss_pred CC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 285 AV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 285 ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
|. |.-|.|+...++.. ...+. +..|+ +.+.+++.+++...+..
T Consensus 262 g~~vP~disvigfD~~~~~~-~~~p~-lttv~~~~~~~g~~A~~~l~~~i 309 (331)
T PRK14987 262 GLKVPDDMAIAGFHGHDIGQ-VMEPR-LASVLTPRERMGSIGAERLLARI 309 (331)
T ss_pred CCCCCCccEEEeeCCchhhh-ccCCC-CceEeCCHHHHHHHHHHHHHHHh
Confidence 63 78888888765332 11221 23333 45667777777766543
No 57
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=90.60 E-value=12 Score=33.52 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=81.0
Q ss_pred HHHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCee-------------e-----chHHHHHHHHHhcCCCCcCCCCce
Q 020005 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFL-------------H-----VSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii-------------~-----Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
.++.+.+.++|.|++. |+.....++.+++.. |++ + ....+++++.+.|.+ +
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~--pvv~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~ 116 (260)
T cd06286 47 YLELLKTKQVDGLILCSRENDWEVIEPYTKYG--PIVLCEEYDSKNISSVYIDHYEAFYEALKYLIQKGYR--------K 116 (260)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHhcCC--CEEEEecccCCCCCEEEECChHHHHHHHHHHHHCCCc--------e
Confidence 3456778899987774 543334455555532 444 2 133455667776654 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHHH-hcC-ChHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDAL-NRK-DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~i-k~g-~~~~----a~~~l~~~~~~L~ 282 (332)
|++++.... .+..=|.+.++++|+++ +.......+. ....++.+ +.+ +.+. .......+++.+.
T Consensus 117 i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~ 195 (260)
T cd06286 117 IAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIED-GERIGHQLLKMKDRPDAIFTGSDEVAAGIITEAK 195 (260)
T ss_pred EEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCCCHHH-HHHHHHHHHcCCCCCCEEEEcchHHHHHHHHHHH
Confidence 999975432 12233777888888643 2211111110 11112332 222 1111 1223344555666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.|. |.-|.|....+.. . .+ .+..|+ +.+.+++.+++...+.
T Consensus 196 ~~g~~ip~di~v~g~d~~~~~-~--~~-~~ttv~~~~~~~g~~a~~~l~~~ 242 (260)
T cd06286 196 KQGIRVPEDLAIIGFDNQPIS-E--LL-GITTIDQPVKELGEKAFELLLNQ 242 (260)
T ss_pred HcCCCCCcceEEEeecCcccc-c--CC-CCcccCCCHHHHHHHHHHHHHHH
Confidence 6554 7788888777655 1 11 123333 4567788877776554
No 58
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.56 E-value=1.4 Score=42.47 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=67.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.|+.|-++|-.-....++.+||.....+.+..+++|.-..+. +. ..+.++.++ -++
T Consensus 117 pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa-----------~~---------~~g~deaI~----Ra~ 172 (294)
T TIGR02319 117 PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA-----------RE---------SFGLDEAIR----RSR 172 (294)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc-----------cc---------cCCHHHHHH----HHH
Confidence 577777777666678899999988876653467777552221 10 112333333 245
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCe-eechHH------HHHHHHHhcC
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF-LHVSEC------VAKELKEANM 207 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPi-i~Ive~------t~~~l~~~g~ 207 (332)
...++|||+|.+++-+.-..+..+.+.++.|+ .||+.. ..+++.+.|.
T Consensus 173 aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~ 227 (294)
T TIGR02319 173 EYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGY 227 (294)
T ss_pred HHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCC
Confidence 57789999999998665555777777888885 355532 4566777666
No 59
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=90.41 E-value=4 Score=38.75 Aligned_cols=81 Identities=12% Similarity=-0.058 Sum_probs=50.3
Q ss_pred HHHHHHHc-CCcEEEEeCCCchhh-HHHHhhhCCCCeeech----------------------HHHHHHHHHhcCCCCcC
Q 020005 157 KRVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS----------------------ECVAKELKEANMKPLEA 212 (332)
Q Consensus 157 ~~~~Le~~-Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv----------------------e~t~~~l~~~g~k~~~~ 212 (332)
.+++|.+. |+++|+=+.++.... ...+.+..++|+|+.. ...++.+.+.+.
T Consensus 58 ~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----- 132 (333)
T cd06331 58 AARRLIRDDKVDAVFGCYTSASRKAVLPVVERGRGLLFYPTQYEGGECSPNVFYTGATPNQQLLPLIPYLMEKYG----- 132 (333)
T ss_pred HHHHHHhccCCcEEEecccHHHHHHHHHHHHhcCceEEeCCCCCCCcCCCCeEEccCChHHhHHHHHHHHHHhcC-----
Confidence 44556655 888888776665433 4445556678877521 124444554433
Q ss_pred CCCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 213 GSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 213 ~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
+||++|..+... -...+++.+++.|.+++.
T Consensus 133 ---~~v~il~~d~~~g~~~~~~~~~~~~~~G~~vv~ 165 (333)
T cd06331 133 ---KRFYLIGSDYVWPRESNRIARALLEELGGEVVG 165 (333)
T ss_pred ---CeEEEECCCchhHHHHHHHHHHHHHHcCCEEEE
Confidence 389999876542 235677888888988753
No 60
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=90.28 E-value=7 Score=35.22 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=68.0
Q ss_pred HHHHHHc-CCcEEEEeCCCchh-hHHHHhhhCCCCeeech--------------------------HHHHHHHHHhcCCC
Q 020005 158 RVFLEKA-GARCIVMPCHLSHI-WHDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMKP 209 (332)
Q Consensus 158 ~~~Le~~-Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Iv--------------------------e~t~~~l~~~g~k~ 209 (332)
++.|.+. |+++|+.+..+... .+.++.+..++|+|.+. ...++.+++.+.
T Consensus 59 ~~~l~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 136 (299)
T cd04509 59 ARRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNW-- 136 (299)
T ss_pred HHHHhcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCC--
Confidence 3445555 89998887654222 23444555677776642 223344554444
Q ss_pred CcCCCCceEEEEechhh---hchhhHHHHHHhcCCeEEecCc-cchhhchHHHHHHHhcCChH----H-HHHHHHHHHHH
Q 020005 210 LEAGSPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVVLPDK-ATMEHTLIPALDALNRKDVE----G-ARNLLRIALQV 280 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv~P~~-~~q~~~l~~~i~~ik~g~~~----~-a~~~l~~~~~~ 280 (332)
++|++++.+.. .....|++.+++.|++++.... ......+...+..++....+ - .......+++.
T Consensus 137 ------~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 210 (299)
T cd04509 137 ------KKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQ 210 (299)
T ss_pred ------cEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHH
Confidence 38999987554 1234577788888887653110 00001122334444432111 0 11334445556
Q ss_pred HHhCCC--CEEEECCCCc
Q 020005 281 LLVRAV--NTVILASDDM 296 (332)
Q Consensus 281 L~~~ga--d~VILGCTEl 296 (332)
+.+.|. +..+++++-.
T Consensus 211 ~~~~g~~~~~~~i~~~~~ 228 (299)
T cd04509 211 AAEAGLTGGYPILGITLG 228 (299)
T ss_pred HHHcCCCCCCcEEecccc
Confidence 666666 6667766544
No 61
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.27 E-value=13 Score=33.31 Aligned_cols=160 Identities=12% Similarity=0.108 Sum_probs=78.2
Q ss_pred HHHHHHHcCCcEEEEe-CCCc-hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVMP-CHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTa-H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.+.+.++|.+++. |+.. ...++.+. ..++|++-+ ...+++.+.+.|.+
T Consensus 47 ~i~~~~~~~vdgiii~~~~~~~~~~~~~~~-~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~------- 118 (268)
T cd06289 47 LLSTMLEHGVAGIILCPAAGTSPDLLKRLA-ESGIPVVLVAREVAGAPFDYVGPDNAAGARLATEHLISLGHR------- 118 (268)
T ss_pred HHHHHHHcCCCEEEEeCCCCccHHHHHHHH-hcCCCEEEEeccCCCCCCCEEeecchHHHHHHHHHHHHCCCC-------
Confidence 3455778899987664 4432 23344443 346776643 23344555555543
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCe----EEecCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFE----VVLPDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~----vv~P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~~ 280 (332)
+|++++.... .+..-|.+.++++|++ .+.+.....+. ....+. .++.+ +++. .......+++.
T Consensus 119 -~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~a 196 (268)
T cd06289 119 -RIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQG-GAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSG 196 (268)
T ss_pred -CEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCcchhh-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHH
Confidence 8999975322 2233466778877743 22332211111 111122 23332 2211 11222334455
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.| -|..|+|+-..+...... + .+..|+ +...+++.+++.+...
T Consensus 197 l~~~g~~~p~di~iig~d~~~~~~~~~-~-~l~ti~~~~~~~g~~a~~~l~~~ 247 (268)
T cd06289 197 LRRAGLTPGRDIAVVGFDDVAEAALAT-P-ALTTVSTDPREIGRRAAELLLRR 247 (268)
T ss_pred HHHcCCCCCcceEEEeecCchHHHhcC-C-CceeeeCCHHHHHHHHHHHHHHH
Confidence 55544 377888887776432211 1 122333 4556777777666554
No 62
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=89.61 E-value=3.9 Score=35.94 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=71.8
Q ss_pred HHHHHHH-HHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHH---HHHHHhcCCCCcCCCCceEEEEechhhhc-h
Q 020005 155 RRKRVFL-EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA---KELKEANMKPLEAGSPLRIGVLAKNAILT-A 229 (332)
Q Consensus 155 ~~~~~~L-e~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~---~~l~~~g~k~~~~~~~~rVGlLaT~~T~~-s 229 (332)
.+.++.+ ++.|+|+|+---.| .+.|++.+++||+.|--... +.+.+.. ..+.+||+++-...+. .
T Consensus 23 v~~a~~~~~~~g~dViIsRG~t----a~~lr~~~~iPVV~I~~s~~Dil~al~~a~------~~~~~Iavv~~~~~~~~~ 92 (176)
T PF06506_consen 23 VEEARQLLESEGADVIISRGGT----AELLRKHVSIPVVEIPISGFDILRALAKAK------KYGPKIAVVGYPNIIPGL 92 (176)
T ss_dssp HHHHHHHHTTTT-SEEEEEHHH----HHHHHCC-SS-EEEE---HHHHHHHHHHCC------CCTSEEEEEEESS-SCCH
T ss_pred HHHHHHhhHhcCCeEEEECCHH----HHHHHHhCCCCEEEECCCHhHHHHHHHHHH------hcCCcEEEEecccccHHH
Confidence 3445667 88999998865554 46778888999999843333 2333322 1235999999987764 3
Q ss_pred hhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCc
Q 020005 230 GFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDPLLKK 309 (332)
Q Consensus 230 ~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~~~ip 309 (332)
..+.+.| |+++..-.-. + .+.+...++++.+.|+|+||=|-+=..+ ... ...+.-
T Consensus 93 ~~~~~ll---~~~i~~~~~~----------------~----~~e~~~~i~~~~~~G~~viVGg~~~~~~-A~~-~gl~~v 147 (176)
T PF06506_consen 93 ESIEELL---GVDIKIYPYD----------------S----EEEIEAAIKQAKAEGVDVIVGGGVVCRL-ARK-LGLPGV 147 (176)
T ss_dssp HHHHHHH---T-EEEEEEES----------------S----HHHHHHHHHHHHHTT--EEEESHHHHHH-HHH-TTSEEE
T ss_pred HHHHHHh---CCceEEEEEC----------------C----HHHHHHHHHHHHHcCCcEEECCHHHHHH-HHH-cCCcEE
Confidence 4444544 6655331000 0 1124455667788999876655432222 211 122224
Q ss_pred eechHHHHHHHHHHHHHhh
Q 020005 310 CIDPMDALARSTIKWVKSA 328 (332)
Q Consensus 310 vID~~~~lA~a~v~~a~~~ 328 (332)
+|++...-++.+++.|...
T Consensus 148 ~i~sg~esi~~Al~eA~~i 166 (176)
T PF06506_consen 148 LIESGEESIRRALEEALRI 166 (176)
T ss_dssp ESS--HHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHH
Confidence 5677676677777766543
No 63
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=89.59 E-value=9.2 Score=34.42 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=68.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeec-------------------------hHHHHHHHHHhcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV-------------------------SECVAKELKEANMKPL 210 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I-------------------------ve~t~~~l~~~g~k~~ 210 (332)
.++.|.+.|+++|+.+..+... ..-++.+..++|+|.. .+..++.+++.+
T Consensus 58 ~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 133 (298)
T cd06268 58 AARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKG---- 133 (298)
T ss_pred HHHHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhc----
Confidence 3445666699999887655332 2233444456776654 123344555544
Q ss_pred cCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEecCcc-chhhchHHHHHHHhcCChH-----HHHHHHHHHHHHH
Q 020005 211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVLPDKA-TMEHTLIPALDALNRKDVE-----GARNLLRIALQVL 281 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~P~~~-~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~~~L 281 (332)
+.++|++++.+... ....|++.++++|++++....- .........+..++....+ ........+++.+
T Consensus 134 ---~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 210 (298)
T cd06268 134 ---KVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQA 210 (298)
T ss_pred ---CCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccchHHHHHHHH
Confidence 12389999876532 2344667788888876532110 0001122233444432211 0112344455566
Q ss_pred HhCCCCEEEECCCCcc
Q 020005 282 LVRAVNTVILASDDMQ 297 (332)
Q Consensus 282 ~~~gad~VILGCTElp 297 (332)
.+.|.+.-|+++....
T Consensus 211 ~~~g~~~~~~~~~~~~ 226 (298)
T cd06268 211 REAGLKVPIVGGDGAA 226 (298)
T ss_pred HHcCCCCcEEecCccC
Confidence 6677676777665443
No 64
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=89.52 E-value=16 Score=33.02 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=80.9
Q ss_pred HHHHHHHcCCcEEEE-eCCCc--hhhHHHHhhhCCCCeeechH--------------------HHHHHHHHh--cCCCCc
Q 020005 157 KRVFLEKAGARCIVM-PCHLS--HIWHDEVCKGCSVPFLHVSE--------------------CVAKELKEA--NMKPLE 211 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI-~CNTa--H~~~d~l~~~~~iPii~Ive--------------------~t~~~l~~~--g~k~~~ 211 (332)
.++.+.+.++|.+++ ++++. ...++++++ .++|++.+-. .+++.+.+. |.
T Consensus 47 ~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~---- 121 (267)
T cd06322 47 DVEDFITKKVDAIVLSPVDSKGIRAAIAKAKK-AGIPVITVDIAAEGVAVVSHVATDNYAGGVLAGELAAKVLNGK---- 121 (267)
T ss_pred HHHHHHHcCCCEEEEcCCChhhhHHHHHHHHH-CCCCEEEEcccCCCCceEEEEecChHHHHHHHHHHHHHHhCCC----
Confidence 344567789998877 55542 123455443 4677665521 234455554 33
Q ss_pred CCCCceEEEEechhh----hchhhHHHHHHhc-CCeEEe-cCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHH
Q 020005 212 AGSPLRIGVLAKNAI----LTAGFYQEKLQHE-GFEVVL-PDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQ 279 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T----~~s~lY~~~l~~~-Gi~vv~-P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~ 279 (332)
++|++++.+.. .+..-|++.++++ |++++. +.....+. ....+. .+.+. +.+. .......+++
T Consensus 122 ----~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~ 196 (267)
T cd06322 122 ----GQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAVQPGITRAE-ALTAAQNILQANPDLDGIFAFGDDAALGAVS 196 (267)
T ss_pred ----ceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEecCCCChHH-HHHHHHHHHHhCCCCCEEEEcCCcHHHHHHH
Confidence 38999974322 1234477888888 887642 21111111 111122 23222 1211 1233445566
Q ss_pred HHHhCCC-CEEEECCCCcccCCCCC--CCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 280 VLLVRAV-NTVILASDDMQDLLPPD--DPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 280 ~L~~~ga-d~VILGCTElpli~~~~--~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.|.+.|. |..|.|....+...... +......|+ ....+++.+++.....
T Consensus 197 al~~~g~~di~vvg~d~~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~~~ 249 (267)
T cd06322 197 AIKAAGRDNVKVIGFDGMPEARKAVDGEPPFVAVIRQYPDQMGKKAIDAAADV 249 (267)
T ss_pred HHHHCCCCCeEEEEecCCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHHHH
Confidence 6777775 77777776665432111 111122232 3455666666666554
No 65
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=89.44 E-value=6.1 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=19.3
Q ss_pred ceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+||++++.+...- ...|++.+++.|.+++.
T Consensus 139 ~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~ 171 (347)
T cd06336 139 KKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVS 171 (347)
T ss_pred ceEEEEccCCchhHHHHHHHHHHHHHcCCEEee
Confidence 4888888765432 23356677777877753
No 66
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=89.31 E-value=5.2 Score=38.18 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=46.5
Q ss_pred HHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCCCcCC
Q 020005 161 LEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
+++.|+++|+=|..+... ....+.+..++|+|+. ..+.++.+++.+.+
T Consensus 62 ~~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~----- 136 (350)
T cd06366 62 LENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWR----- 136 (350)
T ss_pred hccCCceEEECCCcHHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCc-----
Confidence 334488888877655443 2445666667777752 12344444444443
Q ss_pred CCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
||+++..+... ....+++.+++.|++++.
T Consensus 137 ---~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~ 168 (350)
T cd06366 137 ---RVATIYEDDDYGSGGLPDLVDALQEAGIEISY 168 (350)
T ss_pred ---EEEEEEEcCcccchhHHHHHHHHHHcCCEEEE
Confidence 89999865542 234567778888988764
No 67
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=89.26 E-value=19 Score=33.77 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=103.0
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.++||++= |.-+-.||..+.+..... ....+++.+.. .+.+.. .+
T Consensus 59 ~~~Igvv~---~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~-------------------------~~~~~~----~~ 106 (329)
T TIGR01481 59 TTTVGVII---PDISNIYYAELARGIEDIATMYKYNIILSNSD-------------------------EDPEKE----VQ 106 (329)
T ss_pred CCEEEEEe---CCCCchhHHHHHHHHHHHHHHcCCEEEEEeCC-------------------------CCHHHH----HH
Confidence 46888883 222346888877766532 34555554410 111111 12
Q ss_pred HHHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++. +......++.+++ .++|++-+ +..+++++.+.|++
T Consensus 107 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 177 (329)
T TIGR01481 107 VLNTLLSKQVDGIIFMGGTITEKLREEFSR-SPVPVVLAGTVDKENELPSVNIDYKQATKEAVGELIAKGHK-------- 177 (329)
T ss_pred HHHHHHhCCCCEEEEeCCCCChHHHHHHHh-cCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 2345677889987773 3322333444443 36676543 23355667776665
Q ss_pred eEEEEechhh------hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHHHhcCChHH----HHHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI------LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDALNRKDVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 217 rVGlLaT~~T------~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~ik~g~~~~----a~~~l~~~~~~L~ 282 (332)
+|++++.+.. .+..-|.+.++++|+++ +.......+. -...++.+.....+. .......+++.|.
T Consensus 178 ~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~ 256 (329)
T TIGR01481 178 SIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDA-GYKAFAELKGSLPTAVFVASDEMAAGILNAAM 256 (329)
T ss_pred eEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHH-HHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHH
Confidence 9999964221 12233778888888753 2211111110 111122222111111 1222334555666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.|. |.-|.|.-..++.. ...+ .+..|+ +...+++.+++.....
T Consensus 257 ~~g~~vP~dvsvvgfd~~~~~~-~~~p-~lttv~~~~~~~g~~Av~~L~~~ 305 (329)
T TIGR01481 257 DAGIKVPEDLEVITSNNTRLTE-MVRP-QLSTIIQPLYDIGAVAMRLLTKY 305 (329)
T ss_pred HcCCCCCCceEEEeeCCchHHh-hcCC-CCcEEecCHHHHHHHHHHHHHHH
Confidence 6663 77888888777432 1122 123444 4566777777766554
No 68
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=89.25 E-value=5.6 Score=37.77 Aligned_cols=79 Identities=14% Similarity=0.016 Sum_probs=46.5
Q ss_pred HHHHHHc-CCcEEEEeCCCchhhHHHHhhhCCCCeeec-----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKA-GARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~-Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
+++|.+. ++++|+.++-+.....-++-+..++|+|.. ++..++.+.+.+.+
T Consensus 59 ~~~li~~~~V~~iig~~~s~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----- 133 (341)
T cd06341 59 ARDLVEDDKVVAVVGGSSGAGGSALPYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGDFAKDQGGT----- 133 (341)
T ss_pred HHHHHHhcCceEEEecccccchhHHHHHhhcCCceecCCCCCchhhcCCCeEEecCCCcchhHHHHHHHHHcCCc-----
Confidence 4455555 899998887654443213334456665533 23444556555443
Q ss_pred CCceEEEEechhh----hchhhHHHHHHhcCCeEE
Q 020005 214 SPLRIGVLAKNAI----LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~vv 244 (332)
|++++.+... -...-|++.+++.|++++
T Consensus 134 ---~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~ 165 (341)
T cd06341 134 ---RAVALVTALSAAVSAAAALLARSLAAAGVSVA 165 (341)
T ss_pred ---EEEEEEeCCcHHHHHHHHHHHHHHHHcCCccc
Confidence 8998876443 123346778888888764
No 69
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=89.22 E-value=0.97 Score=42.20 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
+++.+.+ .++.+...++|+|+|+|.-.+.+ ++++++.+++|||+.-.+++=++.+.
T Consensus 166 ~p~~i~~----~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~ 223 (239)
T TIGR02990 166 SPDCIVE----AALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRL 223 (239)
T ss_pred CHHHHHH----HHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
Confidence 4445444 34456678999999999999986 89999999999999999988665553
No 70
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=89.09 E-value=6.9 Score=36.83 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=46.2
Q ss_pred HHHHH-HHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeech--------------------------HHHHHHHHHhcCC
Q 020005 157 KRVFL-EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMK 208 (332)
Q Consensus 157 ~~~~L-e~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv--------------------------e~t~~~l~~~g~k 208 (332)
.+++| .+.+++.|+.++.+.... .-.+-+..++|+|... ...++.+.+.+.+
T Consensus 56 ~~~~lv~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~ 135 (336)
T cd06360 56 KARKLIEQDKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYK 135 (336)
T ss_pred HHHHHHHHhCCcEEEccCccHhHHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCC
Confidence 33445 346899988887654322 2223334467776542 2234445554443
Q ss_pred CCcCCCCceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 209 PLEAGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+|+++..+.... ..-|++.+++.|++++.
T Consensus 136 --------~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~ 167 (336)
T cd06360 136 --------KVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVK 167 (336)
T ss_pred --------eEEEEeccchhhHHHHHHHHHHHHHcCCEEEE
Confidence 899987644321 23467788888888753
No 71
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=88.98 E-value=17 Score=32.87 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=45.7
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeech-------------------HHHHHHHHHh--cCCCCcC
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS-------------------ECVAKELKEA--NMKPLEA 212 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~--g~k~~~~ 212 (332)
.++.+...++|.|++.....+ ..++.+++ .++|++-+- ..+++++.+. |.
T Consensus 52 ~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~----- 125 (272)
T cd06300 52 DIRNLIAQGVDAIIINPASPTALNPVIEEACE-AGIPVVSFDGTVTTPCAYNVNEDQAEFGKQGAEWLVKELGGK----- 125 (272)
T ss_pred HHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEEecCCCCCceeEecCCHHHHHHHHHHHHHHHcCCC-----
Confidence 334566779999888654322 23455443 467766532 2344555554 33
Q ss_pred CCCceEEEEechh-----hhchhhHHHHHHhcC-CeEE
Q 020005 213 GSPLRIGVLAKNA-----ILTAGFYQEKLQHEG-FEVV 244 (332)
Q Consensus 213 ~~~~rVGlLaT~~-----T~~s~lY~~~l~~~G-i~vv 244 (332)
++|++++... ..+..-|++.++++| +++.
T Consensus 126 ---~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~ 160 (272)
T cd06300 126 ---GNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIV 160 (272)
T ss_pred ---ceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEE
Confidence 3899996421 122334788888887 8754
No 72
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=88.56 E-value=1.6 Score=40.38 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhH-HHHhhhCCCCeeechHHHHHHHHH
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKELKE 204 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~-d~l~~~~~iPii~Ive~t~~~l~~ 204 (332)
+.++++.|.++|||+|++=|-..|... +.+++.+++|+|---..+++.+.+
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~~~E 218 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARLAAE 218 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHHHHH
Confidence 456778899999999999999999884 778888999999876666555544
No 73
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=88.54 E-value=18 Score=34.70 Aligned_cols=80 Identities=23% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGS 214 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~~ 214 (332)
+++|.+.++++|+=|..+.... ...+.+..++|+|.. +..+++++.+.|.+
T Consensus 52 ~~~li~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~k------ 125 (336)
T cd06339 52 ARQAVAEGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYARSQGKR------ 125 (336)
T ss_pred HHHHHHcCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHHhcCcc------
Confidence 3445555777666554443322 223344456666643 12344455555544
Q ss_pred CceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 215 PLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 215 ~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
||++++.+... ....|++.+++.|.+++.
T Consensus 126 --~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~ 157 (336)
T cd06339 126 --RPLVLAPDGAYGQRVADAFRQAWQQLGGTVVA 157 (336)
T ss_pred --ceEEEecCChHHHHHHHHHHHHHHHcCCceee
Confidence 89999754432 233466778888888764
No 74
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=88.37 E-value=18 Score=32.36 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=76.8
Q ss_pred HHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 161 LEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 161 Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
+.+.++|.|++. ++.....+..+.+ .++|++-+ +..+++++.+.|.+ +|++
T Consensus 55 ~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~--------~i~~ 125 (268)
T cd06271 55 VESGLVDGVIISRTRPDDPRVALLLE-RGFPFVTHGRTELGDPHPWVDFDNEAAAYQAVRRLIALGHR--------RIAL 125 (268)
T ss_pred HHcCCCCEEEEecCCCCChHHHHHHh-cCCCEEEECCcCCCCCCCeEeeCcHHHHHHHHHHHHHcCCC--------cEEE
Confidence 445678987774 4333333444432 35565443 23455566666554 8999
Q ss_pred Eechhhh-----chhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHHhCC
Q 020005 221 LAKNAIL-----TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLLVRA 285 (332)
Q Consensus 221 LaT~~T~-----~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~~~g 285 (332)
++..... +..-|++.++++|++. +.......+. ..+.++. ++.+. .+. .......+++.+.+.|
T Consensus 126 i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g 204 (268)
T cd06271 126 LNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEG-GYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAG 204 (268)
T ss_pred ecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCChHH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 9754321 2233677888887652 2222211111 1111222 33322 211 1222334555565555
Q ss_pred C----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 286 V----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 286 a----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
. |.-|.|+...+...-. .+ .+..|+ +...+++.+++.....
T Consensus 205 ~~vp~~i~iig~d~~~~~~~~-~~-~ltti~~~~~~~g~~a~~~l~~~ 250 (268)
T cd06271 205 LRPGRDVSVVGFDDSPPLLFF-SP-PLTTVRSDLRAAGRRLAELLLAR 250 (268)
T ss_pred CCCCcceeEEEecCchHHhhc-CC-CceEEccCHHHHHHHHHHHHHHH
Confidence 3 6778888887754411 12 234555 3455666666655443
No 75
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=88.35 E-value=13 Score=35.50 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=40.9
Q ss_pred ceEEEEechhhhc---hhhHHHHHHh--cCCeEEe----cCccchhhchHHHHHHHhcCChH-----HHHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAILT---AGFYQEKLQH--EGFEVVL----PDKATMEHTLIPALDALNRKDVE-----GARNLLRIALQVL 281 (332)
Q Consensus 216 ~rVGlLaT~~T~~---s~lY~~~l~~--~Gi~vv~----P~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~~~L 281 (332)
+||+++..+...- ...+++.+++ .|++++. |..... .+.+.+..+++...+ ..-.....+++.+
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~--d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~ 221 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVK--DFSPYVAKIKASGADTVITGNWGNDLLLLVKQA 221 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCC--chHHHHHHHHHcCCCEEEEcccCchHHHHHHHH
Confidence 4999998654321 2345678888 8888863 211101 133334555543321 0011233455667
Q ss_pred HhCCCCEEEECCC
Q 020005 282 LVRAVNTVILASD 294 (332)
Q Consensus 282 ~~~gad~VILGCT 294 (332)
.+.|.+.-+++++
T Consensus 222 ~~~g~~~~~~~~~ 234 (342)
T cd06329 222 ADAGLKLPFYTPY 234 (342)
T ss_pred HHcCCCceEEecc
Confidence 7778776666654
No 76
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=88.31 E-value=22 Score=33.28 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechh----hhc--hhhHHHHHHhcCCeEEec-CccchhhchHHHHHHHhcCCh
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNA----ILT--AGFYQEKLQHEGFEVVLP-DKATMEHTLIPALDALNRKDV 267 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~----T~~--s~lY~~~l~~~Gi~vv~P-~~~~q~~~l~~~i~~ik~g~~ 267 (332)
+..+++++.+.|++ |||+++.+. +.. ..=|++.++++|++.... .....+. -...+..+-....
T Consensus 160 ~~~a~~~L~~~Ghr--------~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~~~~~~~~~~~-~~~~~~~~l~~~~ 230 (311)
T TIGR02405 160 IELLMANLYQQGHR--------HISFLGVDPSDKTTGLMRHNAYLAYCESANLEPIYQTGQLSHES-GYVLTDKVLKPET 230 (311)
T ss_pred HHHHHHHHHHcCCC--------cEEEEccCcccchhHHHHHHHHHHHHHHcCCCceeeeCCCCHHH-HHHHHHHHHhcCC
Confidence 44567788888876 999997421 111 223888999999863321 1111111 1111222211111
Q ss_pred HH----HHHHHHHHHHHHHhCC-CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 268 EG----ARNLLRIALQVLLVRA-VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 268 ~~----a~~~l~~~~~~L~~~g-ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.. .......+++.+.+.| -|.-|.|+...++..- ..+ .+..|+ +.+.+++.+++...+.
T Consensus 231 tAi~~~~D~~A~g~~~~l~~~g~~dvsvvgfd~~~~~~~-~~p-~lttv~~~~~~~g~~A~~~L~~~ 295 (311)
T TIGR02405 231 TALVCATDTLALGAAKYLQELDRSDVQVSSVGNTPLLSF-LFP-NTVSIDPGYYEAGKAAASQLIKQ 295 (311)
T ss_pred CEEEECCcHHHHHHHHHHHHcCCCCeEEEeeCCchhhcc-cCC-CCceEecCHHHHHHHHHHHHHHH
Confidence 11 1222334445565655 3666888887764321 122 234444 4677777777776554
No 77
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=88.17 E-value=20 Score=32.54 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=78.9
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 159 VFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 159 ~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
+.|.+.++|.|++ +++.....++++.+ .++|++-+ ...+++++.+.|.+ +|
T Consensus 58 ~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~g~~--------~i 128 (275)
T cd06295 58 RYLASGRADGVILIGQHDQDPLPERLAE-TGLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLARGRR--------RI 128 (275)
T ss_pred HHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------eE
Confidence 3456678998765 56544444555543 35665433 23444555555543 89
Q ss_pred EEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHHHHHh
Q 020005 219 GVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 219 GlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~~L~~ 283 (332)
++++.+.. .+..-|.+.++++|+++ +.+.....+. ....+ +.++++. .+. .......+++.+.+
T Consensus 129 ~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~ 207 (275)
T cd06295 129 AFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEES-GRAAMRALLERGPDFDAVFAASDLMALGALRALRE 207 (275)
T ss_pred EEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 99875432 12233778888877432 2222211111 11112 2343332 111 12233345555555
Q ss_pred CCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 284 RAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 284 ~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.|. |..|.|+-..+..... .+ .+..|+ +...+++.+++.....
T Consensus 208 ~g~~ip~~i~ii~~d~~~~~~~~-~~-~~~~v~~~~~~~g~~a~~~l~~~ 255 (275)
T cd06295 208 AGRRVPEDVAVVGFDDIPLAAYA-DP-PLTTVRQDIEEAGRLLVDLLLAL 255 (275)
T ss_pred hCCCCccceEEEeeCCchHhhcc-CC-CceEEeCcHHHHHHHHHHHHHHH
Confidence 553 6778888877755322 22 123343 4456777777665443
No 78
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=87.62 E-value=3.5 Score=39.73 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=68.1
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
+|+.|-.+|-.-....++.+||.....+....+++|.-.. |.+ ...+.++.+++ ++
T Consensus 118 pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-----------Da~---------~~~g~deAI~R----a~ 173 (292)
T PRK11320 118 AKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-----------DAL---------AVEGLDAAIER----AQ 173 (292)
T ss_pred ccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec-----------Ccc---------cccCHHHHHHH----HH
Confidence 4666777666666778899999877765434667664411 111 01233443332 45
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee-echH------HHHHHHHHhcCC
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii-~Ive------~t~~~l~~~g~k 208 (332)
...++|||+|.+++-+.-..+.++.+.+++|++ +++. ...+++.+.|.+
T Consensus 174 aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~ 229 (292)
T PRK11320 174 AYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVA 229 (292)
T ss_pred HHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 677899999999997765567777888888874 4442 246778888773
No 79
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=87.59 E-value=28 Score=33.62 Aligned_cols=76 Identities=20% Similarity=0.077 Sum_probs=42.8
Q ss_pred HHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 162 EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 162 e~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
++.++++|+=+..+.... ...+.+..++|++.. ....++.+.+.+. +||
T Consensus 64 ~~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~--------~~v 135 (360)
T cd06357 64 REDGVRVIFGCYTSSSRKAVLPVVERHDALLWYPTLYEGFEYSPNVIYTGAAPNQNSVPLADYLLRHYG--------KRV 135 (360)
T ss_pred hhCCCcEEEeCccHHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHhcCC--------cEE
Confidence 356788777555554432 223333445555421 1234455554432 389
Q ss_pred EEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 219 GVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 219 GlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
++++.+... ....+.+.+++.|++++.
T Consensus 136 ~~i~~d~~~g~~~~~~~~~~~~~~G~~vv~ 165 (360)
T cd06357 136 FLVGSNYIYPYESNRIMRDLLEQRGGEVLG 165 (360)
T ss_pred EEECCCCcchHHHHHHHHHHHHHcCCEEEE
Confidence 999765432 234678889888999764
No 80
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=87.38 E-value=22 Score=32.11 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=78.4
Q ss_pred HHHHHcCCcEEEEeC-CC--chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHh--cCCCCcCCC
Q 020005 159 VFLEKAGARCIVMPC-HL--SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEA--NMKPLEAGS 214 (332)
Q Consensus 159 ~~Le~~Gad~IvI~C-NT--aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~--g~k~~~~~~ 214 (332)
+.+.+.++|.|++.. .+ ....++++.+ .++|++.+ ...+++++.+. |.
T Consensus 49 ~~~~~~~vdgii~~~~~~~~~~~~i~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~------- 120 (273)
T cd06305 49 DQAIAQKVDAIIIQHGRAEVLKPWVKRALD-AGIPVVAFDVDSDNPKVNNTTQDDYSLARLSLDQLVKDLGGK------- 120 (273)
T ss_pred HHHHHcCCCEEEEecCChhhhHHHHHHHHH-cCCCEEEecCCCCCCccceeeechHHHHHHHHHHHHHHhCCC-------
Confidence 345566899888853 22 2334455543 35665544 22344555552 33
Q ss_pred CceEEEEechh----hhchhhHHHHHHhcC-CeEEec--Cc--cchhhchHHHHH-HHhcC-Ch--HH----HHHHHHHH
Q 020005 215 PLRIGVLAKNA----ILTAGFYQEKLQHEG-FEVVLP--DK--ATMEHTLIPALD-ALNRK-DV--EG----ARNLLRIA 277 (332)
Q Consensus 215 ~~rVGlLaT~~----T~~s~lY~~~l~~~G-i~vv~P--~~--~~q~~~l~~~i~-~ik~g-~~--~~----a~~~l~~~ 277 (332)
++|++++... ..+..-|++.+++++ ++++.. .. ..++. ....++ .+++. +. +. .......+
T Consensus 121 -~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~ 198 (273)
T cd06305 121 -GNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQD-AAAQVEAVLKKYPKGGIDAIWAAWDEFAKGA 198 (273)
T ss_pred -CCEEEEEccCCchHHHHHHHHHHHHHHCCCcEEecccccccccchhH-HHHHHHHHHHHCCCcccCeEEEcChhhhHHH
Confidence 4899997431 122345788888887 654321 11 11111 111122 23322 12 21 12233445
Q ss_pred HHHHHhCCC--CEEEECCCCcccC----CCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 278 LQVLLVRAV--NTVILASDDMQDL----LPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 278 ~~~L~~~ga--d~VILGCTElpli----~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
++.+.+.|- |..|.|+-..|.. .....+ ....|+ +...+++.+++.....-
T Consensus 199 ~~~l~~~g~~~di~iig~d~~~~~~~~i~~~~~~-~~~tv~~~~~~~g~~a~~~l~~~l 256 (273)
T cd06305 199 KQALDEAGRTDEIKIYGVDISPEDLQLMREPDSP-WVATAAQDPALIGKVAVRNVARLI 256 (273)
T ss_pred HHHHHHcCCCCCceEEEecCCHHHHHHHHccCCc-eEEEecCCHHHHHHHHHHHHHHHH
Confidence 556666653 6889999888742 221112 122333 45567777776665543
No 81
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=87.32 E-value=28 Score=33.30 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=20.0
Q ss_pred ceEEEEechhh---hchhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNAI---LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv~ 245 (332)
++|+++....- -....+++.+++.|++++.
T Consensus 145 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~ 177 (362)
T cd06343 145 AKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVA 177 (362)
T ss_pred ceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEE
Confidence 48999976442 2234567778888888754
No 82
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=87.24 E-value=22 Score=32.00 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=78.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++........ .+.+.+..++|++-+- +.+++++.+.|.+
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~~-------- 118 (269)
T cd06275 47 YLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPEDDFADKIQDNSEEGGYLATRHLIELGHR-------- 118 (269)
T ss_pred HHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecccCCCCCCeEeeCcHHHHHHHHHHHHHCCCc--------
Confidence 34567788999888755432332 3444443467765541 2334555555544
Q ss_pred eEEEEechhhh-----chhhHHHHHHhcCCeEEe----cCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAIL-----TAGFYQEKLQHEGFEVVL----PDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T~-----~s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~~L 281 (332)
+|++++..... +..-|.+.++++|+++.. ......+. ....++ .++.+ +.+. .......+++.+
T Consensus 119 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l 197 (269)
T cd06275 119 RIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEG-GYEAMQRLLAQPKRPTAVFCGNDLMAMGALCAA 197 (269)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHH-HHHHHHHHHcCCCCCcEEEECChHHHHHHHHHH
Confidence 99999753221 122367788888876421 11111110 111122 23332 2211 122233455566
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
.+.|. |.-|.|+...+... ...+ .+..|+ +...+++.+++....
T Consensus 198 ~~~g~~vp~di~vvg~d~~~~~~-~~~~-~l~tv~~~~~~~g~~a~~~l~~ 246 (269)
T cd06275 198 QEAGLRVPQDLSIIGYDDIELAR-YFSP-PLTTIHQPKDRLGELAVNMLLE 246 (269)
T ss_pred HHcCCCCCcceEEEEeCChhhhh-hcCC-CceEEeCCHHHHHHHHHHHHHH
Confidence 66654 67788887665432 1111 123333 344566666665443
No 83
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=87.09 E-value=23 Score=31.98 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
.++.+.+.++|.|++. |......+.++++ .++|++-+ ...+++++.+.|.+ +|
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~iPvv~~~~~~~~~~~V~~d~~~ag~~a~~~L~~~g~~--------~i 117 (265)
T cd06285 47 AIEMLLDRRVDGLILGDARSDDHFLDELTR-RGVPFVLVLRHAGTSPAVTGDDVLGGRLATRHLLDLGHR--------RI 117 (265)
T ss_pred HHHHHHHcCCCEEEEecCCCChHHHHHHHH-cCCCEEEEccCCCCCCEEEeCcHHHHHHHHHHHHHCCCc--------cE
Confidence 3456788999977764 4444444566544 36676643 23466677776654 89
Q ss_pred EEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHHh
Q 020005 219 GVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 219 GlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~~ 283 (332)
++++.... -+..=|.+.+++.|+++ +.......+. ....++. ++.+. .+. .......+++.+.+
T Consensus 118 ~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 196 (265)
T cd06285 118 AVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSGFDIEG-GEAAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARD 196 (265)
T ss_pred EEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 99975332 11222677788888753 1111111111 1112222 33322 111 12233345556666
Q ss_pred CCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 284 RAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 284 ~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.|. |.-|.|+-..+.... ..+ .+..|+ +...+++.+++.....
T Consensus 197 ~g~~~p~di~iig~d~~~~~~~-~~p-~~t~i~~~~~~~g~~a~~~l~~~ 244 (265)
T cd06285 197 RGLRVPDDVALVGYNDIPLVAR-LPV-PLTTVRSPFHQIGRTALRLLLET 244 (265)
T ss_pred cCCCCCcceEEEeecCcHHHhc-CCC-CceeEeCCHHHHHHHHHHHHHHH
Confidence 553 667888888775432 112 234454 4456777777766554
No 84
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=86.72 E-value=22 Score=31.56 Aligned_cols=160 Identities=11% Similarity=0.083 Sum_probs=77.9
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCCCCcC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k~~~~ 212 (332)
++.|...++|.+++...+.+. .++.+++ .++|++-+ ...+++++.+. |.
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~-~~ip~V~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~----- 121 (267)
T cd01536 48 IEDLIAQGVDGIIISPVDSAALTPALKKANA-AGIPVVTVDSDIDGGNRLAYVGTDNYEAGRLAGEYLAKLLGGK----- 121 (267)
T ss_pred HHHHHHcCCCEEEEeCCCchhHHHHHHHHHH-CCCcEEEecCCCCccceeEEEecCHHHHHHHHHHHHHHHhCCC-----
Confidence 345666688877654322221 3455443 23444332 22344555554 33
Q ss_pred CCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEec---CccchhhchHHHHHHHh-cC-ChHH----HHHHHHHH
Q 020005 213 GSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVLP---DKATMEHTLIPALDALN-RK-DVEG----ARNLLRIA 277 (332)
Q Consensus 213 ~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~P---~~~~q~~~l~~~i~~ik-~g-~~~~----a~~~l~~~ 277 (332)
++|++++.... ....-|++.+++. |+++... +...++ ..+.+..+. .+ +... .......+
T Consensus 122 ---~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~d~~a~~~ 196 (267)
T cd01536 122 ---GKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAVQDGNWDREK--ALQAMEDLLQANPDIDAIFAANDSMALGA 196 (267)
T ss_pred ---ceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHH--HHHHHHHHHHhCCCccEEEEecCCchHHH
Confidence 49999976432 2334478888888 4664321 221111 122233322 22 1111 11223345
Q ss_pred HHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 278 LQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 278 ~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
++.+.+.|. |.-|.|+-..+...... .....-.|+ +...+++.+++.....
T Consensus 197 ~~~l~~~g~~~~i~ivg~d~~~~~~~~~~~~~~~~tv~~~~~~~g~~a~~~l~~~ 251 (267)
T cd01536 197 VAALKAAGRKGDVKIVGVDGSPEALAAIKEGGILATVAQDPYTQGYLAVEAAVKL 251 (267)
T ss_pred HHHHHhcCCCCCceEEecCCChhHHHHHHcCCeeEEEecCHHHHHHHHHHHHHHH
Confidence 556666776 77788887766543111 111123344 3467777777766544
No 85
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=86.36 E-value=3.5 Score=38.46 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=81.6
Q ss_pred cccccccCCCCccccCCCcceeeccCCCCCcccccccCCCCCCCCcchhhh--ccCeEEEEeCCChHHHHHHHHHHHHHh
Q 020005 28 TLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLN--QANTVGIVGGASVDSTLNLLGKLVQLS 105 (332)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~IGIiGGmGp~AT~~~y~kI~~~t 105 (332)
-.+-||| |.-..+++.+. +|.|---.-++.+-+-..+-..|+ .|..+-|=||- .....+.++|++..
T Consensus 86 ~~yH~~s----V~Rga~~~llv-----~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs--~~~~~~~~~l~erg 154 (306)
T KOG2949|consen 86 MLYHCRS----VARGAKRPLLV-----GDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGS--NSRITAAKRLVERG 154 (306)
T ss_pred HHHHHHH----HHccCCCceEE-----EecCcccccccHHHHHHHHHHHHHhcCCceEEEccCc--HHHHHHHHHHHHcC
Confidence 3455555 22235667665 455544444444444556666666 45667777665 55566777776554
Q ss_pred ccCCCCCEEEecCCcchhh--hhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHH
Q 020005 106 GEENDFPFLLCSDPLLNKE--LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEV 183 (332)
Q Consensus 106 ~~d~~~~~vi~s~p~ip~~--ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l 183 (332)
+|++-.- --.|+. ++++ - ..++....-...+.+.+..|++.||-.+++-|- .|+....+
T Consensus 155 -----ipV~gHv-GLTPQ~v~~lGG-y-----------k~QGr~~~~a~~l~EtAmqLqk~Gc~svvlECv-P~~~A~~i 215 (306)
T KOG2949|consen 155 -----IPVMGHV-GLTPQAVSVLGG-Y-----------KPQGRNIASAVKLVETAMQLQKAGCFSVVLECV-PPPVAAAI 215 (306)
T ss_pred -----Cceeeec-cCChhhhhhccC-c-----------CccchhHHHHHHHHHHHHHHHhcccceEeeecC-ChHHHHHH
Confidence 3333211 011332 1211 0 011212223344667788899999999999998 59999999
Q ss_pred hhhCCCCeeech
Q 020005 184 CKGCSVPFLHVS 195 (332)
Q Consensus 184 ~~~~~iPii~Iv 195 (332)
....+||-|+|.
T Consensus 216 Ts~lsiPTIGIG 227 (306)
T KOG2949|consen 216 TSALSIPTIGIG 227 (306)
T ss_pred HhccCCcceeec
Confidence 999999999984
No 86
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=86.27 E-value=14 Score=35.03 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=21.7
Q ss_pred HHHH-HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 159 ~~Le-~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
+.|. +.|+++|+=++.+.... .-++.+..++|+|+.
T Consensus 64 ~~li~~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 101 (345)
T cd06338 64 ERLITQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAG 101 (345)
T ss_pred HHHHhhcCccEEecCCcchhHHHHHHHHHHhCCcEEec
Confidence 3444 34888887776553322 344555667888765
No 87
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=86.16 E-value=15 Score=35.29 Aligned_cols=81 Identities=11% Similarity=-0.048 Sum_probs=44.6
Q ss_pred HHHH-HHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFL-EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~L-e~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
+++| ++.|+++|+=+.++.... .-.+-+..++|++.. ....++.+.+..
T Consensus 59 a~~Li~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------- 131 (348)
T cd06355 59 ARKLLTQDKVAAVFGCWTSASRKAVLPVFERHNGLLFYPVQYEGLEQSPNVFYTGAAPNQQIIPAVDWLMSNK------- 131 (348)
T ss_pred HHHHHHhCCCcEEEeccchhhHHHHHHHHhccCCceecCCCccCCCCCCCEEEeCCChHHhHHHHHHHHHhcc-------
Confidence 3344 356888887655553322 233334445665532 122334444431
Q ss_pred CCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
+.+||++++.+... ....+++.+++.|++++.
T Consensus 132 g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~ 166 (348)
T cd06355 132 GGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVG 166 (348)
T ss_pred CCCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEe
Confidence 12489999876532 234567788888998864
No 88
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=86.04 E-value=25 Score=31.47 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=78.6
Q ss_pred HHHHHHcCCcEEEEe-CCCc--hhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCCCCcC
Q 020005 158 RVFLEKAGARCIVMP-CHLS--HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~-CNTa--H~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k~~~~ 212 (332)
++.+.+.++|.+++. .++. -.++.++++ .++|++.+ ...+++++.+. |.
T Consensus 48 ~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~-~~ipvv~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~----- 121 (268)
T cd06323 48 IEDLITRGVDAIIINPTDSDAVVPAVKAANE-AGIPVFTIDREANGGEVVSQIASDNVAGGKMAAEYLVKLLGGK----- 121 (268)
T ss_pred HHHHHHcCCCEEEEcCCChHHHHHHHHHHHH-CCCcEEEEccCCCCCceEEEEccCcHHHHHHHHHHHHHHhCCC-----
Confidence 345666788886663 2221 123444433 35665433 23355666665 33
Q ss_pred CCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEe-cC-ccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHH
Q 020005 213 GSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVL-PD-KATMEHTLIPAL-DALNRK-DVEG----ARNLLRIAL 278 (332)
Q Consensus 213 ~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~-P~-~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~ 278 (332)
++|++++.+.. .+..-|++.++++ |++++. +. ....+. ....+ +.++++ +.+. .......++
T Consensus 122 ---~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~ 197 (268)
T cd06323 122 ---GKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVASQPADFDRAK-GLNVMENILQAHPDIKGVFAQNDEMALGAI 197 (268)
T ss_pred ---ceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccCCCCHHH-HHHHHHHHHHHCCCcCEEEEcCCchHHHHH
Confidence 38999975321 1223467788885 887653 21 111111 11112 223222 1111 112233455
Q ss_pred HHHHhCCC-CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 279 QVLLVRAV-NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 279 ~~L~~~ga-d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.+.|. |.-|+|....+...... +......|+ +...+++.+++.....
T Consensus 198 ~~l~~~g~~di~iig~d~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~~~ 250 (268)
T cd06323 198 EALKAAGKDDVKVVGFDGTPDALKAIKAGKMAATVAQQPALMGRLAVETADKY 250 (268)
T ss_pred HHHHHcCCCCcEEEEeCCCHHHHHHHHcCCeeEEEecChHHHHHHHHHHHHHH
Confidence 66777787 88888876655432111 111123454 4566777766666554
No 89
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=85.88 E-value=16 Score=34.28 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeechH-------------------------HHHHHHHHhcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSE-------------------------CVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Ive-------------------------~t~~~l~~~g~k~~~ 211 (332)
++.|.+.++++|+-|-++.... .-.+.+..++|+|+..- ..++.+++..
T Consensus 59 ~~~li~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 133 (334)
T cd06342 59 AQKLVDDGVVGVVGHLNSGVTIPASPIYADAGIVMISPAATNPKLTERGYKNVFRVVARDDQQGPAAAKYAVETL----- 133 (334)
T ss_pred HHHHHhCCceEEECCCccHhHHHhHHHHHhCCCeEEecCCCCchhhcCCCceEEeccCCcHHHHHHHHHHHHHhc-----
Confidence 3444445999887664444332 34555567888887531 1223333221
Q ss_pred CCCCceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 212 AGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+.++|+++..+...- ...+++.+++.|++++.
T Consensus 134 --~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~ 168 (334)
T cd06342 134 --KAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVA 168 (334)
T ss_pred --CCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEE
Confidence 124899997765422 23456667777888764
No 90
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=85.84 E-value=31 Score=32.50 Aligned_cols=122 Identities=9% Similarity=0.098 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCe---EEecCccchhhchHHHHHH-HhcCC
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFE---VVLPDKATMEHTLIPALDA-LNRKD 266 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~---vv~P~~~~q~~~l~~~i~~-ik~g~ 266 (332)
..+++++.++|++ +|++++.... .+..-|.+.++.+|+. .+.......+. -...++. +..+.
T Consensus 163 ~~a~~~l~~~G~~--------~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 233 (327)
T PRK10339 163 KEIIDFYINQGVN--------RIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSS-GYELAKQMLARED 233 (327)
T ss_pred HHHHHHHHHCCCC--------eEEEeCCccccchhhHHHHHHHHHHHHcCCCChhheeecCcChhH-HHHHHHHHHhCCC
Confidence 4556777777765 9999965321 1223466777777761 11111111110 1111222 33222
Q ss_pred -hHH----HHHHHHHHHHHHHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 267 -VEG----ARNLLRIALQVLLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 267 -~~~----a~~~l~~~~~~L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+. .......+++.|.+.|. |.-|.|+.+.+...-. .+ .+..|| +.+.+++.+++...+.
T Consensus 234 ~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD~~~~~~~~-~p-~ltti~~~~~~~g~~A~~~l~~~ 303 (327)
T PRK10339 234 YPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFT-FP-PLSTVRIHSEMMGSQGVNLLYEK 303 (327)
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCChhHHHhC-CC-CceeeecCHHHHHHHHHHHHHHH
Confidence 111 12233345566666663 8899999887754311 12 234454 5677888888776543
No 91
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=85.60 E-value=8 Score=35.15 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeee---ch-HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLH---VS-ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~---Iv-e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+++.|++.+.+....+. .++.++.+.+++|+.= |. .+.++.+.+.|.. +| +++|
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~--------~v-vlgs 102 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVD--------RV-IIGT 102 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC--------EE-EECh
Confidence 4556788999998888766554 2467788888888652 22 2444666666664 44 6777
Q ss_pred hhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 224 NAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
..--....+.+..++.|.+-+.++-+.+...+. + .|..+.......+.++.+.+.|++.+++.
T Consensus 103 ~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~-----~-~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 103 AAVENPDLVKELLKEYGPERIVVSLDARGGEVA-----V-KGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred HHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEE-----E-cCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 555455678888888775533433222211110 0 12111111122345566777899977753
No 92
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=85.58 E-value=1.5 Score=42.17 Aligned_cols=57 Identities=33% Similarity=0.525 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhh--------hCCCCeeechHHHH
Q 020005 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCK--------GCSVPFLHVSECVA 199 (332)
Q Consensus 143 ~~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~--------~~~iPii~Ive~t~ 199 (332)
...+.....+......+.+.++|+|+|+-||-+=|.++|+-|. ..++|++|....+.
T Consensus 200 ~~~~~~~sl~~~~~kL~~~ke~gad~ivt~Cp~Chlq~D~~q~~i~~~~g~~~~~pv~~~~Qll~ 264 (293)
T COG2048 200 SSLNLSVSLKLAKRKLQSAKEAGADCIVTPCPLCHLQLDRGQPEIKKKFGIDYDIPVLHLSQLLG 264 (293)
T ss_pred hcccHHHHHHHHHHHHHHHHhcCCCEEEecCccceeehhhccHHHHHhcCCCCCCceeeHHHHHH
Confidence 3445567777777888888999999999999999999876554 24799999977664
No 93
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=85.44 E-value=27 Score=31.34 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=78.6
Q ss_pred HHHHHHcCCcEEEE-eCCCch-hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVM-PCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI-~CNTaH-~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.+.+.++|.|++ ++++.. ..++.++ ..++|++-+ ...+++.+.+.|.+
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~~g~~-------- 119 (270)
T cd01545 49 RALLQRSRVDGVILTPPLSDNPELLDLLD-EAGVPYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLIDLGHR-------- 119 (270)
T ss_pred HHHHHHCCCCEEEEeCCCCCccHHHHHHH-hcCCCEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHHCCCc--------
Confidence 45577789998765 455322 2234443 346776643 23445556665543
Q ss_pred eEEEEechhh---hc--hhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcC-ChH----HHHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI---LT--AGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRK-DVE----GARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T---~~--s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g-~~~----~a~~~l~~~~~~L 281 (332)
+|++++.... .. ..-|++.+++.|+++ +.......+. -...+.. +..+ +.+ ........+++.+
T Consensus 120 ~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~ 198 (270)
T cd01545 120 RIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFES-GLEAAEALLALPDRPTAIFASNDDMAAGVLAVA 198 (270)
T ss_pred eEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhh-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence 8999863221 11 122677888888764 2222211111 0111222 3222 111 1112233444455
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|.-|.|+-..+....- .+ .+..|+ +.+.+++.+++.....
T Consensus 199 ~~~g~~~p~~i~vig~d~~~~~~~~-~~-~~~ti~~~~~~~g~~a~~~l~~~ 248 (270)
T cd01545 199 HRRGLRVPDDLSVVGFDDTPIATTI-WP-PLTTVRQPIAEMARAAAELLIAR 248 (270)
T ss_pred HHcCCCCCCceEEEEECChhHHhcC-CC-CceEeeCcHHHHHHHHHHHHHHH
Confidence 5544 36777888777643321 11 123343 5666788777776654
No 94
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=85.37 E-value=12 Score=35.06 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=46.3
Q ss_pred HHHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeech----------------------HHHHHHHHH-hcCCCCc
Q 020005 157 KRVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS----------------------ECVAKELKE-ANMKPLE 211 (332)
Q Consensus 157 ~~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv----------------------e~t~~~l~~-~g~k~~~ 211 (332)
.++.|.+ .|+++|+-++.+.... .-++.+..++|+++.. ...++.+++ .+
T Consensus 60 ~~~~l~~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g----- 134 (343)
T PF13458_consen 60 AARKLIDDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKKLG----- 134 (343)
T ss_dssp HHHHHHHTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHTTT-----
T ss_pred HHHHhhhhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHHcC-----
Confidence 3445544 8888888887764433 2333344567766642 223344433 23
Q ss_pred CCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
.+||++++..... ....+++.+++.|++++
T Consensus 135 ---~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv 167 (343)
T PF13458_consen 135 ---AKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVV 167 (343)
T ss_dssp ---TSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ---CcEEEEEecCchhhhHHHHHHHHHHhhcCceec
Confidence 3499999875422 23346777888899875
No 95
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=85.24 E-value=12 Score=35.70 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=37.6
Q ss_pred ceEEEEech-hhh---chhhHHHHHHhcCCeEEecCc--cchhhchHHHHHHHhcCChH-----HHHHHHHHHHHHHHhC
Q 020005 216 LRIGVLAKN-AIL---TAGFYQEKLQHEGFEVVLPDK--ATMEHTLIPALDALNRKDVE-----GARNLLRIALQVLLVR 284 (332)
Q Consensus 216 ~rVGlLaT~-~T~---~s~lY~~~l~~~Gi~vv~P~~--~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~~~L~~~ 284 (332)
++|++|... ... -...+++.+++.|++++.... ... ..+.+.+..+++...+ ..-.....+++.+.+.
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~~~~ 215 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGD-TDFQAQITAVLNSKPDLIVISALAADGGNLVRQLREL 215 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC-CCHHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHc
Confidence 389988642 211 123567778888888763210 001 1133334455432211 0112223445556666
Q ss_pred CCCEEEECCC
Q 020005 285 AVNTVILASD 294 (332)
Q Consensus 285 gad~VILGCT 294 (332)
|.+..++++.
T Consensus 216 g~~~~~~~~~ 225 (344)
T cd06348 216 GYNGLIVGGN 225 (344)
T ss_pred CCCCceeccc
Confidence 7666666654
No 96
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.95 E-value=31 Score=31.63 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCceEE
Q 020005 159 VFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 159 ~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
+.+.+.++|.|++ ++......++++++ .++|++-+ ...+++.+.+.|.+ +|+
T Consensus 50 ~~~~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~L~~~g~~--------~i~ 120 (283)
T cd06279 50 ALVVSALVDGFIVYGVPRDDPLVAALLR-RGLPVVVVDQPLPPGVPSVGIDDRAAAREAARHLLDLGHR--------RIG 120 (283)
T ss_pred HHHHhcCCCEEEEeCCCCChHHHHHHHH-cCCCEEEEecCCCCCCCEEeeCcHHHHHHHHHHHHHcCCC--------cEE
Confidence 4567788997766 44333344555543 35565432 33455666666654 899
Q ss_pred EEech
Q 020005 220 VLAKN 224 (332)
Q Consensus 220 lLaT~ 224 (332)
+++.+
T Consensus 121 ~i~~~ 125 (283)
T cd06279 121 ILGLR 125 (283)
T ss_pred EecCc
Confidence 99764
No 97
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=84.79 E-value=7.2 Score=37.16 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=67.2
Q ss_pred chhhhccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 74 DALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 74 ~~~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
..-.++.+.||+||=-|..-. .||+.+++....+ ..+-..-.|.+- +.. |..........+.
T Consensus 104 A~~~t~~~~IgViaT~~Tvks-~~y~~~i~~~~~~--~~V~~la~p~lV-----------~lv----E~g~~~~~~~~~~ 165 (269)
T COG0796 104 AVALTRNGRIGVIATPATVKS-NAYRDLIARFAPD--CEVESLACPELV-----------PLV----EEGIRGGPVALEV 165 (269)
T ss_pred HHHhccCCeEEEEeccchhcc-HHHHHHHHHhCCC--CEEEEecCcchH-----------HHH----hcccccCHHHHHH
Confidence 333445678999975444443 4677776655443 111111122221 111 0111122234455
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCC--CCeeechHHHHHHHHHh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCS--VPFLHVSECVAKELKEA 205 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~--iPii~Ive~t~~~l~~~ 205 (332)
+.+....|...|+|.+|+.|- |+- -+.|++..+ +++|+-.+++++++.+.
T Consensus 166 l~~~l~~~~~~~~DtlVLGCT--HyPll~~~i~~~~~~~v~lids~~~~a~~~~~~ 219 (269)
T COG0796 166 LKEYLPPLQEAGPDTLVLGCT--HYPLLKPEIQQVLGEHVALIDSGAETARRLARL 219 (269)
T ss_pred HHHHhcchhccCCCEEEEeCc--CcHHHHHHHHHHhCCCceEeCCHHHHHHHHHHH
Confidence 556677899999999999996 653 578888775 99999888888887664
No 98
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=84.24 E-value=38 Score=33.56 Aligned_cols=172 Identities=15% Similarity=0.046 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHHH---HHcCCcEEEEeCCCchhhHHHHhhhCC---------CCeeechHHHHHHHHHhcC--CCC
Q 020005 145 LDDSLIVENLRRKRVFL---EKAGARCIVMPCHLSHIWHDEVCKGCS---------VPFLHVSECVAKELKEANM--KPL 210 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~L---e~~Gad~IvI~CNTaH~~~d~l~~~~~---------iPii~Ive~t~~~l~~~g~--k~~ 210 (332)
++.+.........++.| .+.|++.||.+|.+-...+.+..+... ..|.+.+....+.+.+... ++.
