Query 020005
Match_columns 332
No_of_seqs 217 out of 1600
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ojc_A Putative aspartate/glut 100.0 2.6E-51 8.9E-56 377.0 21.7 223 80-327 2-231 (231)
2 3s81_A Putative aspartate race 100.0 3.2E-50 1.1E-54 377.4 19.8 222 79-328 25-253 (268)
3 1jfl_A Aspartate racemase; alp 100.0 1.8E-48 6.1E-53 356.1 20.9 223 80-327 1-227 (228)
4 2zsk_A PH1733, 226AA long hypo 100.0 7.9E-48 2.7E-52 351.5 22.5 220 80-326 1-225 (226)
5 2vvt_A Glutamate racemase; iso 100.0 1.7E-34 5.8E-39 273.4 20.4 217 72-327 16-242 (290)
6 3out_A Glutamate racemase; str 100.0 1.2E-34 4.2E-39 271.6 16.3 213 77-328 4-222 (268)
7 2oho_A Glutamate racemase; iso 100.0 3.8E-34 1.3E-38 268.5 18.9 214 74-327 6-229 (273)
8 3ist_A Glutamate racemase; str 100.0 9.4E-34 3.2E-38 265.7 19.3 213 80-328 5-224 (269)
9 3uhf_A Glutamate racemase; str 100.0 4E-34 1.4E-38 268.8 16.4 217 73-326 16-240 (274)
10 2jfq_A Glutamate racemase; cel 100.0 1.3E-33 4.5E-38 266.8 18.7 213 74-327 18-241 (286)
11 2gzm_A Glutamate racemase; enz 100.0 2.9E-32 1E-36 254.9 21.9 208 81-327 4-221 (267)
12 1zuw_A Glutamate racemase 1; ( 100.0 3.8E-32 1.3E-36 255.0 21.8 208 81-327 4-222 (272)
13 2dwu_A Glutamate racemase; iso 100.0 6.2E-31 2.1E-35 247.1 20.3 208 81-327 8-225 (276)
14 2jfn_A Glutamate racemase; cel 100.0 4.2E-31 1.4E-35 249.4 16.0 214 79-327 20-241 (285)
15 1b73_A Glutamate racemase; iso 100.0 5.5E-31 1.9E-35 244.5 11.7 205 82-326 2-213 (254)
16 2jfz_A Glutamate racemase; cel 100.0 3.5E-30 1.2E-34 239.3 15.4 210 82-327 2-224 (255)
17 2dgd_A 223AA long hypothetical 99.9 2.6E-25 8.7E-30 201.9 6.4 200 82-327 7-216 (223)
18 3qvl_A Putative hydantoin race 99.9 1.5E-23 5.3E-28 193.8 15.8 212 82-326 3-216 (245)
19 2xed_A Putative maleate isomer 99.9 5.1E-24 1.8E-28 199.8 10.6 210 80-326 25-252 (273)
20 2eq5_A 228AA long hypothetical 99.9 8.9E-24 3E-28 191.8 10.2 159 147-327 57-219 (228)
21 3ixl_A Amdase, arylmalonate de 99.9 2.7E-23 9.3E-28 191.5 7.1 163 149-328 50-226 (240)
22 3c3k_A Alanine racemase; struc 96.6 0.18 6.2E-06 45.1 18.3 158 158-329 57-254 (285)
23 2fep_A Catabolite control prot 96.6 0.22 7.7E-06 44.7 18.8 160 158-329 65-265 (289)
24 3hcw_A Maltose operon transcri 96.5 0.13 4.4E-06 46.5 17.0 210 79-329 6-262 (295)
25 3qvl_A Putative hydantoin race 96.5 0.016 5.6E-07 52.7 10.5 105 80-205 109-214 (245)
26 3o74_A Fructose transport syst 96.4 0.23 7.8E-06 43.7 17.7 205 80-328 2-248 (272)
27 2gzm_A Glutamate racemase; enz 96.4 0.027 9.3E-07 51.7 11.7 109 79-205 108-218 (267)
28 2dwu_A Glutamate racemase; iso 96.4 0.025 8.5E-07 52.2 11.5 109 79-205 112-222 (276)
29 3egc_A Putative ribose operon 96.4 0.21 7.3E-06 44.6 17.5 208 79-330 7-257 (291)
30 1qpz_A PURA, protein (purine n 96.4 0.21 7.1E-06 46.1 17.7 160 158-328 107-307 (340)
31 1dbq_A Purine repressor; trans 96.3 0.17 5.8E-06 45.1 16.4 161 157-328 55-256 (289)
32 3out_A Glutamate racemase; str 96.3 0.023 8E-07 52.4 10.7 108 78-205 109-218 (268)
33 3k9c_A Transcriptional regulat 96.3 0.16 5.4E-06 45.7 15.9 205 79-330 11-256 (289)
34 3e61_A Putative transcriptiona 96.3 0.24 8.1E-06 43.9 16.9 203 79-329 7-247 (277)
35 3g1w_A Sugar ABC transporter; 96.2 0.15 5E-06 46.0 15.6 214 77-331 1-260 (305)
36 1zuw_A Glutamate racemase 1; ( 96.2 0.041 1.4E-06 50.7 11.6 108 79-204 109-218 (272)
37 3h5o_A Transcriptional regulat 96.2 0.39 1.3E-05 44.2 18.4 162 157-330 110-310 (339)
38 3kke_A LACI family transcripti 96.1 0.22 7.7E-06 45.0 16.4 161 157-330 63-268 (303)
39 3dbi_A Sugar-binding transcrip 96.1 0.41 1.4E-05 44.0 18.4 211 79-330 60-313 (338)
40 3bbl_A Regulatory protein of L 96.1 0.22 7.4E-06 44.7 15.8 159 158-328 57-257 (287)
41 2vvt_A Glutamate racemase; iso 96.0 0.021 7.1E-07 53.2 9.0 109 79-205 129-239 (290)
42 2rgy_A Transcriptional regulat 96.0 0.29 1E-05 43.8 16.5 159 158-328 60-258 (290)
43 2qh8_A Uncharacterized protein 96.0 0.15 5.1E-06 46.4 14.4 79 157-245 61-174 (302)
44 3jy6_A Transcriptional regulat 96.0 0.77 2.6E-05 40.6 19.6 209 79-331 6-253 (276)
45 3brq_A HTH-type transcriptiona 96.0 0.45 1.5E-05 42.2 17.3 160 158-328 70-269 (296)
46 2jfq_A Glutamate racemase; cel 95.9 0.042 1.4E-06 51.0 10.2 109 79-205 127-238 (286)
47 2o20_A Catabolite control prot 95.8 0.77 2.6E-05 42.0 18.8 205 79-328 62-308 (332)
48 3jvd_A Transcriptional regulat 95.8 0.29 9.9E-06 45.2 15.7 201 79-329 63-301 (333)
49 3d8u_A PURR transcriptional re 95.6 0.41 1.4E-05 42.2 15.2 160 158-329 52-251 (275)
50 4fe7_A Xylose operon regulator 95.5 0.37 1.3E-05 46.0 15.8 200 80-328 25-273 (412)
51 3ojc_A Putative aspartate/glut 95.5 0.018 6.2E-07 51.8 6.0 102 217-323 4-115 (231)
52 3kjx_A Transcriptional regulat 95.5 0.62 2.1E-05 42.9 16.6 161 157-329 116-317 (344)
53 2dgd_A 223AA long hypothetical 95.5 0.061 2.1E-06 47.6 9.2 52 154-205 158-213 (223)
54 3l49_A ABC sugar (ribose) tran 95.4 1.4 4.6E-05 39.1 18.6 163 157-330 53-264 (291)
55 3bil_A Probable LACI-family tr 95.3 1.4 4.7E-05 40.8 18.6 159 158-328 115-310 (348)
56 3k4h_A Putative transcriptiona 95.3 0.93 3.2E-05 40.2 16.7 160 157-328 61-261 (292)
57 2qu7_A Putative transcriptiona 95.2 0.35 1.2E-05 43.1 13.5 203 79-329 7-257 (288)
58 3eaf_A ABC transporter, substr 95.1 0.56 1.9E-05 43.9 15.3 79 158-245 68-175 (391)
59 3e3m_A Transcriptional regulat 95.1 1.1 3.7E-05 41.5 17.0 162 157-330 118-321 (355)
60 3qk7_A Transcriptional regulat 95.0 0.85 2.9E-05 40.9 15.7 209 79-329 5-258 (294)
61 2xed_A Putative maleate isomer 95.0 0.082 2.8E-06 48.7 8.8 52 154-205 196-250 (273)
62 1byk_A Protein (trehalose oper 95.0 0.31 1.1E-05 42.6 12.3 158 158-328 51-238 (255)
63 3ist_A Glutamate racemase; str 95.0 0.1 3.5E-06 48.2 9.3 108 79-204 110-219 (269)
64 3ipc_A ABC transporter, substr 94.8 1 3.5E-05 41.2 15.9 80 157-244 61-170 (356)
65 3td9_A Branched chain amino ac 94.8 1.5 5E-05 40.4 16.9 127 158-295 73-238 (366)
66 3ixl_A Amdase, arylmalonate de 94.7 0.11 3.9E-06 46.9 8.9 52 154-205 167-222 (240)
67 2jfz_A Glutamate racemase; cel 94.7 0.11 3.7E-06 47.2 8.8 107 79-205 107-221 (255)
68 3lft_A Uncharacterized protein 94.7 0.61 2.1E-05 42.0 13.7 78 157-244 54-166 (295)
69 3rot_A ABC sugar transporter, 94.6 0.56 1.9E-05 42.1 13.3 211 80-328 3-261 (297)
70 3huu_A Transcription regulator 94.5 0.8 2.7E-05 41.2 14.2 209 79-330 21-273 (305)
71 2iks_A DNA-binding transcripti 94.5 0.75 2.6E-05 41.1 14.0 159 158-328 69-266 (293)
72 1jye_A Lactose operon represso 94.5 2.9 9.8E-05 38.5 19.5 160 158-329 111-308 (349)
73 2fvy_A D-galactose-binding per 94.5 1.6 5.5E-05 38.9 16.2 162 158-329 52-273 (309)
74 3l6u_A ABC-type sugar transpor 94.5 2.4 8.1E-05 37.5 18.4 215 79-330 7-266 (293)
75 3gv0_A Transcriptional regulat 94.4 0.78 2.7E-05 40.9 13.7 160 159-330 60-259 (288)
76 3hut_A Putative branched-chain 94.4 1 3.5E-05 41.2 14.8 127 158-294 64-227 (358)
77 2hsg_A Glucose-resistance amyl 94.4 0.74 2.5E-05 42.1 13.8 159 158-328 109-308 (332)
78 3h5t_A Transcriptional regulat 94.3 0.6 2.1E-05 43.4 13.1 159 158-330 121-337 (366)
79 2oho_A Glutamate racemase; iso 94.1 0.17 5.9E-06 46.4 8.7 108 79-205 117-226 (273)
80 3clk_A Transcription regulator 94.0 1.7 6E-05 38.5 15.3 160 158-329 58-255 (290)
81 3m9w_A D-xylose-binding peripl 94.0 3.1 0.0001 37.4 17.0 164 157-330 50-260 (313)
82 2zsk_A PH1733, 226AA long hypo 94.0 0.062 2.1E-06 47.7 5.3 57 267-323 55-112 (226)
83 3lkb_A Probable branched-chain 93.8 1.7 5.9E-05 40.4 15.4 127 157-294 66-231 (392)
84 3tb6_A Arabinose metabolism tr 93.8 3.3 0.00011 36.5 19.3 163 157-330 63-272 (298)
85 3o1i_D Periplasmic protein TOR 93.8 2.4 8.4E-05 37.5 15.8 215 79-330 4-265 (304)
86 1b73_A Glutamate racemase; iso 93.8 0.053 1.8E-06 49.2 4.6 106 79-205 105-211 (254)
87 2eq5_A 228AA long hypothetical 93.7 0.1 3.4E-06 46.2 6.2 56 150-205 159-216 (228)
88 2ioy_A Periplasmic sugar-bindi 93.7 1.4 4.7E-05 39.2 13.9 162 158-329 50-253 (283)
89 3hs3_A Ribose operon repressor 93.6 1.7 5.9E-05 38.4 14.4 200 79-330 9-249 (277)
90 2jfn_A Glutamate racemase; cel 93.6 0.16 5.4E-06 47.0 7.5 109 79-205 126-238 (285)
91 3vav_A 3-methyl-2-oxobutanoate 93.4 0.12 4.2E-06 47.9 6.3 44 151-195 172-215 (275)
92 4evq_A Putative ABC transporte 93.3 1.1 3.9E-05 41.1 13.0 78 159-244 75-183 (375)
93 1xg4_A Probable methylisocitra 93.2 0.077 2.6E-06 49.7 4.6 105 80-208 119-230 (295)
94 2rjo_A Twin-arginine transloca 93.1 2.2 7.5E-05 38.8 14.5 161 158-328 54-267 (332)
95 3gyb_A Transcriptional regulat 93.1 1.5 5.1E-05 38.6 13.0 157 159-330 54-247 (280)
96 3i09_A Periplasmic branched-ch 93.0 0.35 1.2E-05 44.9 9.1 80 158-245 63-173 (375)
97 3ksm_A ABC-type sugar transpor 93.0 1.3 4.5E-05 38.7 12.4 164 157-330 50-259 (276)
98 3uhf_A Glutamate racemase; str 92.9 0.34 1.2E-05 44.8 8.6 106 79-205 131-238 (274)
99 1jfl_A Aspartate racemase; alp 92.9 0.14 4.7E-06 45.5 5.7 101 217-323 3-113 (228)
100 3lop_A Substrate binding perip 92.9 2.1 7.2E-05 39.3 14.1 127 158-295 65-230 (364)
101 4eyg_A Twin-arginine transloca 92.8 0.45 1.5E-05 43.8 9.4 79 158-244 64-171 (368)
102 2h3h_A Sugar ABC transporter, 92.8 1.9 6.3E-05 38.9 13.4 160 158-327 50-251 (313)
103 2fn9_A Ribose ABC transporter, 92.8 4.8 0.00016 35.5 17.2 161 158-328 51-261 (290)
104 3snr_A Extracellular ligand-bi 92.6 0.96 3.3E-05 41.1 11.3 79 158-244 61-167 (362)
105 3n0w_A ABC branched chain amin 92.6 0.43 1.5E-05 44.4 9.0 80 158-245 65-175 (379)
106 2dri_A D-ribose-binding protei 92.5 2.3 7.8E-05 37.4 13.4 163 158-329 50-252 (271)
107 3brs_A Periplasmic binding pro 92.5 5.2 0.00018 35.1 20.0 162 158-329 58-261 (289)
108 1zlp_A PSR132, petal death pro 92.1 0.19 6.3E-06 47.6 5.7 56 153-208 190-252 (318)
109 3sg0_A Extracellular ligand-bi 91.8 0.99 3.4E-05 41.5 10.4 79 158-244 81-191 (386)
110 2q5c_A NTRC family transcripti 91.6 1.3 4.3E-05 38.6 10.2 74 156-243 43-120 (196)
111 3b8i_A PA4872 oxaloacetate dec 91.6 0.2 6.9E-06 46.7 5.3 53 155-208 171-229 (287)
112 1m3u_A 3-methyl-2-oxobutanoate 91.4 0.31 1.1E-05 44.9 6.3 44 151-195 160-203 (264)
113 3gbv_A Putative LACI-family tr 91.4 0.71 2.4E-05 41.0 8.7 164 157-329 61-269 (304)