T Consensus 216 G~~~~~~~~a~~n~~~~~~~~~~g~~~Vvt~c~~C~~~l~~y~~~l~~~~~~~~~~~~v~~~~~~l~e~L~~~~~~~~~~ 295 (407)
T PRK11274 216 NAQEGGLARMRRNIDAWWPAIEAGAEAIVMTASGCGATVKEYGHLLRDDPAYAEKAARVSALTRDLSELLPAEPLELLAL 295 (407)
T ss_pred CCHHHHHHHHHHHHHHhhhhhhcCCCEEEECCccHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhHHHHHHHhccccccc
Confidence 34444444444444444 678999999999987665544332221 0122222223333332211 100
Q ss_pred cCCCCceEEEEec----hhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCC
Q 020005 211 EAGSPLRIGVLAK----NAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAV 286 (332)
Q Consensus 211 ~~~~~~rVGlLaT----~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~ga 286 (332)
-.+.+.+|.+=-. .+.-....-++.|++.|++++...+..+==-.-. ...++ ..+-+.......++.+.+.|+
T Consensus 296 ~~~~~~~v~~HdpChl~~~~~~~~~~r~ll~~~g~~~~e~~~~~~CCG~gG-~~~~~--~~e~s~~i~~~k~~~~~~~~a 372 (407)
T PRK11274 296 LGRPDRRVAFHPPCTLQHGQKLRGKVERLLTRLGFELTLVADSHLCCGSAG-TYSLL--QPELSYQLRDNKLAALEAGKP 372 (407)
T ss_pred ccCCCCeEEEeCcchhhcccCcHhhHHHHHHhCCCeEEECCCCCCCcCcch-hhhcC--CHHHHHHHHHHHHHHHHhcCC
Confidence 0001224444111 0000012234556656887765422111000000 00111 122244444555667777899
Q ss_pred CEEEECCCCcccCCCCCCCCCCceechHHHHHHHH
Q 020005 287 NTVILASDDMQDLLPPDDPLLKKCIDPMDALARST 321 (332)
Q Consensus 287 d~VILGCTElpli~~~~~~~~ipvID~~~~lA~a~ 321 (332)
|.||-+|+-=-.-+.. ...+++.++++.+++++
T Consensus 373 d~ivt~Cp~C~~ql~~--~~~~~v~H~~ell~~al 405 (407)
T PRK11274 373 EVIVTANIGCQTHLQS--GTRTPVRHWIELVDEAL 405 (407)
T ss_pred CEEEecCcCHHHHHcC--CCCCceeeHHHHHHHHh
Confidence 9999999533222322 22468899999999875
No 99
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.03 E-value=10 Score=38.36 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=43.1
Q ss_pred cCCcEEEEeCC--CchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CN--TaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|+||.+-. ..|+.+...++ .++||++=++...+. ... +.|||-||.| |-.+.+....|...|
T Consensus 76 ~~~dlVV~Spgi~~~~p~~~~a~~-~~i~i~s~~e~~~~~---~~~--------~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 76 DGFDVIFKTPSMRIDSPELVKAKE-EGAYITSEMEEFIKY---CPA--------KVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred ccCCEEEECCCCCCCchHHHHHHH-cCCcEEechHHhhhh---cCC--------CEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 45788877631 12445555443 589999866543221 111 2799999988 445567778888777
Q ss_pred CeEE
Q 020005 241 FEVV 244 (332)
Q Consensus 241 i~vv 244 (332)
..+.
T Consensus 144 ~~~~ 147 (458)
T PRK01710 144 YKTW 147 (458)
T ss_pred CCEE
Confidence 7654
No 100
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=84.01 E-value=31 Score=30.89 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=77.7
Q ss_pred HHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.+.+.++|.|++...+ .-..++++++ .++|++-+ ...+++++.+.|.+
T Consensus 47 ~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~-------- 117 (265)
T cd06299 47 YLDNLLSQRVDGIIVVPHEQSAEQLEDLLK-RGIPVVFVDREITGSPIPFVTSDPQPGMTEAVSLLVALGHK-------- 117 (265)
T ss_pred HHHHHHhcCCCEEEEcCCCCChHHHHHHHh-CCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC--------
Confidence 3456778899988775432 2223566554 35665433 22334455555543
Q ss_pred eEEEEechhhh-----chhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCChHH----HHHHHHHHHHHHH
Q 020005 217 RIGVLAKNAIL-----TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKDVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 217 rVGlLaT~~T~-----~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~~~~----a~~~l~~~~~~L~ 282 (332)
+|++++...+. +..-|.+.++++|++. +.......+. -...+.. ++++ .+. .......+++.+.
T Consensus 118 ~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~~av~~~~d~~a~gv~~al~ 195 (265)
T cd06299 118 KIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQES-GYAGATKLLDQG-ATAIIAGDSMMTIGAIRAIH 195 (265)
T ss_pred cEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHH-HHHHHHHHHcCC-CCEEEEcCcHHHHHHHHHHH
Confidence 89998543321 1234788888888532 2222111111 1111222 2322 211 1223334455566
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.|. |..|+|.-..+... -..+ .+..|+ +...+++.+++.....
T Consensus 196 ~~g~~vp~dv~v~g~d~~~~~~-~~~~-~~ttv~~~~~~~g~~a~~~l~~~ 244 (265)
T cd06299 196 DAGLVIGEDISLIGFDDLPVFR-LQTP-PLTVIDQQVEQMGKRAVDMLLSL 244 (265)
T ss_pred HhCCCCCcceeEEEeCCHHHHh-ccCC-CceEEeCCHHHHHHHHHHHHHHH
Confidence 6564 77888888777543 1112 122333 3455666666665443
No 101
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=83.58 E-value=16 Score=34.58 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=18.9
Q ss_pred HHHH-HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 159 ~~Le-~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
++|. +.|+++|+-+..+.... ...+-++.++|+|..
T Consensus 59 ~~l~~~~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 96 (334)
T cd06327 59 REWIDRDGVDMIVGGPNSAVALAVQEVAREKKKIYIVT 96 (334)
T ss_pred HHHHhhcCceEEECCccHHHHHHHHHHHHHhCceEEec
Confidence 3444 34777766554433322 334455567777653
No 102
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=83.50 E-value=13 Score=29.62 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCC-----eeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iP-----ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.+++|++.|..++++.-|+... +.+.++ ..+++ |+.-..++++.+++.. ..++|-++|+++.
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~-~~Gi~~~~~~i~ts~~~~~~~l~~~~-------~~~~v~vlG~~~l 91 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSREEYAKKLK-KLGIPVDEDEIITSGMAAAEYLKEHK-------GGKKVYVLGSDGL 91 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHH-HTTTT--GGGEEEHHHHHHHHHHHHT-------TSSEEEEES-HHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHH-hcCcCCCcCEEEChHHHHHHHHHhcC-------CCCEEEEEcCHHH
Confidence 456778999999999998888665 345553 34543 7888889999999841 2349999999743
Q ss_pred hchhhHHHHHHhcCCe
Q 020005 227 LTAGFYQEKLQHEGFE 242 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~ 242 (332)
.+.+++.|++
T Consensus 92 ------~~~l~~~G~e 101 (101)
T PF13344_consen 92 ------REELREAGFE 101 (101)
T ss_dssp ------HHHHHHTTEE
T ss_pred ------HHHHHHcCCC
Confidence 4556666654
No 103
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.34 E-value=34 Score=30.77 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=79.1
Q ss_pred HHHHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.|.+.++|.|++ +++.....++.+.+ .++|++-+ +..+++++.+.|.+
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~~------- 118 (270)
T cd06296 47 WVERLSARRTDGVILVTPELTSAQRAALRR-TGIPFVVVDPAGDPDADVPSVGATNWAGGLAATEHLLELGHR------- 118 (270)
T ss_pred HHHHHHHcCCCEEEEecCCCChHHHHHHhc-CCCCEEEEecccCCCCCCCEEEeCcHHHHHHHHHHHHHcCCC-------
Confidence 345677889998766 45544444566544 35665443 23444556665543
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeEE----ecCccchhhchHHHHH-HHhcCC-hH----HHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALD-ALNRKD-VE----GARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~-~ik~g~-~~----~a~~~l~~~~~~ 280 (332)
+|++++.... .+..-|.+.+++.|+.+. .......+. ....++ .++++. .+ ........+++.
T Consensus 119 -~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~ 196 (270)
T cd06296 119 -RIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGDFSTES-GFRAAAELLALPERPTAIFAGNDLMALGVYEA 196 (270)
T ss_pred -cEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCCCCHHH-HHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence 8998854321 112336677877776432 111111111 111122 233322 11 112233345556
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
|.+.| -|..|.|....+....- .+ .+..|+ ..+.+++.+++.....
T Consensus 197 l~~~g~~~p~~i~v~~~d~~~~~~~~-~~-~~~~i~~~~~~~g~~a~~~l~~~ 247 (270)
T cd06296 197 ARERGLRIPEDLSVVGFDDLPEARWV-SP-PLTTVRQPLREMGRAAVRLLLRL 247 (270)
T ss_pred HHHhCCCCCCceEEEEECChhhhccc-CC-CceEecCCHHHHHHHHHHHHHHH
Confidence 66555 36777777776654321 11 234454 3455667667665543
No 104
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=83.31 E-value=38 Score=31.36 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=56.6
Q ss_pred eEEEEech-hh----hchhhHHHHHHhcCCeEEe--cCccchhhchHHHHHHH-hc-CChHH----HHHHHHHHHHHHHh
Q 020005 217 RIGVLAKN-AI----LTAGFYQEKLQHEGFEVVL--PDKATMEHTLIPALDAL-NR-KDVEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 217 rVGlLaT~-~T----~~s~lY~~~l~~~Gi~vv~--P~~~~q~~~l~~~i~~i-k~-g~~~~----a~~~l~~~~~~L~~ 283 (332)
+++++... .+ .+..-|++.++++|++++. ......+. ....+..+ .+ .+.+. .......+++.+.+
T Consensus 150 ~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~ 228 (295)
T PRK10653 150 KVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLASQPADFDRTK-GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228 (295)
T ss_pred eEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEEecCCCCCHHH-HHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHH
Confidence 57766532 21 2234488889999987643 21211111 11122222 22 22211 12233345566777
Q ss_pred CCC-CEEEECCCCcccCCCC-CCCCCCcee-chHHHHHHHHHHHHHhhccC
Q 020005 284 RAV-NTVILASDDMQDLLPP-DDPLLKKCI-DPMDALARSTIKWVKSAEKG 331 (332)
Q Consensus 284 ~ga-d~VILGCTElpli~~~-~~~~~ipvI-D~~~~lA~a~v~~a~~~~~~ 331 (332)
.|. |.-|.|+-..+..... ..+.....| =+.+.+++.+++.....-+|
T Consensus 229 ~G~~dv~vig~d~~~~~~~~~~~~~~~tti~~~~~~~g~~a~~~l~~~l~g 279 (295)
T PRK10653 229 AGKSDVMVVGFDGTPDGIKAVNRGKLAATIAQQPDQIGAIGVETADKVLKG 279 (295)
T ss_pred cCCCceEEEEeCCCHHHHHHHHcCCceEEeecCHHHHHHHHHHHHHHHhcC
Confidence 777 8999999988754211 111111223 35667777777776554433
No 105
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=82.90 E-value=27 Score=31.67 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-----------------------------HHHHHHHHh--
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-----------------------------CVAKELKEA-- 205 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-----------------------------~t~~~l~~~-- 205 (332)
.++.|.+.++|.|++....+ ..... ....++|++-+.. ..++.+.+.
T Consensus 52 ~~~~l~~~~vd~iI~~~~~~-~~~~~-~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (281)
T cd06325 52 IARKFVADKPDLIVAIATPA-AQAAA-NATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLP 129 (281)
T ss_pred HHHHHHhcCCCEEEEcCcHH-HHHHH-HcCCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHHHHHHCC
Confidence 34557778999888854322 22122 3345778775531 223455554
Q ss_pred cCCCCcCCCCceEEEEechhh----hchhhHHHHHHhcCCeEEe
Q 020005 206 NMKPLEAGSPLRIGVLAKNAI----LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 206 g~k~~~~~~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~vv~ 245 (332)
|. ++|+++..+.. -...-|++.+++.|++++.
T Consensus 130 g~--------~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~ 165 (281)
T cd06325 130 DA--------KTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVE 165 (281)
T ss_pred CC--------cEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEE
Confidence 44 39999965322 1223467778888987654
No 106
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.61 E-value=2.9 Score=39.11 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
+.+.++.++++|||+|+++|- ......++.+.+++|++.+.
T Consensus 158 ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~~P~~~~g 198 (240)
T cd06556 158 LIADALAYAPAGADLIVMECV-PVELAKQITEALAIPLAGIG 198 (240)
T ss_pred HHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCCCCEEEEe
Confidence 344567899999999999998 45667888889999998874
No 107
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=82.60 E-value=8.1 Score=33.82 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=53.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
+.+||| ||..|-.+.+++..+....- -...+-+.|-...|+ .+.+ .++
T Consensus 3 ~~V~II--MGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe-------------------------~m~~----ya~ 51 (162)
T COG0041 3 PKVGII--MGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPE-------------------------KMFE----YAE 51 (162)
T ss_pred ceEEEE--ecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHH-------------------------HHHH----HHH
Confidence 389999 99999999999988777543 223334445322232 2333 345
Q ss_pred HHHHcCCcEE-EEeCCCchhhHHHHhhhCCCCeeech
Q 020005 160 FLEKAGARCI-VMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 160 ~Le~~Gad~I-vI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
..++.|.++| +.+--.||.- --+...+.+|||++.
T Consensus 52 ~a~~~g~~viIAgAGgAAHLP-GmvAa~T~lPViGVP 87 (162)
T COG0041 52 EAEERGVKVIIAGAGGAAHLP-GMVAAKTPLPVIGVP 87 (162)
T ss_pred HHHHCCCeEEEecCcchhhcc-hhhhhcCCCCeEecc
Confidence 6788999754 4455555543 345566788998874
No 108
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.59 E-value=13 Score=35.58 Aligned_cols=127 Identities=10% Similarity=0.034 Sum_probs=64.6
Q ss_pred HHHHHHHc-CCcEEEEeCCCchhh-HHHHhhhCCCCeeech---------------------------HHHHHHHHHhcC
Q 020005 157 KRVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS---------------------------ECVAKELKEANM 207 (332)
Q Consensus 157 ~~~~Le~~-Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv---------------------------e~t~~~l~~~g~ 207 (332)
.+++|.+. |+.+|+=+..|.... .-.+-+..++|+|+.. ...++.+.+.+
T Consensus 58 ~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~- 136 (347)
T cd06335 58 NAQELAADEKVVAVLGGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRG- 136 (347)
T ss_pred HHHHHhccCCeEEEEcCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhc-
Confidence 34455544 787777666665443 2334444567766521 12223333322
Q ss_pred CCCcCCCCceEEEEechhh---hchhhHHHHHHhcCCeEEecC---ccchhhchHHHHHHHhcCChH-----HHHHHHHH
Q 020005 208 KPLEAGSPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVVLPD---KATMEHTLIPALDALNRKDVE-----GARNLLRI 276 (332)
Q Consensus 208 k~~~~~~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv~P~---~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~ 276 (332)
..+||+++..+.. -....+++.+++.|++++... ....+ +...+..+++...+ ........
T Consensus 137 ------~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d--~s~~i~~i~~~~~d~v~~~~~~~~~~~ 208 (347)
T cd06335 137 ------GFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKD--MTAQLLRAKAAGADAIIIVGNGPEGAQ 208 (347)
T ss_pred ------CCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCcc--HHHHHHHHHhCCCCEEEEEecChHHHH
Confidence 1248999986542 123456777888898875321 11111 23334555543321 11223344
Q ss_pred HHHHHHhCCCCEEEEC
Q 020005 277 ALQVLLVRAVNTVILA 292 (332)
Q Consensus 277 ~~~~L~~~gad~VILG 292 (332)
+++.+.+.|.+.-+++
T Consensus 209 ~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 209 IANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHHHHcCCCCcEec
Confidence 5566777777766665
No 109
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=82.56 E-value=17 Score=35.05 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=47.1
Q ss_pred HHHHHHHcCCcEEEEeCC---------CchhhHHHHhhhCCCCeeec---hHHH-HHHHHHhcCCCCcCCCCceEEEEec
Q 020005 157 KRVFLEKAGARCIVMPCH---------LSHIWHDEVCKGCSVPFLHV---SECV-AKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CN---------TaH~~~d~l~~~~~iPii~I---ve~t-~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
.++.++++|+|.|++-.. .....+.++.+.+++||+-- .+.. +.++...|.. -..+||
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~---------gV~iGt 191 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAE---------AVQMGT 191 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCC---------Eeecch
Confidence 457788999999987332 12234688888889999854 3322 3444446652 445566
Q ss_pred hh-----hhchhhHHHHHHhc
Q 020005 224 NA-----ILTAGFYQEKLQHE 239 (332)
Q Consensus 224 ~~-----T~~s~lY~~~l~~~ 239 (332)
.. .--+..|++.+.+.
T Consensus 192 ~f~~t~Es~~~~~~k~~l~~~ 212 (307)
T TIGR03151 192 RFLCAKECNVHPNYKEKVLKA 212 (307)
T ss_pred HHhcccccCCCHHHHHHHHhC
Confidence 54 33467789888665
No 110
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=82.31 E-value=18 Score=35.16 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=16.8
Q ss_pred ceEEEEechhhh---chhhHHHHHHhcCC
Q 020005 216 LRIGVLAKNAIL---TAGFYQEKLQHEGF 241 (332)
Q Consensus 216 ~rVGlLaT~~T~---~s~lY~~~l~~~Gi 241 (332)
++|+++..+... -...+++.+++.|+
T Consensus 155 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~ 183 (377)
T cd06379 155 NKVILLVSDDHEGRAAQKRFETLLEEREI 183 (377)
T ss_pred eEEEEEEEcCcchhHHHHHHHHHHHhcCC
Confidence 388888775442 22346677777787
No 111
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.23 E-value=38 Score=30.58 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCceEE
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
+.|...++|.|++.-+ ....+..+++ .++|++.+ ...+++++.+.|.+ +|+
T Consensus 44 ~~l~~~~vdGiI~~~~-~~~~~~~l~~-~~~PvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~i~ 113 (265)
T cd01543 44 RWLKDWQGDGIIARID-DPEMAEALQK-LGIPVVDVSGSREKPGIPRVTTDNAAIGRMAAEHFLERGFR--------HFA 113 (265)
T ss_pred hhccccccceEEEECC-CHHHHHHHhh-CCCCEEEEeCccCCCCCCEEeeCHHHHHHHHHHHHHHCCCc--------EEE
Confidence 3455667887776422 1223344433 35555443 23455666666654 999
Q ss_pred EEechhhh----chhhHHHHHHhcCCeEE-ecC-c-c---chhhchHHHH-HHHhcC-ChHH----HHHHHHHHHHHHHh
Q 020005 220 VLAKNAIL----TAGFYQEKLQHEGFEVV-LPD-K-A---TMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 220 lLaT~~T~----~s~lY~~~l~~~Gi~vv-~P~-~-~---~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~~L~~ 283 (332)
+++.+... +..-|++.++++|+++. .+. . . ..+. -...+ +.++.+ +.+. .......+++.+.+
T Consensus 114 ~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 192 (265)
T cd01543 114 FYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEE-EQEELAQWLQSLPKPVGIFACTDARARQLLEACRR 192 (265)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHH-HHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHH
Confidence 99855431 12337778888887652 111 0 0 0000 01112 234332 2211 12233344455555
Q ss_pred CCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 284 RAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 284 ~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
.|. |..|.|+...+....-..+ .+..|+ +...+++.+++...+
T Consensus 193 ~g~~vp~di~vigfd~~~~~~~~~~~-~ltti~~~~~~~g~~a~~~l~~ 240 (265)
T cd01543 193 AGIAVPEEVAVLGVDNDELICELSRP-PLSSVEQNAERIGYEAAKLLDR 240 (265)
T ss_pred hCCCCCCceEEEeeCCchhhhccCCC-CCceeecCHHHHHHHHHHHHHH
Confidence 554 8888998887753322222 123344 234466666655543
No 112
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.19 E-value=15 Score=37.19 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=45.7
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||++-.- .|+++.+.++ .++||++-+|...+.... . +.|||-||.| |-.+.+..+.|+..|.
T Consensus 66 ~~d~vv~spgi~~~~~~~~~a~~-~~i~i~~~~e~~~~~~~~--~--------~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 66 DADVVVYSSAIPDDNPELVAARE-LGIPVVRRAEMLAELMRF--R--------TSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCcEEeHHHHHHHHHcc--C--------cEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 68887765422 3566666654 589999988886554432 1 2799999988 4456677888888775
No 113
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=82.06 E-value=40 Score=30.66 Aligned_cols=153 Identities=13% Similarity=0.070 Sum_probs=78.8
Q ss_pred HHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceEEEE
Q 020005 160 FLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGVL 221 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rVGlL 221 (332)
.|.+..+|.|++.+..... +++.+++ .++|++-+ ...+++++.+. ++ +++++
T Consensus 50 ~l~~~~vdgvi~~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-~~--------~i~~i 119 (269)
T cd06297 50 TTLAYLTDGLLLASYDLTERLAERRLP-TERPVVLVDAENPRFDSFYLDNRLGGRLAGAYLADF-PG--------RIGAI 119 (269)
T ss_pred HHHhcCCCEEEEecCccChHHHHHHhh-cCCCEEEEccCCCCCCEEEECcHHHHHHHHHHHHHh-CC--------ceEEE
Confidence 4667789988887654343 3455544 46776544 22344556655 44 89988
Q ss_pred echhh-----------hchhhHHHHHHhcCCeE----Ee-cCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHH
Q 020005 222 AKNAI-----------LTAGFYQEKLQHEGFEV----VL-PDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQ 279 (332)
Q Consensus 222 aT~~T-----------~~s~lY~~~l~~~Gi~v----v~-P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~ 279 (332)
+.... .+..=|++.++++|+++ +. .+...++ ....+.. ++.+. .+. .......+++
T Consensus 120 ~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 197 (269)
T cd06297 120 TVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLLAITDHSEEG--GRLAMRHLLEKASPPLAVFASADQQALGALQ 197 (269)
T ss_pred eCccccccccccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhh--HHHHHHHHHcCCCCCcEEEEcCcHHHHHHHH
Confidence 64221 11233678888888753 21 1111111 1111222 33322 211 1223334555
Q ss_pred HHHhCCC----CEEEECCCCcccCCCCCCCCCCcee-chHHHHHHHHHHHHHhh
Q 020005 280 VLLVRAV----NTVILASDDMQDLLPPDDPLLKKCI-DPMDALARSTIKWVKSA 328 (332)
Q Consensus 280 ~L~~~ga----d~VILGCTElpli~~~~~~~~ipvI-D~~~~lA~a~v~~a~~~ 328 (332)
.+.+.|. |.-|.|.-..+..... . +..| -+...+++.+++...+.
T Consensus 198 ~l~~~g~~vP~di~vvg~d~~~~~~~~--~--lttv~~~~~~~g~~av~~l~~~ 247 (269)
T cd06297 198 EAVELGLTVGEDVRVVGFDDHPFAREA--G--LSTLAQPVEAMGARAAQLLLER 247 (269)
T ss_pred HHHHcCCCCCCceEEEEECCchhhccC--C--ceeeecCHHHHHHHHHHHHHHH
Confidence 6666664 7778888777755421 1 2333 34566777767666544
No 114
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=81.97 E-value=20 Score=37.57 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=57.5
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHH---HHHHHHhcCCCCcCCCCceEEEEechhhhc-hhhHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV---AKELKEANMKPLEAGSPLRIGVLAKNAILT-AGFYQE 234 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t---~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~-s~lY~~ 234 (332)
+.++..|+|+|+=.-.|+. -|++.+++|||.|--.. .+.++... ..+.||||+|-+.+.. ...+++
T Consensus 58 ~~~~~~~~dviIsrG~ta~----~i~~~~~iPVv~i~~s~~Dil~al~~a~------~~~~~iavv~~~~~~~~~~~~~~ 127 (538)
T PRK15424 58 KRLATERCDAIIAAGSNGA----YLKSRLSVPVILIKPSGFDVMQALARAR------KLTSSIGVVTYQETIPALVAFQK 127 (538)
T ss_pred HHHhhCCCcEEEECchHHH----HHHhhCCCCEEEecCCHhHHHHHHHHHH------hcCCcEEEEecCcccHHHHHHHH
Confidence 5577789999998888865 45777899999872211 12222211 0123899999866643 233444
Q ss_pred HHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 235 KLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 235 ~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
.| ++++..-. +. ..+.....++.++++|+++||-+
T Consensus 128 ~l---~~~i~~~~-------~~-------------~~~e~~~~v~~lk~~G~~~vvG~ 162 (538)
T PRK15424 128 TF---NLRIEQRS-------YV-------------TEEDARGQINELKANGIEAVVGA 162 (538)
T ss_pred Hh---CCceEEEE-------ec-------------CHHHHHHHHHHHHHCCCCEEEcC
Confidence 33 44332100 00 01123344556888899988844
No 115
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=81.54 E-value=16 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=24.1
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
.+|...|+.+|+=|..+.... ...+.+..++|+|+.
T Consensus 56 ~~li~~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~ 92 (324)
T cd06368 56 CDLLSQGVAAIFGPSSSSSANTVQSICDALEIPHITT 92 (324)
T ss_pred HHHHhcCcEEEECCCCHHHHHHHHHHHhccCCCcEEe
Confidence 334447888888777665443 566777778887764
No 116
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=81.18 E-value=3.9 Score=38.79 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
..+.+.++.||++||-.|++=|-. +.....|.+.++||.|+|.
T Consensus 162 ~~l~~~A~ale~AGaf~ivlE~vp-~~la~~It~~l~IPtIGIG 204 (261)
T PF02548_consen 162 EKLLEDAKALEEAGAFAIVLECVP-AELAKAITEALSIPTIGIG 204 (261)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESBB-HHHHHHHHHHSSS-EEEES
T ss_pred HHHHHHHHHHHHcCccEEeeecCH-HHHHHHHHHhCCCCEEecC
Confidence 446677899999999999999986 5666999999999999994
No 117
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.08 E-value=16 Score=37.37 Aligned_cols=74 Identities=12% Similarity=-0.001 Sum_probs=45.7
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+|+..-.- .|+.+...++ .++||++=++...+......+. ...+.|||-||.| |-.+.+....|+..|.
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~-~gi~v~~~iel~~~~~~~~~~~----~~~~vIgITGTnGKTTTt~li~~iL~~~g~ 144 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAA-AGVPIWGDVELAWRLDAAGCYG----PPRRWLVVTGTNGKTTTTSMLHAMLIAAGR 144 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHH-CCCcEeeHHHHhhhhhhhhccC----CCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 56877765432 4566666554 4899999888754443221111 0113799999988 4455667777877665
Q ss_pred eE
Q 020005 242 EV 243 (332)
Q Consensus 242 ~v 243 (332)
..
T Consensus 145 ~~ 146 (488)
T PRK03369 145 RS 146 (488)
T ss_pred ce
Confidence 43
No 118
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=80.89 E-value=18 Score=33.77 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=18.5
Q ss_pred ceEEEEechh-h---hchhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNA-I---LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~-T---~~s~lY~~~l~~~Gi~vv~ 245 (332)
++|+++.... . -....+++.+++.|++++.
T Consensus 136 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 169 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVA 169 (334)
T ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEE
Confidence 4899886432 1 1234566777778887753
No 119
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=80.88 E-value=22 Score=34.50 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV 194 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I 194 (332)
..++.| +.|+.+|+=|..+... ....+.+..+||+|..
T Consensus 54 ~~c~ll-~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~ 92 (382)
T cd06380 54 AICSQL-SRGVFAIFGSYDKSSVNTLTSYSDALHVPFITP 92 (382)
T ss_pred HHHHHH-hcCcEEEEecCcHHHHHHHHHHHhcCCCCeEec
Confidence 344555 4598888877654332 2566777788888854
No 120
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=80.69 E-value=5.3 Score=37.90 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHh----h----hCCCCeeechHHHHHHH
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVC----K----GCSVPFLHVSECVAKEL 202 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~----~----~~~iPii~Ive~t~~~l 202 (332)
.+++...+.....++.+++.|||.||-+|-+-+.-++.-+ + ..++|++|+++-.+.++
T Consensus 202 ~~~~~s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~al 267 (290)
T TIGR03288 202 RDLDVALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLAM 267 (290)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHHc
Confidence 4455555555677788889999999999999888876543 2 24799999998887664
No 121
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=80.61 E-value=41 Score=32.30 Aligned_cols=132 Identities=10% Similarity=0.039 Sum_probs=72.0
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.++||++= |..+-.|+..+.+...+. ....+++.+... ..+.+.. .+
T Consensus 46 t~~Igvv~---p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~-----------------------~~~~~~q----~~ 95 (343)
T PRK10936 46 AWKLCALY---PHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGG-----------------------YYNLAKQ----QQ 95 (343)
T ss_pred CeEEEEEe---cCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCC-----------------------CCCHHHH----HH
Confidence 46888773 334456787777766542 455666544100 0122222 23
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHH-hhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEV-CKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l-~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.+.+.++|.|++.+.....+.+.+ ....++|++.+ ...+++++.+.+.+ .++.
T Consensus 96 ~i~~l~~~~vdgIIl~~~~~~~~~~~l~~~~~giPvV~~~~~~~~~~~~~~V~~D~~~~g~~aa~~L~~~~~~---~~g~ 172 (343)
T PRK10936 96 QLEQCVAWGADAILLGAVTPDGLNPDLELQAANIPVIALVNGIDSPQVTTRVGVSWYQMGYQAGRYLAQWHPK---GSKP 172 (343)
T ss_pred HHHHHHHhCCCEEEEeCCChHHhHHHHHHHHCCCCEEEecCCCCCccceEEEecChHHHHHHHHHHHHHHHHh---cCCC
Confidence 345677889999999876655433333 12457887743 22344555554310 0123
Q ss_pred ceEEEEec-hhh----hchhhHHHHHHhcCCeEE
Q 020005 216 LRIGVLAK-NAI----LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 216 ~rVGlLaT-~~T----~~s~lY~~~l~~~Gi~vv 244 (332)
++|+++.. ... .+..-|++.+++.|++++
T Consensus 173 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~i~~~ 206 (343)
T PRK10936 173 LNVALLPGPEGAGGSKAVEQGFRAAIAGSDVRIV 206 (343)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHhcCCCEEE
Confidence 48998853 322 122336777877788754
No 122
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.47 E-value=30 Score=35.33 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=48.8
Q ss_pred CCcEEEEeCCC--ch----hhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHH
Q 020005 165 GARCIVMPCHL--SH----IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQ 237 (332)
Q Consensus 165 Gad~IvI~CNT--aH----~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~ 237 (332)
++|+||+.-.- .| +.+.+.+ ..++|+++-++...+.+...+.+ .. ..+.|||-||.| |-.+.+....|+
T Consensus 69 ~~d~vv~sp~I~~~~~~~~~~~~~a~-~~~i~v~~~~e~~~~~~~~l~~~-~~--~~~~I~VTGTnGKTTTt~ml~~iL~ 144 (498)
T PRK02006 69 GVDLVALSPGLSPLEAALAPLVAAAR-ERGIPVWGEIELFAQALAALGAS-GY--APKVLAITGTNGKTTTTALTGLLCE 144 (498)
T ss_pred CCCEEEECCCCCCcccccCHHHHHHH-HCCCcEEEHHHHHHHHHhhhccc-cC--CCCEEEEECCCcHHHHHHHHHHHHH
Confidence 78988886322 22 5555554 35899999888876665443211 00 113799999988 445567778888
Q ss_pred hcCCeEE
Q 020005 238 HEGFEVV 244 (332)
Q Consensus 238 ~~Gi~vv 244 (332)
..|..+.
T Consensus 145 ~~g~~~~ 151 (498)
T PRK02006 145 RAGKKVA 151 (498)
T ss_pred HcCCCEE
Confidence 8877654
No 123
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=80.24 E-value=41 Score=29.63 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.+.+.|+|+|++........ ++.+ ...++|++.+ ...+++.+.+.|. +
T Consensus 47 ~~~~~~~~~~d~iii~~~~~~~~~~~~~-~~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~ 117 (264)
T cd06267 47 ALELLLSRRVDGIILAPSRLDDELLEEL-AALGIPVVLVDRPLDGLGVDSVGIDNRAGAYLAVEHLIELGH--------R 117 (264)
T ss_pred HHHHHHHcCcCEEEEecCCcchHHHHHH-HHcCCCEEEecccccCCCCCEEeeccHHHHHHHHHHHHHCCC--------c
Confidence 34557778999888765543333 3333 3346776655 2334455555544 3
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCC
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGF 241 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi 241 (332)
+|+++..... .+..-|++.++++|.
T Consensus 118 ~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~ 147 (264)
T cd06267 118 RIAFIGGPPDLSTARERLEGYREALEEAGI 147 (264)
T ss_pred eEEEecCCCccchHHHHHHHHHHHHHHcCC
Confidence 9999975533 122346677877773
No 124
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=80.22 E-value=38 Score=32.52 Aligned_cols=209 Identities=13% Similarity=0.044 Sum_probs=101.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
..++||++.. .-.-.||..+.+..... ....+++.+. ..+.+.. .
T Consensus 24 ~~~~Ig~i~~---~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~-------------------------~~~~~~~----~ 71 (330)
T PRK10355 24 KEVKIGMAID---DLRLERWQKDRDIFVKKAESLGAKVFVQSA-------------------------NGNEETQ----M 71 (330)
T ss_pred CCceEEEEec---CCCchHHHHHHHHHHHHHHHcCCEEEEECC-------------------------CCCHHHH----H
Confidence 3679999962 22445888888776542 4566666440 1122222 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEA 212 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~ 212 (332)
+.++.|.+.++|.|++.+.... .+++.++ ..++|++-+ ...+++++.+.|.+
T Consensus 72 ~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~-~~~iPvV~id~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~---- 146 (330)
T PRK10355 72 SQIENMINRGVDVLVIIPYNGQVLSNVIKEAK-QEGIKVLAYDRMINNADIDFYISFDNEKVGELQAKALVDKVPQ---- 146 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH-HCCCeEEEECCCCCCCCccEEEecCHHHHHHHHHHHHHHhcCC----
Confidence 3345677889999888764322 3344443 335676644 22344667776654
Q ss_pred CCCceEEE-Ee-chh----hhchhhHHHHHHhc---C-CeEEecC---ccchhhchHHHHHH-Hhc--CChHH----HHH
Q 020005 213 GSPLRIGV-LA-KNA----ILTAGFYQEKLQHE---G-FEVVLPD---KATMEHTLIPALDA-LNR--KDVEG----ARN 272 (332)
Q Consensus 213 ~~~~rVGl-La-T~~----T~~s~lY~~~l~~~---G-i~vv~P~---~~~q~~~l~~~i~~-ik~--g~~~~----a~~ 272 (332)
++++ .+ +.. ..+..-|++.++++ | ++++.+. ....+. ....+++ +.+ ..++. ...
T Consensus 147 ----~i~~i~~g~~~~~~~~~R~~gf~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~lL~~~~~~~~aI~~~nD~ 221 (330)
T PRK10355 147 ----GNYFLMGGSPVDNNAKLFRAGQMKVLKPYIDSGKIKVVGDQWVDGWLPEN-ALKIMENALTANNNKIDAVVASNDA 221 (330)
T ss_pred ----CCEEEEeCCCCCccHHHHHHHHHHHHhhhccCCCeEEecccCCCCCCHHH-HHHHHHHHHHhCCCCccEEEECCCc
Confidence 6554 43 221 12233467777753 4 5543331 111110 1112222 322 11211 111
Q ss_pred HHHHHHHHHHhCCC--CEEEECCCCcccCCC-C-CCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 273 LLRIALQVLLVRAV--NTVILASDDMQDLLP-P-DDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 273 ~l~~~~~~L~~~ga--d~VILGCTElpli~~-~-~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
....+++.+.+.|. |.-|.|.. .+...- . ........|+ +.+.+++.+++...+..+
T Consensus 222 ~A~g~l~al~~~g~~~di~IiGfD-~~~~~~~~l~~gp~ltTV~~~~~~~g~~a~~~L~~~l~ 283 (330)
T PRK10355 222 TAGGAIQALSAQGLSGKVAISGQD-ADLAAIKRIVAGTQTMTVYKPITKLANTAAEIAVELGN 283 (330)
T ss_pred hHHHHHHHHHHCCCCCCceEEccC-CCHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHHHHc
Confidence 22234445555553 78888864 332210 0 0111223444 566788877777665533
No 125
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=80.05 E-value=9.5 Score=36.15 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
+-.+.+.+.++.||++||-.+++=|-- .....+|.+.+++|.|+|.
T Consensus 158 ~~a~~l~~dA~ale~AGaf~ivlE~Vp-~~lA~~IT~~lsiPtIGIG 203 (268)
T COG0413 158 ESAEKLLEDAKALEEAGAFALVLECVP-AELAKEITEKLSIPTIGIG 203 (268)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeccH-HHHHHHHHhcCCCCEEeec
Confidence 445557778899999999999999986 5666999999999999995
No 126
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.70 E-value=47 Score=30.06 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=44.9
Q ss_pred HHHHHHHcCCcEEEEeCCCc---hhhHHHHhhhCCCCeeech-----------------------HHHHHHHHH-hcCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHVS-----------------------ECVAKELKE-ANMKP 209 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa---H~~~d~l~~~~~iPii~Iv-----------------------e~t~~~l~~-~g~k~ 209 (332)
.++.|...++|.|++..-.. ...++.+++ .++|++-+- ..+++++.+ .|.+
T Consensus 49 ~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~- 126 (271)
T cd06312 49 LIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA-AGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAELKGGK- 126 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH-CCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHHhcCCC-
Confidence 44567778999887744222 234455543 356666552 224466666 5543
Q ss_pred CcCCCCceEEEEech-h----hhchhhHHHHHHhcCCeE
Q 020005 210 LEAGSPLRIGVLAKN-A----ILTAGFYQEKLQHEGFEV 243 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~-~----T~~s~lY~~~l~~~Gi~v 243 (332)
+|++++.+ . ..+..-|.+.++.+|++.
T Consensus 127 -------~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~ 158 (271)
T cd06312 127 -------NVLCVIHEPGNVTLEDRCAGFADGLGGAGITE 158 (271)
T ss_pred -------eEEEEecCCCCccHHHHHHHHHHHHHhcCcee
Confidence 89999752 1 112333677788778764
No 127
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=79.51 E-value=53 Score=30.53 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=29.6
Q ss_pred HHHHHHHhCCC--CEEEECCCCcccCCCCCCCCCCc--eechHHHHHHHHHHHHHhhccC
Q 020005 276 IALQVLLVRAV--NTVILASDDMQDLLPPDDPLLKK--CIDPMDALARSTIKWVKSAEKG 331 (332)
Q Consensus 276 ~~~~~L~~~ga--d~VILGCTElpli~~~~~~~~ip--vID~~~~lA~a~v~~a~~~~~~ 331 (332)
.+++.+.+.|. |.-|.|.-..+.......+..+. +.-....+++.+++.+...-+|
T Consensus 199 g~~~al~~~g~~~dv~vvG~D~~~~~~~~~~~g~i~~tv~~~~~~~g~~a~~~l~~~l~g 258 (298)
T cd06302 199 GAARAVEEAGLKGKVAVTGLGLPNQMAPYVKSGAVKEFALWNPADLGYAAVYVAKALLEG 258 (298)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCHHHHHHHhCCeeEEEEecCHHHHHHHHHHHHHHHhcC
Confidence 34455555554 77788887766433222111111 2233466777777776665443
No 128
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=79.40 E-value=24 Score=33.42 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=17.3
Q ss_pred eEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 217 RIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 217 rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
+|+++..+... ....+++.+++.|++++
T Consensus 162 ~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~ 192 (348)
T cd06350 162 WVGLVYSDDDYGRSGLSDLEEELEKNGICIA 192 (348)
T ss_pred EEEEEEecchhHHHHHHHHHHHHHHCCCcEE
Confidence 88888765432 22345566777787765
No 129
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=79.39 E-value=27 Score=33.77 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=42.0
Q ss_pred ceEEEEechhhhc---hhhHHHHHHhcCCeEEecCccc-hhhchHHHHHHHhcCChHH-----HHHHHHHHHHHHHhCCC
Q 020005 216 LRIGVLAKNAILT---AGFYQEKLQHEGFEVVLPDKAT-MEHTLIPALDALNRKDVEG-----ARNLLRIALQVLLVRAV 286 (332)
Q Consensus 216 ~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~P~~~~-q~~~l~~~i~~ik~g~~~~-----a~~~l~~~~~~L~~~ga 286 (332)
+||+++..+...- ...+++.+++.|++++....-. ....+.+.+..+++...+. .-.....+++.+.+.|.
T Consensus 141 ~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G~ 220 (351)
T cd06334 141 KKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVGL 220 (351)
T ss_pred CeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcCC
Confidence 4999999866532 3446778888899887422110 0112333345555433211 11223445556666777
Q ss_pred CEEEECC
Q 020005 287 NTVILAS 293 (332)
Q Consensus 287 d~VILGC 293 (332)
+..++++
T Consensus 221 ~~~~~~~ 227 (351)
T cd06334 221 DDKFIGN 227 (351)
T ss_pred CceEEEe
Confidence 7666654
No 130
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.26 E-value=48 Score=29.87 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=79.4
Q ss_pred HHHHHHHcCCcEEEEe-CCC--ch---hhHHHHhhhCCCCeeech--------------------HHHHHHHHHhcCCCC
Q 020005 157 KRVFLEKAGARCIVMP-CHL--SH---IWHDEVCKGCSVPFLHVS--------------------ECVAKELKEANMKPL 210 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNT--aH---~~~d~l~~~~~iPii~Iv--------------------e~t~~~l~~~g~k~~ 210 (332)
.++.|.+.++|.|++. ++. .+ ..++++.+ .++|++-+- ..+++.+.+.|.+
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~-~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~-- 123 (273)
T cd06292 47 YVEDLLARGVRGVVFISSLHADTHADHSHYERLAE-RGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGHR-- 123 (273)
T ss_pred HHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHh-CCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--
Confidence 3456778899987774 332 22 12455533 356665542 2344556666554
Q ss_pred cCCCCceEEEEechh----h-hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCChHH----HHHHHHH
Q 020005 211 EAGSPLRIGVLAKNA----I-LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKDVEG----ARNLLRI 276 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~----T-~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~~~~----a~~~l~~ 276 (332)
+|++++-.. + .+..-|.+.++++|++. +.......+. -...+.. ++.+ .+. .......
T Consensus 124 ------~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~-~~ai~~~~d~~a~g 195 (273)
T cd06292 124 ------RIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEG-GQAAAVELLGSG-PTAIVAASDLMALG 195 (273)
T ss_pred ------eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHH-HHHHHHHHhcCC-CCEEEEcCcHHHHH
Confidence 899886322 1 12233677888888532 2221111110 0111222 2222 211 1223334
Q ss_pred HHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 277 ALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 277 ~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+++.|.+.| -|.-|.|+-+.++.. ...+. +..|+ +.+.+++.+++.....
T Consensus 196 ~~~~l~~~g~~ip~di~ii~~d~~~~~~-~~~p~-l~tv~~~~~~~g~~a~~~l~~~ 250 (273)
T cd06292 196 AIRAARRRGLRVPEDVSVVGYDDSALMA-FTDPP-LTTVRQPVEEMAAAAVDRLMAR 250 (273)
T ss_pred HHHHHHHcCCCCCcceEEEeeCCchHHH-hcCCC-cceecCCHHHHHHHHHHHHHHH
Confidence 555565555 477888888877432 12222 34444 5667777777766554
No 131
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.17 E-value=52 Score=30.21 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCeE--Ee-cCccchhhchHHHHH-HHhcCC
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEV--VL-PDKATMEHTLIPALD-ALNRKD 266 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v--v~-P~~~~q~~~l~~~i~-~ik~g~ 266 (332)
..+++++.+.|++ +||+++.... -+..-|++.++++|++. +. ......+. -...+. .++...
T Consensus 107 ~~a~~~L~~~G~~--------~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 177 (269)
T cd06287 107 RMLLEHLRAQGAR--------QIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEA-GYAACAQLLAQHP 177 (269)
T ss_pred HHHHHHHHHcCCC--------cEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEecCCCChHH-HHHHHHHHHhCCC
Confidence 3455667777665 9999964321 11233788888888753 21 11111111 111122 233322
Q ss_pred -hHH----HHHHHHHHHHHHHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 267 -VEG----ARNLLRIALQVLLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 267 -~~~----a~~~l~~~~~~L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+. .......+++.+.+.|. |.-|+|+-+-+. ..-..+ .+..|+ +...+++.+++...+.
T Consensus 178 ~~~ai~~~~d~~A~gvl~al~~~gl~vP~dvsvig~~d~~~-~~~~~p-~ltti~~~~~~~g~~A~~~l~~~ 247 (269)
T cd06287 178 DLDALCVPVDAFAVGAVRAATELGRAVPDQLRVVTRYDGLR-ARTSEP-PLTAVDLHLDEVAEQAVDLLFAH 247 (269)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeccCchh-hccCCC-CcccccCCHHHHHHHHHHHHHHH
Confidence 111 12334455566666664 677777555443 221122 223333 5677777777766543
No 132
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=79.10 E-value=28 Score=36.32 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHH---HHHHHhcCCCCcCCCCceEEEEechhhhc-hhhHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA---KELKEANMKPLEAGSPLRIGVLAKNAILT-AGFYQE 234 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~---~~l~~~g~k~~~~~~~~rVGlLaT~~T~~-s~lY~~ 234 (332)
+.+.+.|+|+|+=--.|+. -|++.+++|||.|--..- +.++... ..+.+||++|-+.+.. ...+.+
T Consensus 48 ~~~~~~~~dviIsrG~ta~----~i~~~~~iPVv~i~~s~~Dil~al~~a~------~~~~~ia~vg~~~~~~~~~~~~~ 117 (526)
T TIGR02329 48 QRLGAERCDVVVAGGSNGA----YLKSRLSLPVIVIKPTGFDVMQALARAR------RIASSIGVVTHQDTPPALRRFQA 117 (526)
T ss_pred HHHHhCCCcEEEECchHHH----HHHHhCCCCEEEecCChhhHHHHHHHHH------hcCCcEEEEecCcccHHHHHHHH
Confidence 4577789999998888864 457788999998732211 2222211 0123899999866643 233444
Q ss_pred HH
Q 020005 235 KL 236 (332)
Q Consensus 235 ~l 236 (332)
.|
T Consensus 118 ll 119 (526)
T TIGR02329 118 AF 119 (526)
T ss_pred Hh
Confidence 43
No 133
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.91 E-value=50 Score=29.83 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=77.8
Q ss_pred HHHHHHHcCCcEEEE-eCCCc-hhhHHHHhhhCCCCeeech------------------HHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVM-PCHLS-HIWHDEVCKGCSVPFLHVS------------------ECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI-~CNTa-H~~~d~l~~~~~iPii~Iv------------------e~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++ +|+.. ..+++.+++ .++|++-+- ..+++++.+.|.+
T Consensus 47 ~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~-------- 117 (269)
T cd06281 47 ILRSFEQRRMDGIIIAPGDERDPELVDALAS-LDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHR-------- 117 (269)
T ss_pred HHHHHHHcCCCEEEEecCCCCcHHHHHHHHh-CCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCc--------
Confidence 345577789997775 56432 334555544 356654442 3345566665554
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L 281 (332)
+|+++++... .+..=|.+.++++|+++ +..+..... -.+.++. +++.. .+. .......+++.+
T Consensus 118 ~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l 195 (269)
T cd06281 118 RIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLSTPAAS--GFDATRALLALPDRPTAIIAGGTQVLVGVLRAL 195 (269)
T ss_pred EEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecCcHHHH--HHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHH
Confidence 8999976421 12223677888888754 222211111 1122222 33222 111 122333455666
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
.+.|- |.-|.|+-..+... ...+ .+..|| +...+++.+++...+
T Consensus 196 ~~~g~~ip~dv~iig~d~~~~~~-~~~~-~l~ti~~~~~~~g~~a~~~l~~ 244 (269)
T cd06281 196 REAGLRIPRDLSVISIGDSDLAE-LMDP-PITALRRDREAVGRTAAELMLD 244 (269)
T ss_pred HHcCCCCCcceeEEEecCchHHH-hcCC-ceeEEecCHHHHHHHHHHHHHH
Confidence 66663 56677776554321 1112 134454 344566666665543
No 134
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=78.43 E-value=49 Score=29.52 Aligned_cols=160 Identities=15% Similarity=0.184 Sum_probs=79.9
Q ss_pred HHHHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++ +++..-..++.+. ..++|++-+ ...+++++.+.|.+
T Consensus 47 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~-------- 117 (268)
T cd01575 47 LLRTLLSRRPAGLILTGLEHTERTRQLLR-AAGIPVVEIMDLPPDPIDMAVGFSHAEAGRAMARHLLARGYR-------- 117 (268)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHH-hcCCCEEEEecCCCCCCCCeEEeCcHHHHHHHHHHHHHCCCC--------
Confidence 345677889998766 4442213334443 336676643 22344556655544
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCe--E--EecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFE--V--VLPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~--v--v~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L 281 (332)
+|++++.... .+..-|++.++++|+. . +.+.....+. ....+.. +++. +.+. .......+++.+
T Consensus 118 ~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l 196 (268)
T cd01575 118 RIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFAL-GRELLAELLARWPDLDAVFCSNDDLALGALFEC 196 (268)
T ss_pred cEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHH
Confidence 8999986543 2233477888888753 1 1122111110 1111222 3322 2111 122233445555
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|..|+|+-..+... ...+ .+..|+ +.+.+++.+++.....
T Consensus 197 ~~~g~~~p~di~vig~d~~~~~~-~~~~-~itti~~~~~~~g~~a~~~l~~~ 246 (268)
T cd01575 197 QRRGISVPEDIAIAGFGDLEIAA-ALPP-ALTTVRTPRREIGRRAAELLLAR 246 (268)
T ss_pred HHhCCCCCcceEEEecCCchhhh-ccCC-CceeeeCCHHHHHHHHHHHHHHH
Confidence 5555 377788888877542 2122 234454 4556777766666543
No 135
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.22 E-value=52 Score=29.68 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=44.6
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeech------------------HHHHHHHHHh--cCCCCcCCC
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS------------------ECVAKELKEA--NMKPLEAGS 214 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~Iv------------------e~t~~~l~~~--g~k~~~~~~ 214 (332)
++.+.+.++|.|++...... ..++++++ .++|++.+- ..+++++.+. |.
T Consensus 50 i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~-~~ipvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~------- 121 (271)
T cd06321 50 IDNFIAAKVDLILLNAVDSKGIAPAVKRAQA-AGIVVVAVDVAAEGADATVTTDNVQAGEISCQYLADRLGGK------- 121 (271)
T ss_pred HHHHHHhCCCEEEEeCCChhHhHHHHHHHHH-CCCeEEEecCCCCCccceeeechHHHHHHHHHHHHHHhCCC-------
Confidence 44567789998887443222 23444433 467776652 3344556665 44
Q ss_pred CceEEEEechh----hhchhhHHHHHHhc-CCeE
Q 020005 215 PLRIGVLAKNA----ILTAGFYQEKLQHE-GFEV 243 (332)
Q Consensus 215 ~~rVGlLaT~~----T~~s~lY~~~l~~~-Gi~v 243 (332)
++|++++.+. ..+..-|.+.++++ +++.
T Consensus 122 -~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~ 154 (271)
T cd06321 122 -GNVAILNGPPVSAVLDRVAGCKAALAKYPGIKL 154 (271)
T ss_pred -ceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Confidence 3999996532 22223367788887 6753
No 136
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=77.82 E-value=64 Score=30.48 Aligned_cols=37 Identities=5% Similarity=-0.074 Sum_probs=19.0
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 158 RVFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 158 ~~~Le-~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
+++|. +.|+.+|+=+..+.... .-.+-+..++|+|+.
T Consensus 58 a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 58 ADELVKDPEILGVVGHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred HHHHhcccCceEEEcCCCcHHHHHHHHHHhhcCceEEcc
Confidence 34444 34676666555443332 233445567777664
No 137
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=77.73 E-value=53 Score=29.54 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=80.3
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++..+..... ++.+.+ .++|++-+ ...+++.+.+.|.+
T Consensus 47 ~i~~~~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~-------- 117 (268)
T cd06270 47 AIEFLLERRCDALILHSKALSDDELIELAA-QVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGHR-------- 117 (268)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHhh-CCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCCc--------
Confidence 34567778999888765443332 455543 35665544 22344556665543
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L 281 (332)
+|++++.... .+..-|++.++++|+++ +.......+. ....++. ++.+ +.+. .......+++.+
T Consensus 118 ~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l 196 (268)
T cd06270 118 KIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEG-GYAAMQELLARGAPFTAVFCANDEMAAGAISAL 196 (268)
T ss_pred eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence 8999865321 22333778888887643 2222211111 1111222 3332 1211 122334455556
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|.-|.|+-..+... ...+ .+..|+ +...+++.++++..+.
T Consensus 197 ~~~g~~ip~di~v~g~d~~~~~~-~~~~-~~~ti~~~~~~~g~~a~~~l~~~ 246 (268)
T cd06270 197 REHGISVPQDVSIIGFDDVLLAR-YLYP-KLTTVHYPIEEMAQMAAKLALQL 246 (268)
T ss_pred HHcCCCCCCceeEEEecCchHhh-hcCC-CceEeecCHHHHHHHHHHHHHHH
Confidence 5555 366677777665432 1122 134454 4456777777766554
No 138
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.44 E-value=54 Score=29.41 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.|.+.++|.+++. |......+..+++ ++|++-+ ...+++++.+.|.+
T Consensus 46 ~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~--~iPvV~i~~~~~~~~~~~V~~d~~~a~~~~~~~l~~~g~~------- 116 (265)
T cd06290 46 EALELLKSRRVDALILLGGDLPEEEILALAE--EIPVLAVGRRVPGPGAASIAVDNFQGGYLATQHLIDLGHR------- 116 (265)
T ss_pred HHHHHHHHCCCCEEEEeCCCCChHHHHHHhc--CCCEEEECCCcCCCCCCEEEECcHHHHHHHHHHHHHCCCC-------
Confidence 34456888999987765 4433333444433 5676643 23344556666554
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeEE----ecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~ 280 (332)
+|++++.... -+..-|.+.+.+.|+++. ......++. -...++ .++++. ++. .......+++.
T Consensus 117 -~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~aii~~~~~~a~~~~~~ 194 (265)
T cd06290 117 -RIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDFEEES-GLEAVEELLQRGPDFTAIFAANDQTAYGARLA 194 (265)
T ss_pred -eEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecCCCHHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHH
Confidence 8999965321 112236777887776532 222211211 111222 233322 111 12223344555
Q ss_pred HHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.|. |.-|.|+...+...- ..+ .+..|+ ....+++.+++.....
T Consensus 195 l~~~g~~ip~di~vi~~d~~~~~~~-~~p-~ltti~~~~~~~g~~a~~~l~~~ 245 (265)
T cd06290 195 LYRRGLRVPEDVSLIGFDDLPLSAY-TTP-PLTTVRQPIEEMGQIAARALLAL 245 (265)
T ss_pred HHHcCCCCCcceEEeeecCchHHhh-cCC-CCceecCchHHHHHHHHHHHHHH
Confidence 666553 667788776664321 111 123444 3566777777665443
No 139
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=77.39 E-value=30 Score=32.62 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 161 LEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
|.+.|+.+|+=|.++.... ...+.+..++|+|+.
T Consensus 59 li~~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~ 93 (327)
T cd06382 59 LLQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQT 93 (327)
T ss_pred hhhcCcEEEECCCChhHHHHHHHHHhccCCCceec
Confidence 3344899888887776544 466777778888763
No 140
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=77.29 E-value=7.6 Score=37.79 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech--HHHHHHHHHhcCCCCcCCCCceEEEEech-
Q 020005 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS--ECVAKELKEANMKPLEAGSPLRIGVLAKN- 224 (332)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv--e~t~~~l~~~g~k~~~~~~~~rVGlLaT~- 224 (332)
+.|...+. ++.|+.+|+|-|+- ...-.++++..+++|+-|+- ...++++++.+ . .. ..-|++-+
T Consensus 106 epIsaklv--A~lL~~aG~drv~T----vDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~-~----~~--d~vVVSPD~ 172 (314)
T COG0462 106 EPISAKLV--ANLLETAGADRVLT----VDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY-D----LD--DPVVVSPDK 172 (314)
T ss_pred CCEeHHHH--HHHHHHcCCCeEEE----EcCCchhhcccCCCccccccchHHHHHHHHHhc-C----CC--CcEEECCCc
Confidence 44555443 57899999998763 34445789999999998884 33444555542 1 11 24555542
Q ss_pred -hhhchhhHHHHHHhcCCeEEe----cCccchhhchHHHHHHHhcCC------hHHHHHHHHHHHHHHHhCCCCEEEECC
Q 020005 225 -AILTAGFYQEKLQHEGFEVVL----PDKATMEHTLIPALDALNRKD------VEGARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 225 -~T~~s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~~ik~g~------~~~a~~~l~~~~~~L~~~gad~VILGC 293 (332)
+.-+.+.+.+.|... +..+. |+...- .++..+-+++..+ +-..-..+.++.+.|+++||--|+..|
T Consensus 173 Ggv~RAr~~A~~L~~~-~a~i~K~R~~~~~~v--~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~ 249 (314)
T COG0462 173 GGVKRARALADRLGAP-LAIIDKRRDSSPNVV--EVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAA 249 (314)
T ss_pred cHHHHHHHHHHHhCCC-EEEEEEeecCCCCeE--EEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEE
Confidence 334455555555422 32222 111111 1222234444322 112346778888999999999999999
Q ss_pred CCcccCCC------C--C------C--CC-------CCceechHHHHHHHHHHHH
Q 020005 294 DDMQDLLP------P--D------D--PL-------LKKCIDPMDALARSTIKWV 325 (332)
Q Consensus 294 TElpli~~------~--~------~--~~-------~ipvID~~~~lA~a~v~~a 325 (332)
||=-+.-+ . . + +. .+..||-...+|+++.+..
T Consensus 250 tH~vfs~~a~~~l~~~~i~~vivTnTi~~~~~~~~~~~~~isva~liaeaI~ri~ 304 (314)
T COG0462 250 THGVFSGAALERLEASAIDEVIVTDTIPLPEKKKIPKVSVISVAPLIAEAIRRIH 304 (314)
T ss_pred EchhhChHHHHHHhcCCCCEEEEeCCcccccccccCceEEEEhHHHHHHHHHHHH
Confidence 99443210 0 0 0 11 2467899999999887654
No 141
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=76.05 E-value=24 Score=32.64 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=56.7
Q ss_pred HHHHHcCCcEEEEe-CCCchhhHHHHhhhC-----CCCeeechHHHHHHHHHhcCCCCcCCC-----------------C
Q 020005 159 VFLEKAGARCIVMP-CHLSHIWHDEVCKGC-----SVPFLHVSECVAKELKEANMKPLEAGS-----------------P 215 (332)
Q Consensus 159 ~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~-----~iPii~Ive~t~~~l~~~g~k~~~~~~-----------------~ 215 (332)
+.|.. .|.|+.. -|+.+.|++.+...- +.++.-+.+.|++.+++.|+++--.+. .
T Consensus 46 ~~l~~--~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~ 123 (248)
T COG1587 46 EDLDS--ADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGG 123 (248)
T ss_pred hcccc--CCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCC
Confidence 34444 6766665 677777888877664 589999999999999998876322222 2
Q ss_pred ceEEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
++|.++...+.. .+..+.|...|+++..
T Consensus 124 ~~vl~~~~~~~r--~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 124 KRVLILRGNGGR--EVLEEKLEERGAEVRE 151 (248)
T ss_pred CeEEEEcCCCch--HHHHHHHHhCCCEEEE
Confidence 467777665554 4667777777777643
No 142
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.64 E-value=59 Score=28.97 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=77.1
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.+.+.++|.|++. |......++.+.+ .++|++.+ +..+++++.+.|.+ +
T Consensus 47 i~~~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~ 117 (266)
T cd06278 47 LRQLLQYRVDGVIVTSGTLSSELAEECRR-NGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGCR--------R 117 (266)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHhh-cCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHCCCc--------e
Confidence 345677899988874 4332233455544 36777665 23444556665543 9
Q ss_pred EEEEechhhh-----chhhHHHHHHhcCCeEEe---cCccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHHHHHHh
Q 020005 218 IGVLAKNAIL-----TAGFYQEKLQHEGFEVVL---PDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 218 VGlLaT~~T~-----~s~lY~~~l~~~Gi~vv~---P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~~L~~ 283 (332)
|++++.+... +..-|.+.+++.|+++.. .... .+. ....+ +.++++ +.+. .......+++.|.+
T Consensus 118 i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~l~~ 195 (266)
T cd06278 118 IAFIGGPADTSTSRERERGFRDALAAAGVPVVVEEAGDYS-YEG-GYEAARRLLASRPRPDAIFCANDLLAIGVMDAARQ 195 (266)
T ss_pred EEEEcCCCcccchHHHHHHHHHHHHHcCCChhhhccCCCC-HHH-HHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 9999753221 223367778888876421 1111 111 11112 223332 1111 11222334455554
Q ss_pred C-C----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 284 R-A----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 284 ~-g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
. + -|..|+|.-..+..... .+ .+..|+ +.+.+++.+++...+.
T Consensus 196 ~~~~~~p~di~i~~~d~~~~~~~~-~~-~~~ti~~~~~~~g~~a~~~l~~~ 244 (266)
T cd06278 196 EGGLRVPEDVSVIGFDDIPMAAWP-SY-QLTTVRQPVDRMAEEAVDLLEAR 244 (266)
T ss_pred hcCCCCccceEEEEeCChhHhhcc-CC-CceEEeCcHHHHHHHHHHHHHHH
Confidence 3 2 36677777665543211 11 123344 3555777777665543
No 143
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.56 E-value=58 Score=33.19 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=45.0
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||..--- .|+.+...+ ..++||++=++.......+... ...+.|||-||.| |-.+.+..+.|+..|.
T Consensus 69 ~~d~vV~SpgI~~~~p~~~~a~-~~~i~i~~~~el~~~~~~~~~~-----~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 69 AFDVVVKSPGISPYRPEALAAA-ARGTPFIGGTALWFAEHAARDG-----VVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCEEEECCCCCCCCHHHHHHH-HcCCcEEEHHHHHHHHHhhccC-----CCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 57888775532 456655554 3589999966653333221100 0012799999987 4455667777777765
Q ss_pred eEEe
Q 020005 242 EVVL 245 (332)
Q Consensus 242 ~vv~ 245 (332)
.+..
T Consensus 143 ~~~~ 146 (468)
T PRK04690 143 RTAL 146 (468)
T ss_pred cEEE
Confidence 4433
No 144
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=75.53 E-value=6 Score=38.78 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCeee
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLH 193 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~ 193 (332)
-++.|+++|||.+=++|++.-.. +.+|++++++|++.
T Consensus 41 QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 41 QIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 35679999999999999997765 79999999999863
No 145
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.43 E-value=14 Score=35.66 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=83.9
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEec--hhhhchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAK--NAILTAGFY 232 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT--~~T~~s~lY 232 (332)
.++.|+.+|+|.++.-- .| .+.++..+++|+-++ ....++.+++.+.+ ...|+|. .+......+
T Consensus 109 ~a~lL~~~g~d~vitvD--~H--~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~--------~~vvv~pd~Gg~~~A~~l 176 (309)
T PRK01259 109 VANLLETAGADRVLTMD--LH--ADQIQGFFDIPVDNLYGSPILLEDIKQKNLE--------NLVVVSPDVGGVVRARAL 176 (309)
T ss_pred HHHHHhhcCCCEEEEEc--CC--hHHHcCcCCCCceeeeecHHHHHHHHhcCCC--------CcEEEEECCCcHHHHHHH
Confidence 45778889999876532 35 367777777776554 56677777765543 3445554 233333333
Q ss_pred HHHHHhcCCeEEecCccchh-h--chHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccC----
Q 020005 233 QEKLQHEGFEVVLPDKATME-H--TLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDL---- 299 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~~~q~-~--~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli---- 299 (332)
.+.| |+....-+..... . ........++.... + ..-..+..+++.|++.|+..|.+.|||--+.
T Consensus 177 a~~L---g~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~ 253 (309)
T PRK01259 177 AKRL---DADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAI 253 (309)
T ss_pred HHHh---CCCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHHH
Confidence 3333 5544332221111 0 00001122332111 2 2456688888999999999999999973221
Q ss_pred ---CCC-C------CC----------CCCceechHHHHHHHHHH
Q 020005 300 ---LPP-D------DP----------LLKKCIDPMDALARSTIK 323 (332)
Q Consensus 300 ---~~~-~------~~----------~~ipvID~~~~lA~a~v~ 323 (332)
... . +. ..+.++|-...+|+++.+
T Consensus 254 ~~l~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~ 297 (309)
T PRK01259 254 ERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRR 297 (309)
T ss_pred HHHhcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHH
Confidence 110 0 00 123478989989888754
No 146
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=75.35 E-value=13 Score=34.70 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=54.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCC-CCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEEND-FPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~-~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
.|+-|-.||-......++.++|.....+.+. .+++|.-..+ -+.. .....++.+ +.+
T Consensus 109 ~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTD-----------a~~~-------~~~~~~eai----~Ra 166 (243)
T cd00377 109 PKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTD-----------ALLA-------GEEGLDEAI----ERA 166 (243)
T ss_pred CccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcC-----------chhc-------cCCCHHHHH----HHH
Confidence 4557777888888999999999877765422 5565544111 1100 011233333 345
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL 192 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii 192 (332)
+...++|||++.+++-+.-..+.++.+..+.|++
T Consensus 167 ~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~ 200 (243)
T cd00377 167 KAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLN 200 (243)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEE
Confidence 5678999999999987633344555555555543
No 147
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.04 E-value=24 Score=38.60 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.--- .|+.+...+ ..++|+++=+|...+..+. . +.|||-||.| |-.+.+....|+..|.
T Consensus 63 ~~d~vV~SpgI~~~~p~~~~a~-~~gi~v~~~~el~~~~~~~--~--------~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 63 EDAVVVYSSSISKDNVEYLSAK-SRGNRLVHRAELLAELMQE--Q--------ISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCEEEECCCcCCCCHHHHHHH-HCCCcEEeHHHHHHHHHcC--C--------CEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 68888854321 356665554 3589999998886554331 1 2799999988 4445677778887775
Q ss_pred e
Q 020005 242 E 242 (332)
Q Consensus 242 ~ 242 (332)
.
T Consensus 132 ~ 132 (809)
T PRK14573 132 D 132 (809)
T ss_pred C
Confidence 3
No 148
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=74.73 E-value=23 Score=32.96 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=22.2
Q ss_pred hhhccCeEEEEeCCChHHHHHHHHHHHHHhc
Q 020005 76 LLNQANTVGIVGGASVDSTLNLLGKLVQLSG 106 (332)
Q Consensus 76 ~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~ 106 (332)
+|+...+||+|||+-......|..-..+...
T Consensus 116 ~~t~t~kVG~I~g~~~~~~~~~~~gF~~G~~ 146 (258)
T cd06353 116 KMTKTNKVGYVAAFPIPEVVRGINAFALGAR 146 (258)
T ss_pred HhhcCCcEEEEcCcccHHHHHHHHHHHHHHH
Confidence 4556789999999977776677655555443
No 149
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.68 E-value=30 Score=35.21 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCcEEEEeCC--CchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CN--TaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.-- -.|+.+.+.++ .++|+++=+|...+... .. +.|||-||.| |-.+.+....|+..|.
T Consensus 63 ~~d~vV~SPgI~~~~p~~~~a~~-~gi~v~~e~el~~~~~~--~~--------~~IaVTGTnGKTTTt~ll~~iL~~~g~ 131 (454)
T PRK01368 63 NLDKIVLSPGIPLTHEIVKIAKN-FNIPITSDIDLLFEKSK--NL--------KFIAITGTNGKSTTTALISHILNSNGL 131 (454)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCceecHHHHHHHHhc--CC--------CEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 6888776442 23666666654 48999997766544321 11 2799999988 4455677788887776
Q ss_pred eEEe
Q 020005 242 EVVL 245 (332)
Q Consensus 242 ~vv~ 245 (332)
.+..
T Consensus 132 ~~~~ 135 (454)
T PRK01368 132 DYPV 135 (454)
T ss_pred CeEE
Confidence 6543
No 150
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=74.53 E-value=78 Score=29.88 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=19.1
Q ss_pred ceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
++|++++-+... ....+++.+++.|++++.
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~ 165 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVG 165 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEee
Confidence 388888754321 234567778888888753
No 151
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=74.34 E-value=15 Score=35.85 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=84.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeee--chHHHHHHHHHhcCCCCcCCCCceEEEEechh--hhchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH--VSECVAKELKEANMKPLEAGSPLRIGVLAKNA--ILTAGFY 232 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~--Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~--T~~s~lY 232 (332)
.++.|+.+|+|.++.- -.| -++++..+++|+.+ .....++++++.++. ....-|++... ......+
T Consensus 114 ~a~ll~~~g~d~vit~--D~H--~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~------~~~~vvVsPd~G~~~~A~~l 183 (320)
T PRK02269 114 VANMLEVAGVDRLLTV--DLH--AAQIQGFFDIPVDHLMGAPLIADYFDRRGLV------GDDVVVVSPDHGGVTRARKL 183 (320)
T ss_pred HHHHHhhcCCCEEEEE--CCC--hHHHhccccCCchhhhhHHHHHHHHHHhCCC------CCCcEEEEECccHHHHHHHH
Confidence 4577888999977642 235 36788888889854 444555666665431 01344555422 2222323
Q ss_pred HHHHHhcCCeEEecCccch----h-hchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCCC
Q 020005 233 QEKLQHEGFEVVLPDKATM----E-HTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLLP 301 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~~~q----~-~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~~ 301 (332)
.+. .|+.+..-+.... . .........++..+. + ..-..+.++++.|++.||..|...|||-=+--+
T Consensus 184 A~~---lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~ 260 (320)
T PRK02269 184 AQF---LKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGP 260 (320)
T ss_pred HHH---hCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCch
Confidence 333 3554433211100 0 001111122332111 2 245678899999999999999999999332211
Q ss_pred -------C-C------CC---------CCCceechHHHHHHHHHHH
Q 020005 302 -------P-D------DP---------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 302 -------~-~------~~---------~~ipvID~~~~lA~a~v~~ 324 (332)
. . +. ..+.+||-...+|+++.+.
T Consensus 261 a~~~l~~~~i~~iv~Tdti~~~~~~~~~k~~~isva~~la~~i~~~ 306 (320)
T PRK02269 261 ALDNIQKSAIEKLVVLDTIYLPEERLIDKIEQISIADLLGEAIIRI 306 (320)
T ss_pred HHHHHHhCCCCEEEEeCCCCCccccccCCeEEEEhHHHHHHHHHHH
Confidence 0 0 11 1245799999999887554
No 152
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=74.31 E-value=15 Score=37.40 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=87.9
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCC--CCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEechhh--hchh
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCS--VPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAKNAI--LTAG 230 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~--iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T--~~s~ 230 (332)
.++.|+.+|+|.++.-- .| .++++..++ +|+.++ ....++.++..... ..-+++-+.. -+..
T Consensus 228 vA~lL~~~G~d~VitvD--lH--s~~i~~fF~~~iPvdnl~a~~~~a~~i~~~~l~--------~pVVVsPD~Ga~~RAr 295 (439)
T PTZ00145 228 VARMIEAMGVDRVVAID--LH--SGQIQGFFGPRVPVDNLEAQLIGLDYFTKKDLY--------KPVIVSPDAGGVYRAR 295 (439)
T ss_pred HHHHHHHcCCCeEEEEe--cC--hHHHHhhcCCCcccccccccHHHHHHHhhcCCC--------ccEEEccCcchHHHHH
Confidence 46788899999876532 35 356777775 887776 33445555443222 5667777632 3445
Q ss_pred hHHHHHHhc-----CCeEEec--CccchhhchHHHHHHHhcCC------hHHHHHHHHHHHHHHHhCCCCEEEECCCCcc
Q 020005 231 FYQEKLQHE-----GFEVVLP--DKATMEHTLIPALDALNRKD------VEGARNLLRIALQVLLVRAVNTVILASDDMQ 297 (332)
Q Consensus 231 lY~~~l~~~-----Gi~vv~P--~~~~q~~~l~~~i~~ik~g~------~~~a~~~l~~~~~~L~~~gad~VILGCTElp 297 (332)
.|++.|... ++.++.- ..+.+.. .+..+.+++..+ +-..-..+.++++.|++.||..|...|||--
T Consensus 296 ~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THgl 374 (439)
T PTZ00145 296 KFQDGLNHRGISDCGIAMLIKQRTKPNEIE-KMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGL 374 (439)
T ss_pred HHHHHhccccccCCCEEEEEeecCCCCceE-EEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEccc
Confidence 578777642 2333321 0111111 111122333211 1124567888999999999999999999954
Q ss_pred cCCC-------C-C------CC----------CCCceechHHHHHHHHHHH
Q 020005 298 DLLP-------P-D------DP----------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 298 li~~-------~-~------~~----------~~ipvID~~~~lA~a~v~~ 324 (332)
+.-+ . . +. ..+.+||-...+|+++.+.
T Consensus 375 fs~~A~~rl~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~llAeaI~~i 425 (439)
T PTZ00145 375 FSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRI 425 (439)
T ss_pred CChhHHHHHhcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 3211 0 0 11 1245799999999887553
No 153
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=74.23 E-value=57 Score=28.18 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec-----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I-----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
++.+.+.++|+++++-...-.. .-......++|+|.+ .+..++.+.+.+.+
T Consensus 51 ~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 125 (269)
T cd01391 51 LRDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLAEKGWK----- 125 (269)
T ss_pred HHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHHHhCCc-----
Confidence 3456666888777654332221 222233446666554 34455666666544
Q ss_pred CCceEEEEechhh----hchhhHHHHHHhcCCeEE
Q 020005 214 SPLRIGVLAKNAI----LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~vv 244 (332)
+|++++.+.. .....|++.+++.|++++
T Consensus 126 ---~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
T cd01391 126 ---RVALIYGDDGAYGRERLEGFKAALKKAGIEVV 157 (269)
T ss_pred ---eEEEEecCCcchhhHHHHHHHHHHHhcCcEEE
Confidence 9999987662 223456777887776654
No 154
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.13 E-value=29 Score=31.44 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeech----HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS----ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+++.|+|.+.|.--++. .++.++.+.+++|+.-=. .+-++.+.+.|.+ +| +++|
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad--------~v-vigs 103 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVS--------RV-IIGT 103 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC--------EE-EECc
Confidence 4456788899998888722211 236778888888976422 1334555566653 44 6777
Q ss_pred hhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 224 NAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
..--...++++..++.|-+-+.++-+.....+. ..|..+.......+.++.+.+.|++.+++-
T Consensus 104 ~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 104 AAVKNPELVKELLKEYGGERIVVGLDAKDGKVA------TKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred hHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE------ECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 655556678888888776332222221111110 011111111122345566777899988774
No 155
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=73.71 E-value=29 Score=32.93 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH 177 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH 177 (332)
.+.++.|+++|+|+|.+ .||.+
T Consensus 172 ~~~a~~l~~~G~d~i~v-~nt~~ 193 (300)
T TIGR01037 172 TEIAKAAEEAGADGLTL-INTLR 193 (300)
T ss_pred HHHHHHHHHcCCCEEEE-EccCC
Confidence 44567899999999987 34444
No 156
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=73.06 E-value=76 Score=29.04 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=55.5
Q ss_pred ceEEEEechhh----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 216 ~rVGlLaT~~T----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
++|++|+.... .+..-|++.++++ |+++.. ......+. -...+.. ++.+. ++. .......+++.+.
T Consensus 132 ~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~l~al~ 210 (280)
T cd06303 132 ARYAMLYFSPGYISTARGDTFIDCVHARNNWTLTSEFYTDATRQK-AYQATSDILSNNPDVDFIYACSTDIALGASDALK 210 (280)
T ss_pred cEEEEEECCCCcchhHHHHHHHHHHHhCCCceEEEeecCCCCHHH-HHHHHHHHHHhCCCCcEEEECCcHHHHHHHHHHH
Confidence 39999965321 1223477888888 776432 22211111 1112222 33322 211 1222334555666
Q ss_pred hCCC--CEEEECCCCcccCCCCC-CC-CCCceechHHHHHHHHHHHHHhhcc
Q 020005 283 VRAV--NTVILASDDMQDLLPPD-DP-LLKKCIDPMDALARSTIKWVKSAEK 330 (332)
Q Consensus 283 ~~ga--d~VILGCTElpli~~~~-~~-~~ipvID~~~~lA~a~v~~a~~~~~ 330 (332)
+.|. |..|.|.-..|..+... ++ ....+..+...+++.+++.+....+
T Consensus 211 ~~G~~~dv~vvg~d~~~~~~~~~~~g~~~~tv~~~~~~~g~~~~~~~~~~~~ 262 (280)
T cd06303 211 ELGREDDILINGWGGGSAELDAIQQGELDVTVMRMNDDTGVAMAEAIKLDLE 262 (280)
T ss_pred HcCCCCCcEEEecCCCHHHHHHHHcCCceEEEecCchHhHHHHHHHHHHHhc
Confidence 6664 67888888766533221 11 1112343457777777777665543
No 157
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.86 E-value=45 Score=33.74 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=44.5
Q ss_pred cCCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|+++++..- .|+++...+ ..++|+++=.+......... . ..+.|||-||.| |-.+.+....|+..|
T Consensus 77 ~~~D~Vv~s~Gi~~~~~~~~~a~-~~gi~v~~~~e~~~~~~~~~-~------~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 77 EDTDLVVTSPGWRPDAPLLAAAA-DAGIPVWGEVELAWRLRDPD-R------PAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCCCEEEECCCcCCCCHHHHHHH-HCCCeecchHHHHHHhhhcc-C------CCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 357888876643 344444443 45899988666543322111 0 112699999988 445567777887777
Q ss_pred CeEEe
Q 020005 241 FEVVL 245 (332)
Q Consensus 241 i~vv~ 245 (332)
..+..
T Consensus 149 ~~~~~ 153 (480)
T PRK01438 149 LRAAA 153 (480)
T ss_pred CCeEE
Confidence 65543
No 158
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=72.78 E-value=17 Score=35.04 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEechh--hhchhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAKNA--ILTAGF 231 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~--T~~s~l 231 (332)
-.++.|+.+|+|-++.-- .| -++++..+++|+.++ .+..++++.+. .+ . ...-+++... ......
T Consensus 97 ~va~lL~~~g~d~vitvD--~H--~~~~~~~f~~p~~~l~~~~~la~~i~~~-~~----~--~~~vvVspd~Ga~~~a~~ 165 (304)
T PRK03092 97 LVADLFKTAGADRIMTVD--LH--TAQIQGFFDGPVDHLFAMPLLADYVRDK-YD----L--DNVTVVSPDAGRVRVAEQ 165 (304)
T ss_pred HHHHHHHhcCCCeEEEEe--cC--hHHHHhhcCCCeeeEechHHHHHHHHHh-cC----C--CCcEEEEecCchHHHHHH
Confidence 346788899999876532 35 377888888988554 55566777543 11 1 1345555432 233444
Q ss_pred HHHHHHhcCCeEEecCccc---hhhchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCC--
Q 020005 232 YQEKLQHEGFEVVLPDKAT---MEHTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLL-- 300 (332)
Q Consensus 232 Y~~~l~~~Gi~vv~P~~~~---q~~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~-- 300 (332)
+.+.|....+.++...... ...........++.... + ..-..+..+++.|++.|+..|.+.|||-=+.-
T Consensus 166 la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a 245 (304)
T PRK03092 166 WADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPA 245 (304)
T ss_pred HHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHH
Confidence 5555542223333221110 00001011112332111 2 23466788889999999999999999743211
Q ss_pred -----CC-C------C---------CCCCceechHHHHHHHHHHH
Q 020005 301 -----PP-D------D---------PLLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 301 -----~~-~------~---------~~~ipvID~~~~lA~a~v~~ 324 (332)
+. . + ...+.++|-...+|+++.+.
T Consensus 246 ~~~l~~~~~~~i~~t~tip~~~~~~~~~~~~~sva~~la~~i~~~ 290 (304)
T PRK03092 246 AERLKNCGAREVVVTDTLPIPEEKRFDKLTVLSIAPLLARAIREV 290 (304)
T ss_pred HHHHHHCCCCEEEEeeeeccchhhcCCCeEEEEhHHHHHHHHHHH
Confidence 00 0 0 01246789999998887544
No 159
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=72.36 E-value=75 Score=28.72 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=26.9
Q ss_pred HHHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCcee-chHHHHHHHHHHHHHhh
Q 020005 277 ALQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCI-DPMDALARSTIKWVKSA 328 (332)
Q Consensus 277 ~~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvI-D~~~~lA~a~v~~a~~~ 328 (332)
+++.+.+.|. |.-|.|.-..+...... .......| -+...+++.+++.....
T Consensus 194 ~~~al~~~g~~~di~vig~d~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~ 249 (271)
T cd06314 194 IAEAVKAAGKLGKVKIVGFDEDPDTLQGVKEGTIQGTVVQRPYQMGYLSVTVLAAL 249 (271)
T ss_pred HHHHHHHcCCCCceEEEEeCCCHHHHHHHHcCcceEEEecCHHHHHHHHHHHHHHH
Confidence 3445555553 67778877776542111 11112223 34566777777766543
No 160
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=72.26 E-value=27 Score=34.22 Aligned_cols=79 Identities=9% Similarity=0.022 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
..++ |-+.|+-+|+=|....... ...+.+..+||+|.. ..+.++.++..+.+
T Consensus 49 ~~C~-~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~wk-------- 119 (370)
T cd06389 49 AFCS-QFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD-------- 119 (370)
T ss_pred HHHH-HhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCCc--------
Confidence 3344 4568999888877765554 688888899999962 33444445555554
Q ss_pred eEEEEechhhhchhh---HHHHHHhcCCeEE
Q 020005 217 RIGVLAKNAILTAGF---YQEKLQHEGFEVV 244 (332)
Q Consensus 217 rVGlLaT~~T~~s~l---Y~~~l~~~Gi~vv 244 (332)
+|+++.-. ....+. +.+.+++.|.+++
T Consensus 120 ~vailYds-d~gl~~lq~l~~~~~~~g~~V~ 149 (370)
T cd06389 120 KFAYLYDS-DRGLSTLQAVLDSAAEKKWQVT 149 (370)
T ss_pred EEEEEecC-chHHHHHHHHHHhhccCCceEE
Confidence 99999953 222222 3344555687765
No 161
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=72.23 E-value=28 Score=28.81 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=64.0
Q ss_pred HHHHHHhcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCeEEec-----CccchhhchHHHHHHHhcC---
Q 020005 199 AKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVLP-----DKATMEHTLIPALDALNRK--- 265 (332)
Q Consensus 199 ~~~l~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~P-----~~~~q~~~l~~~i~~ik~g--- 265 (332)
++++.++|++ +|++++.... ....-|++.++++|++...- +......... ...+++.
T Consensus 1 ~~~L~~~G~r--------~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~pd 70 (160)
T PF13377_consen 1 VDYLIERGHR--------RIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQ--LLWLRRLRPD 70 (160)
T ss_dssp HHHHHHTT-S--------SEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHH--HHHHHTCSSS
T ss_pred ChHHHHCCCC--------eEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHH--HHHHhcCCCc
Confidence 4677888876 9999994321 12223677888889875321 1111111000 0122221
Q ss_pred -ChHHHHHHHHHHHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 266 -DVEGARNLLRIALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 266 -~~~~a~~~l~~~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
.+-........+++.+.+.| -|.-|+++.+.+.. ....+ ++..|+ +.+.+++.+++......+
T Consensus 71 aii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p-~it~i~~~~~~~g~~a~~~l~~~i~ 139 (160)
T PF13377_consen 71 AIICSNDRLALGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSP-PITTIDQDPREMGREAVELLLDRIE 139 (160)
T ss_dssp EEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSS-TSEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCcHHH-HHHcC-CCceecCCHHHHHHHHHHHHHHHhh
Confidence 11112233444455565554 47888888887654 22222 345565 677788888888877644
No 162
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=72.15 E-value=72 Score=28.39 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=78.3
Q ss_pred HHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 157 KRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
.++.|.+.++|.+++...... ..++.+++. ++|++.+ ...+++++.+.|.+ +|
T Consensus 47 ~i~~l~~~~~dgii~~~~~~~~~~~~~~~~~-~ipvv~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~i 117 (259)
T cd01542 47 ALELLARQKVDGIILLATTITDEHREAIKKL-NVPVVVVGQDYPGISSVVYDDYGAGYELGEYLAQQGHK--------NI 117 (259)
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHhcC-CCCEEEEeccCCCCCEEEECcHHHHHHHHHHHHHcCCC--------cE
Confidence 345677889999988654322 334555442 4555432 23455666665544 89
Q ss_pred EEEechhh------hchhhHHHHHHhcCC-eE-EecCccchhhchHHHH-HHHhcCChHH----HHHHHHHHHHHHHhCC
Q 020005 219 GVLAKNAI------LTAGFYQEKLQHEGF-EV-VLPDKATMEHTLIPAL-DALNRKDVEG----ARNLLRIALQVLLVRA 285 (332)
Q Consensus 219 GlLaT~~T------~~s~lY~~~l~~~Gi-~v-v~P~~~~q~~~l~~~i-~~ik~g~~~~----a~~~l~~~~~~L~~~g 285 (332)
++++...+ .+..-|++.+++.|. ++ +.......+. -...+ +.++++..+. .......+++.+.+.|
T Consensus 118 ~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~~~~d~~a~g~~~~l~~~g 196 (259)
T cd01542 118 AYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETDFSYES-AYEAAQELLEPQPPDAIVCATDTIALGAMKYLQELG 196 (259)
T ss_pred EEEcCCcccchhHHHHHHHHHHHHHHcCCChHHeeeccCchhh-HHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcC
Confidence 99964321 112337788888887 22 1111111110 11112 2233322111 1123334445555554
Q ss_pred C----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 286 V----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 286 a----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
. |.-|+|+-..+... -..+ .+..|+ +...+++.+++.....
T Consensus 197 ~~vp~di~v~g~d~~~~~~-~~~~-~l~ti~~~~~~~g~~a~~~l~~~ 242 (259)
T cd01542 197 RRIPEDISVAGFGGYELSS-VVTP-SLTTVDFGYKEAGKKAAELLLQL 242 (259)
T ss_pred CCCCCceEEEecCCchhhc-cccC-CceEEeeCHHHHHHHHHHHHHHH
Confidence 3 67788887766421 1122 123332 3445666666665543
No 163
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=71.82 E-value=31 Score=30.25 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=50.1
Q ss_pred EEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 020005 83 VGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (332)
Q Consensus 83 IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (332)
+||+ ||..+-..+.++..+....- -..++-+.|--..|+ .+ .+.++..
T Consensus 1 V~Ii--mGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~-------------------------~~----~~~~~~a 49 (156)
T TIGR01162 1 VGII--MGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPE-------------------------LM----LEYAKEA 49 (156)
T ss_pred CEEE--ECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHH-------------------------HH----HHHHHHH
Confidence 4677 88888888999888766432 224444545222222 22 3334557
Q ss_pred HHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH
Q 020005 162 EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (332)
Q Consensus 162 e~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive 196 (332)
++.|+++|+....-+-..---+...+..|||++.-
T Consensus 50 ~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 50 EERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPV 84 (156)
T ss_pred HHCCCeEEEEeCCccchhHHHHHhccCCCEEEecC
Confidence 77898765544444333335677778999998753
No 164
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=71.68 E-value=70 Score=28.04 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS 214 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~ 214 (332)
.++.+.+.|+|+|++.-...... ++.+. ..++|++.+ ....++.+.+.|.+
T Consensus 47 ~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~-~~~ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~------ 119 (264)
T cd01537 47 ALENLIARGVDGIIIAPSDLTAPTIVKLAR-KAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKGHR------ 119 (264)
T ss_pred HHHHHHHcCCCEEEEecCCCcchhHHHHhh-hcCCCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHHhcCC------
Confidence 34456666888777643332222 34443 245565432 34555667666544
Q ss_pred CceEEEEechhh-----hchhhHHHHHHhcC-CeEE--ec-CccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHH
Q 020005 215 PLRIGVLAKNAI-----LTAGFYQEKLQHEG-FEVV--LP-DKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQ 279 (332)
Q Consensus 215 ~~rVGlLaT~~T-----~~s~lY~~~l~~~G-i~vv--~P-~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~ 279 (332)
+|++++.... ....-|++.+++.| ++.. .. +.+.++ ....+ ..++++. .+. .......+++
T Consensus 120 --~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~ 195 (264)
T cd01537 120 --RIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDAEK--GYQAAEELLTAHPDPTAIFAANDDMALGALR 195 (264)
T ss_pred --cEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCHHH--HHHHHHHHHhcCCCCCEEEEcCcHHHHHHHH
Confidence 9999976432 22345777788777 3322 11 111111 11112 2334332 110 1122233445
Q ss_pred HHHhCCC----CEEEECCCCcccCCCCCCCCCCcee-chHHHHHHHHHHHHHhh
Q 020005 280 VLLVRAV----NTVILASDDMQDLLPPDDPLLKKCI-DPMDALARSTIKWVKSA 328 (332)
Q Consensus 280 ~L~~~ga----d~VILGCTElpli~~~~~~~~ipvI-D~~~~lA~a~v~~a~~~ 328 (332)
.+.+.|. +..|+|+...+..... .+ .+..+ -....+++.+++++...
T Consensus 196 ~~~~~g~~i~~~i~i~~~d~~~~~~~~-~~-~~~ti~~~~~~~g~~~~~~~~~~ 247 (264)
T cd01537 196 ALREAGLRVPDDISVIGFDGTPEALLA-GP-PLTTVRQPPDELGRAAVELLLEL 247 (264)
T ss_pred HHHHhCCCCCCCeEEEeecCccHHHhh-CC-cceeEeCCHHHHHHHHHHHHHHH
Confidence 5555554 6778888777654321 11 11222 23455666666665443
No 165
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=71.63 E-value=28 Score=33.93 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEechh--hhchhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAKNA--ILTAGF 231 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~--T~~s~l 231 (332)
..++.|+..|+|.++.-- .| .++++..+++|+-++ ....++++++.+++ ...+-|++... ......
T Consensus 117 ~~a~lL~~~g~d~vitvD--~H--~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~------~~~~vvV~pd~Ga~~~A~~ 186 (323)
T PRK02458 117 LVANMLVKAGVDRVLTLD--LH--AVQVQGFFDIPVDNLFTVPLFAKHYCKKGLS------GSDVVVVSPKNSGIKRARS 186 (323)
T ss_pred HHHHHHhhcCCCeEEEEe--cC--cHHhhccccCCceEEEEHHHHHHHHHHhCCC------CCceEEEEECCChHHHHHH
Confidence 346778889999876532 35 357777777776444 55666777665442 11455666533 222333
Q ss_pred HHHHHHhcCCeEE--ecCccchhhchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCC---
Q 020005 232 YQEKLQHEGFEVV--LPDKATMEHTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLL--- 300 (332)
Q Consensus 232 Y~~~l~~~Gi~vv--~P~~~~q~~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~--- 300 (332)
+.+.| |+.+. .................++.... + ..-..+.++++.|++.||..|.+.|||-=+.-
T Consensus 187 la~~L---~~~~~~~~~~r~~~~~~~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~ 263 (323)
T PRK02458 187 LAEYL---DAPIAIIDYAQDDSEREEGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAA 263 (323)
T ss_pred HHHHh---CCCEEEEEEecCCCcceeeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHH
Confidence 33333 54433 21100000000011122332111 2 24567888999999999999999999942211
Q ss_pred ----CC-C------CC--------CCCceechHHHHHHHHHHH
Q 020005 301 ----PP-D------DP--------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 301 ----~~-~------~~--------~~ipvID~~~~lA~a~v~~ 324 (332)
.. . +. ..+.+||-...+|+++.+.
T Consensus 264 ~~l~~s~i~~iv~TdTi~~~~~~~~k~~~isva~lla~~i~~~ 306 (323)
T PRK02458 264 EVLENAPIKEILVTDSVATKERVPKNVTYLSASELIADAIIRI 306 (323)
T ss_pred HHHhhCCCCEEEEECCcCCchhcCCCcEEEEhHHHHHHHHHHH
Confidence 00 0 11 1245789999998887554
No 166
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=71.21 E-value=95 Score=29.42 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=79.8
Q ss_pred HHHHHHcCCcEEEEeCC-CchhhHHHHhhhCCCC-ee--------------ec-----hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCH-LSHIWHDEVCKGCSVP-FL--------------HV-----SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CN-TaH~~~d~l~~~~~iP-ii--------------~I-----ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++... .....+..+.+. +| ++ .+ ...+++++.+.|++
T Consensus 108 i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~--~p~vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 177 (346)
T PRK10401 108 IEVLIRQRCNALIVHSKALSDDELAQFMDQ--IPGMVLINRVVPGYAHRCVCLDNVSGARMATRMLLNNGHQ-------- 177 (346)
T ss_pred HHHHHhcCCCEEEEeCCCCChHHHHHHHhc--CCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 44567788998877542 222233333332 22 32 11 23455667777665
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L 281 (332)
+|++++.... -+..-|.+.++++|+++ +.......+. -...+. .++.+. .+. .......+++.+
T Consensus 178 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al 256 (346)
T PRK10401 178 RIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGTPDMQG-GEAAMVELLGRNLQLTAVFAYNDNMAAGALTAL 256 (346)
T ss_pred eEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCCCChHH-HHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHH
Confidence 9999965332 11223788899988753 1111111110 111122 233221 111 122333455666
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.|. |.-|.|+...++..- ..+ .+..|+ +.+.+++.+++.....
T Consensus 257 ~~~G~~vP~disvigfD~~~~~~~-~~p-~lttv~~~~~~~g~~A~~~l~~~ 306 (346)
T PRK10401 257 KDNGIAIPLHLSIIGFDDIPIARY-TDP-QLTTVRYPIASMAKLATELALQG 306 (346)
T ss_pred HHcCCCCCCceEEEEeCCchHHhc-CCC-CCceeecCHHHHHHHHHHHHHHH
Confidence 66664 778889888774321 112 123333 4567888888777654
No 167
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.40 E-value=81 Score=28.28 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=75.8
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeech-----------------------HHHHHHHHHhcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS-----------------------ECVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~Iv-----------------------e~t~~~l~~~g~k~~~ 211 (332)
++.+...++|.|++...... ..++.+++ .++|++.+- ..+++++.+..
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~-~~iPvV~~~~~~~~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~----- 122 (275)
T cd06317 49 VEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ-AGIPVVITNSNISEKGFEFIKSFTGPDDISQGERSAEAMCKAL----- 122 (275)
T ss_pred HHHHHHcCCCEEEEecCCccccHHHHHHHHH-CCCcEEEeCCCCCCCccchhhhhccccHHHHHHHHHHHHHHHc-----
Confidence 34567789998877543322 33455443 467765431 12333344430
Q ss_pred CCCCceEEEEechh---h--hchhhHHHHHHhcC--CeEEecC--c-cchhhchHHHH-HHHhcC--ChHH----HHHHH
Q 020005 212 AGSPLRIGVLAKNA---I--LTAGFYQEKLQHEG--FEVVLPD--K-ATMEHTLIPAL-DALNRK--DVEG----ARNLL 274 (332)
Q Consensus 212 ~~~~~rVGlLaT~~---T--~~s~lY~~~l~~~G--i~vv~P~--~-~~q~~~l~~~i-~~ik~g--~~~~----a~~~l 274 (332)
.+.++|++++.+. + .+..-|++.++++| ++++... . ..++ ....+ +.+.+. +.+. .....
T Consensus 123 -~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ai~~~~d~~a 199 (275)
T cd06317 123 -GGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLDTQPADWDREK--AQVAMEALITKFGDDIDGVYAGDDNMA 199 (275)
T ss_pred -CCCceEEEEecCCCCchHHHHHHHHHHHHHhhCCCCEEEeccCCCCCHHH--HHHHHHHHHHhCCCCccEEEECCCcHH
Confidence 1224899996422 1 12244778888875 4543211 1 1111 11112 223331 1211 11222
Q ss_pred HHHHHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 275 RIALQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 275 ~~~~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
..+++.|.+.|. |.-|.|.-..+...... .......|+ +...+++.+++...+..+
T Consensus 200 ~g~~~~l~~~g~~~dv~v~g~d~~~~~~~~i~~~~~~ttv~~~~~~~g~~a~~~l~~~l~ 259 (275)
T cd06317 200 RGALNAAKEAGLAGGIVIVGANNFAVGYEAIRAGKYYGTIYQSPVDDGEAALQTAMDVLN 259 (275)
T ss_pred HHHHHHHHhcCCcCCcEEEEeCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHHHHhc
Confidence 344556666665 77787776665432110 000112232 455667777776665443
No 168
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=70.40 E-value=64 Score=30.49 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=18.4
Q ss_pred eEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 217 RIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 217 rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+|+++..+.-.- ...+++.+++.|++++.
T Consensus 137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~ 168 (340)
T cd06349 137 KVAILSVNTDWGRTSADIFVKAAEKLGGQVVA 168 (340)
T ss_pred EEEEEecCChHhHHHHHHHHHHHHHcCCEEEE
Confidence 788887655432 33456667777877763
No 169
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=69.99 E-value=54 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=21.3
Q ss_pred cCCcEEEEeCCCch-hhHHHHhhhCCCCeeech
Q 020005 164 AGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 164 ~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Iv 195 (332)
.|+.+|+-|..+.- .....+.+..++|+|+..
T Consensus 70 ~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~ 102 (298)
T cd06269 70 RGVVAVIGPSSSSSAEAVASLLGALHIPQISYS 102 (298)
T ss_pred CceEEEECCCCchHHHHHHHHhccCCCcEEecc
Confidence 57787777755432 234667777889988763
No 170
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.72 E-value=56 Score=32.89 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=44.9
Q ss_pred cCCcEEEEeCCC--chh----hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHH
Q 020005 164 AGARCIVMPCHL--SHI----WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKL 236 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~----~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l 236 (332)
.++|+||..--- .|+ .+.+.++ .++|+++=.+...+.++.... +.+.|||-||.| |-.+.+....|
T Consensus 64 ~~~d~vv~sp~i~~~~~~~~~~v~~a~~-~gi~i~~~~~~~~~~~~~~~~------~~~vI~VTGT~GKTTTt~ll~~iL 136 (460)
T PRK01390 64 SGFAALVLSPGVPLTHPKPHWVVDLARA-AGVEVIGDIELFCRERRAHAP------DAPFIAITGTNGKSTTTALIAHIL 136 (460)
T ss_pred cCCCEEEECCCCCccCCcccHHHHHHHH-cCCcEEeHHHHHHHHhhccCC------CCCEEEEeCCCcHHHHHHHHHHHH
Confidence 367887763311 233 4555543 589999987766554432111 123799999987 44556777778
Q ss_pred HhcCCeEE
Q 020005 237 QHEGFEVV 244 (332)
Q Consensus 237 ~~~Gi~vv 244 (332)
+..|..+.
T Consensus 137 ~~~g~~~~ 144 (460)
T PRK01390 137 REAGRDVQ 144 (460)
T ss_pred HhcCCCeE
Confidence 77776543
No 171
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.64 E-value=85 Score=28.22 Aligned_cols=161 Identities=12% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCCCCcC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k~~~~ 212 (332)
++.|...++|.+++.....+. .+..++ ..++|++.+ ...+++++.+. |.
T Consensus 50 i~~l~~~~vdgvii~~~~~~~~~~~l~~~~-~~~ipvV~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~----- 123 (273)
T cd06310 50 LENAIARGPDAILLAPTDAKALVPPLKEAK-DAGIPVVLIDSGLNSDIAVSFVATDNVAAGKLAAEALAELLGKK----- 123 (273)
T ss_pred HHHHHHhCCCEEEEcCCChhhhHHHHHHHH-HCCCCEEEecCCCCCCcceEEEeeChHHHHHHHHHHHHHHcCCC-----
Confidence 345666789987774322232 333433 245666644 12233445554 43
Q ss_pred CCCceEEEEec-hh--h--hchhhHHHHHHhc-CCeEEec--CccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHH
Q 020005 213 GSPLRIGVLAK-NA--I--LTAGFYQEKLQHE-GFEVVLP--DKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIAL 278 (332)
Q Consensus 213 ~~~~rVGlLaT-~~--T--~~s~lY~~~l~~~-Gi~vv~P--~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~ 278 (332)
++|++++. .. + .+..-|++.++++ |+++... .....+. -...+.. +.++ +++. .......++
T Consensus 124 ---~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~ 199 (273)
T cd06310 124 ---GKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVATQYSDSDYAK-ALDITEDLLTANPDLKGIFGANEGSAVGAA 199 (273)
T ss_pred ---ceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccCCcCHHH-HHHHHHHHHHhCCCceEEEecCchhHHHHH
Confidence 39999963 22 1 1223478889888 8865431 1111111 1111222 3222 2211 122334455
Q ss_pred HHHHhCCC--CEEEECCCCcccCCCCCC-CCCCceec-hHHHHHHHHHHHHHhh
Q 020005 279 QVLLVRAV--NTVILASDDMQDLLPPDD-PLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 279 ~~L~~~ga--d~VILGCTElpli~~~~~-~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.+.|- |.-|.|+-..+....... +.....|+ +...+++.+++.....
T Consensus 200 ~~l~~~g~~~di~vig~d~~~~~~~~~~~~~~~~ti~~~~~~~g~~a~~~l~~~ 253 (273)
T cd06310 200 RAVRQAGKAGKVKVVGFDASPEQIDALREGVIQALVVQNPYKMGYLGVKTAVAA 253 (273)
T ss_pred HHHHhcCCCCCeEEEEeCCChHHHHHHHcCceEEEEecCHHHHHHHHHHHHHHH
Confidence 56666665 788888887764321111 11123343 3456666666665443
No 172
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.60 E-value=24 Score=34.63 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=84.4
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHh-cCCCCcCCCCceEEEEechhh--hchhh
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEA-NMKPLEAGSPLRIGVLAKNAI--LTAGF 231 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T--~~s~l 231 (332)
.++.|+.+|+|.++.-- .| -++++..+++|+.++ ....++.+.+. +.+ .+-|+|.+.. -....
T Consensus 118 vA~ll~~~g~d~vit~D--lH--~~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~~--------~~vvVsPD~gg~~rA~~ 185 (332)
T PRK00553 118 VADLLTKAGVTRVTLTD--IH--SDQTQGFFDIPVDILRTYHVFLSRVLELLGKK--------DLVVVSPDYGGVKRARL 185 (332)
T ss_pred HHHHHHhcCCCEEEEEe--CC--hHHHHhhcCCCcceeechHHHHHHHHHhcCCC--------CeEEEEECCCcHHHHHH
Confidence 45778889999877532 35 478888889998654 44455666542 222 5666666432 22333
Q ss_pred HHHHHHhcCCeEEecCccc----hhhchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCCC
Q 020005 232 YQEKLQHEGFEVVLPDKAT----MEHTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLLP 301 (332)
Q Consensus 232 Y~~~l~~~Gi~vv~P~~~~----q~~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~~ 301 (332)
+.+.+ |.....-+... ... .+.....++.... + ..-..+..+++.|++.||..|...|||--+.-+
T Consensus 186 lA~~l---g~~~~vi~K~r~~~~~~~-~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~ 261 (332)
T PRK00553 186 IAESL---ELPLAIIDKRRPKHNVAE-SINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKN 261 (332)
T ss_pred HHHHh---CCCEEEEEEecCCcceEe-eEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCch
Confidence 33333 44332211110 000 0001122332111 2 234668888899999999999999999432210
Q ss_pred ------------CC------CC---------CCCceechHHHHHHHHHHH
Q 020005 302 ------------PD------DP---------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 302 ------------~~------~~---------~~ipvID~~~~lA~a~v~~ 324 (332)
.. +. ..+.+||-...+|+++.+.
T Consensus 262 a~~~l~~~~~~~~i~~iv~Tntip~~~~~~~~~~~~vsva~~la~~i~~~ 311 (332)
T PRK00553 262 AIQLFDEAFKKKLIDKLFVSNSIPQTKFEKKPQFKVVDLAHLYEEVLLCY 311 (332)
T ss_pred HHHHHHhccccCCCCEEEEeCCccCcccccCCCeEEEEhHHHHHHHHHHH
Confidence 00 00 1245799999998887543
No 173
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=69.53 E-value=82 Score=28.02 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=42.7
Q ss_pred HHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|...++|.|++.-.... ..++++++ .++|++.+ ...+++++.+.|.+ +
T Consensus 48 ~~~l~~~~~dgiii~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~ 118 (267)
T cd06283 48 LESLLAYQVDGLIVNPTGNNKELYQRLAK-NGKPVVLVDRKIPELGVDTVTLDNYEAAKEAVDHLIEKGYE--------R 118 (267)
T ss_pred HHHHHHcCcCEEEEeCCCCChHHHHHHhc-CCCCEEEEcCCCCCCCCCEEEeccHHHHHHHHHHHHHcCCC--------c
Confidence 34567788898776433222 22455433 35665544 33455666666554 8
Q ss_pred EEEEechhh------hchhhHHHHHHhcCC
Q 020005 218 IGVLAKNAI------LTAGFYQEKLQHEGF 241 (332)
Q Consensus 218 VGlLaT~~T------~~s~lY~~~l~~~Gi 241 (332)
|++++.... .+..-|.+.++++|+
T Consensus 119 i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~ 148 (267)
T cd06283 119 ILFVTEPLDEISPRMERYEGFKEALAEHGI 148 (267)
T ss_pred EEEEecCccccccHHHHHHHHHHHHHHcCC
Confidence 999964321 222347788888774
No 174
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.82 E-value=68 Score=32.16 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=46.8
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.--- .|+.+.+.++ .++|+++=++...+.. ..+ .|||-||.| |-.+.+....|...|.
T Consensus 68 ~~d~vV~sp~i~~~~p~~~~a~~-~~i~i~~~~el~~~~~---~~~--------~I~VTGT~GKTTTt~li~~iL~~~g~ 135 (448)
T PRK03803 68 QASEIIISPGLALDTPALRAAAA-MGIEVIGDIELFAREA---KAP--------VIAITGSNGKSTVTTLVGEMAKAAGK 135 (448)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCcEEEHHHHHHHhc---CCC--------EEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 57887775532 3566666554 4899999877765443 122 799999988 4456677788888777
Q ss_pred eEEe
Q 020005 242 EVVL 245 (332)
Q Consensus 242 ~vv~ 245 (332)
.+..
T Consensus 136 ~~~~ 139 (448)
T PRK03803 136 RVAV 139 (448)
T ss_pred CeEE
Confidence 6554
No 175
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=68.77 E-value=85 Score=27.90 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=74.9
Q ss_pred HHHHHHHcCCcEEEEe-CCCc-hhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMP-CHLS-HIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTa-H~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++. ++.. -..++.+++ .++|++-+ +..+++.+.+.|.+
T Consensus 47 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~-------- 117 (266)
T cd06282 47 AVETLLRQRVDGLILTVADAATSPALDLLDA-ERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQALAALGHR-------- 117 (266)
T ss_pred HHHHHHhcCCCEEEEecCCCCchHHHHHHhh-CCCCEEEEeccCCCCCCEEeeCcHHHHHHHHHHHHHcCcc--------
Confidence 3445667788988874 4432 123445443 35664332 23444556665543
Q ss_pred eEEEEechh------hhchhhHHHHHHhcCCeEEe--cCccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHHHHHH
Q 020005 217 RIGVLAKNA------ILTAGFYQEKLQHEGFEVVL--PDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 217 rVGlLaT~~------T~~s~lY~~~l~~~Gi~vv~--P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~~L~ 282 (332)
+|+++.... .-+..-|.+.++++|+++.. ........ ....+ +.+++. ..+. .......+++.+.
T Consensus 118 ~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 196 (266)
T cd06282 118 RIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIPFNTAA-LPSALLALLTAHPAPTAIFCSNDLLALAVIRALR 196 (266)
T ss_pred cEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCCCcHHH-HHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHH
Confidence 899995321 11234467788888875321 11111110 11112 234432 2211 1222334556666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.|. |.-|.|+-..+... -..+. +..|+ +...+++.+++...+.
T Consensus 197 ~~g~~~p~di~v~g~d~~~~~~-~~~p~-lt~i~~~~~~~g~~a~~~l~~~ 245 (266)
T cd06282 197 RLGLRVPDDLSVVGFDGIAIGR-LLTPP-LATVAQPNRDIGRQAVQRLLAR 245 (266)
T ss_pred HcCCCCCCceEEEeecchHHHh-hcCCC-ceeecCCHHHHHHHHHHHHHHH
Confidence 6664 55566665544321 11111 23332 3456666666655443
No 176
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=68.74 E-value=44 Score=32.58 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=46.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKP 209 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~ 209 (332)
.+++|.+.|+++|+-+.++.-.. ..++.+..++|+|+. .+++++.+.+.+.
T Consensus 51 ~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~-- 128 (347)
T TIGR03863 51 ALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRW-- 128 (347)
T ss_pred HHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCC--
Confidence 34456567788887776664443 345555667777664 1223344444333
Q ss_pred CcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
+||.+|.-+... -...+++.+++.|.+++.
T Consensus 129 ------kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~ 161 (347)
T TIGR03863 129 ------RRILLIQGPLPADALYADAFRRSAKRFGAKIVA 161 (347)
T ss_pred ------CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEE
Confidence 388888633322 224466677777887764
No 177
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.71 E-value=46 Score=31.62 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
+.+.++.|+++|+|.|.+- ||.+.
T Consensus 171 ~~~~a~~l~~~G~d~i~~~-nt~~g 194 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLI-NTLKG 194 (301)
T ss_pred HHHHHHHHHHcCCCEEEEE-ccccc
Confidence 3456678999999988653 44443
No 178
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=68.54 E-value=40 Score=33.21 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=40.0
Q ss_pred ceEEEEechhhhc---hhhHHHHHHhcCCeEEe----cCccchhhchHHHHHHHhcCChH-----HHHHHHHHHHHHHHh
Q 020005 216 LRIGVLAKNAILT---AGFYQEKLQHEGFEVVL----PDKATMEHTLIPALDALNRKDVE-----GARNLLRIALQVLLV 283 (332)
Q Consensus 216 ~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~~~L~~ 283 (332)
++|+++.-+...- ...+++.+++.|++++. |.....+..+.+.+..+++.+.+ ........+++.+.+
T Consensus 177 k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~il~qa~~ 256 (410)
T cd06363 177 NWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEAFFNSVIQ 256 (410)
T ss_pred cEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHh
Confidence 3899997433322 34566788888988753 22100111244445666643211 112233344555666
Q ss_pred CCC-CEEEECCCC
Q 020005 284 RAV-NTVILASDD 295 (332)
Q Consensus 284 ~ga-d~VILGCTE 295 (332)
.|. ..+++++..
T Consensus 257 ~g~~~~~~i~~~~ 269 (410)
T cd06363 257 QNLTGKVWIASEA 269 (410)
T ss_pred cCCCCCEEEEeCc
Confidence 665 345566544
No 179
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=68.09 E-value=18 Score=33.47 Aligned_cols=134 Identities=11% Similarity=0.145 Sum_probs=64.9
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh---H----HHHh--hhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhh
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW---H----DEVC--KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL 227 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~---~----d~l~--~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~ 227 (332)
.++.|+.+|.|++-++-| |.+ . +.++ ++.+++.++......++ .+--. . .-.+.|||+++-....
T Consensus 67 ~~~~L~~~G~d~vslANN--H~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a-~~p~i--~-~~~g~kia~l~~t~~~ 140 (250)
T PF09587_consen 67 ILDALKDAGFDVVSLANN--HIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEA-RRPAI--I-EVNGVKIAFLGYTDGE 140 (250)
T ss_pred HHHHHHHcCCCEEEecCC--CCccccHHHHHHHHHHHHHCCCcEeECcCChHHh-cCeEE--E-EECCEEEEEEEEEcCC
Confidence 456789999999999888 653 1 2222 14577777743322111 11000 0 0123589999975554
Q ss_pred chhhHHHHHHhcCCeEE------ecCccchhhchHHHHHHHhc-----------CCh--HHHHHHHHHHHHHHHhCCCCE
Q 020005 228 TAGFYQEKLQHEGFEVV------LPDKATMEHTLIPALDALNR-----------KDV--EGARNLLRIALQVLLVRAVNT 288 (332)
Q Consensus 228 ~s~lY~~~l~~~Gi~vv------~P~~~~q~~~l~~~i~~ik~-----------g~~--~~a~~~l~~~~~~L~~~gad~ 288 (332)
............+.... .+..... ..+...+++++. |.. .......++..+.+.+.|||.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDi 219 (250)
T PF09587_consen 141 NGYSSANGNRPYGFSYRPDKAGLNPNRPGI-ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADI 219 (250)
T ss_pred CCCccccccccccccccccccccccccchH-HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCE
Confidence 22211111000010000 0000000 113333444442 110 012345667778888899999
Q ss_pred EEECCCCcc
Q 020005 289 VILASDDMQ 297 (332)
Q Consensus 289 VILGCTElp 297 (332)
||=+=+|..
T Consensus 220 IiG~HpHv~ 228 (250)
T PF09587_consen 220 IIGHHPHVI 228 (250)
T ss_pred EEeCCCCcc
Confidence 998887765
No 180
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=68.01 E-value=20 Score=34.42 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCch----hhHHHHhhhCCCCeeec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH----IWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH----~~~d~l~~~~~iPii~I 194 (332)
..++.|.+.++.+|+-|..+.- .....+.+..++|+|+.
T Consensus 54 ~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 54 SVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred HHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 3456677667887777766543 44677888889998875
No 181
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=67.65 E-value=23 Score=34.44 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=72.8
Q ss_pred ccCeEEEEe--CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchh---hhhhc-------CCCchhhccccCCCCCCC
Q 020005 79 QANTVGIVG--GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNK---ELLSH-------DRSSFSSLNCKGGGVQLD 146 (332)
Q Consensus 79 ~~k~IGIiG--GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~---~ll~~-------~~~~~~~~~~~~~~~~~d 146 (332)
+...|||-| |.|=-. +..++......+.|---|+--||.=|- .|+++ ..+|--|++.. .+.+.
T Consensus 50 ~a~viGITG~PGaGKST---li~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~--~srG~ 124 (323)
T COG1703 50 NAHVIGITGVPGAGKST---LIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS--PSRGT 124 (323)
T ss_pred CCcEEEecCCCCCchHH---HHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec--CCCcc
Confidence 345899998 777555 566666666555343334444777652 12222 23444443221 23344
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHH
Q 020005 147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELK 203 (332)
Q Consensus 147 ~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~ 203 (332)
--.+.....+.+.-|+.+|.|+|+|=+--.-----+|.+.++.-++=++..+-..++
T Consensus 125 lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q 181 (323)
T COG1703 125 LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQ 181 (323)
T ss_pred chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHH
Confidence 457888888999999999999999988766555455555555555555444444443
No 182
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=66.94 E-value=74 Score=30.92 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCc
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLS 176 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTa 176 (332)
+.+.+.+.++.+.++|||.|.|+=-++
T Consensus 184 ~t~~~~~~~~~~~eaGad~i~i~d~~~ 210 (346)
T PRK00115 184 LADATIAYLNAQIEAGAQAVQIFDSWA 210 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence 334445555666679999998764433
No 183
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=66.90 E-value=56 Score=30.35 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeec---h-HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHV---S-ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~I---v-e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+++.|++.+.+.--+.- .++.++.+.+++|++-- - .+-++.+...|.. +| ++||
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~--------~v-ivgt 104 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGAD--------KV-SINT 104 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC--------EE-EECh
Confidence 4556788899998877544322 14677888888997642 1 2333444555553 55 8899
Q ss_pred hhhhchhhHHHHHHhcCC-eEEecCccchhhchHH-HHHHHh-cCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 224 NAILTAGFYQEKLQHEGF-EVVLPDKATMEHTLIP-ALDALN-RKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi-~vv~P~~~~q~~~l~~-~i~~ik-~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
..--...++.+..+.+|- ++++ +-+.....+.. ....++ +|..+.......+.++.+.+.|+|.|++
T Consensus 105 ~~~~~p~~~~~~~~~~~~~~iv~-slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iiv 174 (254)
T TIGR00735 105 AAVKNPELIYELADRFGSQCIVV-AIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILL 174 (254)
T ss_pred hHhhChHHHHHHHHHcCCCCEEE-EEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 776677777777777662 3332 11100000000 000111 2222222233455666778889998888
No 184
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=66.58 E-value=12 Score=37.04 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCee
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL 192 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii 192 (332)
++.|+++|||.+=+++++.... +.+|++++++|++
T Consensus 48 i~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlv 84 (360)
T PRK00366 48 IKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLV 84 (360)
T ss_pred HHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEE
Confidence 4679999999999999998876 8999999999986
No 185
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=66.46 E-value=59 Score=30.55 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhCCCCeee----chHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH----VSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~~iPii~----Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
.+.++..++.||++|-+.|-..+. .+..+++.+++||+. +...-+..+...|.+ -|.|+++.-
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD--------~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGAD--------AILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCC--------EEEEEeccC
Confidence 344567889999999887765333 256677788999984 122334556666765 688888762
Q ss_pred ---hhchhhHHHHHHhcCCeEEe
Q 020005 226 ---ILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 226 ---T~~s~lY~~~l~~~Gi~vv~ 245 (332)
+++ .++ +.....|+++++
T Consensus 145 ~~~~l~-~li-~~a~~lGl~~lv 165 (260)
T PRK00278 145 DDEQLK-ELL-DYAHSLGLDVLV 165 (260)
T ss_pred CHHHHH-HHH-HHHHHcCCeEEE
Confidence 222 223 333455777654
No 186
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=66.07 E-value=13 Score=36.64 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=31.4
Q ss_pred HHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCee
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL 192 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii 192 (332)
+++|+++|||.+=+++++.... +.+|++.+++|++
T Consensus 40 I~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlV 76 (346)
T TIGR00612 40 IRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLV 76 (346)
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEE
Confidence 4679999999999999998876 7999999999986
No 187
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=65.88 E-value=68 Score=31.11 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHHH--HHHh-cCCCCcCCCCceEEEEech
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKEA-NMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~~-g~k~~~~~~~~rVGlLaT~ 224 (332)
...++-|.. .+|+|++=... |..+.++.+..++||||..+- .+.. +++. |. . .-.+.+|+++|=
T Consensus 88 ~dt~~vls~-~~D~iv~R~~~-~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~--~-~l~g~~va~vGd- 161 (311)
T PRK14804 88 DLEARYLSR-NVSVIMARLKK-HEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPE--I-PLNQKQLTYIGV- 161 (311)
T ss_pred HHHHHHHHh-cCCEEEEeCCC-hHHHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHHHhCC--C-CCCCCEEEEECC-
Confidence 334566766 89999998764 667788999999999998542 2221 2221 20 0 013469999993
Q ss_pred hhhchhhHHHHHHhcCCeEEecC
Q 020005 225 AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
+..-.+-.-..+...|+++.+..
T Consensus 162 ~~rv~~Sl~~~~~~~G~~v~~~~ 184 (311)
T PRK14804 162 HNNVVNSLIGITAALGIHLTLVT 184 (311)
T ss_pred CCcHHHHHHHHHHHcCCEEEEEC
Confidence 33222223345667798886633
No 188
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=65.81 E-value=16 Score=37.35 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=56.3
Q ss_pred HHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCC-CCCcee
Q 020005 233 QEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDP-LLKKCI 311 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~-~~ipvI 311 (332)
-+.|++.|+++++|.. |. -- .......|+.+.+++..++.++.+.+.|++.||..|.+=-..+....+ ...+++
T Consensus 283 ~~vL~~~G~~~~~~~~--~~-CC--G~p~~~~G~~~~~~~~~~~ni~~~~~~~~~~IVt~c~~C~~~l~~~y~~~~~~v~ 357 (486)
T PRK06259 283 IRVLNAHGISVIIPKN--QV-CC--GSPLIRTGQTDVAEELKKKNLEIFNKLDVDTVVTICAGCGSTLKNDYKEKEFNVM 357 (486)
T ss_pred HHHHHHCCCeEecCCC--CC-cc--cHHHHhcCCHHHHHHHHHHHHHHHHhCCCCEEEECCchHHHHHHHhcccccccee
Confidence 3567888999988743 21 00 012345688777888888888888888999999988776554433211 235788
Q ss_pred chHHHHHH
Q 020005 312 DPMDALAR 319 (332)
Q Consensus 312 D~~~~lA~ 319 (332)
|..+.|++
T Consensus 358 ~i~e~L~~ 365 (486)
T PRK06259 358 DITEVLVE 365 (486)
T ss_pred eHHHHHHH
Confidence 99988886
No 189
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=65.77 E-value=30 Score=33.73 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=84.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech--HHHHHHHHHh-cCCCCcCCCCceEEEEechhh--hchhh
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS--ECVAKELKEA-NMKPLEAGSPLRIGVLAKNAI--LTAGF 231 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv--e~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T--~~s~l 231 (332)
.++.|+..|+|.++.- -.| .++++..+++|+.++- ...++++.+. +.+ +.-|++-+.. .....
T Consensus 116 va~ll~~~g~d~vitv--D~H--~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~--------~~vVVsPD~Ga~~rA~~ 183 (319)
T PRK04923 116 AAKMISAMGADRVLTV--DLH--ADQIQGFFDVPVDNVYASPLLLADIWRAYGTD--------NLIVVSPDVGGVVRARA 183 (319)
T ss_pred HHHHHHhcCCCEEEEE--eCC--hHHHHhhcCCCceeeeChHHHHHHHHHhcCCC--------CCEEEEECCchHHHHHH
Confidence 4577888999977642 235 3678888889976653 3455555442 111 4556665332 23333
Q ss_pred HHHHHHhcCCeEEecCccch--h-hchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCCC-
Q 020005 232 YQEKLQHEGFEVVLPDKATM--E-HTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLLP- 301 (332)
Q Consensus 232 Y~~~l~~~Gi~vv~P~~~~q--~-~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~~- 301 (332)
|.+.|.. .++..-+.... . ......+..++.... + ..-..+.++++.|++.||..|.+.|||--+.-+
T Consensus 184 lA~~L~~--~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a 261 (319)
T PRK04923 184 VAKRLDD--ADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPA 261 (319)
T ss_pred HHHHcCC--CCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchH
Confidence 4444421 33333222110 0 001111223332111 2 245678899999999999999999999432210
Q ss_pred ------C-C------CC----------CCCceechHHHHHHHHHHH
Q 020005 302 ------P-D------DP----------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 302 ------~-~------~~----------~~ipvID~~~~lA~a~v~~ 324 (332)
. . +. ..+.+||-...+|+++.+.
T Consensus 262 ~~~l~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~ 307 (319)
T PRK04923 262 VDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRI 307 (319)
T ss_pred HHHHhhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 0 0 11 1245789999998887443
No 190
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=65.56 E-value=44 Score=32.63 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
..++.|. .|+.+|+=|..+.... ...+.+..+||+|..
T Consensus 64 ~~~~~l~-~~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~ 102 (384)
T cd06393 64 KACDQLA-LGVVAIFGPSQGSCTNAVQSICNALEVPHIQL 102 (384)
T ss_pred Hhhcccc-cCcEEEECCCChHHHHHHHHHHhccCCCeEec
Confidence 3344453 6888888777765544 566777888888763
No 191
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=65.45 E-value=1e+02 Score=27.55 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=76.1
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCceEE
Q 020005 159 VFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 159 ~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
+.|...++|.|++ +++.....+.++.+ .++|++-+ ...+++.+.+.|.+ ||+
T Consensus 45 ~~l~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~--------~i~ 115 (261)
T cd06272 45 DLFKENRFDGVIIFGESASDVEYLYKIK-LAIPVVSYGVDYDLKYPIVNVDNEKAMELAVLYLAEKGHK--------KIA 115 (261)
T ss_pred HHHHHcCcCEEEEeCCCCChHHHHHHHH-cCCCEEEEcccCCCCCCEEEEChHHHHHHHHHHHHHcCch--------hEE
Confidence 4567778887664 45543333444432 34554322 33455666666654 899
Q ss_pred EEechhh--h---chhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHHhC
Q 020005 220 VLAKNAI--L---TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLLVR 284 (332)
Q Consensus 220 lLaT~~T--~---~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~~~ 284 (332)
+++.... . +..-|++.++++|+++ +.......+. ....+.. +.++. .+. .......+++.+.+.
T Consensus 116 ~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~ 194 (261)
T cd06272 116 YIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEG-GDNAAKKLLKESDLPTAIICGSYDIALGVLSALNKQ 194 (261)
T ss_pred EeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCHHH-HHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 9975432 1 1223677888888532 2221111110 1111222 32322 111 112223444556555
Q ss_pred CC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 285 AV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 285 ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
|. |.-|+|+-..+...- ..+ .+..|+ +.+.+++++++.....