114 3i45_A Twin-arginine transloca 91.3 1.5 5E-05 40.8 11.1 80 158-245 65-177 (387)
115 3eoo_A Methylisocitrate lyase; 91.3 0.3 1E-05 45.8 6.2 105 80-208 123-234 (298)
116 2h0a_A TTHA0807, transcription 91.3 1.5 5.1E-05 38.5 10.6 156 159-328 49-247 (276)
117 3hsy_A Glutamate receptor 2; l 91.3 3.8 0.00013 38.1 14.1 78 158-244 53-152 (376)
118 3g85_A Transcriptional regulat 91.2 1.3 4.5E-05 39.2 10.3 159 160-330 63-261 (289)
119 1o66_A 3-methyl-2-oxobutanoate 91.2 0.28 9.6E-06 45.5 5.8 43 152-195 161-203 (275)
120 3miz_A Putative transcriptiona 91.1 1.2 4.2E-05 39.8 10.0 163 157-330 62-269 (301)
121 2vk2_A YTFQ, ABC transporter p 90.7 3.3 0.00011 37.0 12.6 134 158-298 51-231 (306)
122 1oy0_A Ketopantoate hydroxymet 90.6 0.32 1.1E-05 45.2 5.7 43 152-195 179-221 (281)
123 3cs3_A Sugar-binding transcrip 90.6 6.8 0.00023 34.3 14.4 124 195-329 106-247 (277)
124 3s81_A Putative aspartate race 90.2 0.59 2E-05 42.9 7.1 55 151-205 195-249 (268)
125 1pea_A Amidase operon; gene re 90.1 3 0.0001 38.7 12.1 79 158-244 67-172 (385)
126 3ctp_A Periplasmic binding pro 89.8 5.3 0.00018 36.2 13.3 154 158-328 109-300 (330)
127 1jx6_A LUXP protein; protein-l 89.0 5.6 0.00019 36.1 12.8 159 158-328 97-303 (342)
128 3ih1_A Methylisocitrate lyase; 88.9 1 3.5E-05 42.3 7.7 55 154-208 177-238 (305)
129 2x7x_A Sensor protein; transfe 88.2 5.8 0.0002 35.9 12.3 176 80-298 6-226 (325)
130 3h75_A Periplasmic sugar-bindi 87.7 6.9 0.00023 35.7 12.6 131 196-329 127-277 (350)
131 3h5l_A Putative branched-chain 87.7 2.1 7.2E-05 40.3 9.2 77 216-294 165-253 (419)
132 1usg_A Leucine-specific bindin 87.6 15 0.00052 32.8 15.7 78 159-244 63-170 (346)
133 2qiw_A PEP phosphonomutase; st 87.4 0.88 3E-05 41.5 6.1 38 154-191 170-207 (255)
134 3lye_A Oxaloacetate acetyl hyd 87.1 1.4 5E-05 41.3 7.5 105 80-208 128-242 (307)
135 2pju_A Propionate catabolism o 86.2 3.4 0.00012 36.9 9.2 97 161-292 59-161 (225)
136 3o21_A Glutamate receptor 3; p 85.6 13 0.00043 34.8 13.4 78 159-245 63-162 (389)
137 2hjp_A Phosphonopyruvate hydro 84.9 1.1 3.7E-05 41.8 5.4 105 80-207 115-229 (290)
138 3uug_A Multiple sugar-binding 83.7 23 0.0008 31.5 15.4 119 80-239 3-160 (330)
139 3qek_A NMDA glutamate receptor 83.7 6.7 0.00023 36.3 10.4 78 157-242 57-169 (384)
140 2ze3_A DFA0005; organic waste 82.9 1.3 4.5E-05 40.8 5.0 38 154-191 170-207 (275)
141 3r7f_A Aspartate carbamoyltran 82.6 7.9 0.00027 36.1 10.3 84 154-245 81-178 (304)
142 3eag_A UDP-N-acetylmuramate:L- 82.6 7.8 0.00027 35.9 10.3 70 164-243 65-137 (326)
143 4gpa_A Glutamate receptor 4; P 81.9 21 0.00072 32.4 13.0 78 160-245 64-162 (389)
144 3saj_A Glutamate receptor 1; r 81.9 4.1 0.00014 37.9 8.2 80 157-245 59-160 (384)
145 3kg2_A Glutamate receptor 2; I 81.8 12 0.00042 38.3 12.5 80 157-245 52-153 (823)
146 4f11_A Gamma-aminobutyric acid 81.2 7.8 0.00027 36.5 10.0 73 165-245 85-187 (433)
147 4f06_A Extracellular ligand-bi 80.5 4.8 0.00016 37.3 8.1 80 158-245 64-172 (371)
148 8abp_A L-arabinose-binding pro 80.0 28 0.00097 30.5 12.8 166 157-328 49-270 (306)
149 3hgj_A Chromate reductase; TIM 78.8 20 0.00069 33.6 11.9 126 90-246 197-342 (349)
150 1s2w_A Phosphoenolpyruvate pho 76.2 3.9 0.00013 38.0 5.9 55 154-208 172-233 (295)
151 3fa4_A 2,3-dimethylmalate lyas 76.1 5.6 0.00019 37.2 7.0 105 80-208 120-234 (302)
152 3h6g_A Glutamate receptor, ion 76.0 19 0.00064 33.3 10.8 77 160-245 66-170 (395)
153 3tdn_A FLR symmetric alpha-bet 75.8 11 0.00037 33.3 8.6 79 155-242 38-128 (247)
154 3oow_A Phosphoribosylaminoimid 75.6 5.7 0.0002 33.9 6.3 82 82-194 7-89 (166)
155 1tjy_A Sugar transport protein 74.7 22 0.00075 31.9 10.6 163 158-330 53-260 (316)
156 3lk7_A UDP-N-acetylmuramoylala 74.2 21 0.00072 34.5 11.0 67 166-244 73-142 (451)
157 3d02_A Putative LACI-type tran 73.5 46 0.0016 29.0 14.3 53 275-328 202-259 (303)
158 3tsm_A IGPS, indole-3-glycerol 73.3 20 0.00068 32.8 9.9 82 156-245 83-174 (272)
159 1gud_A ALBP, D-allose-binding 72.8 21 0.00073 31.3 9.9 161 158-328 52-263 (288)
160 3gr7_A NADPH dehydrogenase; fl 72.2 19 0.00066 33.7 9.8 82 155-245 232-330 (340)
161 3trh_A Phosphoribosylaminoimid 71.2 12 0.00039 32.1 7.1 83 81-194 7-90 (169)
162 1u11_A PURE (N5-carboxyaminoim 69.9 8.7 0.0003 33.2 6.2 89 74-195 16-106 (182)
163 3kuu_A Phosphoribosylaminoimid 69.6 9.4 0.00032 32.8 6.2 82 82-194 14-96 (174)
164 3q58_A N-acetylmannosamine-6-p 69.3 23 0.00078 31.3 9.1 37 154-193 38-74 (229)
165 3lp6_A Phosphoribosylaminoimid 69.2 15 0.0005 31.6 7.4 84 80-194 7-91 (174)
166 3om0_A Glutamate receptor, ion 69.1 23 0.00079 32.7 9.6 77 159-244 64-170 (393)
167 3nvt_A 3-deoxy-D-arabino-heptu 68.7 80 0.0027 30.2 13.4 81 87-175 88-179 (385)
168 3dah_A Ribose-phosphate pyroph 68.1 8.1 0.00028 36.3 6.1 153 158-325 118-307 (319)
169 4hv4_A UDP-N-acetylmuramate--L 67.8 44 0.0015 32.7 11.7 67 165-242 81-150 (494)
170 1vli_A Spore coat polysacchari 67.6 37 0.0013 32.7 10.7 127 154-298 46-199 (385)
171 4b4k_A N5-carboxyaminoimidazol 66.7 13 0.00046 32.0 6.6 81 82-194 24-106 (181)
172 4grd_A N5-CAIR mutase, phospho 66.7 14 0.00049 31.7 6.8 85 79-195 11-97 (173)
173 1dp4_A Atrial natriuretic pept 65.7 41 0.0014 31.2 10.7 80 157-244 69-184 (435)
174 3tpf_A Otcase, ornithine carba 63.9 32 0.0011 32.0 9.3 85 154-245 81-175 (307)
175 3qel_B Glutamate [NMDA] recept 63.8 43 0.0015 31.0 10.3 76 155-239 53-159 (364)
176 4f2g_A Otcase 1, ornithine car 63.7 25 0.00085 32.8 8.5 84 154-245 90-183 (309)
177 3vnd_A TSA, tryptophan synthas 63.3 47 0.0016 30.1 10.2 12 282-293 225-236 (267)
178 3igs_A N-acetylmannosamine-6-p 62.6 39 0.0013 29.8 9.3 59 154-223 38-110 (232)
179 3grf_A Ornithine carbamoyltran 62.3 24 0.00083 33.1 8.2 90 154-245 90-191 (328)
180 3ckm_A YRAM (HI1655), LPOA; pe 62.3 69 0.0024 28.7 11.2 127 158-296 51-212 (327)
181 4fb5_A Probable oxidoreductase 62.1 15 0.00052 33.9 6.8 105 72-198 15-134 (393)
182 3obb_A Probable 3-hydroxyisobu 61.8 95 0.0032 28.2 12.2 32 79-117 2-33 (300)
183 3sm9_A Mglur3, metabotropic gl 61.7 61 0.0021 31.2 11.4 92 196-296 174-278 (479)
184 1qop_A Tryptophan synthase alp 61.3 52 0.0018 29.4 10.1 19 155-173 34-52 (268)
185 1twd_A Copper homeostasis prot 61.0 32 0.0011 31.2 8.4 82 158-245 14-120 (256)
186 3ors_A N5-carboxyaminoimidazol 60.8 17 0.00058 30.9 6.1 83 81-194 4-87 (163)
187 3gd5_A Otcase, ornithine carba 60.1 32 0.0011 32.2 8.6 84 154-245 93-186 (323)
188 3noy_A 4-hydroxy-3-methylbut-2 60.1 13 0.00045 35.5 5.9 37 156-192 50-88 (366)
189 3lkv_A Uncharacterized conserv 59.6 97 0.0033 27.6 14.0 83 155-245 59-174 (302)
190 4fxs_A Inosine-5'-monophosphat 58.4 1.2E+02 0.004 29.9 12.8 53 156-208 234-295 (496)
191 3nav_A Tryptophan synthase alp 58.3 59 0.002 29.5 9.9 55 180-244 88-154 (271)
192 2h4a_A YRAM (HI1655); perplasm 58.1 17 0.00057 33.7 6.2 81 156-244 47-154 (325)
193 4ep1_A Otcase, ornithine carba 58.1 39 0.0013 32.0 8.8 84 154-245 115-208 (340)
194 3ks9_A Mglur1, metabotropic gl 58.0 1.2E+02 0.004 29.3 12.7 74 163-244 126-229 (496)
195 4had_A Probable oxidoreductase 58.0 16 0.00054 33.6 6.1 110 72-206 15-137 (350)
196 4a8t_A Putrescine carbamoyltra 57.6 79 0.0027 29.8 10.9 88 154-245 108-204 (339)
197 3kwl_A Uncharacterized protein 57.1 11 0.00037 37.7 5.0 59 144-202 427-494 (514)
198 1jcn_A Inosine monophosphate d 56.9 1.1E+02 0.0038 29.9 12.4 53 156-208 258-319 (514)
199 2e4u_A Metabotropic glutamate 56.0 77 0.0026 31.0 11.1 91 196-295 175-278 (555)
200 1xmp_A PURE, phosphoribosylami 55.9 23 0.00078 30.3 6.1 84 81-195 12-96 (170)
201 4h31_A Otcase, ornithine carba 55.6 74 0.0025 30.1 10.4 85 154-245 115-211 (358)
202 3kwl_A Uncharacterized protein 55.5 46 0.0016 33.0 9.3 161 146-321 301-494 (514)
203 3qja_A IGPS, indole-3-glycerol 55.4 61 0.0021 29.4 9.5 83 155-245 75-167 (272)
204 1vzw_A Phosphoribosyl isomeras 55.0 52 0.0018 28.5 8.8 75 156-240 36-122 (244)
205 3sds_A Ornithine carbamoyltran 54.1 71 0.0024 30.2 10.0 88 154-245 111-217 (353)
206 1ivn_A Thioesterase I; hydrola 54.0 49 0.0017 26.8 8.0 66 88-173 41-107 (190)
207 1vc4_A Indole-3-glycerol phosp 53.7 76 0.0026 28.3 9.7 79 156-245 69-159 (254)
208 3s99_A Basic membrane lipoprot 53.5 80 0.0027 29.5 10.3 31 76-106 145-175 (356)
209 1zq6_A Otcase, ornithine carba 53.5 53 0.0018 31.3 8.9 88 154-245 115-225 (359)
210 2y88_A Phosphoribosyl isomeras 52.8 60 0.002 28.0 8.8 75 156-240 35-121 (244)
211 1z41_A YQJM, probable NADH-dep 52.7 60 0.0021 30.1 9.2 81 154-243 231-328 (338)
212 1vrd_A Inosine-5'-monophosphat 52.5 1.6E+02 0.0055 28.5 12.7 53 156-208 240-301 (494)
213 3rg8_A Phosphoribosylaminoimid 52.3 51 0.0018 27.8 7.7 84 81-195 3-88 (159)
214 4ekn_B Aspartate carbamoyltran 52.2 97 0.0033 28.6 10.4 85 154-245 86-183 (306)
215 4a8p_A Putrescine carbamoyltra 51.7 87 0.003 29.7 10.1 88 154-245 86-182 (355)
216 2wqp_A Polysialic acid capsule 51.5 40 0.0014 32.0 7.7 127 154-298 37-188 (349)
217 1thf_D HISF protein; thermophI 51.1 81 0.0028 27.3 9.4 76 156-241 34-122 (253)
218 1gvf_A Tagatose-bisphosphate a 50.9 25 0.00086 32.4 6.1 25 157-181 160-184 (286)
219 3qi7_A Putative transcriptiona 49.9 70 0.0024 30.5 9.2 77 158-244 104-192 (371)
220 1o4v_A Phosphoribosylaminoimid 49.8 28 0.00095 30.1 5.7 119 80-236 13-140 (183)
221 1dxh_A Ornithine carbamoyltran 48.9 1.3E+02 0.0043 28.3 10.7 87 154-247 90-187 (335)
222 1vlv_A Otcase, ornithine carba 48.9 93 0.0032 29.1 9.8 85 154-247 103-199 (325)
223 4amu_A Ornithine carbamoyltran 48.8 92 0.0031 29.6 9.8 85 154-245 116-210 (365)
224 1h5y_A HISF; histidine biosynt 48.6 75 0.0026 27.1 8.7 78 155-241 36-125 (253)
225 1j6u_A UDP-N-acetylmuramate-al 48.5 65 0.0022 31.2 9.0 70 165-243 71-143 (469)
226 1rvg_A Fructose-1,6-bisphospha 48.2 17 0.00058 33.9 4.5 51 157-207 158-226 (305)
227 1p3d_A UDP-N-acetylmuramate--a 48.1 38 0.0013 32.9 7.2 68 164-242 76-146 (475)
228 4g9p_A 4-hydroxy-3-methylbut-2 48.0 26 0.0009 33.9 5.9 36 158-193 44-86 (406)
229 1jdp_A NPR-C, atrial natriuret 48.0 45 0.0015 31.2 7.6 73 165-245 84-190 (441)
230 2ekc_A AQ_1548, tryptophan syn 47.9 96 0.0033 27.6 9.5 79 155-243 34-150 (262)
231 3l5l_A Xenobiotic reductase A; 47.5 56 0.0019 30.7 8.2 79 154-241 248-344 (363)