T Consensus 195 g~~vp~dv~vvg~d~~~~~~~-~~~-~lttv~~~~~~~g~~a~~~l~~~ 241 (261)
T cd06272 195 GISIPEDIEIISYDNIPQMAI-IDP-PLTAVDVPIEEIAKKSLELLLKL 241 (261)
T ss_pred CCCCCCceEEEeeCChhHHhh-cCC-CCceeeccHHHHHHHHHHHHHHH
Confidence 54 777888777665431 112 123444 3456666666655443
No 192
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.44 E-value=1.3e+02 Score=30.07 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=43.6
Q ss_pred cCCcEEEEeCCCc--hhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHLS--HIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNTa--H~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|+++++.+-. ++.+...++ -++|+++-.+....... . +.|||-||.| |-.+.+....|+..|
T Consensus 67 ~~~d~vv~~~g~~~~~~~~~~a~~-~~i~~~~~~~~~~~~~~---~--------~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 67 EGVDLVVVSPGVPLDSPPVVQAHK-KGIEVIGEVELAYRFSK---A--------PIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred hcCCEEEECCCCCCCCHHHHHHHH-CCCcEEeHHHHHHhhcC---C--------CEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 4689888876532 223333333 58999998776544322 2 2899999987 445567777787766
Q ss_pred CeE
Q 020005 241 FEV 243 (332)
Q Consensus 241 i~v 243 (332)
..+
T Consensus 135 ~~~ 137 (450)
T PRK14106 135 RKT 137 (450)
T ss_pred CCe
Confidence 544
No 193
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=65.06 E-value=30 Score=33.36 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=82.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee--echHHHHHHHHHhcCCCCcCCCCceEEEEechhh--hchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL--HVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI--LTAGFY 232 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii--~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T--~~s~lY 232 (332)
.++.|+..|+|-++.- ..|. .+++..+++|+- +.....++++.+.... ...+.|++.... ....-|
T Consensus 100 va~lL~~~g~d~vi~v--DlHs--~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~------~~~~vvVspd~gg~~~a~~~ 169 (302)
T PLN02369 100 VANLITEAGADRVLAC--DLHS--GQSMGYFDIPVDHVYGQPVILDYLASKTIS------SPDLVVVSPDVGGVARARAF 169 (302)
T ss_pred HHHHHHhcCCCEEEEE--ECCc--hHHhhccCCceecccchHHHHHHHHHhCCC------CCceEEEEECcChHHHHHHH
Confidence 4577888999987765 4464 567777788884 4455666777654321 014556655332 222334
Q ss_pred HHHHHhcCCeEEecC--ccchhhchHHHHHHHhcC------ChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCC----
Q 020005 233 QEKLQHEGFEVVLPD--KATMEHTLIPALDALNRK------DVEGARNLLRIALQVLLVRAVNTVILASDDMQDLL---- 300 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~--~~~q~~~l~~~i~~ik~g------~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~---- 300 (332)
.+.+....+.++.-. .+.....+ .....++.. ++-..-..+..+++.|++.|+..|.+.|||.-+.-
T Consensus 170 a~~l~~~~~~~l~k~R~~~~~~~~~-~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~ 248 (302)
T PLN02369 170 AKKLSDAPLAIVDKRRQGHNVAEVM-NLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIE 248 (302)
T ss_pred HHHcCCCCEEEEEEecCCcceeeeE-ecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHH
Confidence 444422222222110 11000000 001122211 11123456788888899999999999999843211
Q ss_pred ---CC-C------CC---------CCCceechHHHHHHHHHHH
Q 020005 301 ---PP-D------DP---------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 301 ---~~-~------~~---------~~ipvID~~~~lA~a~v~~ 324 (332)
.. . +. ..+..+|-...+|+++.+.
T Consensus 249 ~l~~~~~~~iv~t~ti~~~~~~~~~~~~~~~v~~~la~~i~~~ 291 (302)
T PLN02369 249 RLSSGLFQEVIVTNTIPVSEKNYFPQLTVLSVANLLGETIWRV 291 (302)
T ss_pred HHHhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHH
Confidence 10 0 00 1234788888888886443
No 194
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=64.88 E-value=67 Score=31.00 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHHH--HHH-hcCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKE-ANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~-~g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|... +|+|++=... |..+.++.+.+++||||..+. .++. +.+ .|. -.+.+|+++|-
T Consensus 88 l~Dt~~~l~~~-~D~iv~R~~~-~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~-----l~gl~i~~vGd 160 (304)
T PRK00779 88 IEDTARVLSRY-VDAIMIRTFE-HETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGS-----LKGLKVAWVGD 160 (304)
T ss_pred HHHHHHHHHHh-CCEEEEcCCC-hhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhCC-----cCCcEEEEEeC
Confidence 55667778888 9999999874 778899999999999998642 1111 222 221 13458999997
Q ss_pred -hhhhchhhHHHHHHhcCCeEEecCc
Q 020005 224 -NAILTAGFYQEKLQHEGFEVVLPDK 248 (332)
Q Consensus 224 -~~T~~s~lY~~~l~~~Gi~vv~P~~ 248 (332)
..|..| .-..+...|+++.+..+
T Consensus 161 ~~~v~~S--l~~~l~~~g~~v~~~~P 184 (304)
T PRK00779 161 GNNVANS--LLLAAALLGFDLRVATP 184 (304)
T ss_pred CCccHHH--HHHHHHHcCCEEEEECC
Confidence 233333 33457778998876433
No 195
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=64.36 E-value=1.1e+02 Score=27.50 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=43.1
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeech---------------------HHHHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHVS---------------------ECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~Iv---------------------e~t~~~l~~~g~k~~~~~ 213 (332)
++.|.+.++|.|++.+..... .+.++ ...++|++.+. ..+++++.+.. +
T Consensus 49 i~~l~~~~vdgiii~~~~~~~~~~~~~~l-~~~~iPvv~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~------~ 121 (272)
T cd06301 49 VENFIAQGVDAIIVVPVDTAATAPIVKAA-NAAGIPLVYVNRRPENAPKGVAYVGSDEVVAGRLQAEYVADKL------G 121 (272)
T ss_pred HHHHHHcCCCEEEEecCchhhhHHHHHHH-HHCCCeEEEecCCCCCCCCeeEEEecChHHHHHHHHHHHHHHh------C
Confidence 445777899998875543222 23333 24467766432 12334454430 1
Q ss_pred CCceEEEEechh-h----hchhhHHHHHHhcC-CeEE
Q 020005 214 SPLRIGVLAKNA-I----LTAGFYQEKLQHEG-FEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~-T----~~s~lY~~~l~~~G-i~vv 244 (332)
..++|++++... . .+..-|++.++++| +++.
T Consensus 122 ~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 158 (272)
T cd06301 122 GKGNVAILMGPLGQSAQIDRTKGVEEVLAKYPDIKVV 158 (272)
T ss_pred CCccEEEEECCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence 224899996432 1 22344788888887 6543
No 196
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=64.13 E-value=20 Score=33.45 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=21.3
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVP 190 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iP 190 (332)
++...++|||+|.+++-+.-.-+.++.+.++.|
T Consensus 161 ~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~P 193 (238)
T PF13714_consen 161 AKAYAEAGADMIFIPGLQSEEEIERIVKAVDGP 193 (238)
T ss_dssp HHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSE
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCC
Confidence 445678999999999875443455555555555
No 197
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=64.13 E-value=34 Score=33.52 Aligned_cols=127 Identities=14% Similarity=0.180 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeee--chHHHHHHHHHhcCCCCcCCCCceEEEEechhh--hchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH--VSECVAKELKEANMKPLEAGSPLRIGVLAKNAI--LTAGFY 232 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~--Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T--~~s~lY 232 (332)
.++.|+.+|+|.++.-- .|. .+++..+++|+-+ .....++++++.... ++-|++-+.. -....|
T Consensus 130 vA~lL~~~g~d~vitvD--lH~--~~~~~fF~ipv~nl~~~~~l~~~i~~~~~~--------~~vvVsPD~gg~~ra~~~ 197 (330)
T PRK02812 130 VANLITKAGADRVLAMD--LHS--AQIQGYFDIPCDHVYGSPVLLDYLASKNLE--------DIVVVSPDVGGVARARAF 197 (330)
T ss_pred HHHHHHhcCCCEEEEEE--CCc--hHHcCccCCCceeeeChHHHHHHHHhcCCC--------CeEEEEECCccHHHHHHH
Confidence 45778889999876432 353 6778878888654 455666666554222 5666665433 233445
Q ss_pred HHHHHhcCCeEEecCccchh-hchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCC
Q 020005 233 QEKLQHEGFEVVLPDKATME-HTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDD 295 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~~~q~-~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTE 295 (332)
.+.|....+.++........ ...+.....++.... + .....+..+++.|++.|+..|++.|||
T Consensus 198 A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH 267 (330)
T PRK02812 198 AKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATH 267 (330)
T ss_pred HHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEc
Confidence 55542111222211100000 000000112221111 1 134567888899999999999999999
No 198
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=63.98 E-value=20 Score=34.26 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCC----chhhHHHHhhhCCCCee------------------echHHHHHH
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHL----SHIWHDEVCKGCSVPFL------------------HVSECVAKE 201 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNT----aH~~~d~l~~~~~iPii------------------~Ive~t~~~ 201 (332)
..+.+++.+...+.++.|.++|+|+|++=+.. +...++.+++..+.|++ .++..+.+.
T Consensus 127 ~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~ 206 (305)
T PF02574_consen 127 GLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDEL 206 (305)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHH
Confidence 44667888989999999999999999998665 34446666664445543 122222222
Q ss_pred HHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc-CCeE-EecCccchhhchHHHHHHHhcCChHHHHHHHHHHHH
Q 020005 202 LKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-GFEV-VLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQ 279 (332)
Q Consensus 202 l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~v-v~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~ 279 (332)
+..... ...-||+=.|.+........+..... .+.+ ++|+........ ....+..+.-...+...++
T Consensus 207 ~~~~~~------~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-----~~~~~~~~~~~~~~~~~~~ 275 (305)
T PF02574_consen 207 LRALPP------GPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG-----KVWSETPEDFAPEWAEFVK 275 (305)
T ss_dssp HHHHCT------T-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-----GGSTTTTTSHGGG-HHHHH
T ss_pred HHHhhh------hhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc-----cccccchhhhHHHHHHHHH
Confidence 111111 11268888888876666666665553 5554 468754332110 0111111111111566677
Q ss_pred HHHhCCCCEEEECCCCc
Q 020005 280 VLLVRAVNTVILASDDM 296 (332)
Q Consensus 280 ~L~~~gad~VILGCTEl 296 (332)
++.+.|+ .||=||-.-
T Consensus 276 ~~~~~G~-~iiGGCCGt 291 (305)
T PF02574_consen 276 EWVEAGA-RIIGGCCGT 291 (305)
T ss_dssp HHHHHHH-CEE---TT-
T ss_pred HHHHhCC-EEEEeCCCC
Confidence 7777788 689999654
No 199
>PLN02591 tryptophan synthase
Probab=63.72 E-value=1.3e+02 Score=28.24 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=34.0
Q ss_pred EeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCch-hhccccCCCCCCCHHHHHHHHHHHHHHHHHc
Q 020005 86 VGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSF-SSLNCKGGGVQLDDSLIVENLRRKRVFLEKA 164 (332)
Q Consensus 86 iGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~-~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~ 164 (332)
=.|+...-..++.+++.+. ...|+++...- ||. .+ -+.+-++.+.++
T Consensus 58 ~~G~~~~~~~~~~~~~r~~----~~~p~ilm~Y~-----------N~i~~~-----------------G~~~F~~~~~~a 105 (250)
T PLN02591 58 EKGTTLDSVISMLKEVAPQ----LSCPIVLFTYY-----------NPILKR-----------------GIDKFMATIKEA 105 (250)
T ss_pred HcCCCHHHHHHHHHHHhcC----CCCCEEEEecc-----------cHHHHh-----------------HHHHHHHHHHHc
Confidence 3488888877777776522 24677765521 211 11 022334678899
Q ss_pred CCcEEEEe
Q 020005 165 GARCIVMP 172 (332)
Q Consensus 165 Gad~IvI~ 172 (332)
|+|.++||
T Consensus 106 Gv~Gviip 113 (250)
T PLN02591 106 GVHGLVVP 113 (250)
T ss_pred CCCEEEeC
Confidence 99999999
No 200
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.69 E-value=65 Score=30.42 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH 177 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH 177 (332)
+.+.++.++++|+|.|.+ .||.+
T Consensus 168 ~~~~a~~~~~~G~d~i~~-~nt~~ 190 (296)
T cd04740 168 IVEIARAAEEAGADGLTL-INTLK 190 (296)
T ss_pred HHHHHHHHHHcCCCEEEE-ECCCc
Confidence 345567899999999855 55543
No 201
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=63.25 E-value=20 Score=34.39 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh-cCCCCcCCCCceEEEEechhhhchhhHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA-NMKPLEAGSPLRIGVLAKNAILTAGFYQE 234 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T~~s~lY~~ 234 (332)
++.++.++-|+|+++++.-|+|-.|. .-|-|++ + ..+++++. +. ...+=|+.|+-... +++
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~Y~------~~p~Ldf-d-~l~~I~~~~~v---------PLVLHGgSG~~~e~-~~k 220 (286)
T PRK12738 159 EAKRFVELTGVDSLAVAIGTAHGLYS------KTPKIDF-Q-RLAEIREVVDV---------PLVLHGASDVPDEF-VRR 220 (286)
T ss_pred HHHHHHHHhCCCEEEeccCcccCCCC------CCCcCCH-H-HHHHHHHHhCC---------CEEEeCCCCCCHHH-HHH
Confidence 44566778899999999999999874 1354443 2 22333332 11 24555666665333 444
Q ss_pred HHHhcCCeEE
Q 020005 235 KLQHEGFEVV 244 (332)
Q Consensus 235 ~l~~~Gi~vv 244 (332)
. .+.|+.=+
T Consensus 221 a-i~~GI~Ki 229 (286)
T PRK12738 221 T-IELGVTKV 229 (286)
T ss_pred H-HHcCCeEE
Confidence 3 34566433
No 202
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=63.05 E-value=48 Score=31.81 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=40.8
Q ss_pred cCeEEEEeCCC---hHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGAS---VDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmG---p~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.|+-|-.||.| -.+..++.+||.....+....+++|.-.. |-+- .....++. .+
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART-----------Da~~--------~~~~~~eA----i~ 173 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV-----------ESLI--------LGKGMEDA----LK 173 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec-----------cccc--------ccCCHHHH----HH
Confidence 56777788773 34667788888766655323455554411 1100 00122233 23
Q ss_pred HHHHHHHcCCcEEEEeC
Q 020005 157 KRVFLEKAGARCIVMPC 173 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~C 173 (332)
-++...++|||+|.+++
T Consensus 174 Ra~ay~eAGAD~ifv~~ 190 (285)
T TIGR02320 174 RAEAYAEAGADGIMIHS 190 (285)
T ss_pred HHHHHHHcCCCEEEecC
Confidence 35667889999999985
No 203
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=62.98 E-value=19 Score=34.52 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++.-|+|-.|.
T Consensus 160 eA~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (285)
T PRK07709 160 ECKHLVEATGIDCLAPALGSVHGPYK 185 (285)
T ss_pred HHHHHHHHhCCCEEEEeecccccCcC
Confidence 44567788899999999999999874
No 204
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=62.91 E-value=18 Score=36.72 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEe--CCCchhh----HHHHhhhCCCCeeechH
Q 020005 150 IVENLRRKRVFLEKAGARCIVMP--CHLSHIW----HDEVCKGCSVPFLHVSE 196 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~--CNTaH~~----~d~l~~~~~iPii~Ive 196 (332)
....-.++++.|.+.|+|++++. |-|-|-. ..+|.+ .+||++||.-
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~-~GiPvv~~~~ 372 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIER-AGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH-cCCCEEEEee
Confidence 34556677899999999998886 8898875 355544 6899999854
No 205
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=62.23 E-value=1.3e+02 Score=28.19 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred HHHHHcCCcEEEEeCCC------chhh-HHHHhhhCCCCeeechH-----------------HHHHHHHHhcCCCCcCCC
Q 020005 159 VFLEKAGARCIVMPCHL------SHIW-HDEVCKGCSVPFLHVSE-----------------CVAKELKEANMKPLEAGS 214 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNT------aH~~-~d~l~~~~~iPii~Ive-----------------~t~~~l~~~g~k~~~~~~ 214 (332)
...+++|||-|=+|+|- .++- ..+..+..++|+.-|+. .=++.+++.|.+
T Consensus 15 ~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~------ 88 (241)
T COG3142 15 LAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQ------ 88 (241)
T ss_pred HHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCC------
Confidence 34678899999998884 4443 67777778999877754 344556777765
Q ss_pred CceEEEEechhhhchhhHHHHHHhc-CCeEE
Q 020005 215 PLRIGVLAKNAILTAGFYQEKLQHE-GFEVV 244 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv 244 (332)
..-+|.|.+.+.+.....++.++.. |+.+.
T Consensus 89 GVV~G~lt~dg~iD~~~le~Li~aA~gL~vT 119 (241)
T COG3142 89 GVVLGALTADGNIDMPRLEKLIEAAGGLGVT 119 (241)
T ss_pred cEEEeeecCCCccCHHHHHHHHHHccCCcee
Confidence 3378999999999999999988766 56553
No 206
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.09 E-value=1.1e+02 Score=27.57 Aligned_cols=81 Identities=10% Similarity=0.029 Sum_probs=44.5
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec---------------------hHHHHHHHHHhcCCCCcC
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV---------------------SECVAKELKEANMKPLEA 212 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I---------------------ve~t~~~l~~~g~k~~~~ 212 (332)
.++.|.+.++|.|++...... ..++.+. ..++|++.+ ....++.+.+.-
T Consensus 52 ~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~-~~gIpvV~~d~~~~~~~~~~~~V~~d~~~~g~~aa~~l~~~~------ 124 (274)
T cd06311 52 QQDLLINRKIDALVILPFESAPLTQPVAKAK-KAGIFVVVVDRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKL------ 124 (274)
T ss_pred HHHHHHHcCCCEEEEeCCCchhhHHHHHHHH-HCCCeEEEEcCCCCCCcccceEEcCCcHHHHHHHHHHHHHHh------
Confidence 345677789998887654322 2344443 346666543 122334455440
Q ss_pred CCCceEEEEechhhh----chhhHHHHHHhcCCeEE
Q 020005 213 GSPLRIGVLAKNAIL----TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 213 ~~~~rVGlLaT~~T~----~s~lY~~~l~~~Gi~vv 244 (332)
++.++|++++..... +..-|++.++++|++++
T Consensus 125 ~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~ 160 (274)
T cd06311 125 GGNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKIL 160 (274)
T ss_pred CCCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEE
Confidence 123489999643221 12347788888887764
No 207
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=62.00 E-value=98 Score=28.06 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=48.3
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS 214 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~ 214 (332)
.++.+.+.++|.|++.....+.. +.+++ ..++|++-+ ...+++++.+.+.+ .++
T Consensus 49 ~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~-~~giPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~---~~~ 124 (268)
T cd06306 49 QLEDCAAWGADAILLGAVSPDGLNEILQQV-AASIPVIALVNDINSPDITAKVGVSWYEMGYQAGEYLAQRHPK---GSK 124 (268)
T ss_pred HHHHHHHcCCCEEEEcCCChhhHHHHHHHH-HCCCCEEEeccCCCCcceeEEecCChHHHHHHHHHHHHHHhhc---CCC
Confidence 34567788999988865544443 44443 357787643 23344555565531 012
Q ss_pred CceEEEEechhh-----hchhhHHHHHHhcCCeEE
Q 020005 215 PLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 215 ~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv 244 (332)
.++|++++-+.. .+..-|.+.++++|++++
T Consensus 125 ~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~ 159 (268)
T cd06306 125 PAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEIS 159 (268)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEe
Confidence 258999854221 122337788888888764
No 208
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=61.88 E-value=88 Score=26.48 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc--hhhHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT--AGFYQEKL 236 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~--s~lY~~~l 236 (332)
+..++.++|+|++.|-..|... .+..+.+.+++.+.+ ..+|.+=|+..+-. .....+.+
T Consensus 48 ~~a~~~~~d~V~lS~~~~~~~~-------------~~~~~~~~L~~~~~~------~~~i~vGG~~~~~~~~~~~~~~~l 108 (137)
T PRK02261 48 DAAIETDADAILVSSLYGHGEI-------------DCRGLREKCIEAGLG------DILLYVGGNLVVGKHDFEEVEKKF 108 (137)
T ss_pred HHHHHcCCCEEEEcCccccCHH-------------HHHHHHHHHHhcCCC------CCeEEEECCCCCCccChHHHHHHH
Confidence 3445678888888886655431 124445666666442 23677766653321 23344678
Q ss_pred HhcCCeEEecCcc
Q 020005 237 QHEGFEVVLPDKA 249 (332)
Q Consensus 237 ~~~Gi~vv~P~~~ 249 (332)
++.|++.+.+...
T Consensus 109 ~~~G~~~vf~~~~ 121 (137)
T PRK02261 109 KEMGFDRVFPPGT 121 (137)
T ss_pred HHcCCCEEECcCC
Confidence 8899988875433
No 209
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=61.75 E-value=18 Score=34.80 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++.-|+|-.|.
T Consensus 160 ea~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (286)
T PRK08610 160 ECQELVEKTGIDALAPALGSVHGPYK 185 (286)
T ss_pred HHHHHHHHHCCCEEEeeccccccccC
Confidence 44567788999999999999999874
No 210
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=61.74 E-value=85 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=27.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeech
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS 195 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv 195 (332)
.++.+...|+.+|+=|.++.... ...+....++|+|...
T Consensus 55 ~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~ 94 (328)
T cd06351 55 VCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISIS 94 (328)
T ss_pred HHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEee
Confidence 34455477888888776665444 4778888899999863
No 211
>PRK08444 hypothetical protein; Provisional
Probab=61.21 E-value=13 Score=36.68 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=79.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhh-hcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELL-SHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll-~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
-+.+.|.||..|....+||..+++...+. .++.+-.+|..++- ++. ..+.+ ..+.
T Consensus 97 ~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~-~~a~~~g~~----------------------~~e~ 153 (353)
T PRK08444 97 IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVD-FLSRKFGKS----------------------YEEV 153 (353)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHH-HHHHHcCCC----------------------HHHH
Confidence 46899999999999999999999988876 55655555533321 110 00110 2355
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCC---CCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhh---
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCS---VPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF--- 231 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~---iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~l--- 231 (332)
++.|.++|.|- +|++.+-.+-+++++.+. .+--.. ..+.+.+.+.|++ .. -=+++|---|.+.++
T Consensus 154 l~~LkeAGl~~--~~g~~aEi~~~~vr~~I~p~k~~~~~~-~~i~~~a~~~Gi~---~~---sg~l~G~gEt~edrv~hl 224 (353)
T PRK08444 154 LEDMLEYGVDS--MPGGGAEIFDEEVRKKICKGKVSSERW-LEIHKYWHKKGKM---SN---ATMLFGHIENREHRIDHM 224 (353)
T ss_pred HHHHHHhCccc--CCCCCchhcCHHHHhhhCCCCCCHHHH-HHHHHHHHHcCCC---cc---ceeEEecCCCHHHHHHHH
Confidence 67899999995 577666677788887642 221111 2233556677764 11 233556555554332
Q ss_pred H-HHHHHhc--CCeEEecC
Q 020005 232 Y-QEKLQHE--GFEVVLPD 247 (332)
Q Consensus 232 Y-~~~l~~~--Gi~vv~P~ 247 (332)
+ =+.|+.. |+..+.|-
T Consensus 225 ~~Lr~Lq~~t~gf~~fIp~ 243 (353)
T PRK08444 225 LRLRDLQDKTGGFNAFIPL 243 (353)
T ss_pred HHHHHhccccCCceEEEec
Confidence 1 1223333 67777764
No 212
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=60.92 E-value=21 Score=34.25 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++.-|+|-.|.
T Consensus 157 ea~~Fv~~TgvD~LAvaiGt~HG~yk 182 (282)
T TIGR01858 157 EAKEFVEATGVDSLAVAIGTAHGLYK 182 (282)
T ss_pred HHHHHHHHHCcCEEecccCccccCcC
Confidence 44567788999999999999998764
No 213
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=60.41 E-value=81 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++.+++.|+..|+|.|+...+.
T Consensus 69 ~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 69 LIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp HHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred hhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 34455678899999999999987665
No 214
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=60.13 E-value=18 Score=36.58 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEe--CCCchhh----HHHHhhhCCCCeeechH
Q 020005 150 IVENLRRKRVFLEKAGARCIVMP--CHLSHIW----HDEVCKGCSVPFLHVSE 196 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~--CNTaH~~----~d~l~~~~~iPii~Ive 196 (332)
....-.++++.|.+.|+|++++. |-|-|-. ..+|.+ .+||++||.-
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~-~GIPvV~i~~ 372 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIER-AGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH-cCCCEEEEee
Confidence 33445677889999999998886 8898875 345544 6899999853
No 215
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=59.92 E-value=14 Score=35.50 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
.++.++.++-|+|+++++.-|+|-.|.
T Consensus 158 e~a~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12857 158 EEARRFVEETGVDALAIAIGTAHGPYK 184 (284)
T ss_pred HHHHHHHHHHCCCEEeeccCccccccC
Confidence 345567788899999999999999874
No 216
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=59.87 E-value=1.4e+02 Score=27.40 Aligned_cols=122 Identities=20% Similarity=0.133 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCeEE----ecCccchhhchHHHHHH-HhcC
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALDA-LNRK 265 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~~-ik~g 265 (332)
..+++++.+.|.+ +|++|+.... .+..-|++.++++|+++. .......+. ....++. ++.+
T Consensus 141 ~~a~~~l~~~G~~--------~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 211 (309)
T PRK11041 141 FEAVNYLHELGHK--------RIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEA-GAKALKQLLDLP 211 (309)
T ss_pred HHHHHHHHHcCCc--------eEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHH-HHHHHHHHHcCC
Confidence 4455666666654 8999864322 123337788888887542 111111111 1112222 3332
Q ss_pred C-hHH----HHHHHHHHHHHHHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 266 D-VEG----ARNLLRIALQVLLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 266 ~-~~~----a~~~l~~~~~~L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
. .+. .......+++.+.+.|. |..|.|+-..+.... ..+ .+..|+ ..+.+++.+++.....
T Consensus 212 ~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vvg~D~~~~~~~-~~~-~~~ti~~~~~~~g~~av~~l~~~ 282 (309)
T PRK11041 212 QPPTAVFCHSDVMALGALSQAKRMGLRVPQDLSIIGFDDIDLAQY-CDP-PLTTVAQPRYEIGREAMLLLLEQ 282 (309)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEeCCchhhhh-cCC-CceEEecCHHHHHHHHHHHHHHH
Confidence 2 111 11222344555666554 677888877764432 122 123444 4566777777766554
No 217
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=59.78 E-value=19 Score=31.31 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=43.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
+++|+ ||..+-..+.+++.+....- -...+-+.|-- + .++.+ .+.++.
T Consensus 2 ~V~Ii--~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saH----------R---------------~p~~l----~~~~~~ 50 (150)
T PF00731_consen 2 KVAII--MGSTSDLPIAEEAAKTLEEFGIPYEVRVASAH----------R---------------TPERL----LEFVKE 50 (150)
T ss_dssp EEEEE--ESSGGGHHHHHHHHHHHHHTT-EEEEEE--TT----------T---------------SHHHH----HHHHHH
T ss_pred eEEEE--eCCHHHHHHHHHHHHHHHHcCCCEEEEEEecc----------C---------------CHHHH----HHHHHH
Confidence 57777 77777777888887666542 11122333311 1 22223 333455
Q ss_pred HHHcCCcE-EEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 161 LEKAGARC-IVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 161 Le~~Gad~-IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
+++.|+++ |+++-..+|- ---+...+..|||++
T Consensus 51 ~~~~~~~viIa~AG~~a~L-pgvva~~t~~PVIgv 84 (150)
T PF00731_consen 51 YEARGADVIIAVAGMSAAL-PGVVASLTTLPVIGV 84 (150)
T ss_dssp TTTTTESEEEEEEESS--H-HHHHHHHSSS-EEEE
T ss_pred hccCCCEEEEEECCCcccc-hhhheeccCCCEEEe
Confidence 77778885 4444444443 355666788999987
No 218
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=59.76 E-value=24 Score=33.85 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++.-|+|-.|.
T Consensus 159 eA~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12737 159 AAAEFVERTGIDSLAVAIGTAHGLYK 184 (284)
T ss_pred HHHHHHHHhCCCEEeeccCccccccC
Confidence 44567778999999999999999874
No 219
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=59.74 E-value=24 Score=27.66 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeEE
Q 020005 197 CVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 197 ~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv 244 (332)
..++.+.+.|++ |.||.+|- +.|+++|+++.
T Consensus 4 ~~a~~l~~lG~~-----------i~AT~gTa------~~L~~~Gi~~~ 34 (95)
T PF02142_consen 4 PLAKRLAELGFE-----------IYATEGTA------KFLKEHGIEVT 34 (95)
T ss_dssp HHHHHHHHTTSE-----------EEEEHHHH------HHHHHTT--EE
T ss_pred HHHHHHHHCCCE-----------EEEChHHH------HHHHHcCCCce
Confidence 445677777654 99999994 45778899843
No 220
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.61 E-value=1.3e+02 Score=26.83 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=75.2
Q ss_pred HHHHcCCcEEEEeC-CCchhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 160 FLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 160 ~Le~~Gad~IvI~C-NTaH~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
.+.+.++|.|++.. ......++.+.+ .++|++-+ ...+++++.+.|.+ +|
T Consensus 55 ~~~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~i 125 (270)
T cd06294 55 MIQQKRVDGFILLYSREDDPIIDYLKE-EKFPFVVIGKPEDDKENITYVDNDNIQAGYDATEYLIKLGHK--------KI 125 (270)
T ss_pred HHHHcCcCEEEEecCcCCcHHHHHHHh-cCCCEEEECCCCCCCCCCCeEEECcHHHHHHHHHHHHHcCCc--------cE
Confidence 34456799877753 223334555543 35555443 22344555555543 89
Q ss_pred EEEechhhh-----chhhHHHHHHhcCCe----EEecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHHHh
Q 020005 219 GVLAKNAIL-----TAGFYQEKLQHEGFE----VVLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 219 GlLaT~~T~-----~s~lY~~~l~~~Gi~----vv~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L~~ 283 (332)
++++..... +..-|++.++++|++ .+.......+. ....+. .++.+. .+. .......+++.+.+
T Consensus 126 ~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 204 (270)
T cd06294 126 AFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEG-GYKALKKLLEQHPRPTAIVATDDLLALGVLKVLNE 204 (270)
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHH
Confidence 999753321 122367788888752 22222211111 112222 233332 221 12344455666666
Q ss_pred CCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 284 RAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 284 ~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.|. |..|.|....+... -..+ .+..|+ ....+++.+++...+.
T Consensus 205 ~g~~iP~dv~vig~d~~~~~~-~~~p-~l~~i~~~~~~~g~~a~~~l~~~ 252 (270)
T cd06294 205 LGLKVPEDLSIIGFNNSILSE-LAHP-PLTSVDINPRELGYEAAELLIDL 252 (270)
T ss_pred cCCCCCcceEEEeeCChhhhh-ccCC-CceEeccCHHHHHHHHHHHHHHH
Confidence 665 66677766655321 1111 123333 2345666666665544
No 221
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=59.58 E-value=86 Score=32.45 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEeC---CCchhh--HHHHhhhC-CCCeee--chHH-HHHHHHHhcCCCCcCCCCceEEE-----
Q 020005 155 RRKRVFLEKAGARCIVMPC---HLSHIW--HDEVCKGC-SVPFLH--VSEC-VAKELKEANMKPLEAGSPLRIGV----- 220 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~C---NTaH~~--~d~l~~~~-~iPii~--Ive~-t~~~l~~~g~k~~~~~~~~rVGl----- 220 (332)
.+.++.|.++|+|+|+|-+ ++...+ +++|++.+ ++||+- +... .++.+.+.|.+-. +||+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I------~vg~g~Gs~ 316 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGL------RIGMGSGSI 316 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEE------EECCcCCcc
Q ss_pred --------EechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 221 --------LAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 221 --------LaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
.|-+....-.-..+.+++.|+.++. .|.+....+..+ ..+.|||+|.+|
T Consensus 317 ~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIa------------------dGGi~~~~di~k-----Ala~GA~~Vm~G 373 (495)
T PTZ00314 317 CITQEVCAVGRPQASAVYHVARYARERGVPCIA------------------DGGIKNSGDICK-----ALALGADCVMLG 373 (495)
T ss_pred cccchhccCCCChHHHHHHHHHHHhhcCCeEEe------------------cCCCCCHHHHHH-----HHHcCCCEEEEC
No 222
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=59.36 E-value=1.2e+02 Score=31.24 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=45.2
Q ss_pred cCCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
..+|.+|..=-- .|+++++.+ ..++||++=++...+.. +. .+-|||-||+| |-.+.+..+.|++.|
T Consensus 68 ~~~d~vV~SPGi~~~~p~v~~A~-~~gi~i~~dieL~~r~~---~~-------~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 68 AEFDLVVKSPGIPPTHPLVEAAK-AAGIEIIGDIELFYRLS---GE-------APIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred ccCCEEEECCCCCCCCHHHHHHH-HcCCcEEeHHHHHHHhc---CC-------CCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 356777653211 355554443 45899999888776543 11 12699999988 334566777888888
Q ss_pred CeEEe
Q 020005 241 FEVVL 245 (332)
Q Consensus 241 i~vv~ 245 (332)
.++..
T Consensus 137 ~~~~l 141 (448)
T COG0771 137 LDALL 141 (448)
T ss_pred CCcee
Confidence 86544
No 223
>PRK09701 D-allose transporter subunit; Provisional
Probab=59.34 E-value=1.6e+02 Score=27.68 Aligned_cols=208 Identities=8% Similarity=0.007 Sum_probs=99.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
.+||++- |..+-.||..+.+...+. ....+.++..+. ..+.+.. .+.
T Consensus 25 ~~Igvi~---~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~-----------------------~~~~~~~----~~~ 74 (311)
T PRK09701 25 AEYAVVL---KTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-----------------------EGDFQSQ----LQL 74 (311)
T ss_pred CeEEEEe---CCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCC-----------------------CCCHHHH----HHH
Confidence 4899985 233456777777666542 455555442110 1111112 223
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec---------------------------hHHHHHHHHHh-c
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV---------------------------SECVAKELKEA-N 206 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I---------------------------ve~t~~~l~~~-g 206 (332)
++.+...|+|.|++....... .++++. ..++|++-+ ...+++++.++ |
T Consensus 75 i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~-~~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~g 153 (311)
T PRK09701 75 FEDLSNKNYKGIAFAPLSSVNLVMPVARAW-KKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLG 153 (311)
T ss_pred HHHHHHcCCCEEEEeCCChHHHHHHHHHHH-HCCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHHHhC
Confidence 345667889998887654332 233333 346666533 34455666664 4
Q ss_pred CCCCcCCCCceEEEEec-hhh----hchhhHHHHHHhcC-CeEEe--cCccchhhchHHHHHH-HhcC-ChHH----HHH
Q 020005 207 MKPLEAGSPLRIGVLAK-NAI----LTAGFYQEKLQHEG-FEVVL--PDKATMEHTLIPALDA-LNRK-DVEG----ARN 272 (332)
Q Consensus 207 ~k~~~~~~~~rVGlLaT-~~T----~~s~lY~~~l~~~G-i~vv~--P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~ 272 (332)
.+ .++|++++. ... .+..-|++.++++| ++.+. ......+. -...++. +.++ +++. ...
T Consensus 154 ~~------~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~I~~~~d~ 226 (311)
T PRK09701 154 AE------GGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIK-ALDVATNVLQRNPNIKAIYCANDT 226 (311)
T ss_pred CC------CCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEecCCCCCHHH-HHHHHHHHHHhCCCCCEEEECCcc
Confidence 31 248998843 321 22334788888887 76532 11111111 0111222 3332 2211 112
Q ss_pred HHHHHHHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHH
Q 020005 273 LLRIALQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVK 326 (332)
Q Consensus 273 ~l~~~~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~ 326 (332)
....+++.+.+.|- |..|.|+...+...... .+.....|+ +...+++.+++...
T Consensus 227 ~A~g~~~al~~~G~~~dv~vvg~d~~~~~~~~~~~~~i~ttv~~~~~~~G~~a~~~l~ 284 (311)
T PRK09701 227 MAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMV 284 (311)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEeCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHH
Confidence 23344455555443 77788888876443211 111012232 33455555555543
No 224
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=59.25 E-value=1.1e+02 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=16.9
Q ss_pred eEEE-EechhhhchhhHHHHHHhcCCeEEe
Q 020005 217 RIGV-LAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 217 rVGl-LaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
++-| ++|..--.+.-..+.+++.|+.++-
T Consensus 88 ~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 88 KIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp EEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 4444 4554444456677788888987764
No 225
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=59.22 E-value=17 Score=33.15 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCC-ch-----hhHHHHhhhCCCCee
Q 020005 152 ENLRRKRVFLEKAGARCIVMPCHL-SH-----IWHDEVCKGCSVPFL 192 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~CNT-aH-----~~~d~l~~~~~iPii 192 (332)
+.+.+.++.+.++|+|+|.+.-.| .. .+.+.+++.+++|++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvi 57 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVI 57 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEE
Confidence 334556678999999999997554 22 235778888899987
No 226
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=59.17 E-value=17 Score=31.79 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=37.5
Q ss_pred echHHHHHHHHHhcCCCCcCCCCceEEEEechhhh-chhhHHHHHHhcCCeEEe
Q 020005 193 HVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 193 ~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~-~s~lY~~~l~~~Gi~vv~ 245 (332)
.=++++++.++++|++ ||||-.--|.. +++.+.+.|+.+|++|+.
T Consensus 41 tRveEiieFak~mgyk--------kiGiAfCiGL~~EA~~~~~iL~~~gFev~s 86 (157)
T PF08901_consen 41 TRVEEIIEFAKRMGYK--------KIGIAFCIGLRKEARILAKILEANGFEVYS 86 (157)
T ss_pred chHHHHHHHHHHcCCC--------eeeehhhHhHHHHHHHHHHHHHHCCCEEEE
Confidence 3379999999999987 99987666654 578899999999999874
No 227
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=58.30 E-value=49 Score=32.81 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHH---HHHhcCCeEEe
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv~ 245 (332)
-++...+.+++.|.+ |+.|++.++..+.+++++ .|++.|+++.+
T Consensus 18 ~~~~l~~~~~~~g~~--------~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~ 64 (383)
T PRK09860 18 SLTDAMNMMADYGFT--------RTLIVTDNMLTKLGMAGDVQKALEERNIFSVI 64 (383)
T ss_pred HHHHHHHHHHhcCCC--------EEEEEcCcchhhCccHHHHHHHHHHcCCeEEE
Confidence 345555666665544 888887655555666654 45666887643
No 228
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=58.15 E-value=1.9e+02 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHcCCcEEEEeCCCchh------------hHHHHhhhCCCCe-eec
Q 020005 162 EKAGARCIVMPCHLSHI------------WHDEVCKGCSVPF-LHV 194 (332)
Q Consensus 162 e~~Gad~IvI~CNTaH~------------~~d~l~~~~~iPi-i~I 194 (332)
+..|||+|.+.+...++ +.+.+++.+++|+ |..
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~ 131 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGG 131 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEec
Confidence 48999999999755555 2578888899999 553
No 229
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=58.09 E-value=19 Score=30.85 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive 196 (332)
+.+.++.|.+. +|+||+=... |..++++.+.+++||||..+
T Consensus 84 l~Dtar~ls~~-~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~ 124 (142)
T PF02729_consen 84 LEDTARVLSRY-VDAIVIRHPS-HGALEELAEHSSVPVINAGD 124 (142)
T ss_dssp HHHHHHHHHHH-CSEEEEEESS-HHHHHHHHHHCSSEEEEEEE
T ss_pred HHHHHHHHHHh-hheEEEEecc-chHHHHHHHhccCCeEcCcC
Confidence 45566788888 9999988665 88889999999999999865
No 230
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=57.96 E-value=37 Score=32.48 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHcCCcEEEEeCCCchhhH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWH 180 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~ 180 (332)
.++.++.|+|++++.+-|.|..+
T Consensus 159 ~~f~~~tgvD~Lavs~Gt~hg~~ 181 (282)
T TIGR01859 159 EQFVKETGVDYLAAAIGTSHGKY 181 (282)
T ss_pred HHHHHHHCcCEEeeccCcccccc
Confidence 34555679999999999999655
No 231
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=57.92 E-value=15 Score=35.19 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh-cCCCCcCCCCceEEEEechhhhchhhHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA-NMKPLEAGSPLRIGVLAKNAILTAGFYQE 234 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T~~s~lY~~ 234 (332)
++.++.++-|+|+++++.-|+|-.|.. -|-|++ + ..+++++. +. ...+=|+.|+-... +++
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~y~~------~p~Ld~-~-~L~~I~~~~~v---------PLVLHGgSG~~~e~-~~~ 220 (284)
T PRK09195 159 QAREFVEATGIDSLAVAIGTAHGMYKG------EPKLDF-D-RLENIRQWVNI---------PLVLHGASGLPTKD-IQQ 220 (284)
T ss_pred HHHHHHHHHCcCEEeeccCccccccCC------CCcCCH-H-HHHHHHHHhCC---------CeEEecCCCCCHHH-HHH
Confidence 445677788999999999999998753 233342 2 23334332 11 24556666665433 555
Q ss_pred HHHhcCCeEE
Q 020005 235 KLQHEGFEVV 244 (332)
Q Consensus 235 ~l~~~Gi~vv 244 (332)
. .+.|+.=+
T Consensus 221 a-i~~Gi~Ki 229 (284)
T PRK09195 221 T-IKLGICKV 229 (284)
T ss_pred H-HHcCCeEE
Confidence 4 34566433
No 232
>PRK07360 FO synthase subunit 2; Reviewed
Probab=57.81 E-value=53 Score=32.48 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=60.7
Q ss_pred cCeEEEEeCCChHHH-HHHHHHHHHHhccC-CCCCEEEecCCcchhhhh-hcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDST-LNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELL-SHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT-~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll-~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
-+.+.|.||.+|.-. .+||.++++...+. .++.+..+|...+ ..+. ..+. ...+
T Consensus 108 ~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei-~~~~~~~G~----------------------~~~e 164 (371)
T PRK07360 108 ATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEV-YFAAREDGL----------------------SYEE 164 (371)
T ss_pred CCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHH-HHHHhhcCC----------------------CHHH
Confidence 468999999999886 88999998888764 3444433331111 1110 0000 0234
Q ss_pred HHHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeee--chHHHHHHHHHhcCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLH--VSECVAKELKEANMK 208 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~--Ive~t~~~l~~~g~k 208 (332)
.++.|.++|+|.+. .|.+. +.+++++...-...+ ---.+++.+++.|++
T Consensus 165 ~l~~LkeAGld~~~---~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~ 216 (371)
T PRK07360 165 VLKALKDAGLDSMP---GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLP 216 (371)
T ss_pred HHHHHHHcCCCcCC---CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 56789999999883 55554 357777644211222 223566777888874
No 233
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=57.77 E-value=17 Score=29.20 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii 192 (332)
+....|+++|+++++|.|-+.+. .++..+.. +.|++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly 41 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLY 41 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEE
Confidence 33467899999999999999866 56666444 55544
No 234
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=57.74 E-value=1.4e+02 Score=29.56 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=39.9
Q ss_pred eEEEEechhhh---chhhHHHHHHhcCCeEE----ecCccchhhchHHHHHHHhcC-ChH-----HHHHHHHHHHHHHHh
Q 020005 217 RIGVLAKNAIL---TAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALDALNRK-DVE-----GARNLLRIALQVLLV 283 (332)
Q Consensus 217 rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~~ik~g-~~~-----~a~~~l~~~~~~L~~ 283 (332)
+|+++...... ....+.+.+++.|++++ .|....+ ..+...+..+++. ..+ ........+++.+.+
T Consensus 174 ~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~-~d~~~~l~~l~~~~~a~viil~~~~~~~~~~~~~a~~ 252 (452)
T cd06362 174 YVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATE-EEFDNIIRKLLSKPNARVVVLFCREDDIRGLLAAAKR 252 (452)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCH-HHHHHHHHHHhhcCCCeEEEEEcChHHHHHHHHHHHH
Confidence 89999875432 23456677888898775 2321111 1133334555431 110 011233444455556
Q ss_pred CCC--CEEEECCCCc
Q 020005 284 RAV--NTVILASDDM 296 (332)
Q Consensus 284 ~ga--d~VILGCTEl 296 (332)
.|. +.+++|+..+
T Consensus 253 ~g~~~~~~~i~~~~~ 267 (452)
T cd06362 253 LNAEGHFQWIASDGW 267 (452)
T ss_pred cCCcCceEEEEeccc
Confidence 665 5677776543
No 235
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=57.61 E-value=26 Score=34.72 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHH
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l 202 (332)
+++.-.......++.+.+.|+|.|+.+|-+=+.-++ ...+++++|+++..++.+
T Consensus 343 ~~~~s~~i~~~~~~~~~~~~ad~ivt~Cp~C~~ql~---~~~~~~~~H~~ell~~~~ 396 (397)
T TIGR03379 343 NYETSQAIGKSLFDQIEQSGADYVITDCETCKWQIE---MSTSLECIHPISLLAMAL 396 (397)
T ss_pred chHHHHHHHHHHHHHHHHhCCCEEEeCCcchHHHHH---hcCCCCCCCHHHHHHHHh
Confidence 445444545566788889999999999988665554 467899999998877653
No 236
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=57.47 E-value=64 Score=32.47 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=36.7
Q ss_pred CCceEEEEechhhhchhhHHHHHHh-cCCeEEecCccchh-hchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 214 SPLRIGVLAKNAILTAGFYQEKLQH-EGFEVVLPDKATME-HTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~~~l~~-~Gi~vv~P~~~~q~-~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
..+||.|.+- ..+.-+ +.+.|.+ .|++++.-...... ....+.++.+..+..-....-+.++.+.+.+.++|.+|-
T Consensus 289 ~Gkrvai~g~-~~~~~~-la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDllig 366 (427)
T PRK02842 289 RGKRVFFLPD-SQLEIP-LARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVVC 366 (427)
T ss_pred CCcEEEEECC-chhHHH-HHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEEc
Confidence 3458988773 333333 4556766 89998763321111 111122333332211000112333344556678997775
Q ss_pred C
Q 020005 292 A 292 (332)
Q Consensus 292 G 292 (332)
+
T Consensus 367 ~ 367 (427)
T PRK02842 367 G 367 (427)
T ss_pred c
Confidence 5
No 237
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=57.45 E-value=70 Score=31.36 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHH-hcCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKE-ANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~-~g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|++=+.. |..+.++.+.+++||||... +.+. .+.+ .|.. -.+.+|+++|=
T Consensus 91 l~DTarvls~y-~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~----l~gl~ia~vGD 164 (334)
T PRK01713 91 MKDTARVLGRM-YDAIEYRGFK-QSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKP----LSEISYVYIGD 164 (334)
T ss_pred HHHHHHHHHHh-CCEEEEEcCc-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCC----cCCcEEEEECC
Confidence 55667788888 9999998874 77789999999999999744 1221 1222 1200 12458999986
Q ss_pred --hhhhchhhHHHHHHhcCCeEEec
Q 020005 224 --NAILTAGFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 224 --~~T~~s~lY~~~l~~~Gi~vv~P 246 (332)
..+..|- -..+...|+++.+.
T Consensus 165 ~~~~v~~Sl--~~~~~~~g~~v~~~ 187 (334)
T PRK01713 165 ARNNMGNSL--LLIGAKLGMDVRIC 187 (334)
T ss_pred CccCHHHHH--HHHHHHcCCEEEEE
Confidence 2343333 34567779888663
No 238
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=57.26 E-value=86 Score=29.90 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 162 EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 162 e~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
++.++++|+=+..+.-.. .-.+.+..++|+|..
T Consensus 67 ~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 100 (347)
T cd06340 67 TEEGVVALVGAYQSAVTLAASQVAERYGVPFVVD 100 (347)
T ss_pred ccCCceEEecccchHhHHHHHHHHHHhCCCEEec
Confidence 344887777665543322 334444557777764
No 239
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=56.98 E-value=46 Score=31.52 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=23.0
Q ss_pred HHHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 157 KRVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 157 ~~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
.++.|.+ .++++|+-++.+.... ...+-+..++|+|..
T Consensus 58 ~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~ 97 (346)
T cd06330 58 EARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIAT 97 (346)
T ss_pred HHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEEc
Confidence 3344554 4899998776654432 334445567888763
No 240
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.43 E-value=1.5e+02 Score=26.58 Aligned_cols=111 Identities=10% Similarity=0.130 Sum_probs=50.7
Q ss_pred ceEEEEechh-----hhchhhHHHHHHhcCCeEEe--c-CccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHH
Q 020005 216 LRIGVLAKNA-----ILTAGFYQEKLQHEGFEVVL--P-DKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 216 ~rVGlLaT~~-----T~~s~lY~~~l~~~Gi~vv~--P-~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L 281 (332)
+||++++... ..+..-|++.++++|+++.. . .....+. -...+. .++++. .+. .......+++.+
T Consensus 126 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 204 (277)
T cd06319 126 GKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGIRQQKDFSYQE-TFDYTNDLLTANPDIRAIWLQGSDRYQGALDAI 204 (277)
T ss_pred CcEEEEeccCCCccHHHHHHHHHHHHHhcCCceEeeccCCCCCHHH-HHHHHHHHHHhCCCCCEEEECCCccchHHHHHH
Confidence 4899997422 22233478889988876431 1 1111010 111122 233221 111 011122344555
Q ss_pred HhCCC--CEEEECCCCcccCCCCCCCCCC-c--eechHHHHHHHHHHHHHhh
Q 020005 282 LVRAV--NTVILASDDMQDLLPPDDPLLK-K--CIDPMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~ga--d~VILGCTElpli~~~~~~~~i-p--vID~~~~lA~a~v~~a~~~ 328 (332)
.+.|. |.-|.|+-..+..........+ . ..++ ..+++.++++....
T Consensus 205 ~~~g~~~di~vvg~d~~~~~~~~~~~~~~~~tv~~~~-~~~g~~a~~~l~~~ 255 (277)
T cd06319 205 ATAGKTGKVLLICFDAEPEFIELLKSGALVGAGMQQP-FLMGERAVETVYNA 255 (277)
T ss_pred HHcCCCCCEEEEEcCCCHHHHHHhhcCceEEEEecCH-HHHHHHHHHHHHHH
Confidence 55554 5778898887644322111111 1 1233 56777777766544
No 241
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=56.06 E-value=53 Score=31.32 Aligned_cols=53 Identities=13% Similarity=0.008 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-------hhHHHHhhhCCCCee-e--chHHHHHHHHHhcCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH-------IWHDEVCKGCSVPFL-H--VSECVAKELKEANMK 208 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH-------~~~d~l~~~~~iPii-~--Ive~t~~~l~~~g~k 208 (332)
+.++.+++.|+++|.+-+|..+ ..++++++.+++|++ - +....++.+.+.|.+
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d 195 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCC
Confidence 3456677889999999999887 567889998888876 2 233455666776654
No 242
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=55.92 E-value=1.5e+02 Score=26.56 Aligned_cols=160 Identities=9% Similarity=0.033 Sum_probs=74.1
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeech--------------------HHHHHHHHHh--cCCCCcCC
Q 020005 159 VFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS--------------------ECVAKELKEA--NMKPLEAG 213 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~Iv--------------------e~t~~~l~~~--g~k~~~~~ 213 (332)
+.+.+.++|.|++...... ..++.+. ..++|++-+- ..+++++.+. |.
T Consensus 50 ~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~------ 122 (270)
T cd06308 50 ENFIRQGVDLLIISPNEAAPLTPVVEEAY-RAGIPVILLDRKILSDKYTAYIGADNYEIGRQAGEYIANLLPGK------ 122 (270)
T ss_pred HHHHHhCCCEEEEecCchhhchHHHHHHH-HCCCCEEEeCCCCCCccceEEeecCcHHHHHHHHHHHHHHcCCC------
Confidence 4456778998887543322 2234443 2466655331 2334455553 33
Q ss_pred CCceEEEEec-hhh----hchhhHHHHHHhc-CCeEEe-cCccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHHHH
Q 020005 214 SPLRIGVLAK-NAI----LTAGFYQEKLQHE-GFEVVL-PDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQV 280 (332)
Q Consensus 214 ~~~rVGlLaT-~~T----~~s~lY~~~l~~~-Gi~vv~-P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~~ 280 (332)
++|+++.. ... .+..-|.+.++++ |++++. ...+.....-...+ +.++.. +.+. .......+++.
T Consensus 123 --~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~a 200 (270)
T cd06308 123 --GNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLA 200 (270)
T ss_pred --ceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHH
Confidence 49999953 221 2233467788888 887542 21111100011112 223322 1111 11222334455
Q ss_pred HHhCCC--CEEEECCCCcccCCC---CC-CCCCCceechHHHHHHHHHHHHHhh
Q 020005 281 LLVRAV--NTVILASDDMQDLLP---PD-DPLLKKCIDPMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~ga--d~VILGCTElpli~~---~~-~~~~ipvID~~~~lA~a~v~~a~~~ 328 (332)
+.+.|. |.-|.|+...+.... .. .+..--.++. ..+++.+++.+...
T Consensus 201 l~~~g~~~dv~vvg~d~~~~~~~~l~~i~~~~~~~~i~~-~~~g~~a~~~l~~~ 253 (270)
T cd06308 201 AKRAGREKEIKFIGIDGLPGPGGGIEAVRDGELDATFLY-PTGGKEAIEVAMKI 253 (270)
T ss_pred HHHcCCCCCcEEEEecCCcchHHHHHHHHcCCeEEEeeC-hHHHHHHHHHHHHH
Confidence 555553 677888877664321 00 1100012332 23577777766554
No 243
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=55.70 E-value=66 Score=28.70 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech-----HHHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-----ECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv-----e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
++=+..+..+|+..+|+..|+ +.-.....+.+++|+|... .+.-+++++.+++ ...|+++|-
T Consensus 52 ~~W~~e~k~~gi~v~vvSNn~-e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~------~~~vvmVGD------ 118 (175)
T COG2179 52 RAWLAELKEAGIKVVVVSNNK-ESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLP------PEEVVMVGD------ 118 (175)
T ss_pred HHHHHHHHhcCCEEEEEeCCC-HHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCC------hhHEEEEcc------
Confidence 333456889999988888887 5556788888999999863 4566777887764 337999986
Q ss_pred hhHHHHHHhc--CCeEEe
Q 020005 230 GFYQEKLQHE--GFEVVL 245 (332)
Q Consensus 230 ~lY~~~l~~~--Gi~vv~ 245 (332)
.++.+.+..+ |+..+.
T Consensus 119 qL~TDVlggnr~G~~tIl 136 (175)
T COG2179 119 QLFTDVLGGNRAGMRTIL 136 (175)
T ss_pred hhhhhhhcccccCcEEEE
Confidence 6777777755 876654
No 244
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=55.66 E-value=1.1e+02 Score=27.74 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeee----chHHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLH----VSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~----Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+.+.|++.+.+-.-+.- ..+.++.+.+++|++= =-.+-++.+.+.|.+ +| ++||
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~--------~v-~iGs 106 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVD--------RV-ILGT 106 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCC--------EE-EECh
Confidence 3455677899998777655421 1356677778888653 112334455566654 44 7787
Q ss_pred hhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 224 NAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
..--...++.+..+.+|-+-+.|+-+.....+. + .|..+.......+.++.+.+.|++.|++-
T Consensus 107 ~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~-----~-~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 107 AAVENPEIVRELSEEFGSERVMVSLDAKDGEVV-----I-KGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred HHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEE-----E-CCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 554445567777777665545443322211111 1 12211111122334445566788887753
No 245
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=55.44 E-value=1.2e+02 Score=29.66 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|... +|+|++=+. .|..++++.+.+++||||..+. .+.. +.+. |. -.+.+|+++|-
T Consensus 91 l~Dt~rvls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~g~~va~vGd 163 (331)
T PRK02102 91 IEDTARVLGRM-YDGIEYRGF-KQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGP-----LKGLKLAYVGD 163 (331)
T ss_pred HHHHHHHHhhc-CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45566778777 999999986 4778899999999999997442 2111 2221 21 13458999986
Q ss_pred h--hhhchhhHHHHHHhcCCeEEec
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~P 246 (332)
. .+..|-+ ..+...|+++.+.
T Consensus 164 ~~~~v~~Sl~--~~~~~~g~~v~~~ 186 (331)
T PRK02102 164 GRNNMANSLM--VGGAKLGMDVRIC 186 (331)
T ss_pred CcccHHHHHH--HHHHHcCCEEEEE
Confidence 3 4554443 3567779887653
No 246
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=55.43 E-value=98 Score=30.10 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=21.8
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeee
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~ 193 (332)
+.+.+.|+.+|+=|.++.-.. .-.+.+..++|+|+
T Consensus 67 ~~~~~~~v~aiiGp~~S~~~~av~~~~~~~~ip~Is 102 (396)
T cd06373 67 DLYFQHKPDAFLGPGCEYAAAPVARFAAHWNVPVLT 102 (396)
T ss_pred HHHhccCCeEEECCCccchhHHHHHHHhcCCCceEC
Confidence 344456888877666553332 45566677788775
No 247
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=55.39 E-value=1.6e+02 Score=26.56 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCcee-chHHHHHHHHHHHHHhhc
Q 020005 276 IALQVLLVRAVNTVILASDDMQDLLPPDDPLLKKCI-DPMDALARSTIKWVKSAE 329 (332)
Q Consensus 276 ~~~~~L~~~gad~VILGCTElpli~~~~~~~~ipvI-D~~~~lA~a~v~~a~~~~ 329 (332)
.+++.+.+.| ..|.|+...|...-. .+. +..| -+...+++.++++.....
T Consensus 193 gv~~al~~~g--v~vigfD~~~~~~~~-~p~-lttv~~~~~~~~~~~~~~~~~~~ 243 (260)
T cd06304 193 GVIQAAKEAG--VYAIGVDSDQSALAP-DAV-LTSAVKNVDVAVYDAIKAVLDGT 243 (260)
T ss_pred HHHHHHHHcC--CEEEeecCchhhhcC-ccE-EEEEEeccHHHHHHHHHHHHcCC
Confidence 4556667777 778888887755422 121 2223 345556666666655443
No 248
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=55.38 E-value=62 Score=31.70 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
++...+.+++.|.+ |+.|++.+.+....-+.+.|++.|+++.+
T Consensus 11 l~~l~~~~~~~g~~--------~~livtd~~~~~~~~~~~~l~~~~~~~~~ 53 (367)
T cd08182 11 IAKLPSLLKGLGGK--------RVLLVTGPRSAIASGLTDILKPLGTLVVV 53 (367)
T ss_pred HHHHHHHHHhcCCC--------eEEEEeCchHHHHHHHHHHHHHcCCeEEE
Confidence 44455555554433 89888877765445567778887877654
No 249
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.31 E-value=1.6e+02 Score=26.68 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=76.5
Q ss_pred HHHHHHcCCcEEEEeCCCc---hhhHHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcC
Q 020005 158 RVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa---H~~~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~ 212 (332)
++.+.+.++|.|++.+... +..+..+.+ .++|++-+ ...+++++.+. .
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~-~~iPvV~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~-~----- 120 (272)
T cd06313 48 IENMASQGWDFIAVDPLGIGTLTEAVQKAIA-RGIPVIDMGTLIAPLQINVHSFLAPDNYFMGASVAQALCNA-M----- 120 (272)
T ss_pred HHHHHHcCCCEEEEcCCChHHhHHHHHHHHH-CCCcEEEeCCCCCCCCCceEEEECCCcHHHHHHHHHHHHHH-c-----
Confidence 3456678899888854422 223344432 24444322 23344555554 0
Q ss_pred CCCceEEEEechh-----hhchhhHHHHHHhcC-CeEEe--cCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHH
Q 020005 213 GSPLRIGVLAKNA-----ILTAGFYQEKLQHEG-FEVVL--PDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIAL 278 (332)
Q Consensus 213 ~~~~rVGlLaT~~-----T~~s~lY~~~l~~~G-i~vv~--P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~ 278 (332)
++.++|++++... ..+..-|.+.++++| ++++. +.....+. ....++. +..+ +++. .......++
T Consensus 121 ~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~ 199 (272)
T cd06313 121 GGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSK-AARIWETWLTKYPQLDGAFCHNDSMALAAY 199 (272)
T ss_pred CCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEeccCCCCCHHH-HHHHHHHHHHhCCCCCEEEECCCcHHHHHH
Confidence 1224899996431 123444788888875 66543 22211111 1112222 2222 1211 112223344
Q ss_pred HHHHhCCC-CEEEECCCCcccCCCCCCCC-CCceec-hHHHHHHHHHHHHHh
Q 020005 279 QVLLVRAV-NTVILASDDMQDLLPPDDPL-LKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 279 ~~L~~~ga-d~VILGCTElpli~~~~~~~-~ipvID-~~~~lA~a~v~~a~~ 327 (332)
+.+.+.|- |..|.|--..|...+...+. ....|+ +.....+.+++....
T Consensus 200 ~al~~~g~~di~vvgfd~~~~~~~~~~~g~~~ttv~~~~~~~g~~a~~~~~~ 251 (272)
T cd06313 200 QIMKAAGRTKIVIGGVDGDPPAIQAVSDGRMVATVRNPACRIHGGAIAAGVR 251 (272)
T ss_pred HHHHHcCCCceEEEeecCCHHHHHHHHcCceEEEEecCHHHHHHHHHHHHHH
Confidence 55555554 77777777777543221111 112343 677777776665543
No 250
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=55.13 E-value=53 Score=32.47 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH---HHHHhcCCeEEe
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ---EKLQHEGFEVVL 245 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~---~~l~~~Gi~vv~ 245 (332)
.++.+.+.+++.|.+ |+.|++-+...+.++++ +.|++.|+++.+
T Consensus 16 ~l~~l~~~l~~~g~~--------r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~ 62 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--------KALVVTDKDLIKFGVADKVTDLLDEAGIAYEL 62 (379)
T ss_pred HHHHHHHHHHhcCCC--------EEEEEcCcchhhccchHHHHHHHHHCCCeEEE
Confidence 345555566665544 88888877766666665 456677887654
No 251
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=55.03 E-value=28 Score=33.74 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh----------hHHHHhhhCCCCeeechHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI----------WHDEVCKGCSVPFLHVSEC 197 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~----------~~d~l~~~~~iPii~Ive~ 197 (332)
.+.++.|+++|+|.|.+-+-|... ++.++++.+++||+.-.+.
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI 203 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEI 203 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCc
Confidence 356678999999999997765321 2577888889999887654
No 252
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.03 E-value=1.1e+02 Score=24.73 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
.+.++.+++.|+..|+|.++. . +.++....+.+++.+.
T Consensus 60 i~~~~~a~~~g~~iI~IT~~~--~-l~~~~~~~~~~~~~~p 97 (119)
T cd05017 60 LSAVEQAKERGAKIVAITSGG--K-LLEMAREHGVPVIIIP 97 (119)
T ss_pred HHHHHHHHHCCCEEEEEeCCc--h-HHHHHHHcCCcEEECC
Confidence 345567788999999999876 2 4555555577777653
No 253
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=54.69 E-value=1.4e+02 Score=27.21 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeechH----HHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVSE----CVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~Ive----~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
.+.+++|++.|++.+.+..-+.. .++.++++.+++|++--.. +-++.+.+.|.. .| ++|
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~--------~v-~ig 100 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGAD--------KV-SIN 100 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCc--------eE-EEC
Confidence 34567789999997666554432 2467888888899874321 222334444542 33 667
Q ss_pred chhhhchhhHHHHHHhcCC
Q 020005 223 KNAILTAGFYQEKLQHEGF 241 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi 241 (332)
|..-....++.+..+..+-
T Consensus 101 ~~~~~~p~~~~~i~~~~~~ 119 (243)
T cd04731 101 SAAVENPELIREIAKRFGS 119 (243)
T ss_pred chhhhChHHHHHHHHHcCC
Confidence 6444445566666666553
No 254
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=54.16 E-value=2e+02 Score=27.23 Aligned_cols=157 Identities=13% Similarity=0.211 Sum_probs=81.5
Q ss_pred EEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHc
Q 020005 85 IVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKA 164 (332)
Q Consensus 85 IiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~ 164 (332)
+=.|+......++.+++.+ +...|+++...- ||.... -+.+-++.+.++
T Consensus 70 L~~g~~~~~~~~~~~~~r~----~~~~p~vlm~Y~-----------N~i~~~----------------G~e~F~~~~~~a 118 (263)
T CHL00200 70 LKQGINLNKILSILSEVNG----EIKAPIVIFTYY-----------NPVLHY----------------GINKFIKKISQA 118 (263)
T ss_pred HHcCCCHHHHHHHHHHHhc----CCCCCEEEEecc-----------cHHHHh----------------CHHHHHHHHHHc
Confidence 3468988888887777752 224676665521 221110 022334568899
Q ss_pred CCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc-CCeE
Q 020005 165 GARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-GFEV 243 (332)
Q Consensus 165 Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~v 243 (332)
|+|.++||=- |+-+ .+...+.+++.|+ ....|-++.|-.. ..+...+.. |+-.