232 3iwp_A Copper homeostasis prot 47.2 46 0.0016 30.7 7.2 83 157-245 51-158 (287)
233 1pvv_A Otcase, ornithine carba 46.7 94 0.0032 28.9 9.4 83 154-245 91-184 (315)
234 3mil_A Isoamyl acetate-hydroly 46.5 85 0.0029 26.1 8.5 71 88-173 50-121 (240)
235 1geq_A Tryptophan synthase alp 46.5 1.2E+02 0.0042 26.1 9.8 29 180-208 72-110 (248)
236 3lzd_A DPH2; diphthamide biosy 46.4 55 0.0019 31.4 7.9 94 150-248 66-186 (378)
237 3dzc_A UDP-N-acetylglucosamine 45.8 1.9E+02 0.0065 26.9 11.8 112 79-194 24-141 (396)
238 3q94_A Fructose-bisphosphate a 45.8 28 0.00097 32.1 5.6 24 157-180 164-187 (288)
239 2i6u_A Otcase, ornithine carba 45.5 1.7E+02 0.0057 27.0 10.9 85 154-247 84-180 (307)
240 1rrm_A Lactaldehyde reductase; 44.9 53 0.0018 30.9 7.5 43 195-245 19-64 (386)
241 2w70_A Biotin carboxylase; lig 44.5 29 0.001 33.0 5.7 21 80-102 2-22 (449)
242 3csu_A Protein (aspartate carb 44.0 1.1E+02 0.0036 28.5 9.3 87 153-248 87-189 (310)
243 3usb_A Inosine-5'-monophosphat 43.8 2.4E+02 0.0083 27.7 12.5 107 155-292 258-388 (511)
244 2f00_A UDP-N-acetylmuramate--L 43.0 42 0.0014 32.7 6.7 68 164-242 77-147 (491)
245 2w37_A Ornithine carbamoyltran 42.9 2.1E+02 0.0073 27.0 11.3 85 154-247 112-208 (359)
246 3ado_A Lambda-crystallin; L-gu 42.6 42 0.0015 31.2 6.3 31 216-248 7-37 (319)
247 4djd_D C/Fe-SP, corrinoid/iron 42.4 2.1E+02 0.0073 26.6 11.1 79 158-245 86-185 (323)
248 4h08_A Putative hydrolase; GDS 42.3 1.4E+02 0.0047 24.3 10.1 28 146-173 90-117 (200)
249 2bdq_A Copper homeostasis prot 42.2 51 0.0017 29.3 6.4 104 162-290 18-151 (224)
250 3sho_A Transcriptional regulat 42.1 1.1E+02 0.0036 25.0 8.3 92 74-179 33-128 (187)
251 3bfj_A 1,3-propanediol oxidore 41.5 65 0.0022 30.3 7.6 43 195-245 21-68 (387)
252 3ox4_A Alcohol dehydrogenase 2 41.1 29 0.001 32.9 5.1 29 216-244 32-63 (383)
253 3jvd_A Transcriptional regulat 40.8 87 0.003 28.1 8.1 58 215-294 64-128 (333)
254 1h5y_A HISF; histidine biosynt 39.6 1.5E+02 0.005 25.2 9.1 51 157-207 159-221 (253)
255 1ep3_A Dihydroorotate dehydrog 39.5 1.4E+02 0.0047 26.7 9.2 17 156-172 180-196 (311)
256 4gnr_A ABC transporter substra 39.3 2E+02 0.007 25.4 16.4 77 216-294 144-229 (353)
257 3hp4_A GDSL-esterase; psychrot 39.3 73 0.0025 25.4 6.7 72 83-173 39-111 (185)
258 3dbi_A Sugar-binding transcrip 39.1 96 0.0033 27.6 8.1 32 214-245 60-98 (338)
259 1vlj_A NADH-dependent butanol 38.7 84 0.0029 29.8 8.0 43 195-245 31-77 (407)
260 1h7n_A 5-aminolaevulinic acid 38.6 2.3E+02 0.0078 26.7 10.5 109 146-291 153-262 (342)
261 1zjj_A Hypothetical protein PH 38.1 1.7E+02 0.0059 25.0 9.4 77 155-245 23-107 (263)
262 3miz_A Putative transcriptiona 38.0 90 0.0031 27.2 7.6 62 215-295 13-80 (301)
263 4gqa_A NAD binding oxidoreduct 37.7 49 0.0017 31.1 6.1 38 161-198 92-136 (412)
264 3i65_A Dihydroorotate dehydrog 37.4 1.5E+02 0.0053 28.5 9.6 21 154-175 285-305 (415)
265 3va7_A KLLA0E08119P; carboxyla 36.8 2E+02 0.0067 31.9 11.3 42 159-200 97-140 (1236)
266 3ot5_A UDP-N-acetylglucosamine 36.6 1.6E+02 0.0054 27.6 9.5 110 82-195 29-145 (403)
267 2gou_A Oxidoreductase, FMN-bin 36.4 1.6E+02 0.0054 27.6 9.4 41 154-194 252-299 (365)
268 1mzh_A Deoxyribose-phosphate a 36.4 85 0.0029 27.3 7.0 20 154-175 134-153 (225)
269 1vyr_A Pentaerythritol tetrani 36.3 2E+02 0.0068 26.9 10.1 41 154-194 253-300 (364)
270 2w6r_A Imidazole glycerol phos 36.2 82 0.0028 27.5 7.0 75 156-240 34-124 (266)
271 3ic5_A Putative saccharopine d 36.0 1.2E+02 0.0042 22.0 8.2 22 79-102 4-25 (118)
272 1eep_A Inosine 5'-monophosphat 36.0 2.6E+02 0.0089 26.2 11.0 51 158-208 158-217 (404)
273 2fqx_A Membrane lipoprotein TM 36.0 87 0.003 28.2 7.3 37 158-194 55-92 (318)
274 1f76_A Dihydroorotate dehydrog 35.5 1.2E+02 0.0041 27.7 8.3 22 154-175 227-248 (336)
275 1vim_A Hypothetical protein AF 34.9 78 0.0027 26.6 6.4 88 74-178 41-129 (200)
276 1ka9_F Imidazole glycerol phos 34.7 1.9E+02 0.0065 24.8 9.1 76 156-240 35-122 (252)
277 2r14_A Morphinone reductase; H 34.6 2.1E+02 0.0072 26.9 10.0 22 154-175 257-278 (377)
278 3ax6_A Phosphoribosylaminoimid 34.6 2.1E+02 0.0072 26.1 9.9 30 164-194 61-91 (380)
279 2r91_A 2-keto-3-deoxy-(6-phosp 34.6 56 0.0019 29.6 5.7 37 156-192 81-126 (286)
280 3vot_A L-amino acid ligase, BL 34.1 82 0.0028 29.6 7.0 45 145-192 58-102 (425)
281 3s5j_B Ribose-phosphate pyroph 33.8 24 0.0008 33.2 3.0 154 157-325 112-304 (326)
282 3vk5_A MOEO5; TIM barrel, tran 33.8 38 0.0013 31.3 4.3 38 155-193 56-101 (286)
283 3d6n_B Aspartate carbamoyltran 33.7 23 0.00078 32.8 2.9 84 154-245 79-177 (291)
284 4ab4_A Xenobiotic reductase B; 33.7 1.6E+02 0.0056 27.7 9.0 74 154-235 244-321 (362)
285 2h31_A Multifunctional protein 33.7 1.3E+02 0.0044 29.3 8.3 83 81-195 266-351 (425)
286 1qpz_A PURA, protein (purine n 33.0 2.3E+02 0.0078 25.1 9.6 30 214-245 57-93 (340)
287 3g8r_A Probable spore coat pol 33.0 1.7E+02 0.0057 27.7 8.8 74 218-297 92-174 (350)
288 3l21_A DHDPS, dihydrodipicolin 32.8 2.8E+02 0.0096 25.1 14.4 83 155-248 100-200 (304)
289 3llv_A Exopolyphosphatase-rela 32.8 1.7E+02 0.0057 22.5 9.8 41 79-125 5-45 (141)
290 3p9x_A Phosphoribosylglycinami 32.7 1.2E+02 0.0042 26.3 7.4 102 80-194 2-109 (211)
291 3nrs_A Dihydrofolate:folylpoly 32.5 3.2E+02 0.011 25.8 11.1 28 216-243 53-81 (437)
292 3n0v_A Formyltetrahydrofolate 32.3 1.9E+02 0.0066 26.2 8.9 101 80-194 90-194 (286)
293 2dwc_A PH0318, 433AA long hypo 32.3 1.2E+02 0.004 28.6 7.8 19 155-173 72-90 (433)
294 1l6s_A Porphobilinogen synthas 32.3 2.5E+02 0.0086 26.2 9.6 108 146-291 138-245 (323)
295 3nrb_A Formyltetrahydrofolate 32.0 1.3E+02 0.0045 27.4 7.8 102 79-194 87-193 (287)
296 3b0p_A TRNA-dihydrouridine syn 31.7 60 0.002 30.4 5.5 41 154-194 146-203 (350)
297 3gka_A N-ethylmaleimide reduct 31.4 2.1E+02 0.0073 26.8 9.3 74 154-235 252-329 (361)
298 2nuw_A 2-keto-3-deoxygluconate 31.3 61 0.0021 29.4 5.3 37 156-192 82-127 (288)
299 1m3s_A Hypothetical protein YC 31.3 1.6E+02 0.0054 23.9 7.6 88 74-178 31-119 (186)
300 2x5o_A UDP-N-acetylmuramoylala 31.2 1.5E+02 0.005 28.2 8.4 69 165-245 64-135 (439)
301 4h3v_A Oxidoreductase domain p 31.2 50 0.0017 30.2 4.8 38 161-198 71-115 (390)
302 2yvq_A Carbamoyl-phosphate syn 31.2 69 0.0024 25.9 5.2 22 218-245 51-72 (143)
303 1jub_A Dihydroorotate dehydrog 31.2 1.7E+02 0.0057 26.3 8.4 21 154-174 174-194 (311)
304 1rd5_A Tryptophan synthase alp 31.2 1.8E+02 0.0061 25.5 8.4 17 155-171 35-51 (262)
305 3ouz_A Biotin carboxylase; str 30.9 2.5E+02 0.0084 26.5 9.9 129 78-243 4-134 (446)
306 3hn7_A UDP-N-acetylmuramate-L- 30.8 73 0.0025 31.4 6.2 69 165-243 80-151 (524)
307 3lou_A Formyltetrahydrofolate 30.6 1.9E+02 0.0064 26.4 8.6 102 79-194 94-199 (292)
308 1oth_A Protein (ornithine tran 30.6 63 0.0022 30.2 5.4 83 154-245 91-184 (321)
309 3kux_A Putative oxidoreductase 30.4 1.3E+02 0.0046 27.4 7.7 24 77-101 4-27 (352)
310 4hf7_A Putative acylhydrolase; 30.4 1.3E+02 0.0043 25.0 7.0 69 88-172 57-125 (209)
311 3rxy_A NIF3 protein; structura 30.0 80 0.0027 29.0 5.7 80 215-296 195-278 (278)
312 2pjk_A 178AA long hypothetical 29.7 92 0.0031 26.2 5.9 30 215-244 15-57 (178)
313 1mio_B Nitrogenase molybdenum 29.6 2.8E+02 0.0095 26.6 10.1 26 80-105 169-194 (458)
314 3o9z_A Lipopolysaccaride biosy 29.6 2.1E+02 0.0072 25.7 8.8 31 145-177 54-84 (312)
315 3n9r_A Fructose-bisphosphate a 29.5 54 0.0019 30.5 4.7 24 157-180 160-183 (307)
316 3aty_A Tcoye, prostaglandin F2 29.5 2.7E+02 0.0092 26.2 9.8 39 154-193 268-312 (379)
317 2yxg_A DHDPS, dihydrodipicolin 29.4 76 0.0026 28.7 5.6 111 156-276 86-233 (289)
318 2vpq_A Acetyl-COA carboxylase; 29.3 2.6E+02 0.0088 26.3 9.7 38 160-197 68-107 (451)
319 3na8_A Putative dihydrodipicol 29.2 3.3E+02 0.011 24.8 15.3 110 155-274 109-257 (315)
320 1w1z_A Delta-aminolevulinic ac 29.2 3.2E+02 0.011 25.5 9.8 72 146-241 144-215 (328)
321 2ehh_A DHDPS, dihydrodipicolin 29.1 81 0.0028 28.6 5.8 42 151-192 81-130 (294)
322 3hcw_A Maltose operon transcri 29.1 2E+02 0.0067 24.9 8.3 32 214-245 6-47 (295)
323 3egc_A Putative ribose operon 29.0 1.3E+02 0.0046 25.8 7.1 61 214-295 7-74 (291)
324 4fxs_A Inosine-5'-monophosphat 28.9 78 0.0027 31.2 6.0 17 156-172 284-300 (496)
325 2vc6_A MOSA, dihydrodipicolina 28.8 81 0.0028 28.6 5.7 113 155-277 85-236 (292)
326 1ccw_A Protein (glutamate muta 28.6 2.2E+02 0.0074 22.5 7.8 71 158-248 47-120 (137)
327 3db2_A Putative NADPH-dependen 28.4 1.6E+02 0.0056 26.8 7.9 17 77-94 2-18 (354)
328 3flu_A DHDPS, dihydrodipicolin 28.3 85 0.0029 28.5 5.8 113 155-278 92-243 (297)
329 3rfq_A Pterin-4-alpha-carbinol 28.3 71 0.0024 27.3 4.9 29 216-244 31-66 (185)
330 3oa2_A WBPB; oxidoreductase, s 28.3 1.3E+02 0.0045 27.2 7.2 58 145-206 54-124 (318)
331 2ef0_A Ornithine carbamoyltran 28.1 59 0.002 30.1 4.7 83 154-245 90-183 (301)
332 1icp_A OPR1, 12-oxophytodienoa 28.1 2E+02 0.0068 27.1 8.5 40 154-193 258-306 (376)
333 3euw_A MYO-inositol dehydrogen 28.1 1.1E+02 0.0039 27.7 6.7 24 77-102 1-24 (344)
334 1pg5_A Aspartate carbamoyltran 27.8 65 0.0022 29.8 4.9 83 154-245 84-181 (299)
335 1o5k_A DHDPS, dihydrodipicolin 27.8 85 0.0029 28.7 5.7 42 151-192 93-142 (306)
336 1jvn_A Glutamine, bifunctional 27.7 2.3E+02 0.0078 28.2 9.3 38 156-193 456-501 (555)
337 1xky_A Dihydrodipicolinate syn 27.7 87 0.003 28.6 5.8 111 156-277 98-247 (301)
338 1w5q_A Delta-aminolevulinic ac 27.7 3.9E+02 0.013 25.1 11.1 67 146-236 149-215 (337)
339 2inf_A URO-D, UPD, uroporphyri 27.7 87 0.003 29.0 5.9 43 150-194 229-271 (359)
340 3tak_A DHDPS, dihydrodipicolin 27.6 86 0.0029 28.4 5.7 110 156-276 87-235 (291)
341 3d0c_A Dihydrodipicolinate syn 27.6 83 0.0028 28.9 5.6 37 156-192 97-141 (314)
342 1thf_D HISF protein; thermophI 27.5 2.9E+02 0.0099 23.6 9.4 52 156-207 155-218 (253)
343 3s5o_A 4-hydroxy-2-oxoglutarat 27.5 98 0.0033 28.3 6.1 111 156-277 100-252 (307)
344 1pv8_A Delta-aminolevulinic ac 27.5 3E+02 0.01 25.8 9.2 110 146-291 142-251 (330)
345 3oam_A 3-deoxy-manno-octuloson 27.3 2.9E+02 0.01 23.7 9.1 87 194-293 29-128 (252)
346 2rfg_A Dihydrodipicolinate syn 27.2 85 0.0029 28.6 5.6 42 151-192 81-130 (297)
347 1tv5_A Dhodehase, dihydroorota 27.2 82 0.0028 30.7 5.7 22 154-175 313-334 (443)