T Consensus 119 GvdgviipDL---------------P~ee-~~~~~~~~~~~gi---------~~I~lv~PtT~~e-ri~~i~~~a~gFIY 172 (263)
T CHL00200 119 GVKGLIIPDL---------------PYEE-SDYLISVCNLYNI---------ELILLIAPTSSKS-RIQKIARAAPGCIY 172 (263)
T ss_pred CCeEEEecCC---------------CHHH-HHHHHHHHHHcCC---------CEEEEECCCCCHH-HHHHHHHhCCCcEE
Confidence 9999999743 3222 3455566677776 4666666666433 345544443 5554
Q ss_pred Ee--cCccchh----hchHHHHHHHhcC-ChH---H-HHHHHHHHHHHHHhCCCCEEEECCCCcccC
Q 020005 244 VL--PDKATME----HTLIPALDALNRK-DVE---G-ARNLLRIALQVLLVRAVNTVILASDDMQDL 299 (332)
Q Consensus 244 v~--P~~~~q~----~~l~~~i~~ik~g-~~~---~-a~~~l~~~~~~L~~~gad~VILGCTElpli 299 (332)
++ +....|. ..+.+.++.++.. +.+ . .... .+-++.+.+.|||.||.|..=+-.+
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~-~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGIST-SEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCC-HHHHHHHHhcCCCEEEECHHHHHHH
Confidence 43 3322232 1122223344421 100 0 0000 1223456678999999997654433
No 255
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=53.51 E-value=63 Score=31.40 Aligned_cols=151 Identities=25% Similarity=0.364 Sum_probs=74.4
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHHHhccCCCCCEEEec-CCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 82 TVGIVGGA--SVDSTLNLLGKLVQLSGEENDFPFLLCS-DPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 82 ~IGIiGGm--Gp~AT~~~y~kI~~~t~~d~~~~~vi~s-~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
+||-..|+ |-.+ ++++..+...++ ..|.++.. +|+ |..++.... +. ..+-.+.+.+
T Consensus 20 ~IG~FDGvHlGHq~---ll~~a~~~a~~~-~~~~~VitF~p~-P~~~~~~~~-~~---------------~~Lt~~~~k~ 78 (304)
T COG0196 20 TIGNFDGVHLGHQK---LLAQALEAAEKR-GLPVVVITFEPH-PRELLKPDK-PP---------------TRLTPLREKI 78 (304)
T ss_pred EEEcCCccchhHHH---HHHHHHHHHHHh-CCceEEEEecCC-CHHHcCCCC-Cc---------------cccCCHHHHH
Confidence 67777775 5554 556665444444 56665555 222 222221111 11 1111246677
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchh------hH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAG------FY 232 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~------lY 232 (332)
+.|+..|+|.+++- .|-.++.+...-+|+.+ .+...+. +-.+.|-+.+.-.+ +-
T Consensus 79 ~~l~~~gvd~~~v~-----~F~~~fa~ls~~~Fv~~------lv~~l~~---------k~ivvG~DF~FGk~~~g~~~~L 138 (304)
T COG0196 79 RLLAGYGVDALVVL-----DFDLEFANLSAEEFVEL------LVEKLNV---------KHIVVGFDFRFGKGRQGNAELL 138 (304)
T ss_pred HHHHhcCCcEEEEE-----eCCHhHhhCCHHHHHHH------HHhccCC---------cEEEEecccccCCCCCCCHHHH
Confidence 88999999998873 34344444444344331 1112221 45677766664222 22
Q ss_pred HHHHHhcCCeEEe-cCccchhhchH-HHH-HHHhcCChHHHHHHH
Q 020005 233 QEKLQHEGFEVVL-PDKATMEHTLI-PAL-DALNRKDVEGARNLL 274 (332)
Q Consensus 233 ~~~l~~~Gi~vv~-P~~~~q~~~l~-~~i-~~ik~g~~~~a~~~l 274 (332)
+...++ |++++. |.-..+...+. ..| +.+..|+++.|..+|
T Consensus 139 ~~~~~~-gf~v~~v~~~~~~~~~iSSt~IR~~L~~gdl~~A~~lL 182 (304)
T COG0196 139 RELGQK-GFEVTIVPKINEEGIRISSTAIRQALREGDLEEANKLL 182 (304)
T ss_pred HHhccC-CceEEEeccEecCCcEEchHHHHHHHhcCCHHHHHHhc
Confidence 333334 788765 43322211121 113 567788887665544
No 256
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.27 E-value=1.8e+02 Score=26.62 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=21.2
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I 194 (332)
++.+.+.++|.|++.....+ .+++++++ .++||+.+
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~-~~ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEALASAVEKAAD-AGIPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhhHHHHHHHHHH-CCCCEEEE
Confidence 44567789998777533323 34556554 36676544
No 257
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=53.22 E-value=1.3e+02 Score=28.90 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHHH--HHH-hcCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKE-ANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~-~g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|... +|+|++=... |....++.+.+++||||.... .++. +.+ .|. -.+.+|+++|-
T Consensus 84 l~Dt~~vls~y-~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-----l~g~~v~~vGd 156 (304)
T TIGR00658 84 IKDTARVLSRY-VDGIMARVYK-HEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGK-----LKGVKVVYVGD 156 (304)
T ss_pred HHHHHHHHHHh-CCEEEEECCC-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEEeC
Confidence 55666778888 9999998764 777889999999999997431 1111 222 121 13458999996
Q ss_pred h-hhhchhhHHHHHHhcCCeEEecC
Q 020005 224 N-AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 224 ~-~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
. .|..|-+ ..+...|+++.+..
T Consensus 157 ~~~v~~Sl~--~~l~~~g~~v~~~~ 179 (304)
T TIGR00658 157 GNNVCNSLM--LAGAKLGMDVVVAT 179 (304)
T ss_pred CCchHHHHH--HHHHHcCCEEEEEC
Confidence 3 3444333 46777898887633
No 258
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=53.22 E-value=1.2e+02 Score=28.05 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh---HHHHhh-hCCCC---eeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIW---HDEVCK-GCSVP---FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL 227 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~-~~~iP---ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~ 227 (332)
.+.+++|++.|..++++.-||.... .+.+++ .++++ |+.-..+++.++++.+. .++|-++|+.+.
T Consensus 23 ~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~~-------~~~v~~lg~~~l- 94 (249)
T TIGR01457 23 ETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLKL-------EKTVYVIGEEGL- 94 (249)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcCC-------CCEEEEEcChhH-
Confidence 4566789999998888877674443 233333 12344 77777888888887532 248999999643
Q ss_pred chhhHHHHHHhcCCeE
Q 020005 228 TAGFYQEKLQHEGFEV 243 (332)
Q Consensus 228 ~s~lY~~~l~~~Gi~v 243 (332)
.+.++.+|+++
T Consensus 95 -----~~~l~~~g~~~ 105 (249)
T TIGR01457 95 -----KEAIKEAGYVE 105 (249)
T ss_pred -----HHHHHHcCCEe
Confidence 35567778764
No 259
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=53.14 E-value=27 Score=33.50 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++.|+|+++++.-|+|-.|.
T Consensus 157 ~a~~Fv~~TgvD~LAvaiGt~HG~Y~ 182 (283)
T PRK07998 157 KVKDFVERTGCDMLAVSIGNVHGLED 182 (283)
T ss_pred HHHHHHHHhCcCeeehhccccccCCC
Confidence 34567788999999999999998874
No 260
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=53.09 E-value=36 Score=27.51 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHh---hhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVC---KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~---~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
.+.++.|....+.+|+|+.|+.--.-++|+ +..++||+.- +-+--++-..--|| -+||.|+-
T Consensus 25 k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y-~Gt~~eLG~~cgkp------f~v~~laI 89 (100)
T COG1911 25 KRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVY-EGTSVELGTVCGKP------FRVAALAI 89 (100)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEe-cCCceeHHhhhCCC------ceEEEEEE
Confidence 345677888889999999999776655554 3458998874 32322332222222 27888875
No 261
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.04 E-value=51 Score=33.07 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=50.0
Q ss_pred cCCcEEEEeCCCc--hhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHLS--HIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNTa--H~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|++|++-.-. |+.+...++ -++|+++=.+...+.+++.+. +.|||-||.| |-.+.+....|+..|
T Consensus 66 ~~~d~vv~spgi~~~~p~~~~a~~-~~i~v~~~~~~~~~~~~~~~~--------~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 66 NGFDILALSPGISERQPDIEAFKQ-NGGRVLGDIELLADIVNRRGD--------KVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred hCCCEEEECCCCCCCCHHHHHHHH-cCCcEEEhHHHHHHhhhcCCC--------CEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 3689888866553 666666654 589999988877655543212 2899999988 445667788888877
Q ss_pred CeEE
Q 020005 241 FEVV 244 (332)
Q Consensus 241 i~vv 244 (332)
..+.
T Consensus 137 ~~~~ 140 (445)
T PRK04308 137 LDTV 140 (445)
T ss_pred CCeE
Confidence 7643
No 262
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.87 E-value=1.8e+02 Score=26.49 Aligned_cols=78 Identities=13% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeech-------------------------HHHHHHHHHh--c
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS-------------------------ECVAKELKEA--N 206 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~Iv-------------------------e~t~~~l~~~--g 206 (332)
.++.|.+.++|.|++.....+ ..+..+++ .++|++-+- ..+++++.+. |
T Consensus 48 ~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~-~~iPvV~~d~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G 126 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDAAELQAELELAQK-AGIPVVGWHAGPEPGPIEEPGIFYNVTTDPLAVAEVAALYAIANSGG 126 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCceeEEecCCHHHHHHHHHHHHHHHcCC
Confidence 345677889998888644333 33444543 456654431 2344556666 4
Q ss_pred CCCCcCCCCceEEEEechhhhc----hhhHHHHHHhc-CCeE
Q 020005 207 MKPLEAGSPLRIGVLAKNAILT----AGFYQEKLQHE-GFEV 243 (332)
Q Consensus 207 ~k~~~~~~~~rVGlLaT~~T~~----s~lY~~~l~~~-Gi~v 243 (332)
.+ +|++++.+.... ...|+..++.. +..+
T Consensus 127 ~~--------~i~~i~~~~~~~~~~r~~~~~~~~~a~~~~~~ 160 (280)
T cd06315 127 KA--------GVVIFTDSRFSIAKAKANAMKEIIEACKGCTV 160 (280)
T ss_pred Cc--------eEEEEeCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 43 899997543311 23566666554 4443
No 263
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=52.81 E-value=1.8e+02 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHhCCC--CEEEECCCCcccCCCCCCCCCCc-eec-hHHHHHHHHHHHHHhh
Q 020005 276 IALQVLLVRAV--NTVILASDDMQDLLPPDDPLLKK-CID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 276 ~~~~~L~~~ga--d~VILGCTElpli~~~~~~~~ip-vID-~~~~lA~a~v~~a~~~ 328 (332)
.+++.+.+.|- |..|.|....+..........+. .|+ +...+++.+++...+.
T Consensus 199 g~~~al~~~g~~~di~Ivg~d~~~~~~~~i~~~~l~~tv~~~~~~~g~~a~~~l~~~ 255 (275)
T cd06307 199 GVIRALREAGRAGKVVFVGHELTPETRAALRDGTIDAVIDQDPGHLARSAVRVLLAA 255 (275)
T ss_pred HHHHHHHHcCCCCCcEEEEecCChHHHHHHHcCeeEEEEEcCHHHHHHHHHHHHHHH
Confidence 45555666554 78888888887665321111221 233 4456777777665443
No 264
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=52.67 E-value=33 Score=33.58 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++.-|+|-.|.
T Consensus 168 eA~~Fv~~TgvD~LAvaiGt~HG~Y~ 193 (321)
T PRK07084 168 EVEDFVKKTGVDSLAISIGTSHGAYK 193 (321)
T ss_pred HHHHHHHHhCCCEEeecccccccccc
Confidence 44567778899999999999998875
No 265
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=52.30 E-value=1.5e+02 Score=28.03 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhCCCCeee---c-hHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH---V-SECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~~iPii~---I-ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+.++..+++||++|-+-|-.-++ .+..+++.+++|++. | -+--+.+++..|.. -|.|++.--.
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD--------aVLLI~~~L~ 143 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD--------AVLLIAAILS 143 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S--------EEEEEGGGSG
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC--------EeehhHHhCC
Confidence 44567889999999999887333 245666788999875 2 23344556666764 5666554322
Q ss_pred hch-hhHHHHHHhcCCeEEe
Q 020005 227 LTA-GFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~~s-~lY~~~l~~~Gi~vv~ 245 (332)
-.. .-+-+.....|+++++
T Consensus 144 ~~~l~~l~~~a~~lGle~lV 163 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALV 163 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCeEE
Confidence 221 2223344566999876
No 266
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=52.20 E-value=24 Score=32.96 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=55.1
Q ss_pred cchhhhccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 73 SDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 73 ~~~~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
|.-|+.--.+||++=+.-+.+.++|+.+|-+... -+++-|. .|.. .++.++.++
T Consensus 70 P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~---P~~L~iE--------------gP~d---------~g~r~~QI~ 123 (248)
T PF07476_consen 70 PVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAA---PFKLRIE--------------GPMD---------AGSREAQIE 123 (248)
T ss_dssp -EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHT---TS-EEEE---------------SB-----------SSHHHHHH
T ss_pred ccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcC---CCeeeee--------------CCcC---------CCChHHHHH
Confidence 3333333345555556678888888888876652 2233332 2222 235566677
Q ss_pred HHHHHHHHHHHcCCcEEEEe---CCCchhhHHHHhh------hCCCCeeechHHHHHHHHH
Q 020005 153 NLRRKRVFLEKAGARCIVMP---CHLSHIWHDEVCK------GCSVPFLHVSECVAKELKE 204 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~---CNTaH~~~d~l~~------~~~iPii~Ive~t~~~l~~ 204 (332)
.+.+..+.|.+.|+++=+++ |||.--.-+-..+ ++..|=++=+..+++++.-
T Consensus 124 ~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvly 184 (248)
T PF07476_consen 124 ALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLY 184 (248)
T ss_dssp HHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHH
Confidence 78888899999999999998 9984433211111 1235555555555555443
No 267
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=52.12 E-value=72 Score=30.67 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHHcCCcEEEEeCCC---chhh---HHHHhhhCCCCeeech---------------------HHHHHHHHHhcCCCC
Q 020005 158 RVFLEKAGARCIVMPCHL---SHIW---HDEVCKGCSVPFLHVS---------------------ECVAKELKEANMKPL 210 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT---aH~~---~d~l~~~~~iPii~Iv---------------------e~t~~~l~~~g~k~~ 210 (332)
++.+.+.|.+...+-..+ -|-. +.-+....++|+|.|. +++.+.+.+.
T Consensus 105 ~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~al~~~----- 179 (294)
T cd07372 105 CEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREAIRKT----- 179 (294)
T ss_pred HHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCCHHHHHHHHHHHHHHHHhc-----
Confidence 356778999887533332 3433 4556666789999552 2222334433
Q ss_pred cCCCCceEEEEechhhhchhhHHHH-HHhcCCeEEec---CccchhhchHHHHHHHhcCChHHHHHHHHHH
Q 020005 211 EAGSPLRIGVLAKNAILTAGFYQEK-LQHEGFEVVLP---DKATMEHTLIPALDALNRKDVEGARNLLRIA 277 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T~~s~lY~~~-l~~~Gi~vv~P---~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~ 277 (332)
.+||+|+|+-+... .++.+. =..+|...+.| ..+.-++.+ ++.+++|+.++..+...+.
T Consensus 180 ----~~RV~vIaSG~LSH-~l~~~~~~~p~~~~~~~~~~~~~~~fD~~v---l~~l~~gd~~~l~~~~~~~ 242 (294)
T cd07372 180 ----GRRAVLLASNTLSH-WHFHEEPAPPEDMSKEHPETYAGYQWDMRM---IELMRQGRMKEVFRLLPQF 242 (294)
T ss_pred ----CCeEEEEEeCcccc-cCccCCCCCccccccccccchhHHHHHHHH---HHHHHcCCHHHHHhcCHHH
Confidence 24999999955433 322211 11223433333 112222223 5788889986644444433
No 268
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=52.01 E-value=61 Score=30.79 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee-------echHHHHHHHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL-------HVSECVAKELKE 204 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii-------~Ive~t~~~l~~ 204 (332)
+.++..++.|||++++..-..+. +|.+|.+.+++|++ .+-..+...+.+
T Consensus 85 ~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 85 AYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 45567888999988775443321 46777777777754 344445555543
No 269
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=51.98 E-value=70 Score=29.58 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCeeech----HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFLHVS----ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+++.|++.|.+.--++.. .+.++.+.+++|++--. ...++.+...|.. +| ++||
T Consensus 34 ~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~--------~V-iigt 104 (253)
T PRK02083 34 ELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD--------KV-SINS 104 (253)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC--------EE-EECh
Confidence 34566789999988887666532 46778888889987532 2333444445543 44 8888
Q ss_pred hhhhchhhHHHHHHhcC
Q 020005 224 NAILTAGFYQEKLQHEG 240 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~G 240 (332)
..-....++.+..+.+|
T Consensus 105 ~~l~~p~~~~ei~~~~g 121 (253)
T PRK02083 105 AAVANPELISEAADRFG 121 (253)
T ss_pred hHhhCcHHHHHHHHHcC
Confidence 66556677777777765
No 270
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=51.96 E-value=20 Score=34.71 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH--------HHH--HHHHh-cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC--------VAK--ELKEA-NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~--------t~~--~l~~~-g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|...|+|+|++=.. .|.++.++.+.+++||||..+- .+. .+.+. |. -.+.||+++|
T Consensus 90 ~~Dta~vls~y~~D~iv~R~~-~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~-----l~g~kv~~vG 163 (305)
T PRK00856 90 LADTIRTLSAMGADAIVIRHP-QSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFGR-----LEGLKVAIVG 163 (305)
T ss_pred HHHHHHHHHhcCCCEEEEeCC-ChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEEC
Confidence 566678899999999999976 4888899999999999999651 111 12221 21 1245899998
Q ss_pred ch---hhhchhhHHHHHHhcCCeEEec
Q 020005 223 KN---AILTAGFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 223 T~---~T~~s~lY~~~l~~~Gi~vv~P 246 (332)
=- .|..|- -..+...|+++++.
T Consensus 164 D~~~~~v~~Sl--~~~~~~~g~~~~~~ 188 (305)
T PRK00856 164 DIKHSRVARSN--IQALTRLGAEVRLI 188 (305)
T ss_pred CCCCCcHHHHH--HHHHHHcCCEEEEE
Confidence 52 344433 34677789888763
No 271
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=51.91 E-value=2.3e+02 Score=27.25 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCH 174 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CN 174 (332)
+.+.+.+.++.+.++|||.|.++=-
T Consensus 175 it~~~~~~~~~~ieaGad~i~i~d~ 199 (335)
T cd00717 175 LTDATIEYLKAQIEAGAQAVQIFDS 199 (335)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 4444555566666789999987643
No 272
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=51.45 E-value=2.3e+02 Score=27.22 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=44.7
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCCCc
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~~~ 211 (332)
+.+.+.|+++|+=|..+.... ...+.+..++|+|+. .++.++.++..+.
T Consensus 62 ~l~~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~---- 137 (389)
T cd06352 62 DLYWEHNVDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNW---- 137 (389)
T ss_pred HHHhhcCCcEEECCCChhHHHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCc----
Confidence 344567888888776664433 445666677887752 1122333333332
Q ss_pred CCCCceEEEEechhh----hchhhHHHHHHhcCCeEE
Q 020005 212 AGSPLRIGVLAKNAI----LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~vv 244 (332)
+++.++..... -...-+++.+++.|++++
T Consensus 138 ----~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~ 170 (389)
T cd06352 138 ----HVAVVVYSDDSENCFFTLEALEAALREFNLTVS 170 (389)
T ss_pred ----eEEEEEEecCCccHHHHHHHHHHHHHhcCCeEE
Confidence 37888765332 223345667777788875
No 273
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=51.36 E-value=1.8e+02 Score=26.05 Aligned_cols=160 Identities=11% Similarity=0.148 Sum_probs=79.6
Q ss_pred HHHHHHHcCCcEEEEeCCCc-----h-hhHHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLS-----H-IWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLE 211 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa-----H-~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~ 211 (332)
.++.|.+.++|.|++.-.+. + .+++++. ..++|++-+- ..+++++.+.|.+
T Consensus 47 ~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~-~~~ipvV~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~G~~--- 122 (273)
T cd01541 47 CLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLE-KLGIPYVFINASYEELNFPSLVLDDEKGGYKATEYLIELGHR--- 122 (273)
T ss_pred HHHHHHHcCCCEEEEeccccccccccHHHHHHHH-HCCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHcCCc---
Confidence 34557788999988743221 1 3345553 3366766431 3445666666654
Q ss_pred CCCCceEEEEechh----hhchhhHHHHHHhcCCeE----Eec-C-ccchhhchHHHHHH-HhcC-ChHH----HHHHHH
Q 020005 212 AGSPLRIGVLAKNA----ILTAGFYQEKLQHEGFEV----VLP-D-KATMEHTLIPALDA-LNRK-DVEG----ARNLLR 275 (332)
Q Consensus 212 ~~~~~rVGlLaT~~----T~~s~lY~~~l~~~Gi~v----v~P-~-~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~ 275 (332)
+|++++... ..+..-|.+.++++|+++ +.. . ....+. ....++. ++++ +.+. ......
T Consensus 123 -----~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~av~~~~d~~a~ 196 (273)
T cd01541 123 -----KIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSNVITYTTEEKEEK-LFEKIKEILKRPERPTAIVCYNDEIAL 196 (273)
T ss_pred -----CEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHHEEeccccchhhH-HHHHHHHHHcCCCCCCEEEEcCcHHHH
Confidence 898876432 222233777888888642 111 1 111110 1112222 3332 2221 122233
Q ss_pred HHHHHHHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 276 IALQVLLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 276 ~~~~~L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+++.+.+.|. |.-|.|.-..+..... .+ .+..|+ +...+++.+++.....
T Consensus 197 g~~~al~~~g~~~p~dv~vvg~d~~~~~~~~-~~-~~t~i~~~~~~~g~~a~~~l~~~ 252 (273)
T cd01541 197 RVIDLLKELGLKIPEDISVVGFDDSYLSVAS-EV-KLTTVTHPKEQMGEDAAKMILKM 252 (273)
T ss_pred HHHHHHHHcCCCCCCcEEEEEcCCcchhhhc-cC-cceEEecCHHHHHHHHHHHHHHH
Confidence 34555666553 6777777666644311 11 234554 4456777777776554
No 274
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=51.28 E-value=57 Score=31.89 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=71.8
Q ss_pred ccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCch-hhcccc-CCCCCCCHH-HHHHHH
Q 020005 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSF-SSLNCK-GGGVQLDDS-LIVENL 154 (332)
Q Consensus 79 ~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~-~~~~~~-~~~~~~d~~-~i~~~l 154 (332)
.+..|+||| |+=.++|+....++...... ..+.+.+++|--.++-.-......+ +..... ......+|. ..++++
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~i-p~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l 80 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLI-PVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL 80 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccC-CcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence 467899999 99899999877776532211 2344555554333321100001100 000000 001122343 334444
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh--hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI--WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFY 232 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~--~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY 232 (332)
....+.=+.--+-+-.++|.-..- -.++-+...+-=|.+--+.+-+++. +. |. .-+-|+-.|..+.+...|
T Consensus 81 ~~l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~--~f-~~----~~~~G~~~Tt~~sE~~~y 153 (342)
T KOG3923|consen 81 AHLARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELL--GF-PD----YSTYGIHFTTYLSEGPKY 153 (342)
T ss_pred HHHhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhc--CC-CC----ccccceeEEEeeccchhh
Confidence 443331111123334445532221 1222222222122333333334444 22 11 126799999999998877
Q ss_pred HHH----HHhcCCeEEe
Q 020005 233 QEK----LQHEGFEVVL 245 (332)
Q Consensus 233 ~~~----l~~~Gi~vv~ 245 (332)
-.. |.+.|++++.
T Consensus 154 lpyl~k~l~e~Gvef~~ 170 (342)
T KOG3923|consen 154 LPYLKKRLTENGVEFVQ 170 (342)
T ss_pred hHHHHHHHHhcCcEEEE
Confidence 655 4455887754
No 275
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=51.16 E-value=1.3e+02 Score=27.06 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEeC--CCchh------hHHHHhhhCCCCee---echH-HHHHHHHHhcCCCCcCCCCceEEEE
Q 020005 154 LRRKRVFLEKAGARCIVMPC--HLSHI------WHDEVCKGCSVPFL---HVSE-CVAKELKEANMKPLEAGSPLRIGVL 221 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~C--NTaH~------~~d~l~~~~~iPii---~Ive-~t~~~l~~~g~k~~~~~~~~rVGlL 221 (332)
..+.++.+++.|++.+.+.. .+.-. .+.++.+.+++|++ +|-. +-++.+.+.|.. +| ++
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~--------~v-il 102 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVS--------RV-II 102 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCC--------EE-EE
Q ss_pred echhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHh------cCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 222 AKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALN------RKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 222 aT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik------~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
+|..--...++.+..+.++-.++++ + .++ .|..+.......+.++.+.+.|++.|++
T Consensus 103 g~~~l~~~~~l~ei~~~~~~~i~vs--------i-----d~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~ 165 (233)
T PRK00748 103 GTAAVKNPELVKEACKKFPGKIVVG--------L-----DARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIY 165 (233)
T ss_pred CchHHhCHHHHHHHHHHhCCCceee--------e-----eccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEE
No 276
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=50.91 E-value=61 Score=31.00 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHcCCcEEEEeCCCchhhH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWH 180 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~ 180 (332)
.++.++.|+|+++++--|.|..+
T Consensus 159 ~~f~~~tg~DyLAvaiG~~hg~~ 181 (281)
T PRK06806 159 KRFAEETDVDALAVAIGNAHGMY 181 (281)
T ss_pred HHHHHhhCCCEEEEccCCCCCCC
Confidence 34455679999999988888854
No 277
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=50.83 E-value=49 Score=30.27 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=63.9
Q ss_pred HHHHHHHcCCcEEEEeCC-CchhhHHHHh------hhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 157 KRVFLEKAGARCIVMPCH-LSHIWHDEVC------KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CN-TaH~~~d~l~------~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
.++.|.+.|.|++.++-| +..+-.+.+. +..+++.++.-....+ ..+--.. .-...|||++|-......
T Consensus 65 ~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~~-~~~~~i~---~~~g~kIg~ig~t~~~~~ 140 (239)
T smart00854 65 NAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLAE-ARKPAIV---EVKGIKIALLAYTYGTNN 140 (239)
T ss_pred HHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChHH-hhCcEEE---EECCEEEEEEEEEcCCCC
Confidence 346788999999999976 2222123322 2447888876432211 1110000 012348999995332211
Q ss_pred hhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcC-Ch---------H---HHHHHHHHHHHHHHhCCCCEEEECCCCc
Q 020005 230 GFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRK-DV---------E---GARNLLRIALQVLLVRAVNTVILASDDM 296 (332)
Q Consensus 230 ~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g-~~---------~---~a~~~l~~~~~~L~~~gad~VILGCTEl 296 (332)
++.. .-...|+....+... + .+...+++++.+ ++ + ......+++++.+.+.|+|+||-|=+|.
T Consensus 141 ~~~~-~~~~~g~~~~~~~~~--~-~i~~~i~~lr~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~ 216 (239)
T smart00854 141 GWAA-SKDRPGVALLPDLDR--E-KILADIARARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHV 216 (239)
T ss_pred Cccc-CCCCCCeeecCcCCH--H-HHHHHHHHHhccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCc
Confidence 2111 001123333222111 0 122223444432 10 0 0112345666777788999999888886
Q ss_pred c
Q 020005 297 Q 297 (332)
Q Consensus 297 p 297 (332)
.
T Consensus 217 ~ 217 (239)
T smart00854 217 L 217 (239)
T ss_pred C
Confidence 5
No 278
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=50.82 E-value=71 Score=31.57 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHH---HHHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv~ 245 (332)
++...+.+++.|.+ |+.|++.+...+.+++++ .|++.|+++.+
T Consensus 18 l~~l~~~~~~~g~~--------~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~ 63 (382)
T PRK10624 18 IGALTDEVKRRGFK--------KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEI 63 (382)
T ss_pred HHHHHHHHHhcCCC--------EEEEEeCcchhhCcchHHHHHHHHHCCCeEEE
Confidence 44455555655443 888888777777777764 56667877643
No 279
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=50.66 E-value=1.8e+02 Score=28.57 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|++=++. |..+.++.+.+++||||... +.++. +++. |.+. -.+.+|+++|-
T Consensus 90 l~Dtarvls~y-~D~Iv~R~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~---l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVLGRM-YDGIQYRGYG-QEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKA---FNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHHHHh-CcEEEEEeCC-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCC---cCCCEEEEeCC
Confidence 45566778888 8999999875 88889999999999999743 12211 2222 1000 12358999995
Q ss_pred h--hhhchhhHHHHHHhcCCeEEe
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
. .+..|-+ ..+...|+++.+
T Consensus 165 ~~~~v~~Sl~--~~~~~~g~~v~~ 186 (336)
T PRK03515 165 ARNNMGNSLL--EAAALTGLDLRL 186 (336)
T ss_pred CcCcHHHHHH--HHHHHcCCEEEE
Confidence 2 3444333 356677888765
No 280
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=50.23 E-value=28 Score=34.52 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhhh-----CCCCee
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW--HDEVCKG-----CSVPFL 192 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~-----~~iPii 192 (332)
+.|.+.-++. ++.|+++|||.+=+++++.... +.+|++. +++|++
T Consensus 27 t~Dv~atv~Q----I~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlV 78 (359)
T PF04551_consen 27 TRDVEATVAQ----IKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLV 78 (359)
T ss_dssp TT-HHHHHHH----HHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EE
T ss_pred cccHHHHHHH----HHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCee
Confidence 3454444333 4579999999999999997765 7899999 999986
No 281
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=50.22 E-value=52 Score=30.54 Aligned_cols=38 Identities=24% Similarity=0.015 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhC-CCCeee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPFLH 193 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~-~iPii~ 193 (332)
+.++.|.+.|+|+|+..-+.....+.++.+.. ++.|+.
T Consensus 48 ~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 48 RVLRELAAQGYDLIFGTSFGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred HHHHHHHHcCCCEEEECchhhhHHHHHHHHHCCCCEEEE
Confidence 34556778899999986655555555555443 344444
No 282
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=50.08 E-value=2e+02 Score=28.31 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|... +|+|++=+.. |..+.++.+.+++||||... +.++. +.+. |.+. -.+.+|+++|-
T Consensus 90 l~Dtarvls~y-~D~iviR~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~---l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVLGRM-YDGIQYRGHG-QEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKA---FNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHHHHh-CCEEEEECCc-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCC---cCCcEEEEECC
Confidence 55667788888 9999999874 77889999999999999743 22211 2222 1000 12358999995
Q ss_pred h--hhhchhhHHHHHHhcCCeEEe
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
. .+..|-+ ..+...|+++.+
T Consensus 165 ~~~~v~~S~~--~~~~~~G~~v~~ 186 (334)
T PRK12562 165 ARNNMGNSML--EAAALTGLDLRL 186 (334)
T ss_pred CCCCHHHHHH--HHHHHcCCEEEE
Confidence 2 3444433 346677988765
No 283
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.85 E-value=51 Score=28.49 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=45.9
Q ss_pred hhchhhHHHHHHhcCCeEEecCc-cchhhchHHHHHHHhcC-C-------hHHHHHHHHHHHHHHHhCCCCEEE-ECCCC
Q 020005 226 ILTAGFYQEKLQHEGFEVVLPDK-ATMEHTLIPALDALNRK-D-------VEGARNLLRIALQVLLVRAVNTVI-LASDD 295 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv~P~~-~~q~~~l~~~i~~ik~g-~-------~~~a~~~l~~~~~~L~~~gad~VI-LGCTE 295 (332)
.....+..+.|++.|++|+.+.- ..+++.+.. +++.. + .......+..+++.|.+.|++-|+ ++--.
T Consensus 26 d~gakvia~~l~d~GfeVi~~g~~~tp~e~v~a---A~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 26 DRGAKVIARALADAGFEVINLGLFQTPEEAVRA---AVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred ccchHHHHHHHHhCCceEEecCCcCCHHHHHHH---HHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 35578889999999999998543 223332222 22221 1 112467888899999999987777 77777
Q ss_pred ccc
Q 020005 296 MQD 298 (332)
Q Consensus 296 lpl 298 (332)
+|.
T Consensus 103 ip~ 105 (143)
T COG2185 103 IPP 105 (143)
T ss_pred cCc
Confidence 774
No 284
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.69 E-value=2e+02 Score=25.93 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCC--CEEEECCCCcccCCCCC--CCCCCceechHHHHHHHHHHHHHhh
Q 020005 275 RIALQVLLVRAV--NTVILASDDMQDLLPPD--DPLLKKCIDPMDALARSTIKWVKSA 328 (332)
Q Consensus 275 ~~~~~~L~~~ga--d~VILGCTElpli~~~~--~~~~ipvID~~~~lA~a~v~~a~~~ 328 (332)
..+++.+.+.|. |.-|.|....+...... .+....+.-+.+.+++.+++.....
T Consensus 203 ~g~~~al~~~g~~~dv~vvg~d~~~~~~~~~~~~~~~~tv~~~~~~~g~~a~~~l~~~ 260 (282)
T cd06318 203 LGAMRVLAEAGKTDDVKVAAADGQKEALALIKGGKYGATALNDPDLVARTAVEVAVKV 260 (282)
T ss_pred HHHHHHHHHcCCCCCeEEEecCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHHHH
Confidence 344455665553 77788877766542110 0111122223467777777776554
No 285
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.67 E-value=33 Score=31.74 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCeeechHHHHHH-HHHhcC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKE-LKEANM 207 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~Ive~t~~~-l~~~g~ 207 (332)
+.++.+..-++|+|.|.|--.-.+ ++.|.+..++||++-=.++.=. ++..|.
T Consensus 170 ~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~AT~W~~Lr~~g~ 224 (238)
T COG3473 170 RLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQATLWMALRLIGL 224 (238)
T ss_pred HHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccHHHHHHHHHHcCC
Confidence 345677789999999999877666 7999999999999987777644 444454
No 286
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=49.48 E-value=88 Score=30.12 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=81.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEec--hhhhchhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAK--NAILTAGF 231 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT--~~T~~s~l 231 (332)
-.++.|+.+|+|.++.-- .|. ..++..+++|+.++ ....++.+.+...+ .+-++|. .+......
T Consensus 109 ~~a~ll~~~g~d~vit~D--lHs--~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~--------~~viv~pd~g~~~~A~~ 176 (308)
T TIGR01251 109 LVANLLETAGADRVLTVD--LHS--PQIQGFFDVPVDNLYASPVLAEYLKKKILD--------NPVVVSPDAGGVERAKK 176 (308)
T ss_pred HHHHHHHHcCCCEEEEec--CCh--HHhcCcCCCceecccCHHHHHHHHHhhCCC--------CCEEEEECCchHHHHHH
Confidence 346778899999765422 353 56777788887665 34566666654222 3445544 23333333
Q ss_pred HHHHHHhcCCeEEecCccch----hhchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCC--ccc-
Q 020005 232 YQEKLQHEGFEVVLPDKATM----EHTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDD--MQD- 298 (332)
Q Consensus 232 Y~~~l~~~Gi~vv~P~~~~q----~~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTE--lpl- 298 (332)
+.+.+ |..+........ +.........++...+ + .....+..+++.|++.|+..|++.||| ++-
T Consensus 177 lA~~L---g~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~ 253 (308)
T TIGR01251 177 VADAL---GCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGP 253 (308)
T ss_pred HHHHh---CCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcH
Confidence 44433 443332111000 0001111112221111 1 134577888888999999999999998 331
Q ss_pred ----CCCC-C------CC-------CCCceechHHHHHHHHHHH
Q 020005 299 ----LLPP-D------DP-------LLKKCIDPMDALARSTIKW 324 (332)
Q Consensus 299 ----i~~~-~------~~-------~~ipvID~~~~lA~a~v~~ 324 (332)
+.+. . +. ..+..+|....+|+++.+.
T Consensus 254 a~~~l~~~~~~~iv~tdt~~~~~~~~~~~~v~va~~la~~i~~~ 297 (308)
T TIGR01251 254 AIERIANAGVEEVIVTNTIPHEKHKPKVSVISVAPLIAEAIRRI 297 (308)
T ss_pred HHHHHHhCCCCEEEEeCCCCccccCCCcEEEEhHHHHHHHHHHH
Confidence 1111 0 11 1245789999999887554
No 287
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=49.45 E-value=40 Score=27.53 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLS 176 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTa 176 (332)
+...+++|.+.|+|+|-++.-+.
T Consensus 54 ~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 54 LVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred HHHHHHHHHHCCCCEEEEcCCEe
Confidence 44556788899999998865543
No 288
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=49.18 E-value=1.3e+02 Score=28.17 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=12.7
Q ss_pred HHHHHhCCCCEEEECCC
Q 020005 278 LQVLLVRAVNTVILASD 294 (332)
Q Consensus 278 ~~~L~~~gad~VILGCT 294 (332)
++.+.+.|||.||.|..
T Consensus 213 ~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 213 VKQAIDAGADGVIVGSA 229 (256)
T ss_pred HHHHHHcCCCEEEECHH
Confidence 34566789999999854
No 289
>PRK09234 fbiC FO synthase; Reviewed
Probab=48.77 E-value=87 Score=34.72 Aligned_cols=103 Identities=18% Similarity=0.079 Sum_probs=62.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
..+.|.||..|.-..++|..+++...+. .++.+..+|-.++.--....|.+ ..+.++
T Consensus 575 tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~----------------------~~e~l~ 632 (843)
T PRK09234 575 TEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLS----------------------IREWLT 632 (843)
T ss_pred CEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCC----------------------HHHHHH
Confidence 5689999999988999999999888776 45555555532322100000110 234556
Q ss_pred HHHHcCCcEEEEeCCCchhhH-HHHhhhCCCCeeech--HHHHHHHHHhcCC
Q 020005 160 FLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVS--ECVAKELKEANMK 208 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~-d~l~~~~~iPii~Iv--e~t~~~l~~~g~k 208 (332)
.|.++|+|-+ | .|+.-++ +++++.+.=..++-- -.+++.+++.|++
T Consensus 633 ~LkeAGLds~--p-gt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~ 681 (843)
T PRK09234 633 ALREAGLDTI--P-GTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLR 681 (843)
T ss_pred HHHHhCcCcc--C-CCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 7999999976 3 5656554 667765431122211 2556677777774
No 290
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=48.71 E-value=37 Score=32.64 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCe-eechHHHHHHHHHh-cCCCCcCCCCceEEEEechhhhchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF-LHVSECVAKELKEA-NMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPi-i~Ive~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T~~s~lY~ 233 (332)
++.++.++-|+|+++++.-|+|-.|.. -|. |++ + ..+++++. +. ...+=|+.|+-... ++
T Consensus 162 ea~~Fv~~TgvD~LAvaiGt~HG~y~~------~p~~Ld~-~-~L~~I~~~v~v---------PLVlHGgSG~~~e~-~~ 223 (288)
T TIGR00167 162 EAKEFVKLTGVDSLAAAIGNVHGVYKG------EPKGLDF-E-RLEEIQKYVNL---------PLVLHGGSGIPDEE-IK 223 (288)
T ss_pred HHHHHHhccCCcEEeeccCccccccCC------CCCccCH-H-HHHHHHHHhCC---------CEEEeCCCCCCHHH-HH
Confidence 445677889999999999999998753 244 443 2 22344432 11 35666777775544 55
Q ss_pred HHHHhcCCeEE
Q 020005 234 EKLQHEGFEVV 244 (332)
Q Consensus 234 ~~l~~~Gi~vv 244 (332)
+.. +.|+.=+
T Consensus 224 ~ai-~~Gi~Ki 233 (288)
T TIGR00167 224 KAI-SLGVVKV 233 (288)
T ss_pred HHH-HcCCeEE
Confidence 543 4576433
No 291
>PLN02489 homocysteine S-methyltransferase
Probab=48.55 E-value=2.7e+02 Score=27.20 Aligned_cols=136 Identities=10% Similarity=0.070 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCch----hhHHHHhhhC-CCCe-eec-------------hHHHHHHHHHh
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSH----IWHDEVCKGC-SVPF-LHV-------------SECVAKELKEA 205 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH----~~~d~l~~~~-~iPi-i~I-------------ve~t~~~l~~~ 205 (332)
.+.+++.+.....++.|.+.|+|+|++=+.... ...+.+++.. ++|+ +++ ++.+++.+.+.
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~ 239 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSC 239 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhc
Confidence 356788888888899999999999999877633 2355555443 4675 222 22333343321
Q ss_pred cCCCCcCCCCceEEEEechhhhchhhHHHHHHhc-CCeE-EecCccchhhchHHHHHHHhcCC---hHHHHHHHHHHHHH
Q 020005 206 NMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-GFEV-VLPDKATMEHTLIPALDALNRKD---VEGARNLLRIALQV 280 (332)
Q Consensus 206 g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~v-v~P~~~~q~~~l~~~i~~ik~g~---~~~a~~~l~~~~~~ 280 (332)
. ..--||+=.|....-..+.++. ... ...+ ++|+.-.. ++....+. .+...+.+.+.+.+
T Consensus 240 -~------~~~~iGiNC~~p~~~~~~l~~l-~~~~~~pl~vyPNaG~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (335)
T PLN02489 240 -K------KVVAVGINCTPPRFIHGLILSI-RKVTSKPIVVYPNSGET-------YDGEAKEWVESTGVSDEDFVSYVNK 304 (335)
T ss_pred -C------CceEEEecCCCHHHHHHHHHHH-HhhcCCcEEEECCCCCC-------CCCccCcccCCCCCCHHHHHHHHHH
Confidence 0 0113666666444333444332 332 3333 45775311 11111110 11123457777778
Q ss_pred HHhCCCCEEEECCCCc
Q 020005 281 LLVRAVNTVILASDDM 296 (332)
Q Consensus 281 L~~~gad~VILGCTEl 296 (332)
+.+.|+ .||=||=.-
T Consensus 305 ~~~~Ga-~iIGGCCgt 319 (335)
T PLN02489 305 WRDAGA-SLIGGCCRT 319 (335)
T ss_pred HHHCCC-cEEeeCCCC
Confidence 888898 689999664
No 292
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=48.17 E-value=66 Score=31.74 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHh---hhCCCCeee---------chHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIW-HDEVC---KGCSVPFLH---------VSECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~---~~~~iPii~---------Ive~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
+...+.+|.+.|-.+++.+|-|.-+. .++|+ ++.++|+|. ++--++++++++++ -|.+
T Consensus 156 IaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~---------Dvvl 226 (340)
T COG0552 156 IAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGI---------DVVL 226 (340)
T ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCC---------CEEE
Confidence 45567899999999999999998876 56665 567899998 34445566666665 3888
Q ss_pred Eechhhhchh
Q 020005 221 LAKNAILTAG 230 (332)
Q Consensus 221 LaT~~T~~s~ 230 (332)
+=|.|-++..
T Consensus 227 iDTAGRLhnk 236 (340)
T COG0552 227 IDTAGRLHNK 236 (340)
T ss_pred EeCcccccCc
Confidence 8888877643
No 293
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.85 E-value=2.1e+02 Score=25.72 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=78.5
Q ss_pred HHHHHHHcCCcEEEEeCCCc---hhhHHHHhhhCCCCeeech-----------------------HHHHHHHHHhcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHVS-----------------------ECVAKELKEANMKPL 210 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa---H~~~d~l~~~~~iPii~Iv-----------------------e~t~~~l~~~g~k~~ 210 (332)
.++.|.+.++|.|++..... ...+.++.+ .++|++.+- ..+++.+.+..
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~-~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~---- 121 (273)
T cd06309 47 AIRSFIAQGVDVIILAPVVETGWDPVLKEAKA-AGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKAT---- 121 (273)
T ss_pred HHHHHHHcCCCEEEEcCCccccchHHHHHHHH-CCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHHc----
Confidence 34557778899887744332 234445443 355554332 12345555541
Q ss_pred cCCCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHH-HHHhcC--ChHH----HHHHHH
Q 020005 211 EAGSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPAL-DALNRK--DVEG----ARNLLR 275 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i-~~ik~g--~~~~----a~~~l~ 275 (332)
.+.++|++++.... .+..-|.+.++++ +++++. -.....+. ....+ +.++.+ +.+. ......
T Consensus 122 --~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~aI~~~~d~~a~ 198 (273)
T cd06309 122 --GGKGNIVELQGTVGSSVAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAK-GKEVMEALLKAHGDDIDAVYAHNDEMAL 198 (273)
T ss_pred --CCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEeeccCCcccHHH-HHHHHHHHHHhCCCCccEEEECCcHHHH
Confidence 12348999975432 2234477888887 465432 11111111 11112 223332 2221 112222
Q ss_pred HHHHHHHhCC----CCEEEECCCCcccCCCCC-CCCCCceechHHHHHHHHHHHHHhhccC
Q 020005 276 IALQVLLVRA----VNTVILASDDMQDLLPPD-DPLLKKCIDPMDALARSTIKWVKSAEKG 331 (332)
Q Consensus 276 ~~~~~L~~~g----ad~VILGCTElpli~~~~-~~~~ipvID~~~~lA~a~v~~a~~~~~~ 331 (332)
.+++.+.+.| -|.-|.|+-..+..+... .+..--++.....+++.+++.....-+|
T Consensus 199 g~~~a~~~~g~~ip~di~iig~d~~~~~~~~~~~~~lt~~~~~~~~~g~~a~~~l~~~i~~ 259 (273)
T cd06309 199 GAIQAIKAAGKKPGKDIKIVSIDGTKDAFQAMADGKLNATVECNPLFGPLAFDTLEKYLAG 259 (273)
T ss_pred HHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCceEEEEecChhHHHHHHHHHHHHhcC
Confidence 3444455544 367888988777543211 1111112223344677777766655443
No 294
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=47.79 E-value=1.2e+02 Score=28.53 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeC-----------------------------CCchhhHH--HHhhhCCCCeeechHHHHH
Q 020005 152 ENLRRKRVFLEKAGARCIVMPC-----------------------------HLSHIWHD--EVCKGCSVPFLHVSECVAK 200 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~C-----------------------------NTaH~~~d--~l~~~~~iPii~Ive~t~~ 200 (332)
+.-...++.|++.|++.+.+|+ |...+|+. +++...++|++-+.+.|++
T Consensus 28 ~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~~~~AVG~~TA~ 107 (266)
T PRK08811 28 GEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARAHWLSVGEGTAR 107 (266)
T ss_pred HHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCCeEEEECHHHHH
Q ss_pred HHHHhcCCCCcC----------------CCCceEEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 201 ELKEANMKPLEA----------------GSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 201 ~l~~~g~k~~~~----------------~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
++++.|+++... ...++|.++-..+.. +...+.|.+.|..|..
T Consensus 108 aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr--~~L~~~L~~~G~~V~~ 166 (266)
T PRK08811 108 ALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGR--GLLAPTLQQRGARILR 166 (266)
T ss_pred HHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcH--HHHHHHHHHCCCEEeE
No 295
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.68 E-value=1.7e+02 Score=28.64 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT 175 (332)
.+.++.|+++|+|+|-+...|
T Consensus 230 ~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 230 VQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred HHHHHHHHHcCCCEEEeCCCC
Confidence 456678999999999998876
No 296
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=47.27 E-value=1.5e+02 Score=29.01 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=19.8
Q ss_pred ceEEEEechh-hhchhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNA-ILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~-T~~s~lY~~~l~~~Gi~vv~ 245 (332)
++|+|++|-. .-...-..+.|++.|.+++.
T Consensus 118 ~~i~l~~tiq~~~~~~~~~~~L~~~g~~v~i 148 (332)
T TIGR00322 118 RRIATIGTAQFNHKLHSVRDKLLNEGHEVYI 148 (332)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCceEEE
Confidence 4899999833 33334456677778887654
No 297
>TIGR03586 PseI pseudaminic acid synthase.
Probab=47.24 E-value=2.9e+02 Score=27.10 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=45.5
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHHhc---------CChHHHHHHHHHHHHHHHhCCC-
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDALNR---------KDVEGARNLLRIALQVLLVRAV- 286 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~ik~---------g~~~~a~~~l~~~~~~L~~~ga- 286 (332)
+-++.|..-..+- +.+.+.|+..+. ++.+.+...+ ++.+.+ |. ...+.+..+++.+.+.|.
T Consensus 91 i~~~stpfd~~sv---d~l~~~~v~~~KI~S~~~~n~~L---L~~va~~gkPvilstG~--~t~~Ei~~Av~~i~~~g~~ 162 (327)
T TIGR03586 91 LTIFSSPFDETAV---DFLESLDVPAYKIASFEITDLPL---IRYVAKTGKPIIMSTGI--ATLEEIQEAVEACREAGCK 162 (327)
T ss_pred CcEEEccCCHHHH---HHHHHcCCCEEEECCccccCHHH---HHHHHhcCCcEEEECCC--CCHHHHHHHHHHHHHCCCC
Confidence 5588888776543 557777888764 6666554223 344322 22 145667788888888888
Q ss_pred CEEEECCC-Ccc
Q 020005 287 NTVILASD-DMQ 297 (332)
Q Consensus 287 d~VILGCT-Elp 297 (332)
+.++|=|| .||
T Consensus 163 ~i~LlhC~s~YP 174 (327)
T TIGR03586 163 DLVLLKCTSSYP 174 (327)
T ss_pred cEEEEecCCCCC
Confidence 67777775 444
No 298
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=47.09 E-value=1e+02 Score=22.32 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=36.9
Q ss_pred hhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCC
Q 020005 230 GFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASD 294 (332)
Q Consensus 230 ~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCT 294 (332)
..+...++..|+++..+ +..+= - .......|..+.+.......++.+.+.|+|.||..|.
T Consensus 19 ~~~~~l~~~~g~~~~~~-~~~~C--C--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 78 (85)
T PF02754_consen 19 KALRKLLNKLGIEVVIP-ENQQC--C--GAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCP 78 (85)
T ss_pred HHHHHHHHHcCceeeec-CCCCC--C--ChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeCh
Confidence 44666778889999887 22111 0 0112222333345566666777777789999999986
No 299
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=46.94 E-value=2.8e+02 Score=27.06 Aligned_cols=37 Identities=8% Similarity=-0.034 Sum_probs=24.9
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
++.+.+.|+++|+=|..+.... ...+.+..++|+|+.
T Consensus 60 ~~~l~~~~v~aiiGp~~s~~~~~va~ia~~~~iP~Is~ 97 (387)
T cd06386 60 VDRSCARKPDLILGPVCEYAAAPVARLASHWNIPMISA 97 (387)
T ss_pred HHHHHhhCCCEEECCCCccHHHHHHHHHHhCCCcEEcc
Confidence 3445456999877776553332 577777888998875
No 300
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=46.87 E-value=1.2e+02 Score=29.30 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+.++.+.+.|+..|+|.+++. +.++.+.-+.|++.+
T Consensus 95 ~~a~~~a~~~ga~vIaIT~~~~---L~~~a~~~~~~~i~i 131 (337)
T PRK08674 95 LSAVEQALKRGAKIIAITSGGK---LKEMAKEHGLPVIIV 131 (337)
T ss_pred HHHHHHHHHCCCeEEEECCCch---HHHHHHhcCCeEEEe
Confidence 3445667788999999998862 455554445566654
No 301
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=46.72 E-value=92 Score=30.67 Aligned_cols=45 Identities=11% Similarity=0.314 Sum_probs=28.2
Q ss_pred echHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHH---HHHhcCCeEEe
Q 020005 193 HVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 193 ~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv~ 245 (332)
+.++...+.+++.|.+ |+.|++.++..+.+++++ .|++.|+++..
T Consensus 12 g~l~~l~~~l~~~g~~--------~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~ 59 (374)
T cd08189 12 GSLAQLPAAISQLGVK--------KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAV 59 (374)
T ss_pred CHHHHHHHHHHhcCCC--------eEEEEeCcchhhcccHHHHHHHHHhcCCeEEE
Confidence 3445555566665543 898888777666665554 46666877654
No 302
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=46.65 E-value=22 Score=34.90 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCchhh-------HHHHhhhCCCCeeechHHHHHHH
Q 020005 165 GARCIVMPCHLSHIW-------HDEVCKGCSVPFLHVSECVAKEL 202 (332)
Q Consensus 165 Gad~IvI~CNTaH~~-------~d~l~~~~~iPii~Ive~t~~~l 202 (332)
+++++.|+-||-|.= ...+...+++|+.+.+.-..+.+
T Consensus 287 ~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~~Dp~~~~~d~~ 331 (339)
T COG3367 287 NAKVVGIALNTRNLDEEEARELCAKLEAEFGLPVTDPLRFGEDVL 331 (339)
T ss_pred CCcEEEEEecccccChHHHHHHHHHHhhccCCccccccccchHHH
Confidence 499999999998863 34566778899888876554443
No 303
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=46.43 E-value=1.4e+02 Score=29.25 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhh-cCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLS-HDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~-~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
-+.+.+.||..|....++|.++++...+. .++.+..++..++ +++.. .+. ...+.
T Consensus 96 ~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei-~~~~~~~g~----------------------~~~e~ 152 (351)
T TIGR03700 96 ATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEI-HHFSKISGL----------------------PTEEV 152 (351)
T ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHH-HHHHHHcCC----------------------CHHHH
Confidence 46789999999987788999998888765 4444444331110 00000 000 01344
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH--HHHHHHHHhcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE--CVAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive--~t~~~l~~~g~k 208 (332)
.++|.++|+|.+ ++|++=.+.+++.+...-.=..--+ .+++.+++.|++
T Consensus 153 l~~LkeAGld~~--~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~ 203 (351)
T TIGR03700 153 LDELKEAGLDSM--PGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLK 203 (351)
T ss_pred HHHHHHcCCCcC--CCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 678999999955 3566655566666554221111112 466778888774
No 304
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=46.41 E-value=26 Score=34.07 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++.-|+|-.|.
T Consensus 159 eA~~Fv~~TgvD~LAvaiGt~HG~Yk 184 (307)
T PRK05835 159 EAEQFVKESQVDYLAPAIGTSHGAFK 184 (307)
T ss_pred HHHHHHHhhCCCEEEEccCccccccC
Confidence 44567788999999999999998775
No 305
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=46.37 E-value=1.3e+02 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~I 194 (332)
.+.++.|++.|++.|++..-+.. .++.++++.+++|++--
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 205 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIAS 205 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 44567899999999988554431 23566777777777744
No 306
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=46.25 E-value=54 Score=32.24 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l 202 (332)
...++.+++.|+|.|+-+|-+=+ .+|+...++|+.|+++.+++++
T Consensus 350 ~~k~~~i~~~~a~~ivt~Cp~C~---~ql~~~~~~~v~h~~ell~~~l 394 (396)
T PRK11168 350 APLFRQIEESGADLVVTDCETCK---WQIEMSTGLECEHPITLLAEAL 394 (396)
T ss_pred HHHHHHHHhcCCCEEEeCcHhHH---HHHHhcCCCCCCCHHHHHHHHh
Confidence 45567888899999999996533 4455567899999999887654
No 307
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=46.19 E-value=46 Score=31.85 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh-cCCCCcCCCCceEEEEechhhhchhhHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA-NMKPLEAGSPLRIGVLAKNAILTAGFYQE 234 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T~~s~lY~~ 234 (332)
++.++.++-|+|+++++--|+|-.|.. .-|-|++ + ..+++.+. +. ...+=|+.|+-... +++
T Consensus 152 ~a~~Fv~~TgvD~LAvsiGt~HG~Y~~-----~~p~L~~-~-~L~~i~~~~~v---------PLVlHGgSG~~~e~-~~~ 214 (276)
T cd00947 152 EAEEFVEETGVDALAVAIGTSHGAYKG-----GEPKLDF-D-RLKEIAERVNV---------PLVLHGGSGIPDEQ-IRK 214 (276)
T ss_pred HHHHHHHHHCCCEEEeccCccccccCC-----CCCccCH-H-HHHHHHHHhCC---------CEEEeCCCCCCHHH-HHH
Confidence 344567788999999999999998753 2455554 2 22334332 21 35666777765444 555
Q ss_pred HHHhcCCeEE
Q 020005 235 KLQHEGFEVV 244 (332)
Q Consensus 235 ~l~~~Gi~vv 244 (332)
.+ +.|+.=+
T Consensus 215 ai-~~Gi~Ki 223 (276)
T cd00947 215 AI-KLGVCKI 223 (276)
T ss_pred HH-HcCCeEE
Confidence 43 4576433
No 308
>PRK05926 hypothetical protein; Provisional
Probab=46.17 E-value=1.1e+02 Score=30.51 Aligned_cols=136 Identities=16% Similarity=0.107 Sum_probs=75.4
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
.+.+.|.||.+|....+||..+++...+. .++.+-.++-.++ .++... .... ..+..
T Consensus 115 ~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei-~~~~~~--------------~~~~-------~~e~l 172 (370)
T PRK05926 115 ITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEY-AYLSKL--------------DNLP-------VKEVL 172 (370)
T ss_pred CCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHH-HHHHhh--------------cCCC-------HHHHH
Confidence 57899999999998999999998888765 2333222221010 000000 0000 23446
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH---HHHHHHHHhcCCCCcCCCCceEEEEechhhhchhh---H
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE---CVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF---Y 232 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive---~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~l---Y 232 (332)
+.|.++|+|. +++|-+-.+.+++++.+.=.... .+ .+.+.+++.|++ .. --++.|--.|.+..+ +
T Consensus 173 ~~LkeAGl~~--~~g~GaEi~~e~~r~~~~p~~~t-~~e~l~~i~~a~~~Gi~----~~--sgmi~G~gEt~edrv~~l~ 243 (370)
T PRK05926 173 QTLKIAGLDS--IPGGGAEILVDEIRETLAPGRLS-SQGFLEIHKTAHSLGIP----SN--ATMLCYHRETPEDIVTHMS 243 (370)
T ss_pred HHHHHcCcCc--cCCCCchhcCHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCc----cc--CceEEeCCCCHHHHHHHHH
Confidence 7899999995 67776666677777644211111 23 566778888875 11 115555555654332 1
Q ss_pred -HHHHHhc--CCeEEec
Q 020005 233 -QEKLQHE--GFEVVLP 246 (332)
Q Consensus 233 -~~~l~~~--Gi~vv~P 246 (332)
=+.|+.. |+..++|
T Consensus 244 ~Lr~Lq~~t~gf~~fIp 260 (370)
T PRK05926 244 KLRALQDKTSGFKNFIL 260 (370)
T ss_pred HHHhcCCccCCeeeeEe
Confidence 1223322 7777776
No 309
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=46.04 E-value=1.6e+02 Score=26.76 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=51.6
Q ss_pred HHHHHHcCCcEEEEeCCC------chh-hHHHHhhhCCCCeeechHH-----------------HHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKAGARCIVMPCHL------SHI-WHDEVCKGCSVPFLHVSEC-----------------VAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT------aH~-~~d~l~~~~~iPii~Ive~-----------------t~~~l~~~g~k~~~~~ 213 (332)
+..-++.|||-|=+|.|- +.+ .+..+++..++|+.=|+.+ -++.+++.|.+
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~Gad----- 87 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGAD----- 87 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-S-----
T ss_pred HHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCC-----
Confidence 344578999999998863 222 2577777889998877654 34456666654
Q ss_pred CCceEEEEechhhhchhhHHHHHHhc-CCeEEe
Q 020005 214 SPLRIGVLAKNAILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
.--+|.|..++++....-++.++.. |++++.
T Consensus 88 -G~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tF 119 (201)
T PF03932_consen 88 -GFVFGALTEDGEIDEEALEELIEAAGGMPVTF 119 (201)
T ss_dssp -EEEE--BETTSSB-HHHHHHHHHHHTTSEEEE
T ss_pred -eeEEEeECCCCCcCHHHHHHHHHhcCCCeEEE
Confidence 2268999999999888888777755 676654
No 310
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=46.03 E-value=2.2e+02 Score=25.32 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=73.5
Q ss_pred HHHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 158 ~~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
++.|.+.++|.+++ +++.....+.... ..++|++-+ ...+++.+.+.|. ++|
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i 119 (264)
T cd01574 49 VRRLLAQRVDGVIVNAPLDDADAALAAA-PADVPVVFVDGSPSPRVSTVSVDQEGGARLATEHLLELGH--------RTI 119 (264)
T ss_pred HHHHHhcCCCEEEEeCCCCChHHHHHHH-hcCCCEEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHCCC--------CEE
Confidence 44567778998775 5554332222222 234555544 2334455555544 389
Q ss_pred EEEechhh-----hchhhHHHHHHhcCCeEE--ecCccchhhchHHHHHH-HhcCChHH----HHHHHHHHHHHHHhCCC
Q 020005 219 GVLAKNAI-----LTAGFYQEKLQHEGFEVV--LPDKATMEHTLIPALDA-LNRKDVEG----ARNLLRIALQVLLVRAV 286 (332)
Q Consensus 219 GlLaT~~T-----~~s~lY~~~l~~~Gi~vv--~P~~~~q~~~l~~~i~~-ik~g~~~~----a~~~l~~~~~~L~~~ga 286 (332)
++++.+.. .+..-|.+.+++.|+++. .......+. -.+.++. +.....+. .......+++.+.+.|-
T Consensus 120 ~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~~~~~g~ 198 (264)
T cd01574 120 AHVAGPEEWLSARARLAGWRAALEAAGIAPPPVLEGDWSAES-GYRAGRELLREGDPTAVFAANDQMALGVLRALHELGL 198 (264)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHCCCCcceeeecCCCHHH-HHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHcCC
Confidence 99965332 222347778887777542 221111111 1111222 22222211 11233345555665552
Q ss_pred ----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 287 ----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 287 ----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
|.-|+|+-..+..... .+ .+..|+ +...+++.+++....