348 3cpr_A Dihydrodipicolinate syn 27.0 92 0.0031 28.4 5.8 42 151-192 97-146 (304)
349 3r2g_A Inosine 5'-monophosphat 26.8 1.6E+02 0.0053 27.9 7.5 53 156-208 103-164 (361)
350 3qze_A DHDPS, dihydrodipicolin 26.8 93 0.0032 28.6 5.8 112 155-277 108-258 (314)
351 3zwt_A Dihydroorotate dehydrog 26.8 85 0.0029 29.7 5.6 22 154-175 236-257 (367)
352 2hmt_A YUAA protein; RCK, KTN, 26.7 2E+02 0.0069 21.5 9.1 22 79-102 5-26 (144)
353 2i2w_A Phosphoheptose isomeras 26.6 2.4E+02 0.0081 23.6 8.1 24 155-178 148-171 (212)
354 2r8w_A AGR_C_1641P; APC7498, d 26.5 85 0.0029 29.2 5.5 37 156-192 120-164 (332)
355 3m2t_A Probable dehydrogenase; 26.4 1.3E+02 0.0044 27.7 6.8 22 80-102 5-26 (359)
356 3o1l_A Formyltetrahydrofolate 26.3 2.7E+02 0.0092 25.5 8.9 102 79-194 104-209 (302)
357 3flu_A DHDPS, dihydrodipicolin 26.1 2.6E+02 0.0087 25.2 8.7 31 144-178 24-54 (297)
358 3eb2_A Putative dihydrodipicol 26.1 82 0.0028 28.7 5.3 110 155-275 89-237 (300)
359 2yva_A DNAA initiator-associat 26.1 2.4E+02 0.0083 23.0 8.0 24 155-178 126-149 (196)
360 3glc_A Aldolase LSRF; TIM barr 26.1 3.6E+02 0.012 24.6 9.6 17 277-293 242-258 (295)
361 1ypf_A GMP reductase; GUAC, pu 26.0 72 0.0025 29.5 4.9 61 156-226 161-243 (336)
362 4avf_A Inosine-5'-monophosphat 25.9 1.1E+02 0.0039 29.9 6.6 16 156-171 282-297 (490)
363 2eja_A URO-D, UPD, uroporphyri 25.9 95 0.0032 28.4 5.7 15 82-98 133-147 (338)
364 4avf_A Inosine-5'-monophosphat 25.9 1.5E+02 0.0052 29.0 7.5 53 156-208 232-293 (490)
365 3q2i_A Dehydrogenase; rossmann 25.6 3.5E+02 0.012 24.4 9.7 22 79-102 12-33 (354)
366 3daq_A DHDPS, dihydrodipicolin 25.6 81 0.0028 28.6 5.1 116 156-282 88-244 (292)
367 2v9d_A YAGE; dihydrodipicolini 25.5 95 0.0033 29.0 5.7 42 151-192 112-161 (343)
368 1w3i_A EDA, 2-keto-3-deoxy glu 25.5 73 0.0025 28.9 4.8 37 156-192 82-127 (293)
369 3kc2_A Uncharacterized protein 25.4 88 0.003 29.2 5.5 75 155-245 35-117 (352)
370 3kcq_A Phosphoribosylglycinami 25.4 1.8E+02 0.0061 25.3 7.1 100 77-194 5-110 (215)
371 2qjg_A Putative aldolase MJ040 25.4 3.3E+02 0.011 23.6 10.1 107 158-292 105-237 (273)
372 3iz5_f 60S ribosomal protein L 25.4 1.1E+02 0.0039 23.8 5.3 39 156-194 33-74 (112)
373 2l82_A Designed protein OR32; 25.3 2.5E+02 0.0087 22.2 8.1 86 194-291 14-109 (162)
374 3p9z_A Uroporphyrinogen III co 25.1 46 0.0016 28.8 3.2 82 159-252 127-215 (229)
375 1ujp_A Tryptophan synthase alp 25.0 3.1E+02 0.011 24.5 8.9 55 180-244 83-148 (271)
376 3nav_A Tryptophan synthase alp 25.0 3.8E+02 0.013 24.0 16.6 61 85-175 75-135 (271)
377 2isw_A Putative fructose-1,6-b 24.9 1E+02 0.0035 28.8 5.7 24 157-180 158-181 (323)
378 3kjx_A Transcriptional regulat 24.7 3.6E+02 0.012 23.8 9.4 43 201-245 48-103 (344)
379 1f6k_A N-acetylneuraminate lya 24.6 88 0.003 28.3 5.2 42 151-192 85-134 (293)
380 2ftp_A Hydroxymethylglutaryl-C 24.6 3.8E+02 0.013 24.0 11.7 23 272-294 159-181 (302)
381 2e6f_A Dihydroorotate dehydrog 24.6 2E+02 0.0067 25.9 7.6 22 154-175 176-198 (314)
382 1ml4_A Aspartate transcarbamoy 24.4 65 0.0022 29.9 4.2 86 154-247 90-188 (308)
383 1jeo_A MJ1247, hypothetical pr 24.3 1.7E+02 0.0059 23.5 6.6 86 75-177 35-121 (180)
384 1js1_X Transcarbamylase; alpha 24.2 84 0.0029 29.4 5.0 87 154-247 93-203 (324)
385 3uuw_A Putative oxidoreductase 24.2 3E+02 0.01 24.3 8.7 21 80-101 6-26 (308)
386 3obi_A Formyltetrahydrofolate 24.2 2.2E+02 0.0074 25.9 7.7 102 79-194 88-194 (288)
387 1jvn_A Glutamine, bifunctional 24.1 1.5E+02 0.0051 29.5 7.1 77 155-240 283-398 (555)
388 3vnd_A TSA, tryptophan synthas 24.1 3.9E+02 0.013 23.9 10.1 60 86-175 74-133 (267)
389 1xky_A Dihydrodipicolinate syn 24.0 2.9E+02 0.01 24.9 8.6 31 144-178 29-59 (301)
390 1q77_A Hypothetical protein AQ 23.7 66 0.0023 24.5 3.6 33 159-192 103-135 (138)
391 4gj1_A 1-(5-phosphoribosyl)-5- 23.6 1.9E+02 0.0065 25.3 7.1 76 157-242 36-124 (243)
392 4dgk_A Phytoene dehydrogenase; 23.6 26 0.0009 33.5 1.4 22 80-101 1-23 (501)
393 3l21_A DHDPS, dihydrodipicolin 23.6 2.5E+02 0.0086 25.4 8.1 31 144-178 32-62 (304)
394 3eph_A TRNA isopentenyltransfe 23.3 74 0.0025 30.8 4.5 80 217-297 4-103 (409)
395 1r3s_A URO-D, uroporphyrinogen 23.0 1.4E+02 0.0049 27.7 6.4 45 149-195 232-283 (367)
396 3k8d_A 3-deoxy-manno-octuloson 23.0 3.9E+02 0.013 23.5 9.6 114 164-293 17-144 (264)
397 3tak_A DHDPS, dihydrodipicolin 22.9 2.8E+02 0.0097 24.8 8.3 31 144-178 18-48 (291)
398 3p9z_A Uroporphyrinogen III co 22.9 90 0.0031 26.9 4.7 77 166-244 38-137 (229)
399 3m5v_A DHDPS, dihydrodipicolin 22.8 2.6E+02 0.0087 25.3 8.0 31 144-178 24-54 (301)
400 3v7e_A Ribosome-associated pro 22.7 79 0.0027 23.1 3.6 40 156-195 18-60 (82)
401 4dnh_A Uncharacterized protein 22.7 4.7E+02 0.016 24.7 9.6 116 88-245 58-188 (396)
402 1ulz_A Pyruvate carboxylase N- 22.6 4.7E+02 0.016 24.4 10.4 119 79-243 1-129 (451)
403 3daq_A DHDPS, dihydrodipicolin 22.5 2.6E+02 0.0088 25.2 7.9 32 144-179 19-50 (292)
404 3pzy_A MOG; ssgcid, seattle st 22.5 1.1E+02 0.0039 25.2 5.1 29 216-244 8-44 (164)
405 3doj_A AT3G25530, dehydrogenas 22.5 3.7E+02 0.013 23.9 9.0 32 79-117 20-51 (310)
406 2yv4_A Hypothetical protein PH 22.3 1.4E+02 0.0046 22.9 5.1 44 145-188 52-99 (105)
407 3b4u_A Dihydrodipicolinate syn 22.3 1E+02 0.0035 27.9 5.1 42 151-192 84-137 (294)
408 2ojp_A DHDPS, dihydrodipicolin 22.3 81 0.0028 28.6 4.4 42 151-192 82-131 (292)
409 3v7q_A Probable ribosomal prot 22.2 1.6E+02 0.0054 22.2 5.4 40 156-195 26-68 (101)
410 3m5v_A DHDPS, dihydrodipicolin 22.2 4.3E+02 0.015 23.7 15.5 112 155-276 93-242 (301)
411 4es6_A Uroporphyrinogen-III sy 22.2 1.1E+02 0.0039 26.4 5.3 18 159-176 150-167 (254)
412 3j21_Z 50S ribosomal protein L 22.1 1.8E+02 0.0062 21.7 5.8 39 156-194 22-63 (99)
413 1yxy_A Putative N-acetylmannos 22.0 2.4E+02 0.0081 24.0 7.3 36 155-193 39-74 (234)
414 3qha_A Putative oxidoreductase 22.0 1.5E+02 0.0052 26.4 6.2 18 77-95 12-29 (296)
415 3trj_A Phosphoheptose isomeras 21.9 2.7E+02 0.0093 23.3 7.5 42 79-120 45-89 (201)
416 3hs3_A Ribose operon repressor 21.9 3.7E+02 0.013 22.8 9.8 59 214-293 9-75 (277)
417 3na8_A Putative dihydrodipicol 21.8 2.5E+02 0.0084 25.7 7.7 31 144-178 41-71 (315)
418 2hmc_A AGR_L_411P, dihydrodipi 21.7 1.2E+02 0.004 28.4 5.5 47 156-202 109-174 (344)
419 3a5f_A Dihydrodipicolinate syn 21.7 3E+02 0.01 24.6 8.2 30 145-178 19-48 (291)
420 3av3_A Phosphoribosylglycinami 21.5 2E+02 0.007 24.7 6.7 103 80-194 3-110 (212)
421 1qv9_A F420-dependent methylen 21.5 2.8E+02 0.0095 25.1 7.5 37 80-117 3-39 (283)
422 3qze_A DHDPS, dihydrodipicolin 21.5 2.9E+02 0.0099 25.2 8.1 31 144-178 40-70 (314)
423 2a3n_A Putative glucosamine-fr 21.5 2.1E+02 0.0072 26.3 7.2 89 75-176 47-140 (355)
424 2wkj_A N-acetylneuraminate lya 21.4 1.1E+02 0.0037 27.9 5.1 37 156-192 97-142 (303)
425 3lq1_A 2-succinyl-5-enolpyruvy 21.2 1.6E+02 0.0055 29.1 6.7 89 152-244 12-104 (578)
426 3knz_A Putative sugar binding 21.2 2E+02 0.0067 26.9 7.0 24 155-178 114-137 (366)
427 2r8w_A AGR_C_1641P; APC7498, d 21.1 3.1E+02 0.011 25.2 8.3 31 144-178 51-81 (332)
428 3etn_A Putative phosphosugar i 21.0 1.2E+02 0.0041 25.9 5.1 91 74-179 48-149 (220)
429 2wkj_A N-acetylneuraminate lya 21.0 3.1E+02 0.011 24.8 8.2 31 144-178 28-58 (303)
430 1k7c_A Rhamnogalacturonan acet 21.0 2E+02 0.0069 24.3 6.6 25 149-173 109-133 (233)
431 4a18_G RPL30; ribosome, eukary 21.0 1.3E+02 0.0044 22.9 4.7 38 156-193 29-69 (104)
432 3k4h_A Putative transcriptiona 20.9 3.1E+02 0.011 23.2 8.0 32 214-245 7-48 (292)
433 3ia7_A CALG4; glycosysltransfe 20.7 4.3E+02 0.015 23.5 9.2 40 155-195 92-131 (402)
434 2f6u_A GGGPS, (S)-3-O-geranylg 20.5 89 0.003 27.7 4.2 36 158-194 26-67 (234)
435 3si9_A DHDPS, dihydrodipicolin 20.5 3.2E+02 0.011 24.9 8.2 31 144-178 39-69 (315)
436 1twd_A Copper homeostasis prot 20.4 1.3E+02 0.0044 27.3 5.2 68 86-179 33-100 (256)
437 3qfe_A Putative dihydrodipicol 20.4 2.6E+02 0.0087 25.6 7.5 31 144-178 28-58 (318)
438 1duv_G Octase-1, ornithine tra 20.3 82 0.0028 29.5 4.0 85 154-246 89-186 (333)
439 3a5f_A Dihydrodipicolinate syn 20.3 76 0.0026 28.7 3.8 37 156-192 87-131 (291)
440 3dz1_A Dihydrodipicolinate syn 20.3 2.8E+02 0.0096 25.2 7.7 31 144-178 25-55 (313)
441 3e96_A Dihydrodipicolinate syn 20.3 1.1E+02 0.0038 28.0 4.9 112 155-277 96-245 (316)
442 1ep3_A Dihydroorotate dehydrog 20.3 2.1E+02 0.0073 25.3 6.9 22 154-175 113-135 (311)
443 2gl5_A Putative dehydratase pr 20.3 1.8E+02 0.0063 27.3 6.6 38 156-193 236-274 (410)
444 3fkr_A L-2-keto-3-deoxyarabona 20.3 2.9E+02 0.0099 25.1 7.8 31 144-178 25-55 (309)
445 3re1_A Uroporphyrinogen-III sy 20.2 92 0.0032 27.5 4.3 18 159-176 158-175 (269)
446 2yxg_A DHDPS, dihydrodipicolin 20.1 3.2E+02 0.011 24.4 8.0 30 145-178 18-47 (289)
447 3rjt_A Lipolytic protein G-D-S 20.1 2.4E+02 0.0083 22.5 6.7 76 88-172 62-137 (216)
448 2pn1_A Carbamoylphosphate synt 20.0 3.7E+02 0.013 23.7 8.5 37 159-196 66-106 (331)
449 2xzm_U Ribosomal protein L7AE 20.0 1.9E+02 0.0064 23.0 5.6 40 155-194 30-73 (126)
No 1
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=100.00 E-value=2.6e-51 Score=376.98 Aligned_cols=223 Identities=22% Similarity=0.347 Sum_probs=191.7
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhcc--C-CCCC-EEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGE--E-NDFP-FLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~--d-~~~~-~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
||+|||||||||+||++||++|++.+++ + +|.| ++++| +.+++..- + ...++|+++.+++.
T Consensus 2 mk~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s-~~~~~~~~--------~------~~~~~~~~~~~~l~ 66 (231)
T 3ojc_A 2 MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYS-VDFHEIEQ--------L------QAKGDWQTAAQLLS 66 (231)
T ss_dssp CCCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEE-CCHHHHHH--------H------HHTTCHHHHHHHHH
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeC-CChhhHHH--------H------HHCCChhHHHHHHH
Confidence 8999999999999999999999999996 3 6755 55555 44554210 0 02468999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK 235 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~ 235 (332)
+.+++|+++|||+|+|||||+|++++++++.+++||+||++++++++++.+.+ |||||||++|+++++|++.
T Consensus 67 ~~~~~L~~~g~~~iviaCNTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~~~~--------rVgvLaT~~T~~s~~y~~~ 138 (231)
T 3ojc_A 67 NAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGID--------KIGLLGTRYTMEQGFYRGR 138 (231)
T ss_dssp HHHHHHHHHTCCEEEECSSGGGGGHHHHHHHHCSCBCCHHHHHHHHHHHTTCC--------EEEEESCHHHHHSTTTHHH
T ss_pred HHHHHHHhcCCCEEEEeCCchHHHHHHHHHhCCCCEeccHHHHHHHHHHcCCC--------EEEEEcCHHHhhchHHHHH
Confidence 99999999999999999999999999999999999999999999999876543 9999999999999999999
Q ss_pred HHhc-CCeEEecCccchhhchHHHH-HHHhcCCh-HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCceec
Q 020005 236 LQHE-GFEVVLPDKATMEHTLIPAL-DALNRKDV-EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDPLLKKCID 312 (332)
Q Consensus 236 l~~~-Gi~vv~P~~~~q~~~l~~~i-~~ik~g~~-~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~~~ipvID 312 (332)
++++ |++++.|+++.|+. +...| ++++.|.. +.+++.+.++++.|.++|+|+|||||||||++.+..+ .++|+||
T Consensus 139 l~~~~g~~v~~p~~~~~~~-v~~~I~~~~~~g~~~~~~~~~~~~~~~~l~~~g~d~vILGCTe~pll~~~~~-~~v~viD 216 (231)
T 3ojc_A 139 LTEKHGIEVITPDDTDREA-VNRIIYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQD-ASVPVFD 216 (231)
T ss_dssp HHHTTCCEEECCCHHHHHH-HHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHTTCSCEEECSGGGGGTCCGGG-CSSCEEE
T ss_pred HHhcCCCEEEecCHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHhccccc-CCCcEEc
Confidence 9999 99999998876753 34334 46888887 5578899999999999999999999999999997765 3579999
Q ss_pred hHHHHHHHHHHHHHh
Q 020005 313 PMDALARSTIKWVKS 327 (332)
Q Consensus 313 ~~~~lA~a~v~~a~~ 327 (332)
|++++|+++++||+.
T Consensus 217 s~~~~A~~~v~~a~~ 231 (231)
T 3ojc_A 217 TTAIHASAAADYALQ 231 (231)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhC
Confidence 999999999999863
No 2
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=100.00 E-value=3.2e-50 Score=377.41 Aligned_cols=222 Identities=28% Similarity=0.530 Sum_probs=195.4
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhcc--C-CCCCEEEecCCcchhh---hhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGE--E-NDFPFLLCSDPLLNKE---LLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~--d-~~~~~vi~s~p~ip~~---ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
.||+|||||||||+||++|||+|++.+++ | +|+|++++|+|+++++ +..++.+|.+.
T Consensus 25 m~k~IGiiGGmg~~aT~~~~~~i~~~~~~~~D~~h~p~~~~s~~~i~~r~~~~~~~g~~~~~~----------------- 87 (268)
T 3s81_A 25 MKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRY----------------- 87 (268)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHSCCSSGGGSCCEEEEECTTSCCHHHHHHHCCCCSHHH-----------------
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHhhHhhcCCCCCCEEEeccCCHHHHHHHHHhCCchHHHH-----------------
Confidence 47899999999999999999999999996 4 8999999999999875 45555555443
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhH
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFY 232 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY 232 (332)
+.+.+++|+++|||+|||||||+|.|++++++.+++|||||+++++++++ .+. +|||||||++|+++++|
T Consensus 88 -l~~~~~~L~~~Gad~IVIaCNTah~~l~~lr~~~~iPvigiiea~~~aa~-~~~--------~rVgVLaT~~T~~s~~y 157 (268)
T 3s81_A 88 -LERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIP-PSA--------RHVGLLATNATLATGLY 157 (268)
T ss_dssp -HHHHHHHHHHTTCSEEECSCSGGGGGHHHHHHHCSSEEECHHHHHHHTSC-TTC--------CEEEEECCHHHHHTTTT
T ss_pred -HHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHCCCCEEcccHHHHHHHH-hcC--------CcEEEEechHHhhHHHH
Confidence 56778999999999999999999999999999999999999999988776 433 49999999999999999
Q ss_pred HHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCC-CCCCCcee
Q 020005 233 QEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPD-DPLLKKCI 311 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~-~~~~ipvI 311 (332)
++.++++|+++++|+.++|+. ++..|+.++.|+.+..++.+.++++.|.++|+|+|||||||||++.+.. ...++|+|
T Consensus 158 ~~~l~~~g~~~~v~~~~~~~~-v~~~I~~ve~g~~~~~~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~vi 236 (268)
T 3s81_A 158 QKKALARGLTLIQPEDAGQAL-VMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMI 236 (268)
T ss_dssp HHHHHHHTCEEECCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEE
T ss_pred HHHHHHcCCceEecCcccHHH-HHHHHHHHHcCCchhHHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEE
Confidence 999999999999999887753 5556789999998777889999999999999999999999999998763 33468999
Q ss_pred chHHHHHHHHHHHHHhh
Q 020005 312 DPMDALARSTIKWVKSA 328 (332)
Q Consensus 312 D~~~~lA~a~v~~a~~~ 328 (332)
||++++|+++++++.+.
T Consensus 237 Ds~~~~A~~~~~~l~~~ 253 (268)
T 3s81_A 237 DSTASLVRAAIRWYESW 253 (268)
T ss_dssp EHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999999999998765
No 3
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=100.00 E-value=1.8e-48 Score=356.06 Aligned_cols=223 Identities=23% Similarity=0.394 Sum_probs=193.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhcc--C-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGE--E-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~--d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
||+|||||||||+||++||++|++.+++ | +|+|++++|+|+++++.... ..+|+...+.+.+
T Consensus 1 m~~iGiiGGmg~~at~~~~~~i~~~~~~~~d~~~~~~~~~~~~~i~~r~~~~---------------~~~~~~~~~~l~~ 65 (228)
T 1jfl_A 1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYI---------------LGKGEDPRPQLIW 65 (228)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHH---------------TTSSCCCHHHHHH
T ss_pred CCeEEEecccCHHHHHHHHHHHHHHHHhhcCCccCcEeEEeCCCHHHHHHHH---------------HcCCchHHHHHHH
Confidence 7899999999999999999999999986 4 89999999999998862210 0124445566788
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
.+++|++.|+|+|+|||||+|++++++++.+++||+||++++++.+.+.+. +|||||||++|+++++|++.+
T Consensus 66 ~~~~l~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~~~--------~rigvlaT~~T~~~~~y~~~l 137 (228)
T 1jfl_A 66 TAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGF--------KKAGLLATTGTIVSGVYEKEF 137 (228)
T ss_dssp HHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTTC--------SEEEEECCHHHHHHTHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCC--------CeEEEEecHHHhhhhHHHHHH
Confidence 899999999999999999999999999999999999999999999876543 399999999999999999999
Q ss_pred HhcCCeEEecCccchhhchHHHHH-HHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCCCCCCceechHH
Q 020005 237 QHEGFEVVLPDKATMEHTLIPALD-ALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDDPLLKKCIDPMD 315 (332)
Q Consensus 237 ~~~Gi~vv~P~~~~q~~~l~~~i~-~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~~~~ipvID~~~ 315 (332)
+++|++++.|+.+.|+. +.+.++ +++.|+.+..++.+.++++.|.++|+|+|||||||||++.+..+ .++|+|||++
T Consensus 138 ~~~g~~v~~~~~~~~~~-~~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~~ 215 (228)
T 1jfl_A 138 SKYGVEIMTPTEDEQKD-VMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMD 215 (228)
T ss_dssp HHTTCEEECCCHHHHHH-HHHHHHTTGGGTCHHHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG-CSSCEECHHH
T ss_pred HHCCCeEEccCHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHCCcCEEEECCCChHhhhhhhc-CCCCEEChHH
Confidence 99999999998776653 455555 78889876678899999999988999999999999999987655 4579999999
Q ss_pred HHHHHHHHHHHh
Q 020005 316 ALARSTIKWVKS 327 (332)
Q Consensus 316 ~lA~a~v~~a~~ 327 (332)
++|+++++++++
T Consensus 216 ~~a~~~~~~a~~ 227 (228)
T 1jfl_A 216 VIAEVAVKVALE 227 (228)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 4
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.9e-48 Score=351.54 Aligned_cols=220 Identities=22% Similarity=0.337 Sum_probs=191.9
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhcc--C-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGE--E-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~--d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
||+|||||||||+||++||++|++.+++ + +|.+.+++++|++|++ .. ...+|+.+.+.+.+
T Consensus 1 m~~iGiiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~-~~---------------~~~~~~~~~~~l~~ 64 (226)
T 2zsk_A 1 MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEF-FQ---------------NPEGWEGRKKILIN 64 (226)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHH-HT---------------CTTHHHHHHHHHHH
T ss_pred CCeEEEecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCHHHH-Hh---------------hcCCcchHHHHHHH
Confidence 6799999999999999999999999985 4 7888888888888876 21 01248889999999
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
.+++|++.|+|+|+|||||+|.+++++++.+++||+||+++++++++..+. +|||||||++|+++++|++.+
T Consensus 65 ~~~~L~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~a~~~~~~~~~~--------~rigvlaT~~T~~~~~y~~~l 136 (226)
T 2zsk_A 65 AAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGV--------RKVLLLGTKTTMTADFYIKTL 136 (226)
T ss_dssp HHHHHHHHTCSEEEESSSGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTTC--------CEEEEESSTTTTSCHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCcHHHHHHHHHHhCCCCEeccHHHHHHHHHHcCC--------CeEEEEeCHHHHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999877543 399999999999999999999
Q ss_pred HhcCCeEEecCccchhhchHHHHH-HHhcCChHHHHHHHHHHHHHHHh-CCCCEEEECCCCcccCCCCCCCCCCceechH
Q 020005 237 QHEGFEVVLPDKATMEHTLIPALD-ALNRKDVEGARNLLRIALQVLLV-RAVNTVILASDDMQDLLPPDDPLLKKCIDPM 314 (332)
Q Consensus 237 ~~~Gi~vv~P~~~~q~~~l~~~i~-~ik~g~~~~a~~~l~~~~~~L~~-~gad~VILGCTElpli~~~~~~~~ipvID~~ 314 (332)
+++|++++.|+.+.|+. +.+.++ +++.|+.+ .++.+.++++.|.+ +|+|+|||||||||++.+..+ .++|+|||+
T Consensus 137 ~~~g~~v~~~~~~~~~~-v~~~i~~~~~~g~~~-~~~~l~~~~~~l~~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~ 213 (226)
T 2zsk_A 137 EEKGLEVVVPNDEEKEE-LNRIIFEELAFGNLK-NKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGD-VSVEVFDSA 213 (226)
T ss_dssp HTTTCEEECCCHHHHHH-HHHHHHHTGGGTCCT-THHHHHHHHHHHHHHSCCSEEEECSSSGGGTCCGGG-SSSEEEEHH
T ss_pred HHCCCEEEccCHHHHHH-HHHHHHHHHHcCchh-HHHHHHHHHHHHHhhcCCCEEEECCCCHHHHhhccC-CCCcEEChH
Confidence 99999999998876653 444454 58888876 67888999999988 899999999999999976653 358999999
Q ss_pred HHHHHHHHHHHH
Q 020005 315 DALARSTIKWVK 326 (332)
Q Consensus 315 ~~lA~a~v~~a~ 326 (332)
+++|++++++++
T Consensus 214 ~~~a~~~~~~a~ 225 (226)
T 2zsk_A 214 EIHMRKLIELAS 225 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 5
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=100.00 E-value=1.7e-34 Score=273.37 Aligned_cols=217 Identities=15% Similarity=0.204 Sum_probs=173.9
Q ss_pred CcchhhhccCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHH
Q 020005 72 CSDALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI 150 (332)
Q Consensus 72 ~~~~~~~~~k~IGIi-GGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i 150 (332)
-++++|+..++|||+ ||||++ .+|++|.+.++.. . ++-+.| ....|+. ..+|+++
T Consensus 16 ~~~~~~~~~~~IGvfDsG~Ggl---tv~~~i~~~~P~~-~--~iy~~D-----------~~~~pyG-------~~s~~~i 71 (290)
T 2vvt_A 16 PRGSHMSNQEAIGLIDSGVGGL---TVLKEALKQLPNE-R--LIYLGD-----------TARCPYG-------PRPAEQV 71 (290)
T ss_dssp TTSSCCGGGSCEEEEESSSTTH---HHHHHHHHHCTTS-C--EEEEEC-----------TTTCCCT-------TSCHHHH
T ss_pred CCCccccCCCcEEEEeCCCcHH---HHHHHHHHHCCCc-c--EEEecc-----------cccCCCC-------CCCHHHH
Confidence 356777656799999 999984 4999999998765 1 222121 1123331 4578899
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
.+++.+.+++|++.|||+|+|||||+| ++++++++.+++||++|++++++.+.+.. .++|||||||++|+++
T Consensus 72 ~~~~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~-------~~~rIgVLaT~~T~~s 144 (290)
T 2vvt_A 72 VQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVT-------KNNKIGVIGTLGTIKS 144 (290)
T ss_dssp HHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSHHHHHHHHHHC-------SSSEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccHHHHHHHHHhc-------CCCEEEEEeCcHhhhh
Confidence 999999999999999999999999999 56999999999999999999998887531 2349999999999999
Q ss_pred hhHHHHHHhc--CCeEE-ecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC
Q 020005 230 GFYQEKLQHE--GFEVV-LPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD 304 (332)
Q Consensus 230 ~lY~~~l~~~--Gi~vv-~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~ 304 (332)
++|++.++++ +++++ .+... + ++.++.|+. +..++.+.++++.|.++|+|+|||||||||++.+...
T Consensus 145 ~~y~~~l~~~~~~~~v~~~~~~~-----l---v~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~p~l~~~i~ 216 (290)
T 2vvt_A 145 ASYEIAIKSKAPAIEVTSLACPK-----F---VPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQ 216 (290)
T ss_dssp THHHHHHHTTCTTSEEEEEECTT-----H---HHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHH
T ss_pred HHHHHHHHHhCCCCEEEeccCHH-----H---HHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCHHHHHHHHH
Confidence 9999999998 56665 34322 3 467788876 4577888999999888899999999999999876542
Q ss_pred ---CCCCceechHHHHHHHHHHHHHh
Q 020005 305 ---PLLKKCIDPMDALARSTIKWVKS 327 (332)
Q Consensus 305 ---~~~ipvID~~~~lA~a~v~~a~~ 327 (332)
+..+|+|||.+++|++++++...
T Consensus 217 ~~l~~~vpvIDs~~a~a~~~~~~l~~ 242 (290)
T 2vvt_A 217 NVMGSHVTLIDSGAETVGEVSMLLDY 242 (290)
T ss_dssp HHHCTTCEEEEHHHHHHHHHHHHHHH
T ss_pred HHcCCCCeEECcHHHHHHHHHHHHHh
Confidence 33589999999999999998864
No 6
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=100.00 E-value=1.2e-34 Score=271.60 Aligned_cols=213 Identities=13% Similarity=0.140 Sum_probs=171.1
Q ss_pred hhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 77 LNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 77 ~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
|+..+.|||+. |+|.++ .++.|.+..+. -+++-+.|. ..+||. ..+|+++.+++.