T Consensus 199 ~ip~~i~ii~~d~~~~~~~~-~~-~~~ti~~~~~~~g~~a~~~l~~ 242 (264)
T cd01574 199 RVPDDVSVVGFDDIPESAYF-IP-PLTTVRQDFAALGRRAVELLLA 242 (264)
T ss_pred CCccceEEecccCchHHhcc-CC-CcceeeCCHHHHHHHHHHHHHH
Confidence 6777877766643311 11 112222 344455555555443
No 311
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=45.99 E-value=2.2e+02 Score=25.39 Aligned_cols=159 Identities=15% Similarity=0.078 Sum_probs=77.6
Q ss_pred HHHHHHHcCCcEEEEe-CCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|...++|.|++. ++.....+.++.+ .++|++-+ ...+++++.+.|.+
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~-------- 117 (264)
T cd06274 47 TVETLIARQVDALIVAGSLPPDDPYYLCQK-AGLPVVALDRPGDPSRFPSVVSDNRDGAAELTRELLAAPPE-------- 117 (264)
T ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHh-cCCCEEEecCccCCCCCCEEEEccHHHHHHHHHHHHHCCCC--------
Confidence 3456778899977654 4432222445433 34565443 23345556665544
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCe--E--EecCccchhhchHHHH-HHHhcC-C-hHH----HHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFE--V--VLPDKATMEHTLIPAL-DALNRK-D-VEG----ARNLLRIALQV 280 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~--v--v~P~~~~q~~~l~~~i-~~ik~g-~-~~~----a~~~l~~~~~~ 280 (332)
+|++++.... -+..=|.+.++.+|++ . +.......+. -...+ +.+.++ . .+. .......+++.
T Consensus 118 ~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~a 196 (264)
T cd06274 118 EVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPES-GYQLMAELLARLGRLPRALFTTSYTLLEGVLRF 196 (264)
T ss_pred cEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCCChHH-HHHHHHHHHccCCCCCcEEEEcChHHHHHHHHH
Confidence 8999965332 1223377888888753 1 2111111111 11112 234432 2 221 12223345556
Q ss_pred HHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 281 LLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 281 L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
+.+.|. |..|.|+...+.. ....+ .+..|+ +...+++.+++....
T Consensus 197 l~~~g~~ip~dv~v~g~d~~~~~-~~~~~-~ltti~~~~~~~g~~a~~~l~~ 246 (264)
T cd06274 197 LRERPGLAPSDLRIATFDDHPLL-DFLPF-PVHSVPQDHEALAEAAFELALA 246 (264)
T ss_pred HHHcCCCCCcceEEEEeCCHHHH-HhcCC-CceEEeCCHHHHHHHHHHHHHH
Confidence 666664 6888888887743 22222 123333 345566666665443
No 312
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=45.93 E-value=2.5e+02 Score=26.00 Aligned_cols=37 Identities=8% Similarity=-0.010 Sum_probs=22.4
Q ss_pred HHHHHHHc-CCcEEEEeCCCchhh--HHHHhhhCCCCeeec
Q 020005 157 KRVFLEKA-GARCIVMPCHLSHIW--HDEVCKGCSVPFLHV 194 (332)
Q Consensus 157 ~~~~Le~~-Gad~IvI~CNTaH~~--~d~l~~~~~iPii~I 194 (332)
.++.|.+. ++++|+.++.+.+.. .+.+ +..++|+|..
T Consensus 56 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~ 95 (333)
T cd06332 56 AARKLIEQDKVDVVVGPVFSNVALAVVPSL-TESGTFLISP 95 (333)
T ss_pred HHHHHHHHcCCcEEEcCCccHHHHHHHHHH-hhcCCeEEec
Confidence 34455554 999998876554432 3333 3457887775
No 313
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=45.89 E-value=76 Score=31.31 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=63.6
Q ss_pred cCeEEEEeCCChH-HHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVD-STLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiGGmGp~-AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
-+.+.|+||-+|. ...+++.++++..... ..+.+ + ..|. -.+.
T Consensus 120 v~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I---e------------i~~l--------------------t~e~ 164 (366)
T TIGR02351 120 FKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI---E------------VQPL--------------------NEEE 164 (366)
T ss_pred CCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc---c------------cccC--------------------CHHH
Confidence 5789999999987 5578888888777543 11111 1 0110 1234
Q ss_pred HHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc
Q 020005 158 RVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~ 228 (332)
.+.|.++|++-+-+--.|.+. .|..+.....---..-.-.+.+.+++.|++.. .-.+++|...+..
T Consensus 165 ~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v-----~~g~i~Gl~e~~~ 231 (366)
T TIGR02351 165 YKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI-----GIGALLGLDDWRT 231 (366)
T ss_pred HHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee-----ceeEEEeCchhHH
Confidence 467999999999998888855 36666421111111112345567777776411 2345677665543
No 314
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=45.70 E-value=96 Score=31.11 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH---HHHHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ---EKLQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~---~~l~~~Gi~vv~ 245 (332)
++.+.+.+++.|.+ |+.|+..++..+.+.++ +.|++.|+++.+
T Consensus 11 ~~~l~~~l~~~g~~--------~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~ 56 (414)
T cd08190 11 TAEVGMDLKNLGAR--------RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEV 56 (414)
T ss_pred HHHHHHHHHHcCCC--------eEEEEECcchhhcchHHHHHHHHHHcCCcEEE
Confidence 45555566665544 89888887777766654 446666877654
No 315
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=45.63 E-value=1.4e+02 Score=29.19 Aligned_cols=110 Identities=19% Similarity=0.301 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEech
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~ 224 (332)
-+.++=++.|.+.+-.+.++|||.|+ |+.-+.--...| -+.+-+.|+. .|+||.=.
T Consensus 140 idND~Tl~~Lak~Al~~A~AGADiVA-PSdMMDGrV~aI---------------R~aLd~~g~~--------~v~ImSYs 195 (324)
T PF00490_consen 140 IDNDETLERLAKQALSHAEAGADIVA-PSDMMDGRVGAI---------------REALDEAGFS--------DVPIMSYS 195 (324)
T ss_dssp BEHHHHHHHHHHHHHHHHHHT-SEEE-E-S--TTHHHHH---------------HHHHHHTTCT--------TSEEEEEE
T ss_pred EecHHHHHHHHHHHHHHHHhCCCeec-cccccCCHHHHH---------------HHHHHhCCCC--------CccEEech
Confidence 35567777888888889999999654 666555443333 3445566665 79999877
Q ss_pred hhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 225 AILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
.-..|.||.-.-+..|=..-.-+...-+ + +....++.++++...+ ++|||.|+.
T Consensus 196 aKyaS~fYGPFRdAa~Sap~fgDrktYQ--m----------dp~N~~EAlre~~~D~-~EGAD~lMV 249 (324)
T PF00490_consen 196 AKYASAFYGPFRDAAGSAPKFGDRKTYQ--M----------DPANRREALREAELDI-EEGADILMV 249 (324)
T ss_dssp EEB-SSTGHHHHHHHT-HHSSSTSTTTS--B-----------TT-HHHHHHHHHHHH-HTT-SEEEE
T ss_pred HHHhhhhhHhHHHHhcCCccccCccccc--C----------CCccHHHHHHHhhhhH-hhCCCEEEe
Confidence 7778888875433322211100111000 0 1122456666665554 479998775
No 316
>PRK08185 hypothetical protein; Provisional
Probab=45.59 E-value=58 Score=31.23 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh-cCCCCcCCCCceEEEEechhhhchhhHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA-NMKPLEAGSPLRIGVLAKNAILTAGFYQEK 235 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~ 235 (332)
+.++.++-|+|+++++.-|+|..|..=. -|=++ .+ ..+.+++. +. .+.+.|+.++-... +++.
T Consensus 154 a~~f~~~TgvD~LAvaiGt~HG~y~~~~----kp~L~-~e-~l~~I~~~~~i---------PLVlHGgsg~~~e~-~~~a 217 (283)
T PRK08185 154 AEDFVSRTGVDTLAVAIGTAHGIYPKDK----KPELQ-MD-LLKEINERVDI---------PLVLHGGSANPDAE-IAES 217 (283)
T ss_pred HHHHHHhhCCCEEEeccCcccCCcCCCC----CCCcC-HH-HHHHHHHhhCC---------CEEEECCCCCCHHH-HHHH
Confidence 3455666799999999999999875311 13333 22 22334432 22 47788888876444 5554
Q ss_pred HHhcCCeEEe
Q 020005 236 LQHEGFEVVL 245 (332)
Q Consensus 236 l~~~Gi~vv~ 245 (332)
-+.|+.=+-
T Consensus 218 -i~~GI~KiN 226 (283)
T PRK08185 218 -VQLGVGKIN 226 (283)
T ss_pred -HHCCCeEEE
Confidence 456765443
No 317
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=45.46 E-value=57 Score=32.33 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l 202 (332)
...++.+++.|+|.|+-+|-+-+. .|....++|++|+++.+++++
T Consensus 361 ~~k~~~~~~~~ad~ivt~Cp~C~~---ql~~~~~~~v~H~~ell~~al 405 (407)
T PRK11274 361 DNKLAALEAGKPEVIVTANIGCQT---HLQSGTRTPVRHWIELVDEAL 405 (407)
T ss_pred HHHHHHHHhcCCCEEEecCcCHHH---HHcCCCCCceeeHHHHHHHHh
Confidence 445677788999999999966444 445566899999999887654
No 318
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=45.17 E-value=1e+02 Score=30.79 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHH---HHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK---LQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~---l~~~Gi~vv~ 245 (332)
++...+.++..|.+ |+.|+..++..+.+++++. |+..|+++.+
T Consensus 17 l~~l~~~~~~~g~~--------r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~i 62 (377)
T COG1454 17 LKELGEEVKRLGAK--------RALIVTDRGLAKLGLLDKVLDSLDAAGIEYEV 62 (377)
T ss_pred HHHHHHHHHhcCCC--------ceEEEECCccccchhHHHHHHHHHhcCCeEEE
Confidence 45555556655555 9999999999999988865 5556866543
No 319
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=45.01 E-value=93 Score=31.07 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=27.0
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHH---HHHhcCCeEEe
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv~ 245 (332)
-++...+.+++.|.+ ++.|.+.++..+.+++++ .|++.|+++.+
T Consensus 36 ~~~~l~~~~~~~g~~--------~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~ 82 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--------HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTL 82 (395)
T ss_pred HHHHHHHHHHhcCCC--------EEEEEcCcchhhCccHHHHHHHHHHcCCeEEE
Confidence 445555566665543 777776665556666654 46677887653
No 320
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.88 E-value=1.9e+02 Score=27.96 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch---------hhHHHHhhhCCCCeeechHH
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH---------IWHDEVCKGCSVPFLHVSEC 197 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH---------~~~d~l~~~~~iPii~Ive~ 197 (332)
..+.++.|+++|+|.|.+-+=|.. .++.++++.+++||+...+.
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCC
Confidence 345567799999999988765521 12577888899999988665
No 321
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=44.73 E-value=48 Score=31.36 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------------HHHHhhhCCCCe
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------------HDEVCKGCSVPF 191 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---------------~d~l~~~~~iPi 191 (332)
.+.+++.++..+.++.|++.|+|.|++-...--+| ..++++.+++|+
T Consensus 22 ~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~ 83 (254)
T PF03437_consen 22 GSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPV 83 (254)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 37889999999999999999999999976443222 356677777773
No 322
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=44.60 E-value=54 Score=32.54 Aligned_cols=94 Identities=15% Similarity=0.267 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhhhc---hhhHHHHHHhcCCeEE----ecCcc-chh--hchHHHH-HHHhc
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVV----LPDKA-TME--HTLIPAL-DALNR 264 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv----~P~~~-~q~--~~l~~~i-~~ik~ 264 (332)
.+.++.+++.+.+ +|+++..+...- ...+++.+++.|++++ .|... ... ......+ ..++.
T Consensus 161 ~ai~~li~~~~w~--------~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~ 232 (403)
T cd06361 161 KAMAHLIKKSGWN--------WVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEE 232 (403)
T ss_pred HHHHHHHHHcCCc--------EEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhc
Confidence 3444555666665 999998765543 3445677888898874 23211 110 0011111 22332
Q ss_pred CChH-----HHHHHHHHHHHHHHhCCCCEEEECCCCcc
Q 020005 265 KDVE-----GARNLLRIALQVLLVRAVNTVILASDDMQ 297 (332)
Q Consensus 265 g~~~-----~a~~~l~~~~~~L~~~gad~VILGCTElp 297 (332)
...+ ........+++.+.+.|.+.+.+|.....
T Consensus 233 ~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 233 NKVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred CCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 2111 11223344455566678888888876654
No 323
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=44.50 E-value=1.3e+02 Score=24.35 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=45.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
||+|-++=|.|- +|--+.+++.+..... .+++-+... + +.+...
T Consensus 1 MkkILlvCg~G~-STSlla~k~k~~~~e~-gi~~~i~a~---------------~-------------------~~e~~~ 44 (104)
T PRK09590 1 MKKALIICAAGM-SSSMMAKKTTEYLKEQ-GKDIEVDAI---------------T-------------------ATEGEK 44 (104)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHHHHHC-CCceEEEEe---------------c-------------------HHHHHH
Confidence 466766666666 5557888886665444 444444220 0 011112
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhh---CCCCeeec
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKG---CSVPFLHV 194 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~---~~iPii~I 194 (332)
.+...++|+|+++-...|.. +++++. .++|+..|
T Consensus 45 ~~~~~~~DvIll~PQi~~~~-~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 45 AIAAAEYDLYLVSPQTKMYF-KQFEEAGAKVGKPVVQI 81 (104)
T ss_pred hhccCCCCEEEEChHHHHHH-HHHHHHhhhcCCCEEEe
Confidence 23345689998887766554 666654 57888876
No 324
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.33 E-value=2.1e+02 Score=25.59 Aligned_cols=79 Identities=20% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCcEEEEeC---CCchh--hHHHHhhhCCCCeeec---hHH-HHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 156 RKRVFLEKAGARCIVMPC---HLSHI--WHDEVCKGCSVPFLHV---SEC-VAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~C---NTaH~--~~d~l~~~~~iPii~I---ve~-t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+.++..+++||++|-+.+ +..+. .++.+++.+++||+-. .+. -++.+.+.|.+ .|-|.++...
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad--------~v~l~~~~~~ 106 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGAD--------AVLLIVAALD 106 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCC--------EEEEeeccCC
Confidence 345667889999986642 11112 2577788889999843 222 46667777765 5555554333
Q ss_pred hchhhHHHH---HHhcCCeEE
Q 020005 227 LTAGFYQEK---LQHEGFEVV 244 (332)
Q Consensus 227 ~~s~lY~~~---l~~~Gi~vv 244 (332)
. ...++. ....|++++
T Consensus 107 ~--~~~~~~~~~~~~~g~~~~ 125 (217)
T cd00331 107 D--EQLKELYELARELGMEVL 125 (217)
T ss_pred H--HHHHHHHHHHHHcCCeEE
Confidence 2 222322 334577653
No 325
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=44.30 E-value=1.1e+02 Score=30.23 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH---HHHHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ---EKLQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~---~~l~~~Gi~vv~ 245 (332)
++.+.+.+++.+.+ |+.|++.+...+.++++ +.|++.|+++.+
T Consensus 11 ~~~l~~~~~~~~~~--------r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 11 VDETGAVLADLGGK--------RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred HHHHHHHHHHcCCC--------eEEEEcCcchhhcchHHHHHHHHHHCCCeEEE
Confidence 44555555654433 89988877777766666 446666887643
No 326
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=44.21 E-value=2.6e+02 Score=25.80 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=48.3
Q ss_pred HHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeec---------------------------hHHHHHHHHHhcCCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV---------------------------SECVAKELKEANMKP 209 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I---------------------------ve~t~~~l~~~g~k~ 209 (332)
...+.+.|+++|+=|-..... ....+....++|+|+. .+++++.++..+.+
T Consensus 44 ~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~- 122 (348)
T PF01094_consen 44 ICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWT- 122 (348)
T ss_dssp HHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSS-
T ss_pred hhhccCCCcEEEECCCcccccchhheeecccccceeeccccccccccchhhccccccccccHHHHHHHHHHhhhcCCCc-
Confidence 344566788888877665543 3566666777777776 34455556666665
Q ss_pred CcCCCCceEEEEechhhhc---hhhHHHHHHhcCC
Q 020005 210 LEAGSPLRIGVLAKNAILT---AGFYQEKLQHEGF 241 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi 241 (332)
+|+++....+.- ...+++.+++.+.
T Consensus 123 -------~v~vv~~~~~~~~~~~~~~~~~~~~~~~ 150 (348)
T PF01094_consen 123 -------RVSVVYSDDDYGNSLADSFQDLLRERGG 150 (348)
T ss_dssp -------EEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred -------eeeeeccccccccccchhhhhhhccccc
Confidence 899999887762 2335666777553
No 327
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=43.87 E-value=1.3e+02 Score=28.73 Aligned_cols=117 Identities=17% Similarity=0.079 Sum_probs=63.9
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhh-hcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELL-SHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll-~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
-+.|.|.||..|....++|..+++...+. .++.+..++..++- .+. ..+.. ..+.
T Consensus 53 ~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~-~~~~~~g~~----------------------~~e~ 109 (309)
T TIGR00423 53 ATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVY-FLAKNEGLS----------------------IEEV 109 (309)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHH-HHHHHcCCC----------------------HHHH
Confidence 36899999999987788888888887665 33443333311110 000 00000 1345
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhC-C--CCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC-S--VPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~-~--iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~ 228 (332)
++.|.++|++.+. .+.+..+-+++++.. + .+.-.. -.+++.+++.|++ ..--.++|-..|.+
T Consensus 110 l~~LkeAGl~~i~--~~g~E~l~~~~~~~i~~~~~t~~~~-l~~i~~a~~~Gi~------~~s~~iiG~~Et~e 174 (309)
T TIGR00423 110 LKRLKKAGLDSMP--GTGAEILDDSVRRKICPNKLSSDEW-LEVIKTAHRLGIP------TTATMMFGHVENPE 174 (309)
T ss_pred HHHHHHcCCCcCC--CCcchhcCHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCC------ceeeEEecCCCCHH
Confidence 6789999999773 333334446666543 2 222111 3566777888875 11233666555554
No 328
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=43.84 E-value=2.8e+02 Score=26.10 Aligned_cols=39 Identities=13% Similarity=-0.046 Sum_probs=24.9
Q ss_pred HHHHHHHcCCcEEEEeC---CCchhh---HHHHhhhCCCCeeech
Q 020005 157 KRVFLEKAGARCIVMPC---HLSHIW---HDEVCKGCSVPFLHVS 195 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~C---NTaH~~---~d~l~~~~~iPii~Iv 195 (332)
.++.|.+.|.++..+.- .--|-+ +.-+....++|||.+.
T Consensus 98 i~~~l~~~Gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs 142 (272)
T cd07362 98 LVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSIS 142 (272)
T ss_pred HHHHHHHcCCceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEe
Confidence 34577889988765431 234543 4556666789998884
No 329
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=43.78 E-value=2e+02 Score=27.80 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh-H-HHHhh-----------------hCCCCeeech-------HHHHHHH
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIW-H-DEVCK-----------------GCSVPFLHVS-------ECVAKEL 202 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~-~-d~l~~-----------------~~~iPii~Iv-------e~t~~~l 202 (332)
.+.....+.++.|++.|+++++++--|.-+. . |+..+ ...+|++-+- +..++..
T Consensus 12 gLl~~a~~ia~~l~~~~~~v~I~gD~tYGaCcV~D~~a~~~~D~iVH~GHscl~~~~~~~pv~yV~~~~~~d~~~~~~~~ 91 (308)
T TIGR03682 12 GLKRRAFEIAQKLEEKGYEVIISGEPCYGACDLADDEALELVDLIVHFGHSPLPNVKPEIPVIFIEARSDVDVEEVIEKA 91 (308)
T ss_pred hHHHHHHHHHHHHHhCCceEEEEcCCceeeccCChHHHHhcCCEEEEcCCCCCCcccCCCCEEEEEecCCcCHHHHHHHH
Confidence 3444455667778888999888754443322 2 32211 2335665442 2223333
Q ss_pred HHhcCCCCcCCCCceEEEEechhh-hchhhHHHHHHhcCCeEEecC
Q 020005 203 KEANMKPLEAGSPLRIGVLAKNAI-LTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 203 ~~~g~k~~~~~~~~rVGlLaT~~T-~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
.+. .+ .++|+|++|-.- -...-..+.|++.|++++.+.
T Consensus 92 ~~~-~~------~~~v~l~~tiq~~~~~~~v~~~L~~~g~~v~i~~ 130 (308)
T TIGR03682 92 LEE-LK------GRRIGLVTTAQHVHLLEKVKEILEERGIEVVIGK 130 (308)
T ss_pred HHH-CC------CCeEEEEEcHHhHHHHHHHHHHHHHcCceEEecC
Confidence 322 11 248999998432 222334566778899888764
No 330
>PRK14982 acyl-ACP reductase; Provisional
Probab=43.64 E-value=3.3e+02 Score=26.82 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhh----hC-CCCeee------------chHHHHHH-HHHhcC
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCK----GC-SVPFLH------------VSECVAKE-LKEANM 207 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~----~~-~iPii~------------Ive~t~~~-l~~~g~ 207 (332)
..+.....+.++++.+++.|++...+|-.|.=.. +.... .+ ++.+=. +.-..++. ....+.
T Consensus 73 ~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~-~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~ 151 (340)
T PRK14982 73 RFKTARRKVLNAMALAQKKGINITALGGFSSIIF-ENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICRQVEQNAPRLGI 151 (340)
T ss_pred ChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhc-CCcccccccccccceeccccccCCchhHHHHHHHHHHHhHHHhcc
Confidence 3445557788888999999999999999884322 21111 11 122210 11122222 222221
Q ss_pred CCCcCCCCceEEEEechhhhchhhHHHHHHhcCC-eEEecC
Q 020005 208 KPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGF-EVVLPD 247 (332)
Q Consensus 208 k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi-~vv~P~ 247 (332)
. -+.++|.|+|..|.+-+.+-+...++.|. +++..+
T Consensus 152 ~----l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~ 188 (340)
T PRK14982 152 D----LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA 188 (340)
T ss_pred C----cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc
Confidence 1 23469999999899887766655555564 555544
No 331
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=43.62 E-value=61 Score=30.69 Aligned_cols=50 Identities=12% Similarity=0.303 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------------HHHHhhhCCCCeeec
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------------HDEVCKGCSVPFLHV 194 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---------------~d~l~~~~~iPii~I 194 (332)
..+.++++++..+.++.|++.|+|.|++-...--+| ..+++..+++| +++
T Consensus 20 ~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~Gv 84 (257)
T TIGR00259 20 DDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGI 84 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eee
Confidence 346788999999999999999999999965544444 35677788778 443
No 332
>PLN02645 phosphoglycolate phosphatase
Probab=43.51 E-value=2.2e+02 Score=27.21 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCC-----eeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iP-----ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
..+.+++|.+.|..++++.-|+.+. +++.+++ .+++ |++-...+...+++.+.. +.++|-++|+.+
T Consensus 49 a~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~-lGi~~~~~~I~ts~~~~~~~l~~~~~~-----~~~~V~viG~~~ 122 (311)
T PLN02645 49 VPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES-LGLNVTEEEIFSSSFAAAAYLKSINFP-----KDKKVYVIGEEG 122 (311)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH-CCCCCChhhEeehHHHHHHHHHhhccC-----CCCEEEEEcCHH
Confidence 3566778999999998888888444 3555543 3433 445555566666654331 234799999853
Q ss_pred hhchhhHHHHHHhcCCeEEe
Q 020005 226 ILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv~ 245 (332)
- .+.++++|++.+.
T Consensus 123 ~------~~~l~~~Gi~~~~ 136 (311)
T PLN02645 123 I------LEELELAGFQYLG 136 (311)
T ss_pred H------HHHHHHCCCEEec
Confidence 2 4566788988754
No 333
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=43.24 E-value=89 Score=30.71 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred CCCcceeeccCCCCCcccccccCCCCCCC--------CcchhhhccCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCE
Q 020005 43 PPSSVLLQTDESGKFQESKKSFGSKAAPF--------CSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPF 113 (332)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~ 113 (332)
-|--.+++.|...+... +-.|-.-.. -...+|+..+++|.+|||--..+..|..-.....+.- ..+.+
T Consensus 119 ~Pd~~F~iid~~~~~~~---Nv~s~~f~~~egayL~G~~AA~~sk~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np~i~v 195 (345)
T COG1744 119 YPDVKFVIIDGVVKKED---NVASYVFREYEGAYLAGVAAAKMSKSGKVGFVGGMDIPEVNRFINGFLAGAKSVNPDIKV 195 (345)
T ss_pred CCCCEEEEecCccCCCC---ceEEEEeccccHHHHHHHHHHHhhcCCceeEEecccchhhHHHHHHHHHHHHhhCCCccE
Confidence 46667777777655443 111111111 1244556678999999999999998888776655532 33433
Q ss_pred EEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 114 LLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 114 vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
...-.. + ..|+..- .+++..|.+.|||+|.-.+.+.+..
T Consensus 196 ~v~~~g-----------s------------f~D~~k~----k~~a~~li~~GaDVI~~~ag~~~~g 234 (345)
T COG1744 196 KVVYVG-----------S------------FSDPAKG----KEAANALIDQGADVIYPAAGGTGVG 234 (345)
T ss_pred EEEEec-----------C------------ccChHHH----HHHHHHHHhcCCCEEEecCCCCcch
Confidence 321100 1 1122221 2356789999999999999988876
No 334
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=43.19 E-value=1.2e+02 Score=28.58 Aligned_cols=39 Identities=18% Similarity=-0.046 Sum_probs=25.3
Q ss_pred HHHHHHHcCCcEEEEeCCCc---hhh---HHHHhhhCCCCeeech
Q 020005 157 KRVFLEKAGARCIVMPCHLS---HIW---HDEVCKGCSVPFLHVS 195 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa---H~~---~d~l~~~~~iPii~Iv 195 (332)
.++.+.++|.++..+...+. |-. +.-+....++|++-+.
T Consensus 93 i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs 137 (268)
T cd07371 93 CVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVIS 137 (268)
T ss_pred HHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEE
Confidence 34678889999887655543 433 4566666677766553
No 335
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.12 E-value=1.8e+02 Score=26.76 Aligned_cols=121 Identities=7% Similarity=-0.013 Sum_probs=68.1
Q ss_pred HHHHHHH-cCCcEEEEeCCCch--------hhHHHHhhhCCCCee-----echHHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 157 KRVFLEK-AGARCIVMPCHLSH--------IWHDEVCKGCSVPFL-----HVSECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 157 ~~~~Le~-~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii-----~Ive~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
.++.+++ .|||-+.|.=-.+- ..+.++.+.+.+|+- .-.|. ++.+...|.. || +++
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~-v~~~l~~Ga~--------kv-vig 105 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQ-IMDYFAAGIN--------YC-IVG 105 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHH-HHHHHHCCCC--------EE-EEC
Confidence 3455666 69997776533222 257788888888853 22333 3455556664 77 889
Q ss_pred chhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCC
Q 020005 223 KNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASD 294 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCT 294 (332)
|..--...++++..+++|-++++ +-+.....+. ..|..+...-.+.+.++.+.+.|+..+|+-.-
T Consensus 106 t~a~~~~~~l~~~~~~fg~~ivv-slD~~~g~v~------~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi 170 (234)
T PRK13587 106 TKGIQDTDWLKEMAHTFPGRIYL-SVDAYGEDIK------VNGWEEDTELNLFSFVRQLSDIPLGGIIYTDI 170 (234)
T ss_pred chHhcCHHHHHHHHHHcCCCEEE-EEEeeCCEEE------ecCCcccCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 97766778889888888644433 1111111110 11222222223455556667778877776544
No 336
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.04 E-value=1.4e+02 Score=29.06 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHhccC--CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 020005 90 SVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (332)
Q Consensus 90 Gp~AT~~~y~kI~~~t~~d--~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (332)
+.+-=..|...+++..++. +.+++.+.-++ .++. ....+.++ ..+.++.|++.|+|
T Consensus 194 slenR~rf~~EiI~aIR~avG~d~~v~vris~-------------~~~~-----~~g~~~ee----a~~ia~~Le~~Gvd 251 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNS-------------ADFQ-----RGGFTEED----ALEVVEALEEAGVD 251 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcH-------------HHcC-----CCCCCHHH----HHHHHHHHHHcCCC
Confidence 3555567777777777654 45666552211 1110 00012222 34566789999999
Q ss_pred EEEEeCCC
Q 020005 168 CIVMPCHL 175 (332)
Q Consensus 168 ~IvI~CNT 175 (332)
+|-+...+
T Consensus 252 ~iev~~g~ 259 (338)
T cd04733 252 LVELSGGT 259 (338)
T ss_pred EEEecCCC
Confidence 99876654
No 337
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=42.91 E-value=1.8e+02 Score=29.46 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=71.8
Q ss_pred hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHH
Q 020005 179 WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPA 258 (332)
Q Consensus 179 ~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~ 258 (332)
.++.+-++.++..++-.++....++-....|. +..+||++++..+-.. .+-.+.+++.|+++-.++++.++. +...
T Consensus 261 ~~~a~~~~~Gv~~~~~~~el~~~~~~l~~~~~--~~g~rvaivs~sGG~g-~l~aD~~~~~Gl~lp~ls~~t~~~-L~~~ 336 (447)
T TIGR02717 261 AYDAAFKQAGVIRADSIEELFDLARLLSNQPL--PKGNRVAIITNAGGPG-VIATDACEENGLELAELSEATKNK-LRNI 336 (447)
T ss_pred HHHHHHHHCCeEEeCCHHHHHHHHHHHhcCCC--CCCCeEEEEECCchHH-HHHHHHHHHcCCCcCCCCHHHHHH-HHHh
Confidence 46778888899999998988877665543322 3455999999988654 356788899999876566555542 2211
Q ss_pred HHH-Hhc-CChH----HHHHHHHHHHHHHHhC-CCCEEEECCC
Q 020005 259 LDA-LNR-KDVE----GARNLLRIALQVLLVR-AVNTVILASD 294 (332)
Q Consensus 259 i~~-ik~-g~~~----~a~~~l~~~~~~L~~~-gad~VILGCT 294 (332)
+.. ... +.++ ...+.+..+++.+.+. ++|.|+...+
T Consensus 337 lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~ 379 (447)
T TIGR02717 337 LPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLT 379 (447)
T ss_pred CccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEcc
Confidence 110 011 1111 1246677777777754 8999986654
No 338
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=42.86 E-value=2.4e+02 Score=24.95 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=43.1
Q ss_pred HHHHHHHcCCcEEEE-eCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI-~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.+.+.++|.|++ +++..-.....+. .++|++.+ ...+++++.+.|.+
T Consensus 47 ~~~~~~~~~vdgiii~~~~~~~~~~~~~~--~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~-------- 116 (267)
T cd06284 47 YLDLLRRKQADGIILLDGSLPPTALTALA--KLPPIVQACEYIPGLAVPSVSIDNVAAARLAVDHLISLGHR-------- 116 (267)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHh--cCCCEEEEecccCCCCcceEEecccHHHHHHHHHHHHcCCc--------
Confidence 345688889998777 5542222233332 26676643 23345556555543
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCe
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFE 242 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~ 242 (332)
+|++++.... -+..-|.+.++++|++
T Consensus 117 ~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~ 147 (267)
T cd06284 117 RIALITGPRDNPLARDRLEGYRQALAEAGLP 147 (267)
T ss_pred eEEEEcCCccchhHHHHHHHHHHHHHHcCCC
Confidence 8999965322 1223466778888754
No 339
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=42.65 E-value=1.1e+02 Score=30.04 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=28.7
Q ss_pred echHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH---HHHHhcCCeEEe
Q 020005 193 HVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ---EKLQHEGFEVVL 245 (332)
Q Consensus 193 ~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~---~~l~~~Gi~vv~ 245 (332)
+.++...+.+++.|.+ |+.|++...+.+.++++ +.|++.|+++..
T Consensus 14 g~l~~l~~~l~~~g~~--------~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~ 61 (377)
T cd08176 14 GAIKEIGDELKNLGFK--------KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI 61 (377)
T ss_pred CHHHHHHHHHHHhCCC--------eEEEECCchHhhcCcHHHHHHHHHHcCCeEEE
Confidence 3455555666665544 88888777666656665 456666877644
No 340
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=42.44 E-value=4.8e+02 Score=28.41 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhCCCCeee---chH-HHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH---VSE-CVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~~iPii~---Ive-~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+.++..++.||++|-+-+-.-+. .+.++++.+++||+- |++ --+.+++..|.+ -|.|++.--+
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GAD--------avLLI~~~L~ 145 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGAD--------LVLLIVAALD 145 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCC--------EeehhHhhcC
Confidence 34566889999998887765222 256777888999884 333 344556666654 4555553221
Q ss_pred -hchhhHHHHHHhcCCeEEe
Q 020005 227 -LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 -~~s~lY~~~l~~~Gi~vv~ 245 (332)
-+-.-+-+...+.|+++++
T Consensus 146 ~~~l~~l~~~a~~lGme~Lv 165 (695)
T PRK13802 146 DAQLKHLLDLAHELGMTVLV 165 (695)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 1122233445667999876
No 341
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=42.41 E-value=2.3e+02 Score=27.69 Aligned_cols=78 Identities=8% Similarity=0.056 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
..++. -+.|+-+|+=|......- ...+....+||++.. ..+.++-++..+.+
T Consensus 48 ~~C~~-~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~~W~-------- 118 (364)
T cd06390 48 TFCSQ-FSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEHYKWQ-------- 118 (364)
T ss_pred HHHHH-hhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHHcCCc--------
Confidence 34454 467999998886542222 477778888998863 34555555555665
Q ss_pred eEEEEechhhhchhh---HHHHHHhcCCeE
Q 020005 217 RIGVLAKNAILTAGF---YQEKLQHEGFEV 243 (332)
Q Consensus 217 rVGlLaT~~T~~s~l---Y~~~l~~~Gi~v 243 (332)
+|.++.-.. ..... +.+.+++.|+++
T Consensus 119 ~v~iIYd~d-~g~~~lq~l~~~~~~~~~~I 147 (364)
T cd06390 119 KFVYIYDAD-RGLSVLQKVLDTAAEKNWQV 147 (364)
T ss_pred EEEEEEeCC-ccHHHHHHHHHhhhccCcee
Confidence 899888433 22222 333455557655
No 342
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=42.40 E-value=2.7e+02 Score=27.87 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCcEEEEe-CCCchhh--HHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMP-CHLSHIW--HDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~-CNTaH~~--~d~l~~~~~iPii~I 194 (332)
....++.|-..|+-+|+-+ .+. +.+ ++-+....+||+|.+
T Consensus 70 ~~~vC~~ll~~GV~AIfg~p~s~-~~~~~v~sic~~l~IP~I~~ 112 (382)
T cd06377 70 LRSVCQTVVVQGVSALLAFPQTR-PELVQLDFVSAALEIPVVSI 112 (382)
T ss_pred HHHHHHhHhhCCeEEEEecCCCH-HHHHHHHHHhcCCCCCEEEe
Confidence 3456777778899999884 654 443 577888889999998
No 343
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=42.23 E-value=1.2e+02 Score=28.92 Aligned_cols=88 Identities=11% Similarity=0.206 Sum_probs=52.5
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
-+++||||-.-+..|=-||.+.+.+.. ..++++++.. ... | .+-..+| .+++
T Consensus 13 ~p~~I~vITs~~gAa~~D~~~~~~~r~---~~~~~~~~p~------~vQ-G--------------~~A~~~I----~~al 64 (319)
T PF02601_consen 13 FPKRIAVITSPTGAAIQDFLRTLKRRN---PIVEIILYPA------SVQ-G--------------EGAAASI----VSAL 64 (319)
T ss_pred CCCEEEEEeCCchHHHHHHHHHHHHhC---CCcEEEEEec------ccc-c--------------cchHHHH----HHHH
Confidence 368999999988889889999888744 3445555440 000 1 1122233 3444
Q ss_pred HHHHHcC----CcEEEEeCCCch---hh-H--HHHhh---hCCCCeeec
Q 020005 159 VFLEKAG----ARCIVMPCHLSH---IW-H--DEVCK---GCSVPFLHV 194 (332)
Q Consensus 159 ~~Le~~G----ad~IvI~CNTaH---~~-~--d~l~~---~~~iPii~I 194 (332)
+.+.+.+ +|+|+|.=-.-. -| | +.|.. .+++|||+-
T Consensus 65 ~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 65 RKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred HHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEe
Confidence 5566554 999999755432 12 2 22222 468999875
No 344
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=42.18 E-value=47 Score=30.31 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCEEEECCCCcc
Q 020005 274 LRIALQVLLVRAVNTVILASDDMQ 297 (332)
Q Consensus 274 l~~~~~~L~~~gad~VILGCTElp 297 (332)
.+++.+.+.+.|+|+||=+=+|.+
T Consensus 196 ~~~la~~l~~~G~D~IiG~H~Hv~ 219 (239)
T cd07381 196 QRELARALIDAGADLVIGHHPHVL 219 (239)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCcC
Confidence 445666777789999998888865
No 345
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=42.15 E-value=2.5e+02 Score=26.46 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=57.7
Q ss_pred HHHHHHcCCcEEEEeCCC------chh-hHHHHhhhCCCCeeechHH-----------------HHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKAGARCIVMPCHL------SHI-WHDEVCKGCSVPFLHVSEC-----------------VAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT------aH~-~~d~l~~~~~iPii~Ive~-----------------t~~~l~~~g~k~~~~~ 213 (332)
+..-++.|||-|=+|.|- ..+ .+..+++.+++|+.=|+.+ -++.+++.|.+
T Consensus 14 a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~Gad----- 88 (248)
T PRK11572 14 ALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFP----- 88 (248)
T ss_pred HHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----
Confidence 344678899999888764 333 3677788889998877543 34556666654
Q ss_pred CCceEEEEechhhhchhhHHHHHHhc-CCeEEe
Q 020005 214 SPLRIGVLAKNAILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
.--+|+|-..+++....-++.++.. ++++..
T Consensus 89 -GvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTF 120 (248)
T PRK11572 89 -GLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTF 120 (248)
T ss_pred -EEEEeeECCCCCcCHHHHHHHHHHhcCCceEE
Confidence 2368999999999988888877765 565543
No 346
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=42.12 E-value=2.2e+02 Score=25.68 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHH--hcCCCCcCCCCceEEEEechh--h--hchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCC--hHH
Q 020005 198 VAKELKE--ANMKPLEAGSPLRIGVLAKNA--I--LTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKD--VEG 269 (332)
Q Consensus 198 t~~~l~~--~g~k~~~~~~~~rVGlLaT~~--T--~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~--~~~ 269 (332)
+++++.+ +|++ |||+++.+. + .+..-|++.++++|++..... . ... ..+..++ +-.
T Consensus 106 a~~~L~~~~~G~~--------~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~-~~~------~~~~~~~ai~~~ 169 (247)
T cd06276 106 ALQEGLEKLKKYK--------KLILVFPNKTAIPKEIKRGFERFCKDYNIETEIIN-D-YEN------REIEKGDLYIIL 169 (247)
T ss_pred HHHHHHHHhcCCC--------EEEEEecCccHhHHHHHHHHHHHHHHcCCCccccc-c-cch------hhccCCcEEEEe
Confidence 5677777 7776 999997543 1 122337888988898643211 0 000 0111111 101
Q ss_pred HHHHHHHHHHHHHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHH
Q 020005 270 ARNLLRIALQVLLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVK 326 (332)
Q Consensus 270 a~~~l~~~~~~L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~ 326 (332)
.......+++.+.+.|. |.-|.|+...++..-. .+ .+..|+ +...+++.+++...
T Consensus 170 ~d~~A~g~~~~l~~~g~~iP~disvigfd~~~~~~~~-~p-~lttv~~~~~~~g~~a~~~L~ 229 (247)
T cd06276 170 SDTDLVFLIKKARESGLLLGKDIGIISYNDTPLKEIL-RN-GITTISTDFENMGKKAAEMVL 229 (247)
T ss_pred CHHHHHHHHHHHHHcCCcCCceeEEEEecCchhhhcc-CC-CceEEecCHHHHHHHHHHHHh
Confidence 12223334445555553 7788888887644211 12 234454 56677777766554
No 347
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=42.03 E-value=3.1e+02 Score=26.76 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=37.0
Q ss_pred eCCChHHHHHHHHHHHHHhccC--CCCCEEE-ecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 020005 87 GGASVDSTLNLLGKLVQLSGEE--NDFPFLL-CSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEK 163 (332)
Q Consensus 87 GGmGp~AT~~~y~kI~~~t~~d--~~~~~vi-~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~ 163 (332)
|| +.+--..|...|++...+. ..+++-+ ++ +.++. ..-.+.++. .+.++.|++
T Consensus 184 GG-slenR~r~~~eiv~~ir~~vg~~~~v~iRl~--------------~~~~~-----~~G~~~~e~----~~~~~~l~~ 239 (343)
T cd04734 184 GG-SLENRMRFLLEVLAAVRAAVGPDFIVGIRIS--------------GDEDT-----EGGLSPDEA----LEIAARLAA 239 (343)
T ss_pred CC-CHHHHhHHHHHHHHHHHHHcCCCCeEEEEee--------------hhhcc-----CCCCCHHHH----HHHHHHHHh
Confidence 45 5777778888888888764 3344332 11 00000 000122232 345678999
Q ss_pred cC-CcEEEEeCCC
Q 020005 164 AG-ARCIVMPCHL 175 (332)
Q Consensus 164 ~G-ad~IvI~CNT 175 (332)
+| +|+|-|...+
T Consensus 240 ~G~vd~i~vs~g~ 252 (343)
T cd04734 240 EGLIDYVNVSAGS 252 (343)
T ss_pred cCCCCEEEeCCCC
Confidence 98 8999996654
No 348
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=41.78 E-value=74 Score=32.23 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
.+.++-++.-+.+ +|+++..+... ....+.+.+++.|+.+..
T Consensus 161 ~ai~~li~~f~W~--------~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~ 205 (469)
T cd06365 161 LGMVSLMLHFSWT--------WVGLVISDDDRGEQFLSDLREEMQRNGICLAF 205 (469)
T ss_pred HHHHHHHHhcCCe--------EEEEEEecChhHHHHHHHHHHHHHHCCeEEEE
Confidence 3444445555665 89998775432 234566778888988753
No 349
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=41.76 E-value=2.4e+02 Score=26.28 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh---HHHHhhhCCC-----CeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSV-----PFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~~i-----Pii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.+++|.+.|..++++..|+.... .+.++. .++ -++.-..+++.++++... ..++|-++|+.+
T Consensus 24 ~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~-~G~~~~~~~i~ts~~~~~~~l~~~~~------~~~~v~~iG~~~- 95 (279)
T TIGR01452 24 PELLDRLARAGKAALFVTNNSTKSRAEYALKFAR-LGFNGLAEQLFSSALCAARLLRQPPD------APKAVYVIGEEG- 95 (279)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCChhhEecHHHHHHHHHHhhCc------CCCEEEEEcCHH-
Confidence 4556788999988888877764433 344533 333 245555677777776422 123899999853
Q ss_pred hchhhHHHHHHhcCCeEEe
Q 020005 227 LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~vv~ 245 (332)
..+.++.+|++++.
T Consensus 96 -----~~~~l~~~g~~~~~ 109 (279)
T TIGR01452 96 -----LRAELDAAGIRLAG 109 (279)
T ss_pred -----HHHHHHHCCCEEec
Confidence 24567788998763
No 350
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=41.01 E-value=1.2e+02 Score=29.73 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHH---HHHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv~ 245 (332)
.+...+.+++.+.+ |+.|++.+...+.+++++ .|++.|+++.+
T Consensus 14 l~~l~~~l~~~~~~--------~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~ 59 (376)
T cd08193 14 LARLGELLAALGAK--------RVLVVTDPGILKAGLIDPLLASLEAAGIEVTV 59 (376)
T ss_pred HHHHHHHHHHcCCC--------eEEEEcCcchhhCccHHHHHHHHHHcCCeEEE
Confidence 44444555554443 888887766656666665 35566777643
No 351
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=41.00 E-value=2.7e+02 Score=25.04 Aligned_cols=122 Identities=14% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechh--------h--hchhhHHHHHHhcCC-e--EEecCccchhhchHHHHHH-
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNA--------I--LTAGFYQEKLQHEGF-E--VVLPDKATMEHTLIPALDA- 261 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~--------T--~~s~lY~~~l~~~Gi-~--vv~P~~~~q~~~l~~~i~~- 261 (332)
..+++++.+.|.+ +|++++... + .+..-|.+.++++|. . .+.......+. -...+..
T Consensus 101 ~~~~~~l~~~g~~--------~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (270)
T cd01544 101 EKALDYLLELGHT--------RIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLYDPELIYIGDFTVES-GYQLMKEA 171 (270)
T ss_pred HHHHHHHHHcCCC--------cEEEECCCcccccccchhhhHHHHHHHHHHHHcCCCChheEeeCCCCHHH-HHHHHHHH
Confidence 3455666666654 899997642 1 122337888888873 1 22221111110 0111222
Q ss_pred HhcC--C-hHH----HHHHHHHHHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 262 LNRK--D-VEG----ARNLLRIALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 262 ik~g--~-~~~----a~~~l~~~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+++. . .+. .......+++.+.+.| -|.-|.|+...+... ...+ .+..|+ ....+++.+++.....
T Consensus 172 l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 248 (270)
T cd01544 172 LKSLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFNDIEVAK-YVSP-PLSTVKIDTEEMGETAVDLLLER 248 (270)
T ss_pred HhccCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECChhHHh-hcCC-CCceecCCHHHHHHHHHHHHHHH
Confidence 3332 2 221 1233344455565555 378899998877532 1111 122332 2345666666665443
No 352
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=41.00 E-value=1.7e+02 Score=29.25 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=37.4
Q ss_pred CCceEEEEechhhhchhhHHHHHHhcCCeEEecCccchh-hchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 214 SPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATME-HTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~-~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
..+||.|.+-. ...-+ +.+.|.+.|++++........ .......+.+..+-.-....-+.++.+.+.+.++|.+|-+
T Consensus 273 ~Gkrv~i~gd~-~~~~~-l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~~~pDllig~ 350 (407)
T TIGR01279 273 RGKKIFFFGDN-LLELP-LARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIRATRPDLVVTG 350 (407)
T ss_pred CCCEEEEECCc-hHHHH-HHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHHhcCCCEEecC
Confidence 35688887653 33222 567778889998764321111 1111112333322110011223344455566799966654
Q ss_pred C
Q 020005 293 S 293 (332)
Q Consensus 293 C 293 (332)
-
T Consensus 351 ~ 351 (407)
T TIGR01279 351 L 351 (407)
T ss_pred c
Confidence 4
No 353
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=40.97 E-value=84 Score=28.02 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeC-CCchhhHHHHh-------hhCCCCeeechHHHHHHHHHhcCCC--CcC---------
Q 020005 152 ENLRRKRVFLEKAGARCIVMPC-HLSHIWHDEVC-------KGCSVPFLHVSECVAKELKEANMKP--LEA--------- 212 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~C-NTaH~~~d~l~-------~~~~iPii~Ive~t~~~l~~~g~k~--~~~--------- 212 (332)
..+....+.|.....|.|++.+ |....|++.++ ...+++++-+.+.|++.+.+.|+++ .+.
T Consensus 29 ~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG~~Ta~~l~~~G~~~~~~~~~~~~s~~L~ 108 (231)
T PF02602_consen 29 ASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVGPKTAEALREYGFQPDFVPSSEGSSEGLA 108 (231)
T ss_dssp HHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESSHHHHHHHHHTT-EECEE-TTSSSHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEcHHHHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred ------CCCceEEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 213 ------GSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 213 ------~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
..++||.++..... .+.+.+.|++.|+++..
T Consensus 109 ~~l~~~~~~~~vl~~~g~~~--~~~l~~~L~~~g~~v~~ 145 (231)
T PF02602_consen 109 ELLKEQLRGKRVLILRGEGG--RPDLPEKLREAGIEVTE 145 (231)
T ss_dssp GGHHHCCTTEEEEEEESSSS--CHHHHHHHHHTTEEEEE
T ss_pred HHHHhhCCCCeEEEEcCCCc--cHHHHHHHHHCCCeEEE
No 354
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=40.93 E-value=3.6e+02 Score=26.44 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=47.1
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHHhc-CCh---H---HHHHHHHHHHHHHHhCCCC--
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDALNR-KDV---E---GARNLLRIALQVLLVRAVN-- 287 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~ik~-g~~---~---~a~~~l~~~~~~L~~~gad-- 287 (332)
+.++.|+....+- +.+++.|+..+. ++.+.+...+ ++.+.+ |.. . ...+.+..+++.+.+.|.+
T Consensus 90 i~~~stpfd~~sv---d~l~~~~v~~~KIaS~~~~n~pL---L~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~ 163 (329)
T TIGR03569 90 IEFLSTPFDLESA---DFLEDLGVPRFKIPSGEITNAPL---LKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDS 163 (329)
T ss_pred CcEEEEeCCHHHH---HHHHhcCCCEEEECcccccCHHH---HHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcC
Confidence 5588887775432 567778888774 7766665323 444332 211 0 1356677888888888874
Q ss_pred -EEEECCCC-cc
Q 020005 288 -TVILASDD-MQ 297 (332)
Q Consensus 288 -~VILGCTE-lp 297 (332)
.++|=||- +|
T Consensus 164 ~i~llhC~s~YP 175 (329)
T TIGR03569 164 NITLLHCTTEYP 175 (329)
T ss_pred cEEEEEECCCCC
Confidence 88888985 45
No 355
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=40.73 E-value=2.7e+02 Score=24.96 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
..+.++.++++|+.++-+ ++ -..++++++.+++||+.|
T Consensus 25 ~~~~a~a~~~~G~~~~~~--~~-~~~i~~i~~~~~~Pil~~ 62 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRA--NG-VEDIKAIRAVVDVPIIGI 62 (221)
T ss_pred HHHHHHHHHHCCCeEEEc--CC-HHHHHHHHHhCCCCEEEE
Confidence 345667788999987776 33 334688888889999855
No 356
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=40.39 E-value=2.5e+02 Score=26.76 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHHHcCCcEEEEe----------CCCchhhHHHH-------hhhC-------CCCeeec-------hHHHHHHHHHhc
Q 020005 158 RVFLEKAGARCIVMP----------CHLSHIWHDEV-------CKGC-------SVPFLHV-------SECVAKELKEAN 206 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~----------CNTaH~~~d~l-------~~~~-------~iPii~I-------ve~t~~~l~~~g 206 (332)
++.++++|+|+|++. -+|.+.-+|++ +... ++||.+- ++.+.+.+++.|
T Consensus 29 A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~G 108 (261)
T PF02548_consen 29 ARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLMKEAG 108 (261)
T ss_dssp HHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHHHhcC
Confidence 466889999999987 45666555543 3222 4555554 222333344444
Q ss_pred CCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHH-hcCChHHHHHHHHHHHHHHHhC
Q 020005 207 MKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDAL-NRKDVEGARNLLRIALQVLLVR 284 (332)
Q Consensus 207 ~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~i-k~g~~~~a~~~l~~~~~~L~~~ 284 (332)
.. -|=+=|-..+. . .-+.|.+.|+.|+- -.-.-|. .. .+... ..|...+....+.+-...|.+.
T Consensus 109 ad--------aVKlEGg~~~~--~-~i~~l~~~GIPV~gHiGLtPQ~--~~-~~GGyr~qGk~~~~a~~l~~~A~ale~A 174 (261)
T PF02548_consen 109 AD--------AVKLEGGAEIA--E-TIKALVDAGIPVMGHIGLTPQS--VH-QLGGYRVQGKTAEEAEKLLEDAKALEEA 174 (261)
T ss_dssp -S--------EEEEEBSGGGH--H-HHHHHHHTT--EEEEEES-GGG--HH-HHTSS--CSTSHHHHHHHHHHHHHHHHH
T ss_pred CC--------EEEeccchhHH--H-HHHHHHHCCCcEEEEecCchhh--ee-ccCCceEEecCHHHHHHHHHHHHHHHHc
Confidence 43 45555544332 2 23456677877642 0000121 10 01111 1344433334444555678888
Q ss_pred CCCEEEECCCC
Q 020005 285 AVNTVILASDD 295 (332)
Q Consensus 285 gad~VILGCTE 295 (332)
||-.|+|-|.-
T Consensus 175 Gaf~ivlE~vp 185 (261)
T PF02548_consen 175 GAFAIVLECVP 185 (261)
T ss_dssp T-SEEEEESBB
T ss_pred CccEEeeecCH
Confidence 99999999864
No 357
>PRK06801 hypothetical protein; Provisional
Probab=40.39 E-value=1.1e+02 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWH 180 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~ 180 (332)
++.++.++.|+|+++++--|.|-.+
T Consensus 160 ~a~~f~~~tgvD~LAvaiGt~Hg~y 184 (286)
T PRK06801 160 LARDFVDRTGIDALAVAIGNAHGKY 184 (286)
T ss_pred HHHHHHHHHCcCEEEeccCCCCCCC
Confidence 3445566789999999999999854
No 358
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.23 E-value=1.8e+02 Score=22.88 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=45.6
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
+++|-++=|.|- ||--+.+++.+....+ ++++-+... + +.+.-.
T Consensus 3 ~~~ILl~C~~G~-sSS~l~~k~~~~~~~~-gi~~~v~a~------------~----------------------~~~~~~ 46 (95)
T TIGR00853 3 ETNILLLCAAGM-STSLLVNKMNKAAEEY-GVPVKIAAG------------S----------------------YGAAGE 46 (95)
T ss_pred ccEEEEECCCch-hHHHHHHHHHHHHHHC-CCcEEEEEe------------c----------------------HHHHHh
Confidence 456666666663 3445778988877654 555544330 0 001001
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhh---hCCCCeeech
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCK---GCSVPFLHVS 195 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~---~~~iPii~Iv 195 (332)
.+ ..+|+|+++-...|.+ +++++ ..++|+..|-
T Consensus 47 ~~--~~~Dvill~pqi~~~~-~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 47 KL--DDADVVLLAPQVAYML-PDLKKETDKKGIPVEVIN 82 (95)
T ss_pred hc--CCCCEEEECchHHHHH-HHHHHHhhhcCCCEEEeC
Confidence 12 3579999988887755 55554 4578988863
No 359
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=40.16 E-value=1.2e+02 Score=28.88 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=55.5
Q ss_pred cCeEEEEe--CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchh---hhhhc-------CCCchhhccccCCCCCCCH
Q 020005 80 ANTVGIVG--GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNK---ELLSH-------DRSSFSSLNCKGGGVQLDD 147 (332)
Q Consensus 80 ~k~IGIiG--GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~---~ll~~-------~~~~~~~~~~~~~~~~~d~ 147 (332)
...|||-| |.|=-. |...+.....+.++=-=|+.-||.=|- .||++ ..||--|++.. .+.+.-
T Consensus 29 a~~iGiTG~PGaGKST---li~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~--atRG~l 103 (266)
T PF03308_consen 29 AHVIGITGPPGAGKST---LIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSM--ATRGSL 103 (266)
T ss_dssp SEEEEEEE-TTSSHHH---HHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----SSH
T ss_pred ceEEEeeCCCCCcHHH---HHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeec--CcCCCC
Confidence 45899999 777655 566666666554222224445777652 22222 23444444322 245566
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
-.+.....+.++.|+.+|.|.|+|=+--.-.
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQ 134 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQ 134 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSST
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 7888889999999999999999997655433
No 360
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.11 E-value=1.2e+02 Score=30.42 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=20.2
Q ss_pred CCcCCCCceEEEEechhhhchhhHHHHHHhc--CCeEEe
Q 020005 209 PLEAGSPLRIGVLAKNAILTAGFYQEKLQHE--GFEVVL 245 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~ 245 (332)
|+|.. ++||||+..+..-.-+=+.+.+.++ ++++.+
T Consensus 130 ~lP~~-p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~ 167 (438)
T PRK00286 130 PLPFF-PKRIGVITSPTGAAIRDILTVLRRRFPLVEVII 167 (438)
T ss_pred CCCCC-CCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEE
Confidence 44433 3599999986654333344455554 355543
No 361
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=40.07 E-value=3.6e+02 Score=26.22 Aligned_cols=190 Identities=13% Similarity=0.133 Sum_probs=94.6
Q ss_pred ccCeEEEEe--CCChHHHHHHHHHHHHHhcc----C-CCCCEEEecCCcchhh------hhhcCCCchhhccccCCCCCC
Q 020005 79 QANTVGIVG--GASVDSTLNLLGKLVQLSGE----E-NDFPFLLCSDPLLNKE------LLSHDRSSFSSLNCKGGGVQL 145 (332)
Q Consensus 79 ~~k~IGIiG--GmGp~AT~~~y~kI~~~t~~----d-~~~~~vi~s~p~ip~~------ll~~~~~~~~~~~~~~~~~~~ 145 (332)
.|.-+-|+| |+|=-.-+ ++..+.-+. + +..|++...-|.-|+. |+..---|+. +.
T Consensus 60 Rmp~lLivG~snnGKT~Ii---~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~---------~~ 127 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMII---ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR---------PR 127 (302)
T ss_pred CCCceEEecCCCCcHHHHH---HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC---------CC
Confidence 577789999 78876644 444444342 2 6789999887777752 3321111221 11
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCC------Cchh---h---HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCC
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCH------LSHI---W---HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAG 213 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CN------TaH~---~---~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~ 213 (332)
+. ....-......|...|+..++|==. |... + +..|.+...+|++.+...-+..+..... .-+
T Consensus 128 ~~--~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~--QLa- 202 (302)
T PF05621_consen 128 DR--VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP--QLA- 202 (302)
T ss_pred CC--HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH--HHH-
Confidence 11 1122223346788999999998321 1111 2 3445556678888775443333322211 000
Q ss_pred CCceEEEEe-chhhhchhhHHHHHHhc--CCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEE
Q 020005 214 SPLRIGVLA-KNAILTAGFYQEKLQHE--GFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTV 289 (332)
Q Consensus 214 ~~~rVGlLa-T~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~V 289 (332)
.|.-.+. .++... .-|++.+... .+..-.|+.-.. ..+...+.+...|.+-+-...+..+...-...|.+.|
T Consensus 203 --~RF~~~~Lp~W~~d-~ef~~LL~s~e~~LPLr~~S~l~~-~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~I 277 (302)
T PF05621_consen 203 --SRFEPFELPRWELD-EEFRRLLASFERALPLRKPSNLAS-PELARRIHERSEGLIGELSRLLNAAAIAAIRSGEERI 277 (302)
T ss_pred --hccCCccCCCCCCC-cHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCcee
Confidence 0222221 122222 2355555443 222222333211 2233334555566665556677766666666777765
No 362
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=39.94 E-value=1.7e+02 Score=27.42 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCcEEEEe-CCC---------------chhhHHHHhhhCCCCe
Q 020005 155 RRKRVFLEKAGARCIVMP-CHL---------------SHIWHDEVCKGCSVPF 191 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~-CNT---------------aH~~~d~l~~~~~iPi 191 (332)
.+.++.+.+.||+.|=|. +.| .....+.+++.+++|+
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl 78 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPI 78 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 344566788999999996 333 2234566776668884
No 363
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=39.79 E-value=1.1e+02 Score=26.41 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=33.8
Q ss_pred HHHHHHcCCcE-EEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHH
Q 020005 158 RVFLEKAGARC-IVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKE 204 (332)
Q Consensus 158 ~~~Le~~Gad~-IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~ 204 (332)
++.|++.|++. ..+|....-++++.+.+..++.++..-.+.......
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA 51 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAA 51 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHH
Confidence 46799999994 566777667788999765578888887665444333
No 364
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=39.64 E-value=1.5e+02 Score=28.62 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=78.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCe--eechHHHHHHHHHhcCCCCcCCCCceEEEEechh--hhchhhH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPF--LHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA--ILTAGFY 232 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPi--i~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~--T~~s~lY 232 (332)
++.|+ .|+|.++.-- .|.- ..+++..+++|+ ++.....++.+++. .+ ..-|++... ......+
T Consensus 111 A~ll~-~~~d~vit~D--lH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~-~~--------~~vVVsPd~g~~~~a~~l 178 (301)
T PRK07199 111 ARLLS-GSFDRLVTVD--PHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH-VP--------RPLLIGPDEESEQWVAAV 178 (301)
T ss_pred HHHHH-hhcCeEEEEe--ccchhhHHhcCcccCCccccchHHHHHHHHHhc-CC--------CcEEEEeCCChHHHHHHH
Confidence 45565 5898765533 3431 367888888998 55555666666543 22 334444322 2222222
Q ss_pred HHHHHhcCCeEEecCc----cchhhchHHHHHHHhcCCh---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCCC-
Q 020005 233 QEKLQHEGFEVVLPDK----ATMEHTLIPALDALNRKDV---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLLP- 301 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~----~~q~~~l~~~i~~ik~g~~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~~- 301 (332)
.+ ..|+.+..-.. ..+..........++..+. + ..-..+.++++.|++.||..|.+.|||--+--+
T Consensus 179 a~---~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a 255 (301)
T PRK07199 179 AE---RAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDA 255 (301)
T ss_pred HH---HhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHH
Confidence 22 22554322111 1111110000011222111 2 245678888999999999999999999422111
Q ss_pred ------C-C------C--CCCCceechHHHHHHHHHH
Q 020005 302 ------P-D------D--PLLKKCIDPMDALARSTIK 323 (332)
Q Consensus 302 ------~-~------~--~~~ipvID~~~~lA~a~v~ 323 (332)
. . + +.+.+++|-...+|+++.+
T Consensus 256 ~~~l~~~~i~~iv~Tdti~~~~~~~sva~lla~~i~~ 292 (301)
T PRK07199 256 YSALAAAGIARVVSTDTVPHPSNAISLAPLLAEALRR 292 (301)
T ss_pred HHHHHhCCCCEEEEeCCccCCCCEEehHHHHHHHHHH
Confidence 0 0 1 1123578999999888754
No 365
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=39.61 E-value=1e+02 Score=30.61 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=48.0
Q ss_pred cCCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|+||+.-.- .|+.+.+.++ .++|+++=.|...+.. ..+ .|||-||.| |-.+.+....|+..|
T Consensus 61 ~~~d~vv~sp~i~~~~p~~~~a~~-~~i~i~~~~e~~~~~~---~~~--------~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 61 NNADLVVKSPGIPPDHPLVQAAAK-RGIPVVGDIELFLRLV---PLP--------VVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred ccCCEEEECCCCCCCCHHHHHHHH-CCCcEEEHHHHHHhhc---CCC--------EEEEECCCCHHHHHHHHHHHHHhcC
Confidence 368877776533 3566655553 5899999887765543 222 799999987 445567778888878
Q ss_pred CeEEe
Q 020005 241 FEVVL 245 (332)
Q Consensus 241 i~vv~ 245 (332)
..+..
T Consensus 129 ~~~~~ 133 (433)
T TIGR01087 129 LKAFL 133 (433)
T ss_pred CCeEE
Confidence 76554
No 366
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=39.55 E-value=1.7e+02 Score=29.30 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred EEEeCCChHH------------HHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHH
Q 020005 84 GIVGGASVDS------------TLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI 150 (332)
Q Consensus 84 GIiGGmGp~A------------T~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i 150 (332)
|++|..++.+ +++.|-.......++ ...|++. | +..+.++-++
T Consensus 74 g~~~~~~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIa-S--------i~~~~s~~~~--------------- 129 (385)
T PLN02495 74 GANGSAKGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIA-S--------IMEEYNKDAW--------------- 129 (385)
T ss_pred ccccccccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEE-E--------ccCCCCHHHH---------------
Q ss_pred HHHHHHHHHHHHHcCCcEEE--EeC-CC----------------chhhHHHHhhhCCCC-------eeechHHHHHHHHH
Q 020005 151 VENLRRKRVFLEKAGARCIV--MPC-HL----------------SHIWHDEVCKGCSVP-------FLHVSECVAKELKE 204 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~Iv--I~C-NT----------------aH~~~d~l~~~~~iP-------ii~Ive~t~~~l~~ 204 (332)
.+.++.+++.|||+|- +.| |+ .......+++..++| -+.-+...++.+.+
T Consensus 130 ----~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 130 ----EEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred ----HHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Q ss_pred hcCCCCcCCCCceEEEEec
Q 020005 205 ANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 205 ~g~k~~~~~~~~rVGlLaT 223 (332)
.|.+ =|.+.-|
T Consensus 206 ~Gad--------gi~liNT 216 (385)
T PLN02495 206 SGCE--------GVAAINT 216 (385)
T ss_pred hCCC--------EEEEecc
No 367
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=39.13 E-value=58 Score=25.03 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeE
Q 020005 197 CVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEV 243 (332)
Q Consensus 197 ~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~v 243 (332)
..++.+.+.|++ |+||.+|- +.|++.|+++
T Consensus 4 ~~~~~l~~lG~~-----------i~AT~gTa------~~L~~~Gi~~ 33 (90)
T smart00851 4 ELAKRLAELGFE-----------LVATGGTA------KFLREAGLPV 33 (90)
T ss_pred HHHHHHHHCCCE-----------EEEccHHH------HHHHHCCCcc
Confidence 345667777654 79999992 4467789875
No 368
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.88 E-value=3.2e+02 Score=27.09 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHhccC--CCCCEEE-ecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 020005 90 SVDSTLNLLGKLVQLSGEE--NDFPFLL-CSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGA 166 (332)
Q Consensus 90 Gp~AT~~~y~kI~~~t~~d--~~~~~vi-~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Ga 166 (332)
+.+--..|...|++..++. +.+|+.+ +| +. +.+. +. .....+.++. .+.++.|++.|+
T Consensus 189 slenR~Rf~~eii~air~~vG~d~~v~vRis-~~--------~~~~--~~----~~~g~~~~e~----~~~~~~l~~~gv 249 (361)
T cd04747 189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFS-QW--------KQQD--YT----ARLADTPDEL----EALLAPLVDAGV 249 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC-cc--------cccc--cc----cCCCCCHHHH----HHHHHHHHHcCC
Confidence 5666778888888888765 4566655 22 10 0000 00 0001233333 345567899999
Q ss_pred cEEEEeCC
Q 020005 167 RCIVMPCH 174 (332)
Q Consensus 167 d~IvI~CN 174 (332)
|+|=+.|.
T Consensus 250 d~i~vs~g 257 (361)
T cd04747 250 DIFHCSTR 257 (361)
T ss_pred CEEEecCC
Confidence 99888775
No 369
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=38.77 E-value=1.1e+02 Score=29.94 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=58.3
Q ss_pred cEEEEeCCCchhh-HHHHhhhCCCCeeech-----HHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcC
Q 020005 167 RCIVMPCHLSHIW-HDEVCKGCSVPFLHVS-----ECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEG 240 (332)
Q Consensus 167 d~IvI~CNTaH~~-~d~l~~~~~iPii~Iv-----e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~G 240 (332)
..|+..-|-|... ...+.+..+.|++--- +.+..++.+.+.+ +|.++|-+-.+... |++.|++.|
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI~~lnpd--------~VLIIGGp~AVs~~-yE~~Lks~G 100 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEIIELNPD--------LVLIIGGPIAVSPN-YENALKSLG 100 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHHHhhCCc--------eEEEECCCCcCChh-HHHHHHhCC
Confidence 7788888888877 5778888888888322 4667778887654 89999987777644 999999999
Q ss_pred CeEEecCccch
Q 020005 241 FEVVLPDKATM 251 (332)
Q Consensus 241 i~vv~P~~~~q 251 (332)
++|..-....+
T Consensus 101 itV~RigG~nR 111 (337)
T COG2247 101 ITVKRIGGANR 111 (337)
T ss_pred cEEEEecCcch
Confidence 99987554433
No 370
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=38.61 E-value=1.2e+02 Score=28.40 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=48.7
Q ss_pred EEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhc-------CChHH-HHHHHHHHHHHHHhCCCCEE
Q 020005 219 GVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNR-------KDVEG-ARNLLRIALQVLLVRAVNTV 289 (332)
Q Consensus 219 GlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~-------g~~~~-a~~~l~~~~~~L~~~gad~V 289 (332)
-++||.-+=+-..+...+.++|+.++.-+++.--+.+..++++... |+-+- ..+.+..+++.+.+.|+|-+
T Consensus 47 ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 47 IVVATSDKEEDDALEEVCRSHGFYVFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred eEEEecCCcchhHHHHHHHHcCeeEecCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 3777877777778899999999999997766433345545555443 33221 34677778888888898754
No 371
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=38.57 E-value=1.4e+02 Score=29.88 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCC---------chhh-HHHHhhhCCCCeee--c-hHHHHHHHHHhcC
Q 020005 155 RRKRVFLEKAGARCIVMPCHL---------SHIW-HDEVCKGCSVPFLH--V-SECVAKELKEANM 207 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT---------aH~~-~d~l~~~~~iPii~--I-ve~t~~~l~~~g~ 207 (332)
.+.++.++++|+|+|++-+-| +++. +.++.+..++||+. + -...+.++.+.|.
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGa 210 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGA 210 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCC
Confidence 455677889999999986433 2222 44666778999985 2 2233444555665
No 372
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=38.41 E-value=2.5e+02 Score=24.52 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (332)
|.+...|.+..+++-+.... .+++++++. + +..|... ..+.+.+.+.+...++.+.+.|++
T Consensus 50 Gi~G~tt~~~~~rl~~~l~~-~~pd~Vii~--------~-GtND~~~---------~~~~~~~~~~l~~li~~~~~~~~~ 110 (191)
T PRK10528 50 SISGDTSQQGLARLPALLKQ-HQPRWVLVE--------L-GGNDGLR---------GFPPQQTEQTLRQIIQDVKAANAQ 110 (191)
T ss_pred CcCcccHHHHHHHHHHHHHh-cCCCEEEEE--------e-ccCcCcc---------CCCHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777654432 255666655 1 1122211 124566777788888888888999
Q ss_pred EEEEe
Q 020005 168 CIVMP 172 (332)
Q Consensus 168 ~IvI~ 172 (332)
.+++.
T Consensus 111 ~ill~ 115 (191)
T PRK10528 111 PLLMQ 115 (191)
T ss_pred EEEEE
Confidence 88874
No 373
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=38.16 E-value=1.7e+02 Score=22.56 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHH---HhhhCCCCeeechHHHHHHHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDE---VCKGCSVPFLHVSECVAKELKE 204 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~---l~~~~~iPii~Ive~t~~~l~~ 204 (332)
+..+.+++..+.+++|+.|+.....+. +.+..+||++... +-+++-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~--s~~eLG~ 67 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD--SMKKLGK 67 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC--CHHHHHH
Confidence 344667888899999999998876444 4566789998875 3344443
No 374
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=38.09 E-value=1.2e+02 Score=28.57 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=52.2
Q ss_pred cchhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhh-hhh-cCCCchhhccccCCCCCCCHHH
Q 020005 73 SDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKE-LLS-HDRSSFSSLNCKGGGVQLDDSL 149 (332)
Q Consensus 73 ~~~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~-ll~-~~~~~~~~~~~~~~~~~~d~~~ 149 (332)
....|...+.|-++| |.+-..+.++.+++.+. ..+...++|++.+-. +.. ...|-+-.+ ...+...+
T Consensus 123 av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~i-----g~~~~~~~d~~~~~~~~~~~~~~Dv~i~i-----S~sG~t~e 192 (281)
T COG1737 123 AVELLAKARRIYFFGLGSSGLVASDLAYKLMRI-----GLNVVALSDTHGQLMQLALLTPGDVVIAI-----SFSGYTRE 192 (281)
T ss_pred HHHHHHcCCeEEEEEechhHHHHHHHHHHHHHc-----CCceeEecchHHHHHHHHhCCCCCEEEEE-----eCCCCcHH
Confidence 455566778888887 55566666666776654 355566666665421 111 111211111 11122223
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++...+.|+..|+|..+...+.
T Consensus 193 ----~i~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 193 ----IVEAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred ----HHHHHHHHHHCCCcEEEEcCCCCCch
Confidence 34556678899999999988865544
No 375
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=38.04 E-value=34 Score=33.87 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
++.++.++-|+|+++++--|+|-.|.
T Consensus 175 eA~~Fv~~TgvD~LAvaiGt~HG~Yk 200 (347)
T TIGR01521 175 EAADFVKKTKVDALAVAIGTSHGAYK 200 (347)
T ss_pred HHHHHHHHHCcCEEehhcccccCCcC
Confidence 45567888999999999999999875
No 376
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=37.97 E-value=4.3e+02 Score=26.46 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=13.5
Q ss_pred eEEEEechhh---hchhhHHHHHHhcC
Q 020005 217 RIGVLAKNAI---LTAGFYQEKLQHEG 240 (332)
Q Consensus 217 rVGlLaT~~T---~~s~lY~~~l~~~G 240 (332)
+|+++..... -....+.+.+++.|
T Consensus 174 ~Vaii~~~~~yg~~~~~~~~~~~~~~g 200 (463)
T cd06376 174 YVSTLASEGNYGESGVEAFTQISREAG 200 (463)
T ss_pred EEEEEEeCChHHHHHHHHHHHHHHHcC
Confidence 8999974322 22334555666654
No 377
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.71 E-value=1.4e+02 Score=24.44 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=49.6
Q ss_pred hhhhccCeEEEEe-CCChHHHHHHHHHHHHHhc--cC-------CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCC
Q 020005 75 ALLNQANTVGIVG-GASVDSTLNLLGKLVQLSG--EE-------NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQ 144 (332)
Q Consensus 75 ~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~--~d-------~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~ 144 (332)
..+...+.|=++| |.+...+.++..|+.+... .. .|-|+...+ ..+++-.+. .
T Consensus 8 ~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~-----------~~~~vi~is------~ 70 (153)
T cd05009 8 EKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVD-----------EGTPVIFLA------P 70 (153)
T ss_pred HHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhcc-----------CCCcEEEEe------c
Confidence 3456688999999 8888899999999988763 11 233332221 111221110 0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNT 175 (332)
.+ +-.+.+.+.++++++.|+..++|..+.
T Consensus 71 ~g--~t~~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 71 ED--RLEEKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CC--hhHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 11 111224556678899999999998775
No 378
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=37.45 E-value=1.2e+02 Score=29.48 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=20.1
Q ss_pred CCceEEEEechhhh--------chhhHHHHHHhcCCeEE
Q 020005 214 SPLRIGVLAKNAIL--------TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~T~--------~s~lY~~~l~~~Gi~vv 244 (332)
...||+|+.|-.-+ ...+.+..|++.|.+++
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~ 196 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELV 196 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEE
Confidence 34589999984311 13355667888888764
No 379
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=37.40 E-value=1.3e+02 Score=27.52 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=37.8
Q ss_pred hhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHH--HHHHHHHHHHHHHhCCCCEEEECC
Q 020005 230 GFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEG--ARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 230 ~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~--a~~~l~~~~~~L~~~gad~VILGC 293 (332)
.+|+..|++-|++|+++++...+ +. -..++....+- ..+.+.--+..|.++|+|.|.+=|
T Consensus 15 p~W~~FF~~LG~~Vv~S~~T~k~--i~--~~G~~~~~~e~C~P~Kl~hGHv~~L~~k~vD~IF~P~ 76 (221)
T PF09989_consen 15 PFWQTFFTELGFEVVLSPPTNKE--IL--DKGVKSAPSEFCFPVKLAHGHVADLLEKGVDYIFLPR 76 (221)
T ss_pred HHHHHHHHHcCCEEEECCCCcHH--HH--HHHhhhCCCCcchhHHHHHHHHHHHHhCCCCEEEECC
Confidence 57888888899999997765443 21 12233211111 234555556678889999999855
No 380
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=37.35 E-value=1.5e+02 Score=26.84 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCcEEEE-eCCCch-------hhHHHHhhhCCCCeee-----chHHHHHHHHHhcCCCCcCCCCceEEEE
Q 020005 155 RRKRVFLEKAGARCIVM-PCHLSH-------IWHDEVCKGCSVPFLH-----VSECVAKELKEANMKPLEAGSPLRIGVL 221 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI-~CNTaH-------~~~d~l~~~~~iPii~-----Ive~t~~~l~~~g~k~~~~~~~~rVGlL 221 (332)
.+.++.+++.|++.+.+ ..+..- ..+.++.+.+++|++= -.+.+ +.+.+.|.. ..++
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~-~~~~~~G~~---------~vil 102 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDA-KKLLSLGAD---------KVSI 102 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHH-HHHHHcCCC---------EEEE
Confidence 34566788999985544 444331 1367888888888642 22333 334455543 3478
Q ss_pred echhhhchhhHHHHHHhcCCe
Q 020005 222 AKNAILTAGFYQEKLQHEGFE 242 (332)
Q Consensus 222 aT~~T~~s~lY~~~l~~~Gi~ 242 (332)
+|..--...++.+..+.+|-+
T Consensus 103 g~~~l~~~~~~~~~~~~~~~~ 123 (232)
T TIGR03572 103 NTAALENPDLIEEAARRFGSQ 123 (232)
T ss_pred ChhHhcCHHHHHHHHHHcCCc
Confidence 875544556777777777654
No 381
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.35 E-value=60 Score=27.91 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT 175 (332)
.+.++..++.|||++.+.++.
T Consensus 68 ~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 68 VAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHcCCCEEEEeccH
Confidence 445677889999999998875
No 382
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.31 E-value=2.1e+02 Score=30.27 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH-HHHhhhCCCCeeechHHH-----HH---HHHHhcCCCCcCCCCceEEEEechhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECV-----AK---ELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~-d~l~~~~~iPii~Ive~t-----~~---~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+.++..+..|+++ +|++.-....+ --+...+..|||++.-.+ .. .+.++ ++.--|+.++-.+.
T Consensus 456 ~~~~~~~~~~~~v-~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~-------p~g~pv~~v~i~~~ 527 (577)
T PLN02948 456 SYARSAHSRGLQV-IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQM-------PRGVPVATVAIGNA 527 (577)
T ss_pred HHHHHHHHCCCCE-EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcC-------CCCCeEEEEecCCh
Confidence 3445677788884 34444333332 456667789999874321 11 22333 11123788877777
Q ss_pred hchhhHHHH
Q 020005 227 LTAGFYQEK 235 (332)
Q Consensus 227 ~~s~lY~~~ 235 (332)
...+++.-.
T Consensus 528 ~~aa~~a~~ 536 (577)
T PLN02948 528 TNAGLLAVR 536 (577)
T ss_pred HHHHHHHHH
Confidence 666766543
No 383
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=37.19 E-value=2.6e+02 Score=27.12 Aligned_cols=116 Identities=15% Similarity=0.028 Sum_probs=64.1
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
-+.|.|.||-.|.-..++|..+++...+. .++.+..++...+.-.....+. . ..+.+
T Consensus 87 ~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~--------------~--------~~e~l 144 (343)
T TIGR03551 87 ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGL--------------S--------VEEAL 144 (343)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCC--------------C--------HHHHH
Confidence 46799999988877788888888877654 3455444331111000000000 0 13445
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCC---CCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhh
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCS---VPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL 227 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~---iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~ 227 (332)
+.|+++|++.+. .|..-. -+++.+... ++.=. .-.+++.+++.|++ ..-.+++|-..|.
T Consensus 145 ~~LkeAGl~~i~---~~~~E~~~~~v~~~i~~~~~~~~~-~~~~i~~a~~~Gi~------v~s~~i~G~~Et~ 207 (343)
T TIGR03551 145 KRLKEAGLDSMP---GTAAEILDDEVRKVICPDKLSTAE-WIEIIKTAHKLGIP------TTATIMYGHVETP 207 (343)
T ss_pred HHHHHhCccccc---CcchhhcCHHHHHhcCCCCCCHHH-HHHHHHHHHHcCCc------ccceEEEecCCCH
Confidence 779999999774 343333 367766542 22211 23566778888875 1124466655554
No 384
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=36.97 E-value=1.2e+02 Score=31.12 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=50.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
-+++||||-+-...|=-|....+.+.. ..++++++.-. .. |+ +-..+ +.+++
T Consensus 134 ~p~~IGVITS~tgAairDIl~~~~rR~---P~~~viv~pt~------VQ-G~--------------~A~~e----Iv~aI 185 (440)
T COG1570 134 FPKKIGVITSPTGAALRDILHTLSRRF---PSVEVIVYPTL------VQ-GE--------------GAAEE----IVEAI 185 (440)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHHhhC---CCCeEEEEecc------cc-CC--------------CcHHH----HHHHH
Confidence 478999996555555444444443322 56888887611 00 11 11223 34455
Q ss_pred HHHHHcC-CcEEEEeCCCchh---h-H-HH-Hh---hhCCCCeeech
Q 020005 159 VFLEKAG-ARCIVMPCHLSHI---W-H-DE-VC---KGCSVPFLHVS 195 (332)
Q Consensus 159 ~~Le~~G-ad~IvI~CNTaH~---~-~-d~-l~---~~~~iPii~Iv 195 (332)
+.+.+.+ +|+|+++=-.-.. | | || +. ..+.+|||+-+
T Consensus 186 ~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAV 232 (440)
T COG1570 186 ERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAV 232 (440)
T ss_pred HHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeec
Confidence 5677766 9999998665433 2 2 22 22 24689998864
No 385
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.78 E-value=3.1e+02 Score=24.47 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=75.1
Q ss_pred HHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.+.+.++|.|++...... ..+.++.+ .++|++-+ +..+++++.+.|.+
T Consensus 47 ~i~~~~~~~~dgiii~~~~~~~~~~~~~~~-~~~pvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~-------- 117 (269)
T cd06293 47 YLRWLDTNHVDGLIFVTNRPDDGALAKLIN-SYGNIVLVDEDVPGAKVPKVFCDNEQGGRLATRHLARAGHR-------- 117 (269)
T ss_pred HHHHHHHCCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCc--------
Confidence 345677889998888643222 22333322 13444333 23455667776654
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L 281 (332)
+|++++.... .+..=|.+.++++|+.. +.......+. -.+.++ .++... .+. .......+++.+
T Consensus 118 ~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 196 (269)
T cd06293 118 RIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGDYTREF-GRAAAAQLLARGDPPTAIFAASDEIAIGLLEVL 196 (269)
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecCCCHHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHH
Confidence 9999964321 11223778888887642 2222211111 111122 233221 111 122223344555
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
.+.| -|.-|.|+-..+... -..+ .+..|+ +....++.+++....
T Consensus 197 ~~~g~~vp~di~i~g~d~~~~~~-~~~p-~ltti~~~~~~~g~~a~~~l~~ 245 (269)
T cd06293 197 RERGLSIPGDMSLVGFDDVGPAH-LFAP-PLTTIRQPVRELGRRAVALLLA 245 (269)
T ss_pred HHcCCCCccceEEEeecCchHHh-hcCC-CcceecCCHHHHHHHHHHHHHH
Confidence 5555 367788887766321 1111 123333 344566666665544
No 386
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=36.78 E-value=1.8e+02 Score=26.99 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=68.0
Q ss_pred HHHHHHHcCCcEEEEeCC-Cc------hhhHHHHhhhCCCCe-----eechHHHHHHHHHhcCCCCcCCCCceEEEEech
Q 020005 157 KRVFLEKAGARCIVMPCH-LS------HIWHDEVCKGCSVPF-----LHVSECVAKELKEANMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CN-Ta------H~~~d~l~~~~~iPi-----i~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~ 224 (332)
.++..++.|++.+-+..- ++ +.++.++.+.+.+|+ |.-.+.+ +.+...|.. || +++|.
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~-~~~l~~Ga~--------~v-vigT~ 105 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVVKLLVVVEELSGGRRDDSSL-RAALTGGRA--------RV-NGGTA 105 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHHHHCCCCEEEcCCCCCHHHH-HHHHHcCCC--------EE-EECch
Confidence 445668889986555433 32 235788888888885 3333333 445555654 76 77997
Q ss_pred hhhchhhHHHHHHhcCCeEEecCccch-h---hchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 225 AILTAGFYQEKLQHEGFEVVLPDKATM-E---HTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi~vv~P~~~~q-~---~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
..-...++++.++.+|=++++ +-+.. + ..+ ..+|..+ ....+.+.++++.+.|+..+|+-
T Consensus 106 a~~~p~~~~~~~~~~g~~ivv-slD~k~~g~~~~v------~~~Gw~~-~~~~~~~~~~~~~~~g~~~ii~t 169 (243)
T TIGR01919 106 ALENPWWAAAVIRYGGDIVAV-GLDVLEDGEWHTL------GNRGWSD-GGGDLEVLERLLDSGGCSRVVVT 169 (243)
T ss_pred hhCCHHHHHHHHHHccccEEE-EEEEecCCceEEE------ECCCeec-CCCcHHHHHHHHHhCCCCEEEEE
Confidence 777778888888777644443 11111 0 011 0122222 23345566677777888888763
No 387
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=36.68 E-value=3.8e+02 Score=26.11 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhh--CCC------CeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKG--CSV------PFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~--~~i------Pii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.++.|.+.|=.++++.-|..-.+-+..++. .+. -|+|-.-+++.++++.. +..++|-+||+.+
T Consensus 44 ~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~------~~~k~Vyvig~~g- 116 (306)
T KOG2882|consen 44 PEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRK------PFGKKVYVIGEEG- 116 (306)
T ss_pred HHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhC------cCCCeEEEecchh-
Confidence 45567889999445555555544443333321 122 37788888889998764 2345999999865
Q ss_pred hchhhHHHHHHhcCCeEEe
Q 020005 227 LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~vv~ 245 (332)
..+.|.+.|++...
T Consensus 117 -----i~~eL~~aG~~~~g 130 (306)
T KOG2882|consen 117 -----IREELDEAGFEYFG 130 (306)
T ss_pred -----hhHHHHHcCceeec
Confidence 45678889998875
No 388
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.50 E-value=97 Score=26.74 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=48.2
Q ss_pred CceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChH-HHHHHHHHHHHHHHhCCCCEEEECC
Q 020005 215 PLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVE-GARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~-~a~~~l~~~~~~L~~~gad~VILGC 293 (332)
++||-++|-+.-+-..-.++-++..|-+++.-..++- + --.+|-++ +.+..++.+.+++-..+. .|||||
T Consensus 5 gkKviiiGdRDGiPgpAie~c~~~~gaevvfs~TeCF---V-----ctaagaMDLEnQ~rvk~~aEk~g~enl-vVvlG~ 75 (150)
T PF04723_consen 5 GKKVIIIGDRDGIPGPAIEECVKTAGAEVVFSSTECF---V-----CTAAGAMDLENQQRVKDLAEKYGAENL-VVVLGA 75 (150)
T ss_pred CcEEEEEecCCCCCcHHHHHHHHhcCceEEEEeeeEE---E-----ecccccccHHHHHHHHHHHHhcCCccE-EEEecC
Confidence 4589999998888888888888888999887554421 1 01124442 244556666665543344 689999
Q ss_pred CCc
Q 020005 294 DDM 296 (332)
Q Consensus 294 TEl 296 (332)
.|=
T Consensus 76 aea 78 (150)
T PF04723_consen 76 AEA 78 (150)
T ss_pred CCh
Confidence 874
No 389
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=36.37 E-value=65 Score=31.56 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh--cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA--NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~--g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+. +|+|++=+.. |..+.++.+.+++||||... +.++. +.+. |. -.+.+|+++|
T Consensus 90 l~DTarvls~y-~D~iviR~~~-~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~-----l~g~kia~vG 162 (332)
T PRK04284 90 TKDTARVLGGM-YDGIEYRGFS-QRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKP-----YKDIKFTYVG 162 (332)
T ss_pred HHHHHHHHHHh-CCEEEEecCc-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcCC-----cCCcEEEEec
Confidence 55667788888 9999999875 77789999999999999743 12211 2232 21 1245999999
Q ss_pred ch--hhhchhhHHHHHHhcCCeEEec
Q 020005 223 KN--AILTAGFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 223 T~--~T~~s~lY~~~l~~~Gi~vv~P 246 (332)
-- .+..|-+ ..+...|+++.+.
T Consensus 163 D~~~~v~~Sl~--~~~~~~g~~v~~~ 186 (332)
T PRK04284 163 DGRNNVANALM--QGAAIMGMDFHLV 186 (332)
T ss_pred CCCcchHHHHH--HHHHHcCCEEEEE
Confidence 52 3443333 3566779887663
No 390
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=36.35 E-value=67 Score=29.86 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT 175 (332)
.+.++.|+++|+|.|.+-+-+
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCC
Confidence 456678999999999886554
No 391
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=36.12 E-value=1.7e+02 Score=28.49 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH---HHHHhcCCeEE
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ---EKLQHEGFEVV 244 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~---~~l~~~Gi~vv 244 (332)
.++...+.+++.+.+ |+.|++.+...++++++ +.|++.|+++.
T Consensus 10 ~l~~l~~~l~~~~~~--------~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~ 55 (370)
T cd08551 10 AIEKLGEEIKNLGGR--------KALIVTDPGLVKTGVLDKVIDSLKEAGIEVV 55 (370)
T ss_pred HHHHHHHHHHHcCCC--------eEEEEeCcchhhCccHHHHHHHHHHcCCeEE
Confidence 345555566655443 88888877666656554 44666677665
No 392
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=35.81 E-value=1.5e+02 Score=27.60 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred EEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 83 VGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 83 IGIiG--GmGp~AT~~~y~kI~~~t~~d--~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
|-+.| |=++.=|.+=.+++++.+.+. +..|++.---..-... ..+.+
T Consensus 35 i~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~-----------------------------~i~~a 85 (281)
T cd00408 35 LVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE-----------------------------AIELA 85 (281)
T ss_pred EEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH-----------------------------HHHHH
Q ss_pred HHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 159 VFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
+..++.|+|.+++.--.... +|.++.+.+++|++
T Consensus 86 ~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~ 127 (281)
T cd00408 86 RHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVI 127 (281)
T ss_pred HHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE
No 393
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=35.68 E-value=3.3e+02 Score=24.99 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch-------hhHHHHhhhCCCCe-----eechHHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH-------IWHDEVCKGCSVPF-----LHVSECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH-------~~~d~l~~~~~iPi-----i~Ive~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
.+.++.+++.|+|.+.+.--.+- ..+.++.+.+.+|+ |.-.|.+ +.+...|.. |+ ++|
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv-~~~l~~Ga~--------kv-viG 104 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDESL-EAALATGCA--------RV-NIG 104 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHH-HHHHHCCCC--------EE-EEC
Q ss_pred chhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 223 KNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
|..--...+..+..+.++=. +..+-+... ..++.....+......+.++.+.+.|++.+++
T Consensus 105 s~~l~~p~l~~~i~~~~~~~-i~vsld~~~-------~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv 165 (241)
T PRK14024 105 TAALENPEWCARVIAEHGDR-VAVGLDVRG-------HTLAARGWTRDGGDLWEVLERLDSAGCSRYVV 165 (241)
T ss_pred chHhCCHHHHHHHHHHhhhh-EEEEEEEec-------cEeccCCeeecCccHHHHHHHHHhcCCCEEEE
No 394
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=35.60 E-value=1.2e+02 Score=26.26 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHcCCcE-EEEeCCCchhhHHHHhhhCCCCeeechHHHHHH
Q 020005 158 RVFLEKAGARC-IVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKE 201 (332)
Q Consensus 158 ~~~Le~~Gad~-IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~ 201 (332)
++.|++.|++. ..+|-+..-.+++.+.+.-++.++..-.+....
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~ 51 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAA 51 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHH
Confidence 46899999985 667777777788999765578888877665443
No 395
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=35.53 E-value=41 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.5
Q ss_pred HHHHHHHcCCc-EEEEeCCCchhhHHHHhhhCCCCeeechHHHHH
Q 020005 157 KRVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAK 200 (332)
Q Consensus 157 ~~~~Le~~Gad-~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~ 200 (332)
.++.|++.|++ +..+|+.....+++.+++.-++.++....+...
T Consensus 7 l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A 51 (172)
T PF02776_consen 7 LAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGA 51 (172)
T ss_dssp HHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHH
T ss_pred HHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchh
Confidence 35789999997 578999998889999998877888877655443
No 396
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=35.45 E-value=4.2e+02 Score=25.59 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHH-HH-hcCCCCcCCCCceEEEEechhhh-----
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL-KE-ANMKPLEAGSPLRIGVLAKNAIL----- 227 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l-~~-~g~k~~~~~~~~rVGlLaT~~T~----- 227 (332)
.+.+..|++.|+|.+++--.| +++.+.. .+.-++.+ .+ .+. +.-|.|.+.+.
T Consensus 73 eeR~~~l~~~gVD~~~~~~F~-----~~~~~ls-------~e~Fi~~~l~~~l~~---------~~iVvG~Df~FG~~~~ 131 (305)
T PRK05627 73 RDKAELLAELGVDYVLVLPFD-----EEFAKLS-------AEEFIEDLLVKGLNA---------KHVVVGFDFRFGKKRA 131 (305)
T ss_pred HHHHHHHHHcCCCEEEEecCC-----HHHhcCC-------HHHHHHHHHHhccCC---------CEEEECCCCCCCCCCC
Confidence 455678999999987774433 3333321 12222221 11 222 57788887764
Q ss_pred -chhhHHHHHHhcCCeEEecCccc-hhhchH--HHHHHHhcCChHHHHHHH
Q 020005 228 -TAGFYQEKLQHEGFEVVLPDKAT-MEHTLI--PALDALNRKDVEGARNLL 274 (332)
Q Consensus 228 -~s~lY~~~l~~~Gi~vv~P~~~~-q~~~l~--~~i~~ik~g~~~~a~~~l 274 (332)
.....++..+++|++++..+... ....+. .+-+.|+.|+++.|..+|
T Consensus 132 G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~G~i~~A~~lL 182 (305)
T PRK05627 132 GDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAEGDLELANKLL 182 (305)
T ss_pred CCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHcCCHHHHHhhh
Confidence 23456666677799876533221 111111 123678889997765544
No 397
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.35 E-value=95 Score=29.11 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
+.+.++.|+++|+|+|.+..-+
T Consensus 178 ~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 178 IVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred HHHHHHHHHHcCCCEEEEEccc
Confidence 3455677899999999986443
No 398
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=35.14 E-value=3.7e+02 Score=24.93 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCcEE--------EEeCCCchhh-HHHHhhhCCCCe-------------------------eec-----
Q 020005 154 LRRKRVFLEKAGARCI--------VMPCHLSHIW-HDEVCKGCSVPF-------------------------LHV----- 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~I--------vI~CNTaH~~-~d~l~~~~~iPi-------------------------i~I----- 194 (332)
+.+.++.++++|+|.| .+|--|.-++ ++++++.+..|+ +|.
T Consensus 18 l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~ 97 (220)
T COG0036 18 LGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEH 97 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcC
Confidence 3445567888999876 3566666655 678887665553 111
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCe---EEecCccchh--hchHHHHHHHhc-----
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFE---VVLPDKATME--HTLIPALDALNR----- 264 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~---vv~P~~~~q~--~~l~~~i~~ik~----- 264 (332)
+..+++.+++.|. +.||.=-++|-- ..|+..|....+- -|.|.-..|. ..+.+-+..+++
T Consensus 98 ~~r~i~~Ik~~G~---------kaGv~lnP~Tp~-~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~ 167 (220)
T COG0036 98 IHRTIQLIKELGV---------KAGLVLNPATPL-EALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDER 167 (220)
T ss_pred HHHHHHHHHHcCC---------eEEEEECCCCCH-HHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhccc
Confidence 2234555666554 688877777743 3466777765432 2347666664 111111222211
Q ss_pred CCh--HHHHHHHHHHHHHHHhCCCCEEEECC
Q 020005 265 KDV--EGARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 265 g~~--~~a~~~l~~~~~~L~~~gad~VILGC 293 (332)
|+. +-.-..-.+-+..+.+.|||.+|.|.
T Consensus 168 ~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 168 LDILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred CCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 010 00000112334566778999999997
No 399
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.09 E-value=1.4e+02 Score=28.11 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEE-ecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 83 VGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLL-CSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 83 IGIiG--GmGp~AT~~~y~kI~~~t~~d--~~~~~vi-~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
|-+.| |=++.=|.+=.+++++.+.+. +..|++. .+.....+ ..+.
T Consensus 39 i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~------------------------------ai~~ 88 (288)
T cd00954 39 LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKE------------------------------SQEL 88 (288)
T ss_pred EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHH------------------------------HHHH
Q ss_pred HHHHHHcCCcEEEEeCCCchh--------hHHHHhhhC-CCCee
Q 020005 158 RVFLEKAGARCIVMPCHLSHI--------WHDEVCKGC-SVPFL 192 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~-~iPii 192 (332)
++..++.|||++++..--... +|.++.+.+ ++||+
T Consensus 89 a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 89 AKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEE
No 400
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.01 E-value=2e+02 Score=26.71 Aligned_cols=84 Identities=18% Similarity=0.043 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCc----------------hhhHHHHhhhCCCCeeechHH----HHHHHHH
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLS----------------HIWHDEVCKGCSVPFLHVSEC----VAKELKE 204 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTa----------------H~~~d~l~~~~~iPii~Ive~----t~~~l~~ 204 (332)
.+++.+.+ .++.+.+.|||.|=|-+-+. .+.++.+++.+++|+ ++ |. +++++.+
T Consensus 21 ~~~~~~~~----~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi-SI-DT~~~~v~~aaL~ 94 (258)
T cd00423 21 LSLDKALE----HARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI-SV-DTFNAEVAEAALK 94 (258)
T ss_pred CCHHHHHH----HHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE-EE-eCCcHHHHHHHHH
Confidence 45666544 34567889999999988654 234677777778884 44 43 3333333
Q ss_pred hcCCCCcCCCCceEEEEechhh-hchhhHHHHHHhcCCeEEe
Q 020005 205 ANMKPLEAGSPLRIGVLAKNAI-LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 205 ~g~k~~~~~~~~rVGlLaT~~T-~~s~lY~~~l~~~Gi~vv~ 245 (332)
.| +--|-...+- .... .-+.+.++|..+++
T Consensus 95 ~g----------~~iINdis~~~~~~~-~~~l~~~~~~~vV~ 125 (258)
T cd00423 95 AG----------ADIINDVSGGRGDPE-MAPLAAEYGAPVVL 125 (258)
T ss_pred hC----------CCEEEeCCCCCCChH-HHHHHHHcCCCEEE
Confidence 32 1224443333 2223 33466778887776
No 401
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=34.96 E-value=2.1e+02 Score=28.25 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEechhhhc-hhhHH---HHHHhcCCeEEe
Q 020005 217 RIGVLAKNAILT-AGFYQ---EKLQHEGFEVVL 245 (332)
Q Consensus 217 rVGlLaT~~T~~-s~lY~---~~l~~~Gi~vv~ 245 (332)
|+.|++++.+.+ +++++ +.|++.|+++..
T Consensus 30 r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~ 62 (382)
T cd08187 30 KVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVE 62 (382)
T ss_pred EEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEE
Confidence 899998876653 55554 557777887754
No 402
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=34.93 E-value=3.2e+02 Score=26.02 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh---HHHHhhhCCC-----CeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSV-----PFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~~i-----Pii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.+++|+++|..++.+.-|+.-.. ..+|+....+ -|+.-.++++..+++... .+||-++|+.+
T Consensus 30 ~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~-------~~kv~viG~~~- 101 (269)
T COG0647 30 AEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKP-------GKKVYVIGEEG- 101 (269)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCC-------CCEEEEECCcc-
Confidence 4566789999999999998874432 3555552333 277778899999888632 24899999754
Q ss_pred hchhhHHHHHHhcCCeEEe
Q 020005 227 LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~vv~ 245 (332)
..+.++..|++.+.
T Consensus 102 -----l~~~l~~~G~~~~~ 115 (269)
T COG0647 102 -----LKEELEGAGFELVD 115 (269)
T ss_pred -----hHHHHHhCCcEEec
Confidence 45678888988876
No 403
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=34.91 E-value=2.8e+02 Score=27.12 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=46.2
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech--------------------------HHHHHHHHHhcCCCCcCC
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMKPLEAG 213 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv--------------------------e~t~~~l~~~g~k~~~~~ 213 (332)
+|...|+.+|+=|.++.... ..+.+..++|+|+.. .+.+..++..+.
T Consensus 64 ~li~~~v~aiiGp~~S~~~~-a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w------ 136 (404)
T cd06370 64 DWWKRGVVAFIGPECTCTTE-ARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNW------ 136 (404)
T ss_pred HHHhcCceEEECCCchhHHH-HHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCC------
Confidence 34455899888877764443 456677788877531 112222333344
Q ss_pred CCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 214 SPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
+||+++.-+... -...+++.+++.|++++
T Consensus 137 --~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv 168 (404)
T cd06370 137 --NKFSVVYENDSKYSSVFETLKEEAELRNITIS 168 (404)
T ss_pred --cEEEEEEecCcccHHHHHHHHHHHHHcCCEEE
Confidence 399999764432 23446677888899986
No 404
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.77 E-value=2.9e+02 Score=25.37 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCcEEEEeC--C--C--ch--hhHHHHhhhCCCCeeech
Q 020005 155 RRKRVFLEKAGARCIVMPC--H--L--SH--IWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~C--N--T--aH--~~~d~l~~~~~iPii~Iv 195 (332)
.+.++.+++.|++.+++-. + | -+ ..+.++.+..++|++--.
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~G 204 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASG 204 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEEC
Confidence 3445678899999887732 1 1 11 235777777788887554
No 405
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.77 E-value=1.3e+02 Score=26.14 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=30.4
Q ss_pred CCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc-CCeEEe
Q 020005 189 VPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 189 iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
++=.+++..+.+.+.+.+. ||.++|++...-....++.-+.+ |+.++-
T Consensus 29 ~~g~dl~~~ll~~~~~~~~---------~v~llG~~~~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 29 VTGSDLMPALLELAAQKGL---------RVFLLGAKPEVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred cCcHHHHHHHHHHHHHcCC---------eEEEECCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3334556666666655432 89999997776666655544444 787764
No 406
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=34.67 E-value=4e+02 Score=25.13 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 216 LRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+||+++..+...- ...+++.+++.|++++.
T Consensus 137 ~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~ 169 (333)
T cd06328 137 KKIATLAQDYAFGRDGVAAFKAALEKLGAAIVT 169 (333)
T ss_pred CeEEEEecCccccHHHHHHHHHHHHhCCCEEee
Confidence 4899998765432 23467778888998864
No 407
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=34.58 E-value=85 Score=26.62 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhH----HHHhhhCCCCeeechHH
Q 020005 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWH----DEVCKGCSVPFLHVSEC 197 (332)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~----d~l~~~~~iPii~Ive~ 197 (332)
+.+..-+.+.++.|.+..+.+.+++-|-..+-| +.|.+...||+|.+.++
T Consensus 33 dGlarGi~Ea~KaldkrqA~lcvLaencdep~yvKLVeALcaeh~iplikV~d~ 86 (134)
T KOG3406|consen 33 DGLARGIHEAAKALDKRQAHLCVLAENCDEPMYVKLVEALCAEHQIPLIKVGDA 86 (134)
T ss_pred chHHhHHHHHHHHHhhCceeEEEEeccCCchHHHHHHHHHHhhcCCCeEEeccc
Confidence 345556788899999999999999988767654 66666778999998764
No 408
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=34.33 E-value=1.1e+02 Score=29.47 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=49.7
Q ss_pred cCeEEEE-eC-CChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIV-GG-ASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIi-GG-mGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
.|+.|.. .| -.-....++.+||.....+....+++|.-..+ -+- .....++.+. -
T Consensus 115 pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTD-----------a~~--------~~~g~deAI~----R 171 (290)
T TIGR02321 115 PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVE-----------ALI--------AGLGQQEAVR----R 171 (290)
T ss_pred CcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEec-----------ccc--------ccCCHHHHHH----H
Confidence 4555555 23 12245567888887766554346666644111 100 0011123322 3
Q ss_pred HHHHHHcCCcEEEEeC-CCchhhHHHHhhhCC--CCee
Q 020005 158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCS--VPFL 192 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~C-NTaH~~~d~l~~~~~--iPii 192 (332)
++...++|||+|.+++ .+.-.-+.++.+.++ +|++
T Consensus 172 a~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~ 209 (290)
T TIGR02321 172 GQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLV 209 (290)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeE
Confidence 4567789999999997 454455666777665 4664
No 409
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=34.32 E-value=2.1e+02 Score=29.07 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcC------CCCcCCCCceEEEEechhhhchhhHHHHHHhc--CCeEEecCccchhhchHHHHHHHhcCCh
Q 020005 196 ECVAKELKEANM------KPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATMEHTLIPALDALNRKDV 267 (332)
Q Consensus 196 e~t~~~l~~~g~------k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q~~~l~~~i~~ik~g~~ 267 (332)
+...+.+.+.|+ +|+|.... ||||+..+..-.-+=+.+.+.++ .+++++ +...-.|+-
T Consensus 105 ~~lk~~L~~eGlfd~~~k~~lP~~p~-~i~vits~~~aa~~D~~~~~~~r~p~~~~~~-------------~~~~vQG~~ 170 (432)
T TIGR00237 105 EQLKEKLAAEGLFDQEYKKPLPHFPK-RVGVITSQTGAALADILHILKRRDPSLKVVI-------------YPTLVQGEG 170 (432)
T ss_pred HHHHHHHHHCCCCCchhcCCCCCCCC-EEEEEeCCccHHHHHHHHHHHhhCCCceEEE-------------ecccccCcc
Q ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEC
Q 020005 268 EGARNLLRIALQVLLVRA-VNTVILA 292 (332)
Q Consensus 268 ~~a~~~l~~~~~~L~~~g-ad~VILG 292 (332)
+...+.++++.+...+ +|+||++
T Consensus 171 --a~~~i~~al~~~~~~~~~dviii~ 194 (432)
T TIGR00237 171 --AVQSIVESIELANTKNECDVLIVG 194 (432)
T ss_pred --HHHHHHHHHHHhhcCCCCCEEEEe
No 410
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=34.24 E-value=3e+02 Score=24.24 Aligned_cols=61 Identities=10% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHHHhcCCeEEecCc-cchhhchHHHHHHHhcCChHH-----HHHHHHHHHHHHHhCCCCEEEECC
Q 020005 232 YQEKLQHEGFEVVLPDK-ATMEHTLIPALDALNRKDVEG-----ARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 232 Y~~~l~~~Gi~vv~P~~-~~q~~~l~~~i~~ik~g~~~~-----a~~~l~~~~~~L~~~gad~VILGC 293 (332)
+++.+...|++++.... .+.. ..+++++.+..+.++. ...-|..++++++++|..+++.|.
T Consensus 71 l~~~l~~~Gf~pv~~kG~~Dv~-laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 71 LIEAVVNQGFEPIIVAGDVDVR-MAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred HHHHHHHCCceEEEecCcccHH-HHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 57889999999875322 2221 2334444443444432 235578888899999999999995
No 411
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.03 E-value=2.8e+02 Score=27.53 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=31.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcc
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLL 121 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~i 121 (332)
+++.|+|++..-++---|=++.+++....+...|++..+-|.+
T Consensus 87 ~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t~gf 129 (396)
T cd01979 87 NPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASASGL 129 (396)
T ss_pred CCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeCCCc
Confidence 4778999987777777777777777665444577777776664
No 412
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.97 E-value=2e+02 Score=25.98 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~I 194 (332)
.+.++.+++.|+|.+++-.-+.. .++.++++.+++|++-.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 203 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIAL 203 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEE
Confidence 35567899999999998874432 23566666666776654
No 413
>PRK10444 UMP phosphatase; Provisional
Probab=33.88 E-value=2e+02 Score=26.62 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCC--C---eeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSV--P---FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~i--P---ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
..+.+++|.+.|..++++.-|+... +.+.++. .++ + |+.-..++++++++.+. ++|-++|+.+
T Consensus 22 a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~-~G~~~~~~~i~ts~~~~~~~L~~~~~--------~~v~~~g~~~ 92 (248)
T PRK10444 22 AAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT-AGVDVPDSVFYTSAMATADFLRRQEG--------KKAYVIGEGA 92 (248)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCCHhhEecHHHHHHHHHHhCCC--------CEEEEEcCHH
Confidence 3456678999999988887776533 3455543 233 2 45556777787877422 3798999843
Q ss_pred hhchhhHHHHHHhcCCeEE
Q 020005 226 ILTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv 244 (332)
. .+.|++.|+++.
T Consensus 93 l------~~~l~~~g~~~~ 105 (248)
T PRK10444 93 L------IHELYKAGFTIT 105 (248)
T ss_pred H------HHHHHHCcCEec
Confidence 3 344566787753
No 414
>PRK06849 hypothetical protein; Provisional
Probab=33.79 E-value=1.3e+02 Score=29.60 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=44.0
Q ss_pred ceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhh-chHHHHHHHhcC--ChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 216 LRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEH-TLIPALDALNRK--DVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~-~l~~~i~~ik~g--~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
++|.|+|......-.+. +.|.+.|++++.-+...-.. .....++....- ........+..+.+...++++|.||.+
T Consensus 5 ~~VLI~G~~~~~~l~ia-r~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~ 83 (389)
T PRK06849 5 KTVLITGARAPAALELA-RLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPT 83 (389)
T ss_pred CEEEEeCCCcHHHHHHH-HHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 48999998876555544 56788899998754431110 000011111100 000112233444444455789999999
Q ss_pred CCCcc
Q 020005 293 SDDMQ 297 (332)
Q Consensus 293 CTElp 297 (332)
|.+..
T Consensus 84 ~e~~~ 88 (389)
T PRK06849 84 CEEVF 88 (389)
T ss_pred ChHHH
Confidence 98763
No 415
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.77 E-value=1.3e+02 Score=23.97 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++.+++.|+..|+|..|...+.
T Consensus 62 ~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 62 TLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCChH
Confidence 34566778899999999999865444
No 416
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.66 E-value=2e+02 Score=27.84 Aligned_cols=54 Identities=20% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCcEEEE---eCCCch----------h--hHHHHhhhCCCCee-----e--chHHHHHHHHHhcCC
Q 020005 155 RRKRVFLEKAGARCIVM---PCHLSH----------I--WHDEVCKGCSVPFL-----H--VSECVAKELKEANMK 208 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI---~CNTaH----------~--~~d~l~~~~~iPii-----~--Ive~t~~~l~~~g~k 208 (332)
.+.++.++++|+|+|-+ +|+... . .+.++++.+++||+ + -+...++.+.+.|.+
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~d 192 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGAD 192 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCC
Confidence 34566788899999988 444421 1 14667777788866 1 124556666666654
No 417
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.58 E-value=2e+02 Score=29.50 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCCcCCCCceEEEEechhhhchhhHHHHHHhc--CCeEEe-cC
Q 020005 208 KPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE--GFEVVL-PD 247 (332)
Q Consensus 208 k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~-P~ 247 (332)
+|+|..+ ++|||+..+..-.-+-.-..+.++ .+++++ |.
T Consensus 129 kpLP~~p-~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt 170 (440)
T COG1570 129 KPLPFFP-KKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPT 170 (440)
T ss_pred CCCCCCC-CeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 4666544 499999985543222233334443 577654 53
No 418
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=33.54 E-value=2.3e+02 Score=27.74 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc-hhhH---HHHHHhcCCeEEe
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT-AGFY---QEKLQHEGFEVVL 245 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~-s~lY---~~~l~~~Gi~vv~ 245 (332)
..+.+.+.+++.| + |+.|++.+...+ .+++ .+.|++.|+++..
T Consensus 13 ~l~~l~~~~~~~g-~--------r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~ 59 (357)
T cd08181 13 CVEKHGEELAALG-K--------RALIVTGKSSAKKNGSLDDVTKALEELGIEYEI 59 (357)
T ss_pred HHHHHHHHHHHcC-C--------EEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEE
Confidence 3444445555544 3 888888777633 5544 4556677877653
No 419
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=33.51 E-value=4.4e+02 Score=25.93 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++=++.+.+.+-.+.++|||.|+ |+-.+.-- +.+.-+.+-+.|+. .|+||+=..
T Consensus 139 dND~Tl~~L~~~Al~~A~AGaDiVA-PSdMMDGr---------------V~aIR~aLd~~g~~--------~v~ImSYsa 194 (323)
T PRK09283 139 DNDETLELLAKQALSQAEAGADIVA-PSDMMDGR---------------VGAIREALDEAGFT--------DVPIMSYSA 194 (323)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEE-cccccccH---------------HHHHHHHHHHCCCC--------CCceeecHH
Confidence 3456667777888888999999655 55544433 33333445566664 699999888
Q ss_pred hhchhhHHHHH
Q 020005 226 ILTAGFYQEKL 236 (332)
Q Consensus 226 T~~s~lY~~~l 236 (332)
-..|.||.-.-
T Consensus 195 KyaS~fYGPFR 205 (323)
T PRK09283 195 KYASAFYGPFR 205 (323)
T ss_pred HHHHhhhHHHH
Confidence 88888887543
No 420
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=33.39 E-value=1.9e+02 Score=28.24 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHH---HHHhcCCeEE
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE---KLQHEGFEVV 244 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv 244 (332)
.++.+.+.+++.|.+ |+.|+..+.+.+.+++++ .|++.|+++.
T Consensus 11 ~~~~l~~~l~~~g~~--------~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~ 56 (370)
T cd08192 11 AIKELPAECAELGIK--------RPLIVTDPGLAALGLVARVLALLEDAGLAAA 56 (370)
T ss_pred HHHHHHHHHHHcCCC--------eEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 345555566665543 888887666655555554 4566677764
No 421
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=33.23 E-value=60 Score=26.79 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHH-------hhhCCCCeeechHHHHHHHHHh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEV-------CKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l-------~~~~~iPii~Ive~t~~~l~~~ 205 (332)
.+.++..+++||.+++|.-|..+.....+ .....||.+.|.....+.+++.
T Consensus 48 ~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~ 105 (118)
T cd02127 48 LTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKT 105 (118)
T ss_pred HHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHH
Confidence 34566789999999999887655211111 2335689999988887777664
No 422
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.22 E-value=4.5e+02 Score=25.35 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLS 176 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTa 176 (332)
+.+.++.|+++|+|.|++ .||.
T Consensus 179 ~~~~a~~l~~~G~dgI~~-~n~~ 200 (334)
T PRK07565 179 LANMAKRLDAAGADGLVL-FNRF 200 (334)
T ss_pred HHHHHHHHHHcCCCeEEE-ECCc
Confidence 345567899999999876 4663
No 423
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=33.21 E-value=4.1e+02 Score=24.87 Aligned_cols=37 Identities=3% Similarity=-0.116 Sum_probs=20.6
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 158 RVFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 158 ~~~Le-~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
+++|. +.|+++|+=+..+.... ...+-+..++|+|+.
T Consensus 57 ~~~lv~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~ 95 (333)
T cd06359 57 AERLIKRDKVDFVTGVVFSNVLLAVVPPVLESGTFYIST 95 (333)
T ss_pred HHHHHhhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEec
Confidence 34454 45899777553332211 233445568898875
No 424
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=33.05 E-value=4.5e+02 Score=27.36 Aligned_cols=82 Identities=11% Similarity=0.055 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchh-------hHHHHhhhCCCCeeechHH----HHHHHHHhcCCCCcCCCCceEEE
Q 020005 152 ENLRRKRVFLEKAGARCIVMPCHLSHI-------WHDEVCKGCSVPFLHVSEC----VAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~CNTaH~-------~~d~l~~~~~iPii~Ive~----t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
+.+.+.++.+.+.|||.|-|-|-...+ .++.+++.+++|+ ++ |. +++++.+.|.. + |
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pI-SI-DT~~~~v~eaAL~aGAd---------i-I 232 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPV-IA-DTPTLDELYEALKAGAS---------G-V 232 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcE-EE-eCCCHHHHHHHHHcCCC---------E-E
Confidence 335566777889999999999986543 3566666667774 54 33 33444444421 2 3
Q ss_pred Eechh-hhchhhHHHHHHhcCCeEEe-cC
Q 020005 221 LAKNA-ILTAGFYQEKLQHEGFEVVL-PD 247 (332)
Q Consensus 221 LaT~~-T~~s~lY~~~l~~~Gi~vv~-P~ 247 (332)
.-..+ ++. . .-+.++++|..+|+ |.
T Consensus 233 NsVs~~~~d-~-~~~l~a~~g~~vVlm~~ 259 (499)
T TIGR00284 233 IMPDVENAV-E-LASEKKLPEDAFVVVPG 259 (499)
T ss_pred EECCccchh-H-HHHHHHHcCCeEEEEcC
Confidence 32222 222 2 22346677888775 64
No 425
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.90 E-value=1.1e+02 Score=30.80 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=45.9
Q ss_pred cCCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|+||+.--- .|+.+.+.++ .++|+++=+|...+.. .. +.|||-||.| |-.+.+....|...|
T Consensus 67 ~~~d~vV~SpgI~~~~p~~~~a~~-~gi~i~~~~el~~~~~---~~--------~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 67 LEADLVVTNPGIALATPEIQQVLA-AGIPVVGDIELFAWAV---DK--------PVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred ccCCEEEECCCCCCCCHHHHHHHH-CCCcEEEHHHHHHhhc---CC--------CEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 358877765532 3666666554 4899999887764432 11 2799999988 445566777888777
Q ss_pred CeEE
Q 020005 241 FEVV 244 (332)
Q Consensus 241 i~vv 244 (332)
..+.
T Consensus 135 ~~~~ 138 (438)
T PRK04663 135 VKVA 138 (438)
T ss_pred CCEE
Confidence 6554
No 426
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=32.88 E-value=3.6e+02 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=16.8
Q ss_pred eEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 217 RIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 217 rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
+|+++..+... ....+.+.+++.|++++
T Consensus 134 ~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~ 164 (382)
T cd06371 134 HVAIVSSPQDIWVETAQKLASALRAHGLPVG 164 (382)
T ss_pred EEEEEEecccchHHHHHHHHHHHHHCCCcEE
Confidence 88888654432 12335566777787665
No 427
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.82 E-value=4e+02 Score=24.55 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
-++.+.++|+|.+++|=- |+ + + .+...+.+++.|. +.+++-++.|-... .+..+
T Consensus 96 fi~~~~~aG~~giiipDl--~~--e-----------e-~~~~~~~~~~~g~---------~~i~~i~P~T~~~~-i~~i~ 149 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDL--PP--E-----------E-AEEFREAAKEYGL---------DLIFLVAPTTPDER-IKKIA 149 (242)
T ss_pred HHHHHHHCCCcEEEECCC--CH--H-----------H-HHHHHHHHHHcCC---------cEEEEeCCCCCHHH-HHHHH
Confidence 345688999999999721 21 1 1 3455667777766 47777777774433 34444
Q ss_pred H-hcCCeE
Q 020005 237 Q-HEGFEV 243 (332)
Q Consensus 237 ~-~~Gi~v 243 (332)
. ..|+-.
T Consensus 150 ~~~~~~vy 157 (242)
T cd04724 150 ELASGFIY 157 (242)
T ss_pred hhCCCCEE
Confidence 4 345433
No 428
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.73 E-value=1.4e+02 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++.+++.|+..|+|.++...+.
T Consensus 63 ~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 63 LLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 34556778899999999999986665
No 429
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.72 E-value=3.4e+02 Score=25.03 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-------hhhHHHHhhhCCCCee-----echHHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLS-------HIWHDEVCKGCSVPFL-----HVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa-------H~~~d~l~~~~~iPii-----~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+.+.|+|-+.+.--.+ +.++.++.+.+-.|+- .-.+ .++.+.+.|.. || +++|
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e-~~~~~l~~Ga~--------kv-vigt 103 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDIE-KAKRLLSLDVN--------AL-VFST 103 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCHH-HHHHHHHCCCC--------EE-EECc
Confidence 345677889998766654333 2345666653323531 2223 33555566665 76 7899
Q ss_pred hhhhchhhHHHHHHhcCCeEEecCccc-hhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 224 NAILTAGFYQEKLQHEGFEVVLPDKAT-MEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~P~~~~-q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
...-...++++..+++|-+-++.+-+. .+..+. .+|..+ ....+.+.++++.+.|+..+|+
T Consensus 104 ~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~------~~gw~~-~~~~~~e~~~~l~~~g~~~ii~ 165 (232)
T PRK13586 104 IVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVL------IRGWKE-KSMEVIDGIKKVNELELLGIIF 165 (232)
T ss_pred hhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEE------ccCCee-CCCCHHHHHHHHHhcCCCEEEE
Confidence 777777888888888863322222221 111111 112211 1223456667777778877765
No 430
>PRK07064 hypothetical protein; Provisional
Probab=32.69 E-value=1.2e+02 Score=31.24 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=49.2
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEE-EechhhhchhhHHHH
Q 020005 158 RVFLEKAGARCI-VMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGV-LAKNAILTAGFYQEK 235 (332)
Q Consensus 158 ~~~Le~~Gad~I-vI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGl-LaT~~T~~s~lY~~~ 235 (332)
++.|++.|++.+ .+|+.+.-++++.+.+.-++.++....+........|+- .-++|+|+ +.|.|.=........
T Consensus 10 ~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gya----r~tg~~~v~~~t~GpG~~N~~~~i 85 (544)
T PRK07064 10 AAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHA----RVSGGLGVALTSTGTGAGNAAGAL 85 (544)
T ss_pred HHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHH----HhcCCCeEEEeCCCCcHHHHHHHH
Confidence 468999999865 588887778899997655688888877655443333321 11235665 455453222333333
Q ss_pred HHhc--CCeEE
Q 020005 236 LQHE--GFEVV 244 (332)
Q Consensus 236 l~~~--Gi~vv 244 (332)
.+++ ++.++
T Consensus 86 ~~A~~~~~Pvl 96 (544)
T PRK07064 86 VEALTAGTPLL 96 (544)
T ss_pred HHHHhcCCCEE
Confidence 3332 45544
No 431
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.61 E-value=3.3e+02 Score=23.61 Aligned_cols=79 Identities=6% Similarity=0.054 Sum_probs=49.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++|.++||. +.......+++.+..+. +.++-..++-. + ..+ ..+.++
T Consensus 48 ~~~ifllG~~-~~~~~~~~~~l~~~yP~---l~ivg~~~g~f---------~------------~~~-------~~~i~~ 95 (172)
T PF03808_consen 48 GKRIFLLGGS-EEVLEKAAANLRRRYPG---LRIVGYHHGYF---------D------------EEE-------EEAIIN 95 (172)
T ss_pred CCeEEEEeCC-HHHHHHHHHHHHHHCCC---eEEEEecCCCC---------C------------hhh-------HHHHHH
Confidence 4689999765 77777777777766642 22222121111 0 011 123445
Q ss_pred HHHHcCCcEEEEeCCCc--hhhHHHHhhhCCCC
Q 020005 160 FLEKAGARCIVMPCHLS--HIWHDEVCKGCSVP 190 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTa--H~~~d~l~~~~~iP 190 (332)
.++++|+|+++++--+. ..|..+.+...+.+
T Consensus 96 ~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~ 128 (172)
T PF03808_consen 96 RINASGPDIVFVGLGAPKQERWIARHRQRLPAG 128 (172)
T ss_pred HHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 67899999999988876 45777777777766
No 432
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=32.58 E-value=3.8e+02 Score=25.50 Aligned_cols=116 Identities=6% Similarity=-0.015 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCcEEEE-------eCCCchhhHHHHhhhCCCCe-----eechHHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVM-------PCHLSHIWHDEVCKGCSVPF-----LHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI-------~CNTaH~~~d~l~~~~~iPi-----i~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+++.|++.+=+ +.| ...+.+|.+ +++|| |. . +.++.+.+.|.. || +++|
T Consensus 47 ~~A~~~~~~Ga~~lHvVDLdgg~~~n--~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~~Ga~--------rV-iigT 112 (262)
T PLN02446 47 EFAEMYKRDGLTGGHVIMLGADDASL--AAALEALRA-YPGGLQVGGGVN-S-ENAMSYLDAGAS--------HV-IVTS 112 (262)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCccc--HHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHHcCCC--------EE-EEch
Confidence 3456788899975433 333 334667777 66665 34 2 666777777775 66 4588
Q ss_pred hhhhc----hhhHHHHHHhcCCeEEecCccch--hh--chHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 224 NAILT----AGFYQEKLQHEGFEVVLPDKATM--EH--TLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 224 ~~T~~----s~lY~~~l~~~Gi~vv~P~~~~q--~~--~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
.+.-. ..+.++.++++|-+-++.+-+.. .. .+ .+ .|..+...-.+.+.+.++.+.|++.+|+
T Consensus 113 ~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~V-----a~-~GW~~~t~~~~~e~~~~~~~~g~~eii~ 182 (262)
T PLN02446 113 YVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYV-----VT-DRWQKFSDLAVDEETLEFLAAYCDEFLV 182 (262)
T ss_pred HHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEE-----EE-CCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 76655 88999999998744333322222 11 11 01 2222222223444445566677877775
No 433
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=32.54 E-value=1e+02 Score=23.87 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 157 KRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.++..++.++|+|+|.+...+. +.+.+-..+++|++
T Consensus 94 i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVl 137 (140)
T PF00582_consen 94 IIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVL 137 (140)
T ss_dssp HHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEE
T ss_pred hhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEE
Confidence 3456678899999999998333 24555566666654
No 434
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.49 E-value=3e+02 Score=25.54 Aligned_cols=119 Identities=10% Similarity=-0.004 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCcEEEEeCCC-ch-------hhHHHHhhhCCCCee---ech-HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHL-SH-------IWHDEVCKGCSVPFL---HVS-ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNT-aH-------~~~d~l~~~~~iPii---~Iv-e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.+++.|+|-+.+.=-. +- .++++|.+.+ +|+- +|- .+.++.+.+.|.. || +++|
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~--------rv-vigT 103 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYR--------RQ-IVSS 103 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCC--------EE-EECc
Confidence 34567788999976665433 21 2467777766 5631 111 2344455566664 76 7899
Q ss_pred hhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 224 NAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
..--...+.++. +++|-++++ +-+.....+. ..|..+...-...+.++.+.+.|+..+|+-
T Consensus 104 ~a~~~p~~l~~~-~~~~~~ivv-slD~k~g~v~------~~gw~~~~~~~~~e~~~~~~~~g~~~ii~t 164 (241)
T PRK14114 104 KVLEDPSFLKFL-KEIDVEPVF-SLDTRGGKVA------FKGWLAEEEIDPVSLLKRLKEYGLEEIVHT 164 (241)
T ss_pred hhhCCHHHHHHH-HHhCCCEEE-EEEccCCEEe------eCCCeecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 665566677766 666544433 1111111111 122222222234556667777888888864
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.32 E-value=1.6e+02 Score=30.23 Aligned_cols=71 Identities=13% Similarity=0.263 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-HHHHh---hhCCCCeeech---------HHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW-HDEVC---KGCSVPFLHVS---------ECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~---~~~~iPii~Iv---------e~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
..+++|.+.|-...+++|-|.-+. +++|+ +++++||++.. ...+++++..++ -|-++=
T Consensus 119 KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~---------DvvIvD 189 (451)
T COG0541 119 KLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGY---------DVVIVD 189 (451)
T ss_pred HHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCC---------CEEEEe
Confidence 456788999999999999998776 55554 67899998863 223333444333 488888
Q ss_pred chhh--hchhhHHHH
Q 020005 223 KNAI--LTAGFYQEK 235 (332)
Q Consensus 223 T~~T--~~s~lY~~~ 235 (332)
|.|- +...+.++.