T Consensus 4 ~~~~~pIgvfDSGvGGLt---v~~~i~~~lp~---~~~iy~~D~-----------a~~PYG-------~~~~~~i~~~~~ 59 (268)
T 3out_A 4 MLDNRPIGVFDSGIGGLT---IVKNLMSILPN---EDIIYFGDI-----------ARIPYG-------TKSRATIQKFAA 59 (268)
T ss_dssp -CTTSCEEEEESSSTTHH---HHHHHHHHCTT---CCEEEEECT-----------TTCCCT-------TSCHHHHHHHHH
T ss_pred cCCCCcEEEEECCCChHH---HHHHHHHHCCC---CcEEEecCC-----------CCCCCC-------CCCHHHHHHHHH
Confidence 55567899999 999999 56666655543 234433321 234442 578999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-hHHHHhhhC-CCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGC-SVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~-~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~ 233 (332)
+.+++|+++|||+|||||||+|. +++++++.+ ++|||||++++++. .. .++|||||||++|+++++|+
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigiiep~~~~--~~--------~~~~IGVLaT~~Ti~s~~y~ 129 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVSL--VD--------NLNTVGVIATPATINSNAYA 129 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEHHHHHHHT--TT--------TCSEEEEEECHHHHHHTHHH
T ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEeccHHHHHH--hc--------cCCeEEEEecCcccccHHHH
Confidence 99999999999999999999998 579999999 99999999999887 22 23599999999999999999
Q ss_pred HHHHhcCCeEEecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCC-CCCCCce
Q 020005 234 EKLQHEGFEVVLPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPD-DPLLKKC 310 (332)
Q Consensus 234 ~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~-~~~~ipv 310 (332)
+.++++|.++.++..+++. + +..++.|.. +.+++.+.++++.|.++|+|+|||||||||++.+.. +...+++
T Consensus 130 ~~l~~~~~~~~V~~~~~~~--l---V~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~v 204 (268)
T 3out_A 130 LQIHKKNPNIEVYSNPCGL--F---VSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKL 204 (268)
T ss_dssp HHHHHHCTTSEEEEEECTT--H---HHHHHTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEE
T ss_pred HHHHHhCCCCEEecCCChH--H---HHHHHcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCChHHHHHHHhcCCCCce
Confidence 9999998766665544443 3 456778876 457888999999999899999999999999997653 1345899
Q ss_pred echHHHHHHHHHHHHHhh
Q 020005 311 IDPMDALARSTIKWVKSA 328 (332)
Q Consensus 311 ID~~~~lA~a~v~~a~~~ 328 (332)
|||++++|++++++....
T Consensus 205 iD~~~~~a~~~~~~l~~~ 222 (268)
T 3out_A 205 IDPSLQASKMLYSLLFEN 222 (268)
T ss_dssp ECCHHHHHHHHHHHHHHT
T ss_pred echHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 7
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=100.00 E-value=3.8e-34 Score=268.53 Aligned_cols=214 Identities=16% Similarity=0.189 Sum_probs=169.6
Q ss_pred chhhhccCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIi-GGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
+++|+..++|||+ ||||++ .++++|.+.++.. .++.+.|.. ..|+. ..+++++.+
T Consensus 6 ~~~~~~~~~IGv~DsG~Ggl---tv~~~i~~~~P~~---~~iy~~D~~-----------~~Pyg-------~~s~~~i~~ 61 (273)
T 2oho_A 6 GSHMMDTRPIGFLDSGVGGL---TVVCELIRQLPHE---KIVYIGDSA-----------RAPYG-------PRPKKQIKE 61 (273)
T ss_dssp SSCBCCCCCEEEEESSSTTH---HHHHHHHHHCTTC---CEEEEECGG-----------GCCCT-------TSCHHHHHH
T ss_pred cccccCCCcEEEEeCCCcHH---HHHHHHHHHCCCC---CEEEEeCCC-----------CCCCC-------CCCHHHHHH
Confidence 4555445689999 999984 4999999998754 244434332 12321 356788999
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhh
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF 231 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~l 231 (332)
++.+.+++|++.|||+|+|||||+|. +++++++.+++||++|++++++.+.+.. ..+|||||||++|+++++
T Consensus 62 ~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~epa~~~A~~~~-------~~~rIgVlaT~~T~~~~~ 134 (273)
T 2oho_A 62 YTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKST-------TKGQVGVIGTPMTVASDI 134 (273)
T ss_dssp HHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHHTH
T ss_pred HHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEeccHHHHHHHHHhc-------CCCeEEEEECchhhcchH
Confidence 99999999999999999999999995 4899999999999999999998877641 234999999999999999
Q ss_pred HHHHHHhc--CCeEEe-cCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC--
Q 020005 232 YQEKLQHE--GFEVVL-PDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD-- 304 (332)
Q Consensus 232 Y~~~l~~~--Gi~vv~-P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~-- 304 (332)
|++.++++ |++++. |++. + .+.++.|.. +..++.+.++++.+.++ +|+|||||||||++.+...
T Consensus 135 y~~~l~~~~~g~~v~~~~~~~-----~---v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh~p~l~~~i~~~ 205 (273)
T 2oho_A 135 YRKKIQLLAPSIQVRSLACPK-----F---VPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTHYPLLRPIIQNV 205 (273)
T ss_dssp HHHHHHHHCTTSEEEEEECTT-----H---HHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTTGGGGHHHHHHH
T ss_pred HHHHHHHhCCCCEEEecCCHH-----H---HHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCCHHHHHHHHHHH
Confidence 99999998 999874 6543 2 345677876 34678888999888877 9999999999999876531
Q ss_pred -CCCCceechHHHHHHHHHHHHHh
Q 020005 305 -PLLKKCIDPMDALARSTIKWVKS 327 (332)
Q Consensus 305 -~~~ipvID~~~~lA~a~v~~a~~ 327 (332)
+..+|+|||.+++|++++++...
T Consensus 206 ~~~~vpviDs~~~~a~~~~~~l~~ 229 (273)
T 2oho_A 206 MGPSVKLIDSGAECVRDISVLLNY 229 (273)
T ss_dssp HCTTSEEEEHHHHHHHHHHHHHHH
T ss_pred hCCCCEEECcHHHHHHHHHHHHHh
Confidence 23579999999999999998754
No 8
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=100.00 E-value=9.4e-34 Score=265.73 Aligned_cols=213 Identities=15% Similarity=0.162 Sum_probs=169.6
Q ss_pred cCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
.+.|||+. |+|.++ .++.|.+..+.. ++-++-++ ..+||. ....+++.+++.+.+
T Consensus 5 ~~~IgvfDSGvGGlt---v~~~i~~~lP~~-~~iy~~D~-------------a~~PYG-------~ks~~~i~~~~~~~~ 60 (269)
T 3ist_A 5 KQAIGFIDSGVGGLT---VVREVLKQLPHE-QVYYLGDT-------------ARCPYG-------PRDKEEVAKFTWEMT 60 (269)
T ss_dssp CCCEEEEESSSTTHH---HHHHHHHHCTTC-CEEEEECG-------------GGCCCT-------TSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCccHHH---HHHHHHHHCCCC-cEEEEeCC-------------CCCCCC-------CCCHHHHHHHHHHHH
Confidence 35799999 999999 788888777643 23233222 234442 467889999999999
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~ 237 (332)
++|+++|||+|||||||+|.+ ++++++.+++|||||++++++.+.+.. .++|||||||++|+++++|++.++
T Consensus 61 ~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii~pa~~~A~~~~-------~~~~IGVLaT~~Ti~s~~y~~~i~ 133 (269)
T 3ist_A 61 NFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKAT-------RNNKIGVLGTLGTVESMAYPTALK 133 (269)
T ss_dssp HHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHHTHHHHHHH
T ss_pred HHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeecHHHHHHHHHHc-------CCCeEEEEeccchhhHHHHHHHHH
Confidence 999999999999999999994 999999999999999998887655431 234999999999999999999999
Q ss_pred hcCCeEEecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCceec
Q 020005 238 HEGFEVVLPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKKCID 312 (332)
Q Consensus 238 ~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ipvID 312 (332)
++|.++.++...++. + ++.++.|.. +.+++.+.++++.|.++|+|+|||||||||++.+... +..+++||
T Consensus 134 ~~~~~~~v~~~~~~~--l---V~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v~vID 208 (269)
T 3ist_A 134 GLNRRVEVDSLACPK--F---VSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVIN 208 (269)
T ss_dssp HHCTTCEEEEEECHH--H---HHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTSEEEC
T ss_pred HhCCCCEEeccCCHH--H---HHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCCeEEC
Confidence 986555444333332 3 467788886 3578889999999999999999999999999876532 33579999
Q ss_pred hHHHHHHHHHHHHHhh
Q 020005 313 PMDALARSTIKWVKSA 328 (332)
Q Consensus 313 ~~~~lA~a~v~~a~~~ 328 (332)
|.+++|+++.++....
T Consensus 209 s~~~~a~~~~~~l~~~ 224 (269)
T 3ist_A 209 SGEETASEVSALLDYH 224 (269)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999887543
No 9
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=100.00 E-value=4e-34 Score=268.76 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=169.7
Q ss_pred cchhhhc-cCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHH
Q 020005 73 SDALLNQ-ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI 150 (332)
Q Consensus 73 ~~~~~~~-~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i 150 (332)
-+.||+. ...|||+. |+|.++ .++.|.+..+.. +++-+.| ...+||. +++|+++
T Consensus 16 ~~~~~~~~~~~IgvfDSGvGGLt---v~~~i~~~lP~e---~~iy~~D-----------~a~~PYG-------~ks~e~i 71 (274)
T 3uhf_A 16 ENLYFQSNAMKIGVFDSGVGGLS---VLKSLYEARLFD---EIIYYGD-----------TARVPYG-------VKDKDTI 71 (274)
T ss_dssp -CCCCCCSCCEEEEEESSSTTHH---HHHHHHHTTCCS---EEEEEEC-----------TTTCCCT-------TSCHHHH
T ss_pred ceeeccCCCCeEEEEECCCChHH---HHHHHHHHCCCC---CEEEEec-----------CCCCCCC-------CCCHHHH
Confidence 3556654 45899999 999999 677777666543 3333332 1234553 5799999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
.+++.+.+++|+++|||+|||||||+|.+ ++++++.+++|||||++++++.+.+... ..++|||||||++|+++
T Consensus 72 ~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigiiepa~~~a~~~~~-----t~~~~IGVLaT~~Ti~s 146 (274)
T 3uhf_A 72 IKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALH-----DKNKEILVIATKATIKS 146 (274)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECSHHHHHHHHHHHHC-----CTTSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcCCHHHHHHHHHhcc-----cCCCeEEEEeccccccH
Confidence 99999999999999999999999999987 8999999999999999999998887510 02349999999999999
Q ss_pred hhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---
Q 020005 230 GFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD--- 304 (332)
Q Consensus 230 ~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~--- 304 (332)
++|++.++++|...|.|... . .++ ..++.|.. +..++.+.++++.|. |+|+|||||||||++.+..+
T Consensus 147 ~~Y~~~l~~~~~~~V~~~~~-~--~lV---~~IE~g~~~~~~~~~~~~~~l~~l~--g~D~iILGCTh~PlL~~~i~~~~ 218 (274)
T 3uhf_A 147 EEYQKRLLSQGYTNINALAT-G--LFV---PMVEEGIFEGDFLQSAMEYYFKNIT--TPDALILACTHFPLLGRSLSKYF 218 (274)
T ss_dssp THHHHHHHTTTCCCEEEEEC-T--THH---HHHHTTCCSSHHHHHHHHHHHTTCC--CCSEEEECSTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEecCC-H--HHH---HHHHcCCCCCHHHHHHHHHHHHHhc--CCCEEEECCCChHHHHHHHHHHc
Confidence 99999999998777776432 2 133 44566765 346777887777766 99999999999999986542
Q ss_pred CCCCceechHHHHHHHHHHHHH
Q 020005 305 PLLKKCIDPMDALARSTIKWVK 326 (332)
Q Consensus 305 ~~~ipvID~~~~lA~a~v~~a~ 326 (332)
+..+++|||++++|++++++..
T Consensus 219 ~~~v~lIDs~~~~A~~~~~~l~ 240 (274)
T 3uhf_A 219 GDKTKLIHSGDAIVEFLKEREN 240 (274)
T ss_dssp CTTCEEEEHHHHHHHHHHHHSC
T ss_pred CCCCEEEcCHHHHHHHHHHHHH
Confidence 2357999999999999998754
No 10
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-33 Score=266.78 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=169.1
Q ss_pred chhhhccCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIi-GGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
..+|+ ++|||+ +||| |+.++++|.+.++.. . ++-+.|. ...|+. ..+++++.+
T Consensus 18 ~~~m~--~~IGvfDsG~G---gltv~~~i~~~~P~~-~--~iy~~D~-----------~~~Pyg-------~~s~~~i~~ 71 (286)
T 2jfq_A 18 GSHMN--KPIGVIDSGVG---GLTVAKEIMRQLPNE-T--IYYLGDI-----------GRCPYG-------PRPGEQVKQ 71 (286)
T ss_dssp ---CC--SCEEEEESSST---THHHHHHHHHHCTTC-C--EEEEECT-----------TTCCCT-------TSCHHHHHH
T ss_pred ccccC--CcEEEEeCCCC---cHHHHHHHHHHCCCc-c--EEEeccC-----------CCCCcC-------CCCHHHHHH
Confidence 45663 479999 9999 777999999998765 1 2222211 123331 457888999
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhh
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF 231 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~l 231 (332)
++.+.+++|++.|||+|+|||||+|. +++++++.+++||++|++++++.+.+.. ..+|||||||++|+++++
T Consensus 72 ~~~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~e~a~~~A~~~~-------~~~rIgVLaT~~T~~~~~ 144 (286)
T 2jfq_A 72 YTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTT-------RNQNVLVLGTEGTIKSEA 144 (286)
T ss_dssp HHHHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHHTH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEeccHHHHHHHHHhc-------CCCEEEEEeChHHhcchH
Confidence 99999999999999999999999996 7999999999999999999998877631 234999999999999999
Q ss_pred HHHHHHhc--CCeEE-ecCccchhhchHHHHHHHhcCCh--HHH-HHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC-
Q 020005 232 YQEKLQHE--GFEVV-LPDKATMEHTLIPALDALNRKDV--EGA-RNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD- 304 (332)
Q Consensus 232 Y~~~l~~~--Gi~vv-~P~~~~q~~~l~~~i~~ik~g~~--~~a-~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~- 304 (332)
|++.++++ |++++ .+... + ++.++.|.. +.. ++.+.++++.|.++|+|+|||||||||++.+...
T Consensus 145 y~~~l~~~~~~~~v~~~~~~~-----~---v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCTh~p~l~~~i~~ 216 (286)
T 2jfq_A 145 YRTHIKRINPHVEVHGVACPG-----F---VPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYD 216 (286)
T ss_dssp HHHHHHHHCTTCEEEEEECTT-----H---HHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESSSGGGGHHHHHH
T ss_pred HHHHHHHhCCCCEEEecCCHH-----H---HHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCcCHHHHHHHHHH
Confidence 99999988 77775 35432 2 467778876 446 7889999999988899999999999999876542
Q ss_pred --CCCCceechHHHHHHHHHHHHHh
Q 020005 305 --PLLKKCIDPMDALARSTIKWVKS 327 (332)
Q Consensus 305 --~~~ipvID~~~~lA~a~v~~a~~ 327 (332)
+.++|+|||.+++|++++++...
T Consensus 217 ~l~~~vpvIDs~~a~a~~~~~~l~~ 241 (286)
T 2jfq_A 217 YFGGKKTVISSGLETAREVSALLTF 241 (286)
T ss_dssp HTTTCSEEEEHHHHHHHHHHHHHHH
T ss_pred HcCCCCEEECcHHHHHHHHHHHHHh
Confidence 33589999999999999998754
No 11
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=100.00 E-value=2.9e-32 Score=254.94 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=168.9
Q ss_pred CeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
+.|||+. |+|.++ ++++|.+..+.. + ++-+.|. ...|+. ..+++++.+++.+.++
T Consensus 4 ~~IgvfDSGvGGlt---v~~~i~~~lP~~-~--~iy~~D~-----------~~~Pyg-------~~s~~~i~~~~~~~~~ 59 (267)
T 2gzm_A 4 RAIGVIDSGVGGLT---VAKELIRQLPKE-R--IIYLGDT-----------ARCPYG-------PRSREEVRQFTWEMTE 59 (267)
T ss_dssp SCEEEEESSSTTHH---HHHHHHHHCTTS-C--EEEEECT-----------TTCCCT-------TSCHHHHHHHHHHHHH
T ss_pred CcEEEEeCCccHHH---HHHHHHHHCCCC-C--EEEecCC-----------CCCCCC-------CCCHHHHHHHHHHHHH
Confidence 4799996 999887 889999888754 2 2222221 223332 4578899999999999
Q ss_pred HHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHh
Q 020005 160 FLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~ 238 (332)
+|++.|||+|+|||||+|. +++++++.+++||++|++++++.+.+.. .++|||||||++|+++++|++.+++
T Consensus 60 ~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~ep~~~~A~~~~-------~~~rIgVlaT~~T~~~~~y~~~l~~ 132 (267)
T 2gzm_A 60 HLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVT-------NTYHVGIIGTIGTVKSGAYEEALKS 132 (267)
T ss_dssp HHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSCEEEEEECHHHHHHTHHHHHHHH
T ss_pred HHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeecHHHHHHHHHcc-------CCCEEEEEEChHHhccHHHHHHHHH
Confidence 9999999999999999996 7999999999999999999999887641 2349999999999999999999999
Q ss_pred c--CCeEEe-cCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCce
Q 020005 239 E--GFEVVL-PDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKKC 310 (332)
Q Consensus 239 ~--Gi~vv~-P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ipv 310 (332)
+ |++++. |... + +..++.|.. +..++.+.++++.+.++|+|+|||||||||++.+..+ +.++|+
T Consensus 133 ~~~g~~v~~~~~~~-----~---v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpv 204 (267)
T 2gzm_A 133 INNRVMVESLACPP-----F---VELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQL 204 (267)
T ss_dssp HCTTCEEEEEECTT-----H---HHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEE
T ss_pred hCCCCEEeccCCHH-----H---HHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEE
Confidence 8 888873 4432 3 356777876 4577889999999998999999999999999876542 335899
Q ss_pred echHHHHHHHHHHHHHh
Q 020005 311 IDPMDALARSTIKWVKS 327 (332)
Q Consensus 311 ID~~~~lA~a~v~~a~~ 327 (332)
|||.+++|++++++...
T Consensus 205 iDs~~~~a~~~~~~l~~ 221 (267)
T 2gzm_A 205 ISSGDETAREVSTILYH 221 (267)
T ss_dssp EEHHHHHHHHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHh
Confidence 99999999999998754
No 12
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-32 Score=254.99 Aligned_cols=208 Identities=14% Similarity=0.212 Sum_probs=168.1
Q ss_pred CeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
++|||+. |+|.++ ++++|.+..+.. + ++-+.|. ...|+. ..+++++.+++.+.++
T Consensus 4 ~~IgvfDSGvGGlt---v~~~i~~~lP~~-~--~iy~~D~-----------~~~PyG-------~~s~~~i~~~~~~~~~ 59 (272)
T 1zuw_A 4 QPIGVIDSGVGGLT---VAKEIMRQLPKE-N--IIYVGDT-----------KRCPYG-------PRPEEEVLQYTWELTN 59 (272)
T ss_dssp SCEEEEESSSTTHH---HHHHHHHHSTTC-C--EEEEECG-----------GGCCCS-------SSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCcchHH---HHHHHHHhCCCC-c--EEEeccC-----------CCCCCC-------CCCHHHHHHHHHHHHH
Confidence 4799995 999766 899999888754 2 2222221 123332 4578889999999999
Q ss_pred HHHH-cCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHH
Q 020005 160 FLEK-AGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (332)
Q Consensus 160 ~Le~-~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~ 237 (332)
+|++ .|||+|||||||+|. +++++++.+++||++|++++++.+.+.. .++|||||||++|+++++|++.++
T Consensus 60 ~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~-------~~~rIgVlaT~~T~~s~~y~~~i~ 132 (272)
T 1zuw_A 60 YLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKVT-------DNQHIGVIGTENTIKSNAYEEALL 132 (272)
T ss_dssp HHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHTTHHHHHHH
T ss_pred HHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcccHHHHHHHHHhc-------CCCEEEEEEChhhhhhhHHHHHHH
Confidence 9999 999999999999996 6999999999999999999998877631 234999999999999999999999
Q ss_pred hc--CCeEE-ecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCc
Q 020005 238 HE--GFEVV-LPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKK 309 (332)
Q Consensus 238 ~~--Gi~vv-~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ip 309 (332)
++ |++++ .+... + ++.++.|+. +..++.+.++++.|.++|+|+|||||||||++.+... +.++|
T Consensus 133 ~~~~~~~v~~~~~~~-----~---v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~ 204 (272)
T 1zuw_A 133 ALNPDLKVENLACPL-----L---VPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVN 204 (272)
T ss_dssp HHCTTCEEEEEECTT-----H---HHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSE
T ss_pred HhCCCCEEEeccCHH-----H---HHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCe
Confidence 88 77775 34432 3 467888886 4467889999999998999999999999999876542 33589
Q ss_pred eechHHHHHHHHHHHHHh
Q 020005 310 CIDPMDALARSTIKWVKS 327 (332)
Q Consensus 310 vID~~~~lA~a~v~~a~~ 327 (332)
+|||.+++|++++++...
T Consensus 205 vIDs~~~~a~~~~~~l~~ 222 (272)
T 1zuw_A 205 IISSGDETAREVSTILSY 222 (272)
T ss_dssp EEEHHHHHHHHHHHHHHH
T ss_pred EECcHHHHHHHHHHHHHh
Confidence 999999999999988654
No 13
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=99.97 E-value=6.2e-31 Score=247.14 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=166.6
Q ss_pred CeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
++|||+. |+|.+. ++++|.+..+.. + ++.+.|.. ..|+. ..+++++.+++.+.++
T Consensus 8 ~~IgvfDSGvGGlt---v~~~i~~~lP~~-~--~iy~~D~~-----------~~PyG-------~~s~~~i~~~~~~~~~ 63 (276)
T 2dwu_A 8 SVIGVLDSGVGGLT---VASEIIRQLPKE-S--ICYIGDNE-----------RCPYG-------PRSVEEVQSFVFEMVE 63 (276)
T ss_dssp CEEEEEESSSTTHH---HHHHHHHHCTTS-C--EEEEECGG-----------GCCCT-------TSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCcchHH---HHHHHHHhCCCC-c--EEEccCCC-----------CCCCC-------CCCHHHHHHHHHHHHH
Confidence 4899995 999776 889999888765 2 33333222 23331 4578889999999999
Q ss_pred HHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHh
Q 020005 160 FLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~ 238 (332)
+|++.|+|+|+|+|||+| ++++++++.+++||++|++++++.+.+.. .++|||||||++|+++++|++.+++
T Consensus 64 ~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigiiep~~~~A~~~~-------~~~rIgVlaT~~T~~s~~y~~~i~~ 136 (276)
T 2dwu_A 64 FLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVT-------KKGKIGVIGTVGTIQSNMYEKALHE 136 (276)
T ss_dssp HHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHC-------SSSEEEEEECHHHHHTTHHHHHHHH
T ss_pred HHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEeccHHHHHHHHHhc-------CCCeEEEEeChhhhhhHHHHHHHHH
Confidence 999999999999999999 58999999999999999999998877631 2349999999999999999999998
Q ss_pred c--CCeEE-ecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---CCCCce
Q 020005 239 E--GFEVV-LPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---PLLKKC 310 (332)
Q Consensus 239 ~--Gi~vv-~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~~~ipv 310 (332)
+ +++++ .+.+. + ++.++.|+. +..++.+.++++.|.++|+|+|||||||||++.+... +.++|+
T Consensus 137 ~~~~~~v~~~~~~~-----~---v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~v 208 (276)
T 2dwu_A 137 LDTYLKVHSHACPT-----L---ATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTI 208 (276)
T ss_dssp HCTTCEEEEEECTT-----H---HHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEE
T ss_pred hCCCCEEEeeeCHH-----H---HHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeE
Confidence 7 56664 34322 3 456777876 4467889999999988999999999999999876542 335899
Q ss_pred echHHHHHHHHHHHHHh
Q 020005 311 IDPMDALARSTIKWVKS 327 (332)
Q Consensus 311 ID~~~~lA~a~v~~a~~ 327 (332)
|||.+++|+++.++...
T Consensus 209 IDs~~~~a~~~~~~l~~ 225 (276)
T 2dwu_A 209 ISSAEETAIELSTILQH 225 (276)
T ss_dssp EEHHHHHHHHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHh
Confidence 99999999999998754
No 14
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=99.97 E-value=4.2e-31 Score=249.45 Aligned_cols=214 Identities=16% Similarity=0.174 Sum_probs=160.7
Q ss_pred ccCeEEEE-eCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 79 QANTVGIV-GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 79 ~~k~IGIi-GGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
..++|||+ .|+|.++ ++++|.+.++.. +++-+.| ...+|+. ..+.+++.++..+.
T Consensus 20 ~~~~IgvfDSGvGGlt---v~~~i~~~lP~~---~~iy~~D-----------~~~~PyG-------~~s~~~i~~~~~~i 75 (285)
T 2jfn_A 20 PRPTVLVFDSGVGGLS---VYDEIRHLLPDL---HYIYAFD-----------NVAFPYG-------EKSEAFIVERVVAI 75 (285)
T ss_dssp CEEEEEEEESSSTHHH---HHHHHHHHSTTS---EEEEEEC-----------TTTCCTT-------TSCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCccHHH---HHHHHHHhCCCC---CeEEeec-----------cCCCCCc-------cCCHHHHHHHHHHH
Confidence 34579999 6999766 899999988753 1221111 1122331 23556677777777
Q ss_pred HHHH-HHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHH
Q 020005 158 RVFL-EKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK 235 (332)
Q Consensus 158 ~~~L-e~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~ 235 (332)
+++| ++.|||+|+|||||+|. +++++++.+++||++|.+++..+++..+ ++|||||||++|+++++|++.
T Consensus 76 ~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~~a~~~a~~~~~--------~~rIgVLaT~~T~~s~~y~~~ 147 (285)
T 2jfn_A 76 VTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTA--------NGIVGLLATRGTVKRSYTHEL 147 (285)
T ss_dssp HHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCCCCHHHHHHHCS--------SSEEEEEECTTGGGCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehHHHHHHHHHhcC--------CCEEEEEEcHHHHhhHHHHHH
Confidence 8876 45899999999999995 8999999999999999887777665433 349999999999999999999
Q ss_pred HHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHh--CCCCEEEECCCCcccCCCCCC---CCCCce
Q 020005 236 LQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLV--RAVNTVILASDDMQDLLPPDD---PLLKKC 310 (332)
Q Consensus 236 l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~--~gad~VILGCTElpli~~~~~---~~~ipv 310 (332)
++++|.++.++....+. +++.+++.+.+. +..++.+.++++.+.+ .|+|+|||||||||++.+..+ +..+|+
T Consensus 148 l~~~g~~~~v~~~~~~~--lv~~ie~~~~~~-~~~~~~l~~~l~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpv 224 (285)
T 2jfn_A 148 IARFANECQIEMLGSAE--MVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRL 224 (285)
T ss_dssp HHHSCTTSEEEEEECHH--HHHHHHHHHHTC-CCCHHHHHHHTHHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEE
T ss_pred HHHhCCCCEEeCCCCHH--HHHHHHhcccCC-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEE
Confidence 99998665555444332 445566655444 2356788888888875 589999999999999876532 224799
Q ss_pred echHHHHHHHHHHHHHh
Q 020005 311 IDPMDALARSTIKWVKS 327 (332)
Q Consensus 311 ID~~~~lA~a~v~~a~~ 327 (332)
|||.+++|++++++...
T Consensus 225 iDs~~a~a~~~~~~l~~ 241 (285)
T 2jfn_A 225 VDSGAAIARRTAWLLEH 241 (285)
T ss_dssp ECSHHHHHHHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHh
Confidence 99999999999998754
No 15
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=99.97 E-value=5.5e-31 Score=244.45 Aligned_cols=205 Identities=21% Similarity=0.240 Sum_probs=162.0
Q ss_pred eEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
+|||+. |+|.++ +++++.+.++.. .++-+.|. ...|+. ..+++++.+++.+.+++
T Consensus 2 ~IgvfDSG~Gglt---v~~~l~~~~P~~---~~iy~~D~-----------~~~pyG-------~~s~~~i~~~~~~~~~~ 57 (254)
T 1b73_A 2 KIGIFDSGVGGLT---VLKAIRNRYRKV---DIVYLGDT-----------ARVPYG-------IRSKDTIIRYSLECAGF 57 (254)
T ss_dssp EEEEEESSSGGGT---HHHHHHHHSTTC---EEEEEECT-----------TTCCCT-------TSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCccHHH---HHHHHHHhCCCC---cEEEeecC-----------CCCCCC-------cCCHHHHHHHHHHHHHH
Confidence 699996 999766 999999888754 12222221 122331 45678899999999999
Q ss_pred HHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc
Q 020005 161 LEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~ 239 (332)
|++.|+|+|+|||||+| ++++++++.+++||++|++++++.+.+.. ..+|||||||++|+++++|++.++..
T Consensus 58 L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~~~~~A~~~~-------~~~rigVlaT~~T~~~~~y~~~l~~~ 130 (254)
T 1b73_A 58 LKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKS-------RNKKIGVIGTPATVKSGAYQRKLEEG 130 (254)
T ss_dssp HHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHHHHHHHHHHC-------SSCEEEEEECHHHHHHCHHHHHHHTT
T ss_pred HHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHcc-------CCCEEEEEEChHHhhhHHHHHHHHcC
Confidence 99999999999999999 57999999999999999999998876631 23499999999999999999999988
Q ss_pred CCeEEe-cCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC-CC-CCceechH
Q 020005 240 GFEVVL-PDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD-PL-LKKCIDPM 314 (332)
Q Consensus 240 Gi~vv~-P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~-~~-~ipvID~~ 314 (332)
|++++. |... + ++.++.|+. +..++.+.++++.+.++ +|+|||||||||++.+..+ .. ++|+|||.
T Consensus 131 g~~v~~~~~~~-----~---v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~l~~~i~~~~~~vpviDs~ 201 (254)
T 1b73_A 131 GADVFAKACPL-----F---APLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPLLKKEIKKFLGDAEVVDSS 201 (254)
T ss_dssp SCEEEEEECCC-----C---TTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTCCHHHHHHHSCSCEEECHH
T ss_pred CCEEEecCCHH-----H---HHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHHHHHHHHHHcCCCeEECCH
Confidence 999863 4432 2 245566665 44678888888888877 9999999999999876532 11 68999999
Q ss_pred HHHHHHHHHHHH
Q 020005 315 DALARSTIKWVK 326 (332)
Q Consensus 315 ~~lA~a~v~~a~ 326 (332)
+++|++++++..