T Consensus 190 TAGRl~ide~Lm~El 204 (451)
T COG0541 190 TAGRLHIDEELMDEL 204 (451)
T ss_pred CCCcccccHHHHHHH
Confidence 8774 345555554
No 436
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=32.32 E-value=4.8e+02 Score=25.31 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHcCCcEEEEeCCCchh-----hHHHHhhhCC-CCee--ech-HHHHHHHHHhcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCS-VPFL--HVS-ECVAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~~-iPii--~Iv-e~t~~~l~~~g~k 208 (332)
++.|.++|+|+|++.+..-|. +++++++..+ +|++ ++. ...++.+.+.|.+
T Consensus 99 ~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD 158 (325)
T cd00381 99 AEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGAD 158 (325)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCC
Confidence 445667899999987643332 2455666553 7765 222 1334555555553
No 437
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=32.19 E-value=2e+02 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred eEEEEechhhhchhhHHH---HHHhcCCeEEe
Q 020005 217 RIGVLAKNAILTAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~---~l~~~Gi~vv~ 245 (332)
|+.|+...+..+++++++ .|++.|+++.+
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~ 55 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEV 55 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEE
Confidence 898888777766777776 46667887644
No 438
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=32.17 E-value=3.3e+02 Score=24.94 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-------hhHHHHhhhCCCCee---ech-HHHHHHHHHhcCCCCcCCCCceEEEEech
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH-------IWHDEVCKGCSVPFL---HVS-ECVAKELKEANMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH-------~~~d~l~~~~~iPii---~Iv-e~t~~~l~~~g~k~~~~~~~~rVGlLaT~ 224 (332)
+.++.+++.|+|.+.+.=-.+- ..+.++.+.+.+|+. +|- .+-++.+...|.. || +++|.
T Consensus 39 ~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~--------~v-iigt~ 109 (233)
T cd04723 39 DVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGAS--------RV-IVGTE 109 (233)
T ss_pred HHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCC--------eE-EEcce
Confidence 3456788899998777654432 245677777777753 111 1333444555543 66 77987
Q ss_pred hhhchhhHHHHHHhcCC
Q 020005 225 AILTAGFYQEKLQHEGF 241 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi 241 (332)
.--. .+.++.++++|-
T Consensus 110 ~~~~-~~~~~~~~~~~~ 125 (233)
T cd04723 110 TLPS-DDDEDRLAALGE 125 (233)
T ss_pred eccc-hHHHHHHHhcCC
Confidence 6666 888888888864
No 439
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=32.13 E-value=1.5e+02 Score=31.17 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-----------hhHHHHhhhCCCCee------echH---------HHHHHHHHhcCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH-----------IWHDEVCKGCSVPFL------HVSE---------CVAKELKEANMKP 209 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH-----------~~~d~l~~~~~iPii------~Ive---------~t~~~l~~~g~k~ 209 (332)
+.+++..+.|||-|++---|+. -++.++.+.+.+|+- ++-| +.++.+.+.|.+
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Gad- 349 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGAD- 349 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCC-
Confidence 4567788999998888766652 246677778888863 2212 445667777776
Q ss_pred CcCCCCceEEEEechhhhc------------hhhHHHHHHhcCCe
Q 020005 210 LEAGSPLRIGVLAKNAILT------------AGFYQEKLQHEGFE 242 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T~~------------s~lY~~~l~~~Gi~ 242 (332)
||. ++|.+... ..+..+..+.+|-+
T Consensus 350 -------kV~-i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q 386 (538)
T PLN02617 350 -------KIS-IGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQ 386 (538)
T ss_pred -------EEE-EChHHHhChhhhhccccccCHHHHHHHHHHcCCc
Confidence 775 48866654 37888888888876
No 440
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.90 E-value=2.3e+02 Score=24.44 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred chhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
...|...++|=|+| |.+-....++.+++...- .++...++..... + ...|-+-.. ...+.-.+
T Consensus 27 ~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-----~~~~~~~~~~~~~--~-~~~D~vI~i-----S~sG~t~~--- 90 (179)
T cd05005 27 ISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLG-----LNVYVVGETTTPA--I-GPGDLLIAI-----SGSGETSS--- 90 (179)
T ss_pred HHHHHhCCeEEEEecChhHHHHHHHHHHHHhCC-----CeEEEeCCCCCCC--C-CCCCEEEEE-----cCCCCcHH---
Confidence 44566778999998 666666666666665321 1222222211100 0 001111000 01111122
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++.+.+.|+..|+|.++...+.
T Consensus 91 -~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 91 -VVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred -HHHHHHHHHHCCCeEEEEECCCCCch
Confidence 34556778899999999999876655
No 441
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=31.88 E-value=2e+02 Score=27.96 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=71.4
Q ss_pred cCCCcceeeccCCCCCcccccccCCCCCCCCcchhhhccCeEEEE-eCCChHHHHHHHHHHHHHhccC-CCCCEEEecCC
Q 020005 42 MPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDP 119 (332)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~IGIi-GGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p 119 (332)
..|+++-++....|..+-+..-+ - +..-+-|+ -|-|| .--++++.++-..... .+...+..--|
T Consensus 25 i~l~~v~~kkf~nge~~v~i~es-----------v--R~~dV~iiqsgsg~-ind~lmELLI~I~ac~~asa~~vTaViP 90 (316)
T KOG1448|consen 25 IELGKVNLKKFSNGETSVQIGES-----------V--RGEDVYIIQSGSGP-INDNLMELLIMINACKRASASRVTAVIP 90 (316)
T ss_pred CCcceeeeEEccCCcEEEecccc-----------c--ccCcEEEeccCCCc-chHHHHHHHHHHHhcchhhhheeEEecc
Confidence 57788877665555432222111 1 22334455 48898 3355677766655433 33333332222
Q ss_pred cchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH--
Q 020005 120 LLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-- 197 (332)
Q Consensus 120 ~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-- 197 (332)
. |||-+ .......|..+.+.+. ++.|..+|||.++..- .|. .+.+-.+++||-+.-..
T Consensus 91 ~------------Fpyar--q~~k~~~r~~i~aklV--anlls~aG~dhvItmD--lHa--~Q~qgfF~ipVdnly~~p~ 150 (316)
T KOG1448|consen 91 Y------------FPYAR--QDKKDKSRAPILAKLV--ANLLSSAGADHVITMD--LHA--SQIQGFFDIPVDNLYAEPA 150 (316)
T ss_pred C------------Ccccc--chhhhhhhhhHHHHHH--HhhhhccCCceEEEec--ccc--hhhCceeeccchhhccchH
Confidence 2 33311 1123445777777765 4778999999877532 243 46777789999988653
Q ss_pred HHHHHHHh
Q 020005 198 VAKELKEA 205 (332)
Q Consensus 198 t~~~l~~~ 205 (332)
....++.+
T Consensus 151 ~l~~ir~~ 158 (316)
T KOG1448|consen 151 VLNYIREN 158 (316)
T ss_pred HHHHHHhh
Confidence 33445543
No 442
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=31.84 E-value=2.3e+02 Score=24.54 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeC---CCc-------------hhhHHHHhhhCCCCeeechHHHHHHHHH
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPC---HLS-------------HIWHDEVCKGCSVPFLHVSECVAKELKE 204 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~C---NTa-------------H~~~d~l~~~~~iPii~Ive~t~~~l~~ 204 (332)
+.++..+.+.+.++.+.+.|+..|++.. +.. ..++.++.+..++|++++-+...+...+
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~~~~~~~ 162 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDLNAASRALYEA 162 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEecHHHHHHHHHH
Confidence 5667888888888999999999888731 110 1134566666678888876555444333
No 443
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.79 E-value=4.3e+02 Score=24.68 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
-++.+.++|+|.+++|= .|+=. .+...+.+++.|. ..+++-++.|-..+ .+..+
T Consensus 107 f~~~~~~aGvdgviipD---------------lp~ee-~~~~~~~~~~~gl---------~~i~lv~P~T~~er-i~~i~ 160 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVAD---------------LPLEE-SGDLVEAAKKHGV---------KPIFLVAPNADDER-LKQIA 160 (256)
T ss_pred HHHHHHHcCCCEEEECC---------------CChHH-HHHHHHHHHHCCC---------cEEEEECCCCCHHH-HHHHH
Confidence 34678899999999972 23211 3455566666665 45666666663323 33333
Q ss_pred Hhc-CCeEE
Q 020005 237 QHE-GFEVV 244 (332)
Q Consensus 237 ~~~-Gi~vv 244 (332)
+.. |+-.+
T Consensus 161 ~~~~gfiy~ 169 (256)
T TIGR00262 161 EKSQGFVYL 169 (256)
T ss_pred HhCCCCEEE
Confidence 333 45443
No 444
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=31.76 E-value=2.3e+02 Score=27.44 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.|+.|=+-|-.-...-+..+||.....+...++++|.-.. |.++. +. +-+ ..+-++
T Consensus 118 pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ART---da~~~-----------------~~---ld~-AI~Ra~ 173 (289)
T COG2513 118 PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIART---DALLV-----------------EG---LDD-AIERAQ 173 (289)
T ss_pred chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeeh---HHHHh-----------------cc---HHH-HHHHHH
Confidence 4566666666667777788888777766523777765421 11111 01 111 223345
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL 192 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii 192 (332)
...++|||.|..+--+...-+.++.+.+++|++
T Consensus 174 AY~eAGAD~if~~al~~~e~i~~f~~av~~pl~ 206 (289)
T COG2513 174 AYVEAGADAIFPEALTDLEEIRAFAEAVPVPLP 206 (289)
T ss_pred HHHHcCCcEEccccCCCHHHHHHHHHhcCCCee
Confidence 567899999999999987778888888886643
No 445
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=31.72 E-value=77 Score=30.58 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-H-------HHH--HHHHh-cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-C-------VAK--ELKEA-NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-~-------t~~--~l~~~-g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+. +|+|++=... |....++.+..++||||..+ . .+. .+.+. |. -...+|+++|
T Consensus 85 i~Dta~vls~y-~D~iviR~~~-~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-----l~g~~va~vG 157 (301)
T TIGR00670 85 LADTIKTLSGY-SDAIVIRHPL-EGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGR-----LDGLKIALVG 157 (301)
T ss_pred HHHHHHHHHHh-CCEEEEECCc-hhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEEc
Confidence 56667778888 9999999875 88889999999999999975 2 111 12222 21 1235899999
Q ss_pred ch---hhhchhhHHHHHHhcCCeEEecC
Q 020005 223 KN---AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 223 T~---~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
=- .+..|- -..+...|+++.+..
T Consensus 158 D~~~~~v~~Sl--~~~~a~~g~~v~~~~ 183 (301)
T TIGR00670 158 DLKYGRTVHSL--AEALTRFGVEVYLIS 183 (301)
T ss_pred cCCCCcHHHHH--HHHHHHcCCEEEEEC
Confidence 52 333333 345677798876633
No 446
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=31.69 E-value=4.6e+02 Score=24.96 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee-------echHHHHHHHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL-------HVSECVAKELK 203 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii-------~Ive~t~~~l~ 203 (332)
.+.++..++.|+|++++.--..+. +|.++.+.+++||+ .+-..++..+.
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 345667889999988775443221 46778888888866 34445555555
No 447
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=31.65 E-value=2e+02 Score=27.38 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=50.4
Q ss_pred chhhhccCeEEEEe---CCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHH
Q 020005 74 DALLNQANTVGIVG---GASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSL 149 (332)
Q Consensus 74 ~~~~~~~k~IGIiG---GmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~ 149 (332)
.-+|+..+++|.+| |+-......|..-.......- ..+.+...- .....|++.
T Consensus 120 Aa~~tkt~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np~i~v~~~~-----------------------~gs~~D~~~ 176 (306)
T PF02608_consen 120 AALMTKTGKVGFIGDIGGMDIPPVNRFINGFIAGAKYVNPDIKVNVSY-----------------------TGSFNDPAK 176 (306)
T ss_dssp HHHHHSSTEEEEEEEEES--SCTTHHHHHHHHHHHHHTTTT-EEEEEE------------------------SSSS-HHH
T ss_pred HHHHhccCcccccccccCCCcHhHHHHHHHHHHHHHHhCcCceEEEEE-----------------------cCCcCchHH
Confidence 34566778999999 998777777766665555432 333332211 001223332
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCC--eeec
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVP--FLHV 194 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iP--ii~I 194 (332)
- .+.++.|-..|||+|.-.++.+... ++..++ .+.. +|+.
T Consensus 177 ~----~~~a~~li~~GaDvI~~~ag~~~~gv~~aa~e-~g~~~~~IG~ 219 (306)
T PF02608_consen 177 A----KEAAEALIDQGADVIFPVAGGSGQGVIQAAKE-AGVYGYVIGV 219 (306)
T ss_dssp H----HHHHHHHHHTT-SEEEEE-CCCHHHHHHHHHH-HTHETEEEEE
T ss_pred H----HHHHHHHhhcCCeEEEECCCCCchHHHHHHHH-cCCceEEEEe
Confidence 2 4456678889999999988876664 333333 2444 4444
No 448
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.60 E-value=1.6e+02 Score=29.60 Aligned_cols=88 Identities=10% Similarity=0.203 Sum_probs=51.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
+++||||-.-...|=-||.+.+.+..+ ...++++.- ... | ..-..+| .++++
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p---~~~~~~~~~------~vQ-G--------------~~A~~~i----~~al~ 186 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFP---LVEVIIYPT------LVQ-G--------------EGAAASI----VAAIE 186 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCC---CCeEEEecC------cCc-C--------------ccHHHHH----HHHHH
Confidence 789999998888888888888876543 344555430 000 1 1112233 34444
Q ss_pred HHHHcCCcEEEEeCCCchh---h-H--HHHh---hhCCCCeeech
Q 020005 160 FLEKAGARCIVMPCHLSHI---W-H--DEVC---KGCSVPFLHVS 195 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~---~-~--d~l~---~~~~iPii~Iv 195 (332)
.+.+.+.|+|+|+=-.-.. | | +.|. ..+++|||+-|
T Consensus 187 ~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 187 RANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAV 231 (438)
T ss_pred HhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEec
Confidence 5555568999997544221 2 1 2222 24689998753
No 449
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.55 E-value=1.1e+02 Score=30.37 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=46.5
Q ss_pred CCcEEEEeC--CCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPC--HLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~C--NTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|.+|..- .-.|+.+++.++ .++|+++=.|.... .. .. +.|||-||.| |-.+.+....|+..|.
T Consensus 68 ~~d~vV~s~gi~~~~~~~~~a~~-~~i~v~~~~el~~~-~~--~~--------~~I~VTGT~GKTTTt~ll~~iL~~~g~ 135 (447)
T PRK02472 68 DFDLMVKNPGIPYTNPMVEKALE-KGIPIITEVELAYL-IS--EA--------PIIGITGSNGKTTTTTLIGEMLKAGGQ 135 (447)
T ss_pred cCCEEEECCCCCCCCHHHHHHHH-CCCcEEeHHHHHHH-hc--CC--------CEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence 588777755 234677777665 48999998875322 21 11 2799999988 5566777888887776
Q ss_pred eEEe
Q 020005 242 EVVL 245 (332)
Q Consensus 242 ~vv~ 245 (332)
.+..
T Consensus 136 ~~~~ 139 (447)
T PRK02472 136 HALL 139 (447)
T ss_pred CeEE
Confidence 5443
No 450
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.51 E-value=2.1e+02 Score=23.97 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=41.5
Q ss_pred EEechh----hhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCC---------hHHHHHHHHHHHHHHHhCCC
Q 020005 220 VLAKNA----ILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKD---------VEGARNLLRIALQVLLVRAV 286 (332)
Q Consensus 220 lLaT~~----T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~---------~~~a~~~l~~~~~~L~~~ga 286 (332)
+|||.+ .+...+....|+..|++|+......-...+. ++.+..+ .....+.+..+++.|.++|.
T Consensus 6 ~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v---~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~ 82 (132)
T TIGR00640 6 LVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIA---RQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGR 82 (132)
T ss_pred EEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH---HHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCC
Confidence 455544 3556788888999999998755431112232 3222211 12345678888888988776
Q ss_pred -CE-EEEC
Q 020005 287 -NT-VILA 292 (332)
Q Consensus 287 -d~-VILG 292 (332)
+. |+.|
T Consensus 83 ~~i~vivG 90 (132)
T TIGR00640 83 PDILVVVG 90 (132)
T ss_pred CCCEEEEe
Confidence 43 5555
No 451
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=31.48 E-value=1.3e+02 Score=30.47 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhh---hchhhHHHHHHhcCCeEE
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv 244 (332)
.+.++.++..+.+ +|+++..+.. -....+++.+++.|++++
T Consensus 163 ~ai~~ll~~~~W~--------~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~ 206 (458)
T cd06375 163 KAMAEILRFFNWT--------YVSTVASEGDYGETGIEAFEQEARLRNICIA 206 (458)
T ss_pred HHHHHHHHHCCCe--------EEEEEEeCchHHHHHHHHHHHHHHHCCeeEE
Confidence 3444445555665 9999986443 223456677788898875
No 452
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.46 E-value=3.2e+02 Score=23.04 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=37.8
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh-hchhh--HHHHHH
Q 020005 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI-LTAGF--YQEKLQ 237 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T-~~s~l--Y~~~l~ 237 (332)
..+.++|+|.+.+-..|.. . .+..+.+.+++.+.+ .-+| ++|-... -.... .++.|.
T Consensus 46 a~~~~adiVglS~L~t~~~-~------------~~~~~~~~l~~~gl~------~v~v-ivGG~~~i~~~d~~~~~~~L~ 105 (128)
T cd02072 46 AIETDADAILVSSLYGHGE-I------------DCKGLREKCDEAGLK------DILL-YVGGNLVVGKQDFEDVEKRFK 105 (128)
T ss_pred HHHcCCCEEEEeccccCCH-H------------HHHHHHHHHHHCCCC------CCeE-EEECCCCCChhhhHHHHHHHH
Confidence 3456888888877544433 1 134556677777653 1123 3332222 22233 567899
Q ss_pred hcCCeEEecCc
Q 020005 238 HEGFEVVLPDK 248 (332)
Q Consensus 238 ~~Gi~vv~P~~ 248 (332)
+.|+.-+.+..
T Consensus 106 ~~Gv~~vf~pg 116 (128)
T cd02072 106 EMGFDRVFAPG 116 (128)
T ss_pred HcCCCEEECcC
Confidence 99998776433
No 453
>PRK08005 epimerase; Validated
Probab=31.41 E-value=3.5e+02 Score=24.70 Aligned_cols=107 Identities=9% Similarity=0.118 Sum_probs=58.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~ 237 (332)
++.+.++|||.|.+-.-+.+ + ...+.+.+++.|. ++||-=-+.|-- ..+...+.
T Consensus 74 i~~~~~~gad~It~H~Ea~~---------------~-~~~~l~~Ik~~G~---------k~GlAlnP~Tp~-~~i~~~l~ 127 (210)
T PRK08005 74 LPWLAAIRPGWIFIHAESVQ---------------N-PSEILADIRAIGA---------KAGLALNPATPL-LPYRYLAL 127 (210)
T ss_pred HHHHHHhCCCEEEEcccCcc---------------C-HHHHHHHHHHcCC---------cEEEEECCCCCH-HHHHHHHH
Confidence 34577899999887554211 1 2446677888776 688877777733 34556665
Q ss_pred hcC-Ce--EEecCccchh--hchHHHHHHHhc---C-Ch--HHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 238 HEG-FE--VVLPDKATME--HTLIPALDALNR---K-DV--EGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 238 ~~G-i~--vv~P~~~~q~--~~l~~~i~~ik~---g-~~--~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
.-. +- .|.|.-..|. ....+-+..+++ . .+ +... =.+-+..+.+.|||.+|+|
T Consensus 128 ~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI--~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI--TLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC--CHHHHHHHHHCCCCEEEEC
Confidence 443 22 2457766675 111111222221 0 11 1110 0223446778899999999
No 454
>PRK05927 hypothetical protein; Provisional
Probab=31.36 E-value=52 Score=32.43 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE 108 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d 108 (332)
+.+.|.||.+|..+.+||..+++...+.
T Consensus 94 ~~i~i~gG~~p~~~~e~~~~~i~~ik~~ 121 (350)
T PRK05927 94 KTVLLQGGVHPQLGIDYLEELVRITVKE 121 (350)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999888765
No 455
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.35 E-value=4.1e+02 Score=24.71 Aligned_cols=122 Identities=7% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCe-----eechHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPF-----LHVSECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPi-----i~Ive~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
..+.++++++.|++-+.+.--..- ..+.++.+.+++|| ++-.+.+.+.+ ..|.. +| +
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~-~~G~~--------~v-v 101 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIF-SLGVE--------KV-S 101 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHH-HCCCC--------EE-E
Q ss_pred EechhhhchhhHHHHHHhcCCeEEecCccchhh-----chHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 221 LAKNAILTAGFYQEKLQHEGFEVVLPDKATMEH-----TLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 221 LaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~-----~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
++|...-...+.++..+++|-+.+..+-+.... .+ ..+|..+.......+.++.+.+.|++.+++
T Consensus 102 igs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v------~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 171 (258)
T PRK01033 102 INTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDV------YTHNGTKKLKKDPLELAKEYEALGAGEILL 171 (258)
T ss_pred EChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEE------EEcCCeecCCCCHHHHHHHHHHcCCCEEEE
No 456
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=31.24 E-value=3.2e+02 Score=23.48 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=47.0
Q ss_pred chhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
...|...++|=|+| |.+.....+|..++...-.. .....+...+. + ...|-+-... ..+.-.+
T Consensus 24 ~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~-----~~~~~~~~~~~--~-~~~Dv~I~iS-----~sG~t~~--- 87 (179)
T TIGR03127 24 ADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFN-----VYVVGETTTPS--I-KKGDLLIAIS-----GSGETES--- 87 (179)
T ss_pred HHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCe-----EEEeCCcccCC--C-CCCCEEEEEe-----CCCCcHH---
Confidence 45666788999998 76666777777777643221 11111110000 0 0011100000 0111112
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++.+++.|+..|+|..+...+.
T Consensus 88 -~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 88 -LVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred -HHHHHHHHHHCCCeEEEEECCCCCch
Confidence 34556778899999999998876665
No 457
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=31.13 E-value=96 Score=29.94 Aligned_cols=87 Identities=15% Similarity=0.035 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|++=+.. |..+.++.+.+++||||..+. .+.. +++. |. -.+.||+++|-
T Consensus 83 l~Dt~~vls~y-~D~iviR~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-----l~g~kva~vGD 155 (302)
T PRK14805 83 VADFAANLSCW-ADAIVARVFS-HSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGD-----VSKVKLAYVGD 155 (302)
T ss_pred HHHHHHHHHHh-CCEEEEeCCC-hhHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-----cCCcEEEEEcC
Confidence 55666778888 9999999874 778899999999999998553 1111 2222 21 13458999996
Q ss_pred hhhhchhhHHHHHHhcCCeEEecCc
Q 020005 224 NAILTAGFYQEKLQHEGFEVVLPDK 248 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~P~~ 248 (332)
...+ .+-+-..+...|+++.+..+
T Consensus 156 ~~~v-~~S~~~~~~~~g~~v~~~~P 179 (302)
T PRK14805 156 GNNV-THSLMYGAAILGATMTVICP 179 (302)
T ss_pred CCcc-HHHHHHHHHHcCCEEEEECC
Confidence 3222 12233456777988876433
No 458
>PLN02527 aspartate carbamoyltransferase
Probab=31.11 E-value=68 Score=31.02 Aligned_cols=83 Identities=8% Similarity=0.100 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-H-------HHH--HHHH-hcCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-C-------VAK--ELKE-ANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-~-------t~~--~l~~-~g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+. +|+|++=... |..+.++.+..++||||..+ . .+. .+.+ .|. -.+.+|+++|
T Consensus 86 ~~Dta~vls~y-~D~iviR~~~-~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-----l~g~kva~vG 158 (306)
T PLN02527 86 LEDTIRTVEGY-SDIIVLRHFE-SGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGR-----LDGIKVGLVG 158 (306)
T ss_pred HHHHHHHHHHh-CcEEEEECCC-hhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCC-----cCCCEEEEEC
Confidence 56667788888 9999999774 77789999999999999864 1 111 1222 121 1345999999
Q ss_pred ch---hhhchhhHHHHHHhc-CCeEEe
Q 020005 223 KN---AILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 223 T~---~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
-. .+..|- -..+... |+++.+
T Consensus 159 D~~~~rv~~Sl--~~~~~~~~g~~v~~ 183 (306)
T PLN02527 159 DLANGRTVRSL--AYLLAKYEDVKIYF 183 (306)
T ss_pred CCCCChhHHHH--HHHHHhcCCCEEEE
Confidence 53 133322 2345555 877754
No 459
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=31.00 E-value=4e+02 Score=26.11 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++-++.|.+.+-.+.++|||.|+ |+..+.-- +.+.-+.+-+.|+. .|+||.=..
T Consensus 136 dND~Tl~~L~~~Avs~A~AGADiVA-PSdMMDGr---------------V~aIR~aLd~~g~~--------~v~ImSYsa 191 (320)
T cd04823 136 LNDETVEVLCKQALVQAEAGADIVA-PSDMMDGR---------------IGAIREALDAEGFT--------NVSILSYAA 191 (320)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEE-cccchhhH---------------HHHHHHHHHHCCCC--------CCceeechH
Confidence 4556677788888889999999654 66654433 33333445556664 699999877
Q ss_pred hhchhhHHHH
Q 020005 226 ILTAGFYQEK 235 (332)
Q Consensus 226 T~~s~lY~~~ 235 (332)
-..|.||.-.
T Consensus 192 KyaS~fYGPF 201 (320)
T cd04823 192 KYASAFYGPF 201 (320)
T ss_pred Hhhhhccchh
Confidence 7788888654
No 460
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=30.86 E-value=67 Score=27.50 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCC--chhhHHHHh---hhCCCCeeechHHHHHHHHHh
Q 020005 155 RRKRVFLEKAGARCIVMPCHL--SHIWHDEVC---KGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT--aH~~~d~l~---~~~~iPii~Ive~t~~~l~~~ 205 (332)
.+.++..+++||.+++|--|. .-.+...+- ....||.++|-.+..+++++.
T Consensus 75 ~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 75 IDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 345567889999999999887 322211222 245799999999998888764
No 461
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=30.60 E-value=3.6e+02 Score=25.00 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=16.7
Q ss_pred CceEEEEechhhhchhhHH-------HHHHhcCCeEEe
Q 020005 215 PLRIGVLAKNAILTAGFYQ-------EKLQHEGFEVVL 245 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~-------~~l~~~Gi~vv~ 245 (332)
.+.|||+-.. +...+|. +.+++.|+.+++
T Consensus 56 ~~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~ 91 (327)
T PRK10423 56 TRTIGMLITA--STNPFYSELVRGVERSCFERGYSLVL 91 (327)
T ss_pred CCeEEEEeCC--CCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence 3579988753 2233443 445566877655
No 462
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.58 E-value=4e+02 Score=25.08 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCcE--EEEeC---------------
Q 020005 111 FPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARC--IVMPC--------------- 173 (332)
Q Consensus 111 ~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~--IvI~C--------------- 173 (332)
++++...+|+... ..+.++.|.+.|||+ |-+|-
T Consensus 15 i~yi~aG~P~~~~------------------------------~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~ 64 (258)
T PRK13111 15 IPYITAGDPDLET------------------------------SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASL 64 (258)
T ss_pred EEEEeCCCCCHHH------------------------------HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHH
Q ss_pred -------CCchhh--HHHHh-hhCCCCeeec----------hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH
Q 020005 174 -------HLSHIW--HDEVC-KGCSVPFLHV----------SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (332)
Q Consensus 174 -------NTaH~~--~d~l~-~~~~iPii~I----------ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~ 233 (332)
++.+.+ ..+++ +..++|++=| ++...+.+++.|. .-.++-=-.--+..-|.
T Consensus 65 ~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGv---------dGviipDLp~ee~~~~~ 135 (258)
T PRK13111 65 RALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGV---------DGLIIPDLPPEEAEELR 135 (258)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCC---------cEEEECCCCHHHHHHHH
Q ss_pred HHHHhcCCeEEe
Q 020005 234 EKLQHEGFEVVL 245 (332)
Q Consensus 234 ~~l~~~Gi~vv~ 245 (332)
+.+.++|++.+.
T Consensus 136 ~~~~~~gl~~I~ 147 (258)
T PRK13111 136 AAAKKHGLDLIF 147 (258)
T ss_pred HHHHHcCCcEEE
No 463
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=30.51 E-value=5.2e+02 Score=25.21 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeech------------------HHHHHHHHHhcCCCCcCCCCc
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS------------------ECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv------------------e~t~~~l~~~g~k~~~~~~~~ 216 (332)
..++ |-+.|+-+|+=|....... ...+.+..+||.|... .+.+..++..+.+
T Consensus 55 ~~C~-~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk-------- 125 (371)
T cd06388 55 AFCS-QYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWN-------- 125 (371)
T ss_pred HHHH-HHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCce--------
Confidence 3444 4467999998888775554 6888888999998532 1233333444444
Q ss_pred eEEEEechhh--hchhhHHHHHHhcCCeEEe--cC-ccchhhchHHHHHHHhcCCh-----HHHHHHHHHHHHHHHhCCC
Q 020005 217 RIGVLAKNAI--LTAGFYQEKLQHEGFEVVL--PD-KATMEHTLIPALDALNRKDV-----EGARNLLRIALQVLLVRAV 286 (332)
Q Consensus 217 rVGlLaT~~T--~~s~lY~~~l~~~Gi~vv~--P~-~~~q~~~l~~~i~~ik~g~~-----~~a~~~l~~~~~~L~~~ga 286 (332)
+++++.-... .....+.+.+++.|.+++. .. .... .+...+..+++... +-.-+....++++..+.|-
T Consensus 126 ~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~~~--d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm 203 (371)
T cd06388 126 RFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFNDA--SYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGK 203 (371)
T ss_pred EEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCCcH--HHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCc
Confidence 8999984221 1223344556666877653 11 1112 23344566665332 1122334445555556666
Q ss_pred CEE----EECCCCcc
Q 020005 287 NTV----ILASDDMQ 297 (332)
Q Consensus 287 d~V----ILGCTElp 297 (332)
..- |+|..++.
T Consensus 204 ~~~~y~~il~~~~~~ 218 (371)
T cd06388 204 HVKGYHYIIANLGFK 218 (371)
T ss_pred cccceEEEEccCccc
Confidence 554 77765543
No 464
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=30.51 E-value=1.4e+02 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeC
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPC 173 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~C 173 (332)
..|..+....|-...++|++.|+|.|++.+
T Consensus 77 ~~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~ 106 (125)
T PF03481_consen 77 PGDPEEAARNLFAALRELDELGVDLILIEG 106 (125)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCEEEEee
Confidence 467778888888888999999999999975
No 465
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=30.50 E-value=2.5e+02 Score=25.54 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCC-----eeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iP-----ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.++.|++.|..++++.-|+.-. +.+.+.+..+++ |+.-...++..+++.. ..++|.++|+.+.
T Consensus 20 ~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~-------~~~~v~v~G~~~~ 92 (236)
T TIGR01460 20 AEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF-------EGEKVYVIGVGEL 92 (236)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC-------CCCEEEEECCHHH
Confidence 455677888999988887666332 356677744443 5566777888887642 1237999998642
Q ss_pred hchhhHHHHHHhcCCe
Q 020005 227 LTAGFYQEKLQHEGFE 242 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~ 242 (332)
.+.++.+|++
T Consensus 93 ------~~~l~~~g~~ 102 (236)
T TIGR01460 93 ------RESLEGLGFR 102 (236)
T ss_pred ------HHHHHHcCCc
Confidence 4556777876
No 466
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=30.43 E-value=1.4e+02 Score=25.87 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=48.0
Q ss_pred CceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChH-HHHHHHHHHHHHHHhCCCCEEEECC
Q 020005 215 PLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVE-GARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~-~a~~~l~~~~~~L~~~gad~VILGC 293 (332)
++||-++|-+.-+-..-.++-++..|-+++.-..++- + --.+|-++ +.++.++.+.+++-..+. +|||||
T Consensus 6 gKkviiiGdRDGiPgpAie~c~k~~gaevvfs~TECf---V-----ctaAGAMDLEnQ~Rvk~~aEk~g~eNv-vVllGa 76 (154)
T PRK13265 6 GKKVIIIGDRDGIPGPAIEECVKTTGAEVVFSSTECF---V-----UTAAGAMDLENQKRVKDLAEKFGAENV-VVILGA 76 (154)
T ss_pred CcEEEEEecCCCCCcHHHHHHHhccCceEEEEeeeEE---E-----eecccccchHHHHHHHHHHHhcCCccE-EEEecc
Confidence 4589999998888888888888888999988655431 1 01124332 244566666665543444 688999
Q ss_pred CCc
Q 020005 294 DDM 296 (332)
Q Consensus 294 TEl 296 (332)
.|=
T Consensus 77 aea 79 (154)
T PRK13265 77 AEA 79 (154)
T ss_pred cch
Confidence 874
No 467
>PLN02540 methylenetetrahydrofolate reductase
Probab=30.36 E-value=4e+02 Score=28.23 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhCCCCEE
Q 020005 270 ARNLLRIALQVLLVRAVNTV 289 (332)
Q Consensus 270 a~~~l~~~~~~L~~~gad~V 289 (332)
..+...+.++.|.+.|++.|
T Consensus 246 Gieia~e~~~~L~~~Gv~Gi 265 (565)
T PLN02540 246 GIHLGTEMCKKILAHGIKGL 265 (565)
T ss_pred HHHHHHHHHHHHHHcCCCEE
Confidence 45667777888887775544
No 468
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=30.30 E-value=1.1e+02 Score=31.58 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
.+.++.++..+.+ +|+++..+... ....+++.+++.|++++
T Consensus 176 ~Ai~~l~~~f~wk--------~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~ 219 (510)
T cd06364 176 TAMADIIEYFRWN--------WVGTIAADDDYGRPGIEKFREEAEERDICID 219 (510)
T ss_pred HHHHHHHHHcCCe--------EEEEEEecCcchHHHHHHHHHHHHHCCcEEE
Confidence 3444444555655 89999765433 23446677888898875
No 469
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=30.23 E-value=2.5e+02 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhh-chhhHHH---HHHhcCCeEEe
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~-~s~lY~~---~l~~~Gi~vv~ 245 (332)
.++.+.+.+++.| + |+.|++.+..+ +++++++ .|++.|+++.+
T Consensus 13 ~l~~l~~~~~~~g-~--------r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~ 59 (380)
T cd08185 13 KLNELGEEALKPG-K--------KALIVTGNGSSKKTGYLDRVIELLKQAGVEVVV 59 (380)
T ss_pred HHHHHHHHHHhcC-C--------eEEEEeCCCchhhccHHHHHHHHHHHcCCeEEE
Confidence 3455555555533 3 89888877763 5666654 46666887643
No 470
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=30.22 E-value=1.1e+02 Score=29.70 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCcEEEE
Q 020005 156 RKRVFLEKAGARCIVM 171 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI 171 (332)
+.++.+.++|||+|++
T Consensus 147 ~~A~~l~~aGaD~I~v 162 (325)
T cd00381 147 EAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 4456788899999987
No 471
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=30.13 E-value=1.9e+02 Score=29.03 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.--- .|+.+.+.++ .++|+++=++...+..++ . +.|||-||.| |-.+.+....|+..|.
T Consensus 58 ~~d~vV~spgi~~~~p~~~~a~~-~~i~v~~~~el~~~~~~~--~--------~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 58 DADVVVVSAAIKDDNPEIVEAKE-RGIPVIRRAEMLAELMRF--R--------HSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-cCCceEeHHHHHHHHHhc--C--------cEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 58887764322 3566666554 589999998876655432 1 2799999988 4456677788888886
No 472
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=30.08 E-value=4.2e+02 Score=25.90 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++-++.|.+.+-...++|||+|+ |+.-+.--. .+.-+.+-+.|+. .|+||+=..
T Consensus 131 dND~Tl~~L~k~Als~A~AGADiVA-PSdMMDGrV---------------~aIR~aLd~~g~~--------~v~ImsYsa 186 (314)
T cd00384 131 DNDATLELLAKIAVSHAEAGADIVA-PSDMMDGRV---------------AAIREALDEAGFS--------DVPIMSYSA 186 (314)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeee-cccccccHH---------------HHHHHHHHHCCCC--------CCceeecHH
Confidence 4456677777778888999999654 665544433 3333445566664 799999888
Q ss_pred hhchhhHHHH
Q 020005 226 ILTAGFYQEK 235 (332)
Q Consensus 226 T~~s~lY~~~ 235 (332)
-..|.||.-.
T Consensus 187 KyaSafYGPF 196 (314)
T cd00384 187 KYASAFYGPF 196 (314)
T ss_pred HhhhhccchH
Confidence 8888888654
No 473
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.95 E-value=2.6e+02 Score=24.76 Aligned_cols=48 Identities=8% Similarity=0.028 Sum_probs=30.1
Q ss_pred CCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc-CCeEEe
Q 020005 189 VPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 189 iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
++=.+++....+.+.+.+. +|.+||++..+-...-+..-+++ |++++-
T Consensus 31 v~G~dl~~~l~~~~~~~~~---------~vfllG~~~~v~~~~~~~l~~~yP~l~i~g 79 (177)
T TIGR00696 31 VAGPDLMEELCQRAGKEKL---------PIFLYGGKPDVLQQLKVKLIKEYPKLKIVG 79 (177)
T ss_pred cChHHHHHHHHHHHHHcCC---------eEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3334556666666655443 89999987776666555554455 777653
No 474
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=29.94 E-value=2.8e+02 Score=27.31 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=19.5
Q ss_pred eEEEEechhhhc-hhhH---HHHHHhcCCeEEe
Q 020005 217 RIGVLAKNAILT-AGFY---QEKLQHEGFEVVL 245 (332)
Q Consensus 217 rVGlLaT~~T~~-s~lY---~~~l~~~Gi~vv~ 245 (332)
|+.|++.+.+.+ .+++ .+.|++.|+++.+
T Consensus 28 r~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~ 60 (383)
T cd08186 28 KVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVL 60 (383)
T ss_pred EEEEEcCccHHhhcChHHHHHHHHHHcCCeEEE
Confidence 888888776654 5544 4557777887654
No 475
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=29.89 E-value=2.6e+02 Score=25.39 Aligned_cols=38 Identities=18% Similarity=-0.059 Sum_probs=21.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhH-HHHhhhCCCCeeec
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHV 194 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~-d~l~~~~~iPii~I 194 (332)
.++.|.+.++|.|++.+...+..+ ..+++..++|++-+
T Consensus 49 ~i~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~PiV~i 87 (265)
T cd06354 49 NLEQLADAGYDLIVGVGFLLADALKEVAKQYPDQKFAII 87 (265)
T ss_pred HHHHHHhCCCCEEEEcCcchHHHHHHHHHHCCCCEEEEE
Confidence 345678899999998754433333 33332225555543
No 476
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.87 E-value=5.9e+02 Score=28.85 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh----hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHI----WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~----~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
+...+..+-.+++..||.--++-.. .+|-+...+.+|||+|..-.+-.+..+ +.+ .++.=||..-.-+.
T Consensus 89 l~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~k-----d~g--s~flQlg~Sieqqa 161 (1258)
T KOG1053|consen 89 LTQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPK-----DLG--STFLQLGPSIEQQA 161 (1258)
T ss_pred HHHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCC-----CCc--ceEEEeCCcHHHHH
Confidence 4566778889999999999888633 378899999999999964332221111 111 15666666555566
Q ss_pred hhHHHHHHhcC
Q 020005 230 GFYQEKLQHEG 240 (332)
Q Consensus 230 ~lY~~~l~~~G 240 (332)
.+.-+.|++++
T Consensus 162 ~Vml~iL~~yd 172 (1258)
T KOG1053|consen 162 QVMLKILEEYD 172 (1258)
T ss_pred HHHHHHHHHcC
Confidence 66667777773
No 477
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=29.80 E-value=2.2e+02 Score=25.71 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCee
Q 020005 158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFL 192 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii 192 (332)
++...+.|||+|-+. +|.. ..++++.+.+++|++
T Consensus 149 ~~~a~~~GaD~Ik~~-~~~~~~~~~~i~~~~~~pvv 183 (235)
T cd00958 149 ARIGAELGADIVKTK-YTGDAESFKEVVEGCPVPVV 183 (235)
T ss_pred HHHHHHHCCCEEEec-CCCCHHHHHHHHhcCCCCEE
Confidence 455667899999996 3321 224555555555543
No 478
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.78 E-value=4.8e+02 Score=24.78 Aligned_cols=100 Identities=11% Similarity=0.197 Sum_probs=57.9
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEec-CCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCS-DPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s-~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
+-+|||+ =+|-.+|..+...+.+.-..++.+.+-+++ -+.+ +++.+.... -
T Consensus 2 vvKiGii-KlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm------------------------~pe~~~~~~---~ 53 (277)
T PRK00994 2 VVKIGII-KLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKM------------------------GPEEVEEVV---K 53 (277)
T ss_pred eEEEEEE-EecccchHHHHHHHHHhhhcccCceEEEeccCCCC------------------------CHHHHHHHH---H
Confidence 3478998 577777777777777665544556665444 2221 222222211 1
Q ss_pred HHHHHcCCcEEEEe-CCCchhh---HHHHhhhCCCCeeechHHHH----HHHHHhcC
Q 020005 159 VFLEKAGARCIVMP-CHLSHIW---HDEVCKGCSVPFLHVSECVA----KELKEANM 207 (332)
Q Consensus 159 ~~Le~~Gad~IvI~-CNTaH~~---~d~l~~~~~iPii~Ive~t~----~~l~~~g~ 207 (332)
+.+++.+.|++++- =|.+-+- ..++-+..++|.|=|.|.-. +++++.|+
T Consensus 54 ~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~ 110 (277)
T PRK00994 54 KMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGL 110 (277)
T ss_pred HHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCC
Confidence 34678899975554 4544442 56666677888888776433 44555543
No 479
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=29.76 E-value=2.1e+02 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCcEEEEeC-CCchhhHHHHhh-----hCCCCeeechHHHHHHHHHhcCC
Q 020005 165 GARCIVMPC-HLSHIWHDEVCK-----GCSVPFLHVSECVAKELKEANMK 208 (332)
Q Consensus 165 Gad~IvI~C-NTaH~~~d~l~~-----~~~iPii~Ive~t~~~l~~~g~k 208 (332)
..|.|++.. |....+++.+.+ ..+++++-+.+.|++.+++.|.+
T Consensus 49 ~~~~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~ 98 (239)
T cd06578 49 EYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLT 98 (239)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCC
Confidence 567666654 445666777764 45899999999999999998876
No 480
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=29.74 E-value=85 Score=31.14 Aligned_cols=78 Identities=12% Similarity=-0.032 Sum_probs=42.4
Q ss_pred HHHHHHHHcCC----cEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHh-cCCCCcCCCCceEEEEechhhhc
Q 020005 156 RKRVFLEKAGA----RCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEA-NMKPLEAGSPLRIGVLAKNAILT 228 (332)
Q Consensus 156 ~~~~~Le~~Ga----d~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~-g~k~~~~~~~~rVGlLaT~~T~~ 228 (332)
++.++.++-|+ |+++++.-|+|-.|.. .-|-|++ ++...+.+.+. |+. .+ .--+.+=|+.|+-.
T Consensus 192 eA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~-----~~p~Ld~e~L~~I~~~v~~~~~~~---~~-~vPLVLHGgSGipd 262 (350)
T PRK09197 192 DVLYAYEALGKISGRFTIAASFGNVHGVYKP-----GNVKLRPEILKDSQEYVSKKFGLP---AK-PFDFVFHGGSGSTL 262 (350)
T ss_pred HHHHHHHHhCCCCcceEEeeecccccCCcCC-----CCCccCHHHHHHHHHHHHHhhCCC---CC-CCCEEEeCCCCCCH
Confidence 34566778888 9999999999998752 1243443 22332322111 110 00 11355667777755
Q ss_pred hhhHHHHHHhcCCeEE
Q 020005 229 AGFYQEKLQHEGFEVV 244 (332)
Q Consensus 229 s~lY~~~l~~~Gi~vv 244 (332)
.. +++. -+.|+.=+
T Consensus 263 e~-i~~a-i~~GI~KI 276 (350)
T PRK09197 263 EE-IREA-VSYGVVKM 276 (350)
T ss_pred HH-HHHH-HHCCCeeE
Confidence 44 5554 35576443
No 481
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.68 E-value=3.4e+02 Score=22.75 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=36.8
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~ 238 (332)
+...+.++|+|+|++....+. + .+..+++.+++.+.. .+-|++- |..-..-++ .+.+
T Consensus 47 ~aa~e~~adii~iSsl~~~~~-~------------~~~~~~~~L~~~g~~--------~i~vivG-G~~~~~~~~-~l~~ 103 (132)
T TIGR00640 47 RQAVEADVHVVGVSSLAGGHL-T------------LVPALRKELDKLGRP--------DILVVVG-GVIPPQDFD-ELKE 103 (132)
T ss_pred HHHHHcCCCEEEEcCchhhhH-H------------HHHHHHHHHHhcCCC--------CCEEEEe-CCCChHhHH-HHHH
Confidence 345577999999977552222 1 145666777776542 3444442 222223343 4778
Q ss_pred cCCeEEec
Q 020005 239 EGFEVVLP 246 (332)
Q Consensus 239 ~Gi~vv~P 246 (332)
.|+.-+.+
T Consensus 104 ~Gvd~~~~ 111 (132)
T TIGR00640 104 MGVAEIFG 111 (132)
T ss_pred CCCCEEEC
Confidence 89976663
No 482
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.50 E-value=1.5e+02 Score=28.34 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=18.4
Q ss_pred ceEEEEechhhhchhhHHHHHHhc--CCeEEe
Q 020005 216 LRIGVLAKNAILTAGFYQEKLQHE--GFEVVL 245 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~ 245 (332)
+||||+..+..-.-+=|.+.+.++ .+++++
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~ 46 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTLKRRNPIVEIIL 46 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHhCCCcEEEE
Confidence 499999987664433344555555 355543
No 483
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.35 E-value=2.8e+02 Score=21.69 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=14.4
Q ss_pred HHHHcCCcEEEEeCCCchh
Q 020005 160 FLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~ 178 (332)
.|++.++|+++|++.+...
T Consensus 57 ll~~~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 57 LLADEDVDAVIIATPPSSH 75 (120)
T ss_dssp HHHHTTESEEEEESSGGGH
T ss_pred HHHhhcCCEEEEecCCcch
Confidence 3556689999999988443
No 484
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=29.19 E-value=93 Score=29.41 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------------HHHHhhhCCCCe-eechH
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------------HDEVCKGCSVPF-LHVSE 196 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---------------~d~l~~~~~iPi-i~Ive 196 (332)
.++-+++.++....+..|++.|+|.|++--..--+| .++++...++|+ ||+..
T Consensus 26 ~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLr 94 (263)
T COG0434 26 AGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLR 94 (263)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeec
Confidence 446778999999999999999999999876654443 366777777775 45543
No 485
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=29.07 E-value=89 Score=30.71 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive 196 (332)
+.+.++-|... +|+|++=.+. |..+.++.+.+++||||..+
T Consensus 90 l~Dtarvls~y-~D~IviR~~~-~~~~~~~a~~~~vPVINa~~ 130 (338)
T PRK08192 90 LYDTARVLSTY-SDVIAMRHPD-AGSVKEFAEGSRVPVINGGD 130 (338)
T ss_pred HHHHHHHHHHc-CCEEEEeCCc-hhHHHHHHHhCCCCEEECCC
Confidence 55667788888 9999998775 77788999999999999876
No 486
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=28.98 E-value=1.5e+02 Score=25.68 Aligned_cols=103 Identities=16% Similarity=0.277 Sum_probs=44.0
Q ss_pred eeeccCCCCCcccccccCCCCCCCCcc-------hhhh--ccCeEEEEeCCChHHHHHHHHHHHHHhcc---C---CCCC
Q 020005 48 LLQTDESGKFQESKKSFGSKAAPFCSD-------ALLN--QANTVGIVGGASVDSTLNLLGKLVQLSGE---E---NDFP 112 (332)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~k~IGIiGGmGp~AT~~~y~kI~~~t~~---d---~~~~ 112 (332)
+.-.|+.|++.+..+............ .++. ++..|+| ||.++.+. .+++.|.+.... + ..++
T Consensus 23 ~v~ld~~G~v~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~kP~vI~v-~g~~~~s~-~l~~~v~~~v~~~~~~~~~~~i~ 100 (150)
T PF14639_consen 23 CVVLDENGEVLDHLKLVYNERDRERKEEDMERLKKFIEKHKPDVIAV-GGNSRESR-KLYDDVRDIVEELDEDEQMPPIP 100 (150)
T ss_dssp EEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE---SSTHHH-HHHHHHHHHHHHTTB-TTS-B--
T ss_pred EEEECCCCcEEEEEEEcCCccchHHHHHHHHHHHHHHHHcCCeEEEE-cCCChhHH-HHHHHHHHHHHHhhhcccCCCce
Confidence 345899999988877732211211111 1333 4667888 88887654 577766655542 2 5677
Q ss_pred EEEecCCcchhhhhhcC-CCchhhccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 020005 113 FLLCSDPLLNKELLSHD-RSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEK 163 (332)
Q Consensus 113 ~vi~s~p~ip~~ll~~~-~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~ 163 (332)
+++.+ .++.. +-..+ +.-.+ .+ +...++.+....+++|++
T Consensus 101 V~~v~-~~~A~-lY~~S~rA~~E--------FP-~~p~~~R~AIslAR~lQd 141 (150)
T PF14639_consen 101 VVIVD-DEVAR-LYSNSKRAAEE--------FP-DYPPLLRYAISLARYLQD 141 (150)
T ss_dssp EEE----TTHH-HHHTSHHHHHH--------ST-T--HHHHHHHHHHHHHH-
T ss_pred EEEEC-cHHHH-HHhcCHHHHHH--------CC-CCCHHHHHHHHHHHHhhC
Confidence 76655 23321 11111 00011 12 345666667777777763
No 487
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=28.97 E-value=3.5e+02 Score=22.79 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (332)
|.|...+.++++++.+.... ..+.+++++ + +..|.. .....++..+.+.+.++.+.+.|+.
T Consensus 38 g~~G~~~~~~l~~l~~~~~~-~~~d~v~i~--------~-G~ND~~---------~~~~~~~~~~~~~~li~~~~~~~~~ 98 (183)
T cd04501 38 GINGDTTSQMLVRFYEDVIA-LKPAVVIIM--------G-GTNDII---------VNTSLEMIKDNIRSMVELAEANGIK 98 (183)
T ss_pred CcCCccHHHHHHHHHHHHHh-cCCCEEEEE--------e-ccCccc---------cCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 66666677777777654332 245666655 1 111211 0123456777788888888899999
Q ss_pred EEEEe
Q 020005 168 CIVMP 172 (332)
Q Consensus 168 ~IvI~ 172 (332)
+|++.
T Consensus 99 ~il~~ 103 (183)
T cd04501 99 VILAS 103 (183)
T ss_pred EEEEe
Confidence 88875
No 488
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.90 E-value=3.7e+02 Score=27.57 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=46.9
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEe-chhhhchhhHHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLA-KNAILTAGFYQEKLQ 237 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLa-T~~T~~s~lY~~~l~ 237 (332)
+.+.+...|+|.+.|.|.... .+..+++.+++.... ..-|+| .-.| -.+++.|+
T Consensus 57 ~~l~~~~pdvVgis~~t~~~~--------------~a~~~~~~~k~~~P~--------~~iV~GG~h~t---~~~~~~l~ 111 (497)
T TIGR02026 57 ERLRAHCPDLVLITAITPAIY--------------IACETLKFARERLPN--------AIIVLGGIHPT---FMFHQVLT 111 (497)
T ss_pred HHHHhcCcCEEEEecCcccHH--------------HHHHHHHHHHHHCCC--------CEEEEcCCCcC---cCHHHHHh
Confidence 456677899999998875332 123345556654211 344454 3334 35777787
Q ss_pred hc-CCeEEecCccchhhchHHHHHHHhcCC
Q 020005 238 HE-GFEVVLPDKATMEHTLIPALDALNRKD 266 (332)
Q Consensus 238 ~~-Gi~vv~P~~~~q~~~l~~~i~~ik~g~ 266 (332)
+. ++++|+-.+.+. .+.+.++.++.|.
T Consensus 112 ~~p~vD~Vv~GEGE~--~~~~Ll~~l~~g~ 139 (497)
T TIGR02026 112 EAPWIDFIVRGEGEE--TVVKLIAALENHN 139 (497)
T ss_pred cCCCccEEEeCCcHH--HHHHHHHHHHcCC
Confidence 65 688877655443 2444456666554
No 489
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=28.84 E-value=4.5e+02 Score=25.65 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I 194 (332)
.++.+++ |+-+|+=|+.+.... ...+.+..+||+|..
T Consensus 55 ~c~Li~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~ 92 (363)
T cd06381 55 ACDLMNQ-GILALVTSTGCASAIALQSLTDAMHIPHLFI 92 (363)
T ss_pred HHHHHhc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEe
Confidence 3344555 999999999886654 566777888998873
No 490
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=28.81 E-value=90 Score=30.67 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|... +|+|++=+.. |..+.++.+.+++||||..+. .++. +.+. |. ...-.+.+|+++|-
T Consensus 87 l~Dtarvls~y-~D~iviR~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~--g~~l~glkv~~vGD 162 (338)
T PRK02255 87 LEDTARVLSRL-VDIIMARVDR-HQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPE--GKKLEDCKVVFVGD 162 (338)
T ss_pred HHHHHHHHHHh-CcEEEEecCC-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC--CCCCCCCEEEEECC
Confidence 55666778888 9999998875 778889999999999997442 1111 2222 10 00012459999996
Q ss_pred h-hhhchhhHHHHHHhcCCeEEec
Q 020005 224 N-AILTAGFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 224 ~-~T~~s~lY~~~l~~~Gi~vv~P 246 (332)
. .+..| .-..+...|+++.+.
T Consensus 163 ~~~v~~S--l~~~~~~~g~~v~~~ 184 (338)
T PRK02255 163 ATQVCVS--LMFIATKMGMDFVHF 184 (338)
T ss_pred CchHHHH--HHHHHHhCCCEEEEE
Confidence 2 23332 334566779888663
No 491
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=28.77 E-value=2.9e+02 Score=23.84 Aligned_cols=64 Identities=22% Similarity=0.141 Sum_probs=37.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (332)
+.-|+||.|.+... +-+.|.+.. ...+++.+....+ . .. ..+.++.|
T Consensus 2 tylitGG~gglg~~-la~~La~~~----~~~~il~~r~~~~----------~-----------~~-------~~~~i~~l 48 (181)
T PF08659_consen 2 TYLITGGLGGLGQS-LARWLAERG----ARRLILLGRSGAP----------S-----------AE-------AEAAIREL 48 (181)
T ss_dssp EEEEETTTSHHHHH-HHHHHHHTT-----SEEEEEESSGGG----------S-----------TT-------HHHHHHHH
T ss_pred EEEEECCccHHHHH-HHHHHHHcC----CCEEEEeccCCCc----------c-----------HH-------HHHHHHHH
Confidence 46789999998743 555555444 4457776622100 0 00 12345678
Q ss_pred HHcCCcEEEEeCCCchh
Q 020005 162 EKAGARCIVMPCHLSHI 178 (332)
Q Consensus 162 e~~Gad~IvI~CNTaH~ 178 (332)
++.|+.+..+.|.....
T Consensus 49 ~~~g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 49 ESAGARVEYVQCDVTDP 65 (181)
T ss_dssp HHTT-EEEEEE--TTSH
T ss_pred HhCCCceeeeccCccCH
Confidence 99999999999987554
No 492
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.75 E-value=90 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCC-cEEEEeCCCc-------hhhHHHHhhhCCCCee
Q 020005 153 NLRRKRVFLEKAGA-RCIVMPCHLS-------HIWHDEVCKGCSVPFL 192 (332)
Q Consensus 153 ~l~~~~~~Le~~Ga-d~IvI~CNTa-------H~~~d~l~~~~~iPii 192 (332)
.+.+..+.+.+.+- +-|+|-.|++ +.-.+.+++..+||++
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl 110 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVL 110 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEE
Confidence 34455566777665 4788888987 4557889999999976
No 493
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.33 E-value=5.2e+02 Score=24.46 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred CeEEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 81 NTVGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 81 k~IGIiG--GmGp~AT~~~y~kI~~~t~~d--~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.-|-+.| |=++.=|.+=.+++++.+.+. +..|++.--.. +-.+ ..+
T Consensus 41 ~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--------------------------~t~~----ai~ 90 (296)
T TIGR03249 41 EALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--------------------------NTSD----AIE 90 (296)
T ss_pred CEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--------------------------cHHH----HHH
Confidence 3455556 444555666667777665432 55776652200 0111 234
Q ss_pred HHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee-------echHHHHHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL-------HVSECVAKELKE 204 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii-------~Ive~t~~~l~~ 204 (332)
.++..++.|||++++-.-..+. +|.++.+.+++|++ ++-..++..+.+
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 5667888999987764443221 46777778888876 455555666654
No 494
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.24 E-value=51 Score=32.65 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
.++.++.++-|+|+++++--|+|-.|.
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGT~HG~Yk 202 (347)
T PRK09196 176 EEAADFVKKTQVDALAIAIGTSHGAYK 202 (347)
T ss_pred HHHHHHHHHhCcCeEhhhhccccCCCC
Confidence 345677889999999999999999875
No 495
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=28.18 E-value=2.9e+02 Score=27.47 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCCcccccccCCCCCCC-----Ccchhh---hccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcc----
Q 020005 54 SGKFQESKKSFGSKAAPF-----CSDALL---NQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLL---- 121 (332)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~i---- 121 (332)
|.|+|-.-.|-|-..|.+ |..-.+ ....+|-+=--.=|.-+++-.++|...+ ...+.+-++|+|++
T Consensus 85 svntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n--~~~i~fqilsnpeflaeg 162 (481)
T KOG2666|consen 85 SVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHN--SKGIKFQILSNPEFLAEG 162 (481)
T ss_pred EecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcC--CCCceeEeccChHHhccc
Confidence 566777767776655554 221111 1356777776777888888888887222 25688888899986
Q ss_pred --------hhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhh
Q 020005 122 --------NKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCK 185 (332)
Q Consensus 122 --------p~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~ 185 (332)
|||.+-+|+ ++++.. ..++.|. .-.+..=..-=+|++||.+.-+..|.+
T Consensus 163 taikdl~npdrvligg~-----------etpeg~-~av~~l~---~vyehwvp~~~iittntwsselsklaa 219 (481)
T KOG2666|consen 163 TAIKDLFNPDRVLIGGR-----------ETPEGF-QAVQALK---DVYEHWVPREQIITTNTWSSELSKLAA 219 (481)
T ss_pred chhhhhcCCceEEECCC-----------CChhHH-HHHHHHH---HHHHhhCcccceeeccccHHHHHHHHH
Confidence 334322221 122222 2222222 334455556678999997775555543
No 496
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=28.16 E-value=1.4e+02 Score=24.98 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=31.5
Q ss_pred HHHHHHcCCc-EEEEeCCCchhhHHHHhhhCCCCeeechHHHHH
Q 020005 158 RVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAK 200 (332)
Q Consensus 158 ~~~Le~~Gad-~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~ 200 (332)
++.|++.|++ ++.+|+.....+++.+. ..++.++....+...
T Consensus 4 ~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A 46 (155)
T cd07035 4 VEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGA 46 (155)
T ss_pred HHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHH
Confidence 4679999998 57788887777888887 456777877665443
No 497
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=28.15 E-value=1.1e+02 Score=29.70 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc-----------------hhhHHHHhhhC-CCCeeechHH
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLS-----------------HIWHDEVCKGC-SVPFLHVSEC 197 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTa-----------------H~~~d~l~~~~-~iPii~Ive~ 197 (332)
+.+.++.|+++|+|.|.+-+-|. ..++.++++.+ ++||+.-.+.
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 44566789999999999877653 11356777775 8999886553
No 498
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.15 E-value=2.1e+02 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT 175 (332)
.+.++.|++.|+|+|-+...+
T Consensus 231 ~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 231 IEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHHHcCCCEEEeCCCC
Confidence 455678999999999887665
No 499
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=28.07 E-value=5.5e+02 Score=25.18 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcC-CCCcCCCCceEEEEech
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANM-KPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~-k~~~~~~~~rVGlLaT~ 224 (332)
+.++-++.|.+.+-...++|||+|+ |+-.+.--. .+.-+.+-+.|+ . .|+||.=.
T Consensus 135 dND~Tl~~L~k~Avs~A~AGADiVA-PSdMMDGrV---------------~aIR~aLD~~G~~~--------~v~ImSYs 190 (320)
T cd04824 135 NNEASVKRLAEVALAYAKAGAHIVA-PSDMMDGRV---------------RAIKQALIQAGLGN--------KVSVMSYS 190 (320)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEe-cccccccHH---------------HHHHHHHHHCCCcc--------CCeeeehH
Confidence 4456677788888888999999665 555544333 333344555665 3 79999987
Q ss_pred hhhchhhHHHH
Q 020005 225 AILTAGFYQEK 235 (332)
Q Consensus 225 ~T~~s~lY~~~ 235 (332)
.-..|.||.-.
T Consensus 191 aKyaS~fYGPF 201 (320)
T cd04824 191 AKFASCLYGPF 201 (320)
T ss_pred HHhhhhccchH
Confidence 77788888654
No 500
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=27.93 E-value=55 Score=32.40 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDE 182 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~ 182 (332)
.++.++.++-|+|+++++--|+|-.|..
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~ 203 (347)
T PRK13399 176 DQAVDFVQRTGVDALAIAIGTSHGAYKF 203 (347)
T ss_pred HHHHHHHHHHCcCEEhhhhccccCCcCC
Confidence 3455677889999999999999998753
Done!