T Consensus 202 ~~~a~~~~~~l~ 213 (254)
T 1b73_A 202 EALSLSLHNFIK 213 (254)
T ss_dssp HHHHHTTTTTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999877653
No 16
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=99.97 E-value=3.5e-30 Score=239.29 Aligned_cols=210 Identities=15% Similarity=0.129 Sum_probs=159.9
Q ss_pred eEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
.|||+. |+|.++ .++.|.+..+.. +++.+-|. ...|+. ..+|+++.+.+.+.+++
T Consensus 2 ~igvfDSG~GGlt---v~~~l~~~lP~~---~~iy~~D~-----------~~~Pyg-------~~s~~~i~~~~~~~~~~ 57 (255)
T 2jfz_A 2 KIGVFDSGVGGFS---VLKSLLKARLFD---EIIYYGDS-----------ARVPYG-------TKDPTTIKQFGLEALDF 57 (255)
T ss_dssp EEEEEESSSTTHH---HHHHHHHTTCCS---EEEEEECT-----------TTCCCT-------TSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCccHHH---HHHHHHHHCCCC---CEEEEeCC-----------CCCCCC-------CCCHHHHHHHHHHHHHH
Confidence 699999 999999 677777666543 23322211 123332 45789999999999999
Q ss_pred HHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc
Q 020005 161 LEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~ 239 (332)
|++.|||+|+|||||+|. +++++++.+++||++|++++++.+.+... ...+|||||||++|+++++|++.++++
T Consensus 58 L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigii~~av~~A~~~~~-----~~~~rigVlaT~~T~~~~~y~~~l~~~ 132 (255)
T 2jfz_A 58 FKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVE-----DKNAPILVLGTKATIQSNAYDNALKQQ 132 (255)
T ss_dssp HGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSHHHHHHHHHHCC-----CTTSCEEEEECHHHHHHTHHHHHHHHT
T ss_pred HHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHhhc-----CCCCEEEEEECHHHHhChHHHHHHHHc
Confidence 999999999999999995 89999999999999988888887765300 023499999999999999999999999
Q ss_pred CCeEEecCccchhhchHHHHHHHhcCCh--HHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCCC---C------CCC
Q 020005 240 GFEVVLPDKATMEHTLIPALDALNRKDV--EGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPDD---P------LLK 308 (332)
Q Consensus 240 Gi~vv~P~~~~q~~~l~~~i~~ik~g~~--~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~~---~------~~i 308 (332)
|...+.+.. .. . + ++.++.|.. +..++.+.++++. .+.|+|+|||||||||++.+..+ + ..+
T Consensus 133 g~~~v~~~~-~~-~-l---v~~ie~g~~~~~~~~~~l~~~~~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~~~~~~~~v 205 (255)
T 2jfz_A 133 GYLNISHLA-TS-L-F---VPLIEESILEGELLETCMHYYFTP-LEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPP 205 (255)
T ss_dssp TCCCEEEEE-CT-T-H---HHHHHTTCCSSHHHHHHHHHHHTT-CCSCCSEEEEESTTGGGGHHHHHHHHHHHSCCSSCC
T ss_pred CCCEEEecC-hH-H-H---HHHHHhcccCCHHHHHHHHHHHhh-hcCCCCEEEEcCcChHHHHHHHHHHhCccccCCCCC
Confidence 843443321 11 1 3 456677765 3466777777777 66799999999999999875532 1 247
Q ss_pred ceechHHHHHHHHHHHHHh
Q 020005 309 KCIDPMDALARSTIKWVKS 327 (332)
Q Consensus 309 pvID~~~~lA~a~v~~a~~ 327 (332)
|+|||.+++|++++++...
T Consensus 206 ~viDs~~~~a~~~~~~l~~ 224 (255)
T 2jfz_A 206 LLIHSGDAIVEYLQQKYAL 224 (255)
T ss_dssp EEEEHHHHHHHHHHHHTTC
T ss_pred EEECcHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 17
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=2.6e-25 Score=201.88 Aligned_cols=200 Identities=15% Similarity=0.099 Sum_probs=145.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcc-hhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLL-NKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~i-p~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
+||+|+++++.++..-|.++. +.+ +-+++ ..+ + .++ ...+++..+.+.+.+.++.
T Consensus 7 ~IG~i~p~s~~~~e~~~~~~~---~~~----v~~~~-~r~~~----~~~------------~~~~~~~~~~~~l~~~a~~ 62 (223)
T 2dgd_A 7 RIGVILPANNAGMEYDLWKMA---PEG----VSIHS-TRMKP----TKG------------CEPENVEEFEKELKYSYSL 62 (223)
T ss_dssp EEEEEEETTCCSHHHHHHHHC---CTT----EEEEE-EEECC----CSS------------SSCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHc---cCC----eEEEE-Eeeec----CCC------------CCHHHHHHHHHHHHHHHHH
Confidence 899999999999998554442 212 22212 111 1 001 1234566777888999999
Q ss_pred HHHcCCcEEEEeCCCchhhH----HHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHH
Q 020005 161 LEKAGARCIVMPCHLSHIWH----DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~~----d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l 236 (332)
|+++ +|+|+++|||+|.++ +++++.+++| .++++++++..|.+ |||||+|..+...++|++.+
T Consensus 63 L~~~-~d~ivi~Cnt~~~~~g~~~~~l~~~~~iP----~~a~~~a~~~~g~~--------rvgvlt~~~~~~~~~~~~~l 129 (223)
T 2dgd_A 63 LAEV-SDIIIYGRTYGTHKHAHVIKRVIKDVVIP----EESVYELLKKLNVR--------KLWIGTPYIKERTLEEVEWW 129 (223)
T ss_dssp HTTT-CSEEEECCCTTTTTCHHHHHHHSTTCBCH----HHHHHHHHHHTTCC--------EEEEEESSCHHHHHHHHHHH
T ss_pred hhcc-CCEEEEcCCHHHHhhhHHHHHHHHhcCCC----HHHHHHHHHHcCCC--------eEEEEeCCchHHHHHHHHHH
Confidence 9999 999999999999886 9999999999 78888888776544 99999765555588999999
Q ss_pred HhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhC--CCCEEEECCCCcccC--CCCC-CCCCCcee
Q 020005 237 QHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVR--AVNTVILASDDMQDL--LPPD-DPLLKKCI 311 (332)
Q Consensus 237 ~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~--gad~VILGCTElpli--~~~~-~~~~ipvI 311 (332)
+++|++++.|....+.. .++.|..+ .+.+.++++.+.+. |+|+|||||||||++ .+.. ...++|+|
T Consensus 130 ~~~G~~v~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVi 200 (223)
T 2dgd_A 130 RNKGFEIVGYDGLGKIR-------GIDISNTP--IFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVV 200 (223)
T ss_dssp HTTTCEEEEEEECCCCS-------HHHHHTCC--HHHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEE
T ss_pred HhCCcEEecccCCCCCC-------cchhhccC--HHHHHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEE
Confidence 99999998886554421 22223332 13466666677667 999999999999985 3321 12347999
Q ss_pred chHHHHHHHHHHHHHh
Q 020005 312 DPMDALARSTIKWVKS 327 (332)
Q Consensus 312 D~~~~lA~a~v~~a~~ 327 (332)
|+.++++.++++++..
T Consensus 201 ds~~~~a~~~l~~~g~ 216 (223)
T 2dgd_A 201 SENAAAMWEALNKLKI 216 (223)
T ss_dssp EHHHHHHHHHHHHHTC
T ss_pred EhHHHHHHHHHHHcCC
Confidence 9999999999998743
No 18
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=99.90 E-value=1.5e-23 Score=193.83 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=145.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (332)
+|.||=-.+..+.-+-+++..+.... ....++.++.|.-|..+ +...||......+.+.++.|
T Consensus 3 rilvINPnts~~~T~~i~~~~~~~~~-p~~~i~~~t~~~gp~~i----------------~~~~d~~~a~~~l~~~~~~l 65 (245)
T 3qvl_A 3 RIQVINPNTSLAMTETIGAAARAVAA-PGTEILAVCPRAGVPSI----------------EGHFDEAIAAVGVLEQIRAG 65 (245)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHHCC-TTEEEEEECCSSSCSSC----------------CSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCchhh----------------cChhHHHHHHHHHHHHHHHH
Confidence 46666544444444444444443322 34566666643322111 12457777888888889999
Q ss_pred HHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCC
Q 020005 162 EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGF 241 (332)
Q Consensus 162 e~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi 241 (332)
++.|+|+|+|+|||+|.+ +++++.+++||++|++++++.+...+ +|||||+|.+|+. +.|++.++++|.
T Consensus 66 ~~~g~d~iviaCnt~~~l-~~lr~~~~iPvigi~e~~~~~a~~~~---------~rigVlaT~~t~~-~~~~~~l~~~g~ 134 (245)
T 3qvl_A 66 REQGVDGHVIASFGDPGL-LAARELAQGPVIGIAEAAMHMATMVA---------TRFSIVTTLPRTL-IIARHLLHQYGF 134 (245)
T ss_dssp HHHTCSEEEEC-CCCTTH-HHHHHHCSSCEEEHHHHHHHHHHHHC---------SCEEEEESCGGGH-HHHHHHHHHHTC
T ss_pred HHCCCCEEEEeCCChhHH-HHHHHHcCCCEECccHHHHHHHHHcC---------CEEEEEEcchhHH-HHHHHHHHHcCC
Confidence 999999999999999987 99999999999999999998887764 2899999999986 899999999987
Q ss_pred eEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHH-hCCCCEEEECCCCcccCCCCCC-CCCCceechHHHHHH
Q 020005 242 EVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLL-VRAVNTVILASDDMQDLLPPDD-PLLKKCIDPMDALAR 319 (332)
Q Consensus 242 ~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~-~~gad~VILGCTElpli~~~~~-~~~ipvID~~~~lA~ 319 (332)
+..+..-....-.+ .++.. +.++..+.+.+.+..+. ++|+|+|||||||||++.+... ..++|+||+..+.++
T Consensus 135 ~~~~~~v~~~~~~~----~~l~~-~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~ 209 (245)
T 3qvl_A 135 HQHCAALHAIDLPV----LALED-GSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVK 209 (245)
T ss_dssp GGGEEEEEECCSCG----GGGGS-SSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHH
T ss_pred CCeEEEEeCCCCCH----HHHcC-CcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHH
Confidence 54221000000001 12222 22345556666555554 5899999999999998875432 234899999999999
Q ss_pred HHHHHHH
Q 020005 320 STIKWVK 326 (332)
Q Consensus 320 a~v~~a~ 326 (332)
.+..+..
T Consensus 210 ~~~~l~~ 216 (245)
T 3qvl_A 210 MVESLVA 216 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877653
No 19
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=99.90 E-value=5.1e-24 Score=199.84 Aligned_cols=210 Identities=13% Similarity=0.121 Sum_probs=149.4
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++||+|+++++.++..++.++.... . .+.+.+++ ..++. .+.++.. -..+.+.+.+.++
T Consensus 25 ~~rIGlI~p~s~~s~e~~~~~~~~~~-~--~~~~~~~~-ar~~~----~~v~~~~------------l~~~~~~l~~aa~ 84 (273)
T 2xed_A 25 IRRIGLVVPSSNVTVETEMPALLSRH-P--GAEFSFHS-TRMRM----HTVSPEG------------LAAMNAQRERCVL 84 (273)
T ss_dssp SEEEEEEEETTCCSHHHHHHHHHTTC-S--SCCEEEEE-EEECC----CBCSHHH------------HHHHHTTHHHHHH
T ss_pred CCEEEEEECCCchhHHHHHHHHhccc-c--cCCeEEEE-eCCcc----CCCCHHH------------HHHHHHHHHHHHH
Confidence 46899999999999999877765311 1 00222222 11110 0111111 1123344677889
Q ss_pred HHHHcCCcEEEEeCCCchhhH---------HHHhhhC-----CCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 160 FLEKAGARCIVMPCHLSHIWH---------DEVCKGC-----SVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~---------d~l~~~~-----~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
.|+++|+|+|+++|||+|.++ ++|++.+ ++|++++.+++++.++..|.+ |||||+|..
T Consensus 85 ~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~~--------rvgvltp~~ 156 (273)
T 2xed_A 85 EIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQ--------RVALVTPYM 156 (273)
T ss_dssp HHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTCC--------EEEEEECSC
T ss_pred HHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCCC--------eEEEEcCCh
Confidence 999999999999999999885 9999999 999999999999998876654 999997555
Q ss_pred hhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC-CCCcccC--CCC
Q 020005 226 ILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA-SDDMQDL--LPP 302 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG-CTElpli--~~~ 302 (332)
+...++|++.++++|++++.|....+.. .++.|..+ .+.+.++++.+.+.|+|+|||| |||||.+ .+.
T Consensus 157 ~~~~~~~~~~l~~~Gi~v~~~~~~~~~~-------~~~~g~~~--~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~ 227 (273)
T 2xed_A 157 RPLAEKVVAYLEAEGFTISDWRALEVAD-------NTEVGCIP--GEQVMAAARSLDLSEVDALVISCAVQMPSLPLVET 227 (273)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCCB-------HHHHHTCC--HHHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHH
T ss_pred hhhHHHHHHHHHHCCCEEeccccCCCcc-------chhhcccC--HHHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHH
Confidence 5457799999999999998875543321 22223322 2456777778877799999999 9999985 232
Q ss_pred C-CCCCCceechHHHHHHHHHHHHH
Q 020005 303 D-DPLLKKCIDPMDALARSTIKWVK 326 (332)
Q Consensus 303 ~-~~~~ipvID~~~~lA~a~v~~a~ 326 (332)
. ...++|+||+.++++.++++++.
T Consensus 228 le~~lg~PVids~~a~a~~~l~~~g 252 (273)
T 2xed_A 228 AEREFGIPVLSAATAGAYSILRSLD 252 (273)
T ss_dssp HHHHHSSCEEEHHHHHHHHHHHHTT
T ss_pred HHHHhCCCEEcHHHHHHHHHHHHcC
Confidence 1 12357999999999999988764
No 20
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=99.90 E-value=8.9e-24 Score=191.83 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 147 ~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+....+.+.+.+++|++.|+|+|+|+|||+ ++++++++.+++||++|++++++.+...+ +|||||+|.+|
T Consensus 57 ~~~~~~~l~~~~~~l~~~g~d~iviaCnta-~~~~~l~~~~~iPvi~i~~~~~~~a~~~~---------~rigVlat~~t 126 (228)
T 2eq5_A 57 EREAEPKIIRLAKEFEREGVDAIIISCAAD-PAVEKVRKLLSIPVIGAGSSVSALALAYG---------RRVGVLNLTEE 126 (228)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECSTTC-TTHHHHHHHCSSCEEEHHHHHHHHHHTTC---------SSEEEECSSSC
T ss_pred HHHhHHHHHHHHHHHHHCCCCEEEEeCCch-HHHHHHHHhCCCCEeCccHHHHHHHHHhC---------CeEEEEecCcc
Confidence 444556777888899999999999999999 88999999999999999999998876543 38999999999
Q ss_pred hchhhHHHHH-HhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEECCCCcc--cCCCCC
Q 020005 227 LTAGFYQEKL-QHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILASDDMQ--DLLPPD 303 (332)
Q Consensus 227 ~~s~lY~~~l-~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILGCTElp--li~~~~ 303 (332)
+.+ .|++.+ +++|.++..+.- +. + .++.. +...+.+.++++.+.++|+|+||||||||| ++.+..
T Consensus 127 ~~~-~~~~~~~~~~g~~~~~~~~--~~--v----~~~~~---~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i 194 (228)
T 2eq5_A 127 TPK-VIRSILGNNLIAEDHPSGV--SN--T----LDLLT---DWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVL 194 (228)
T ss_dssp CCH-HHHHHHGGGEEEEECCTTC--CS--G----GGGGS---HHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHH
T ss_pred cHH-HHHHHHHHHhCccccCCce--ee--H----HHhcC---hHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHH
Confidence 985 799999 999988754432 21 1 12221 346677888888898889999999999999 877543
Q ss_pred C-CCCCceechHHHHHHHHHHHHHh
Q 020005 304 D-PLLKKCIDPMDALARSTIKWVKS 327 (332)
Q Consensus 304 ~-~~~ipvID~~~~lA~a~v~~a~~ 327 (332)
. ..++|+|||.+++++.+.++...
T Consensus 195 ~~~~~vpvids~~~~a~~~~~~l~~ 219 (228)
T 2eq5_A 195 EEEVGIPVIDPVIASGAVALHALKR 219 (228)
T ss_dssp HHHHSSCEECHHHHHHHHHHHHHHT
T ss_pred HHHcCCCEEchHHHHHHHHHHHHhc
Confidence 2 23579999999999999887643
No 21
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=99.88 E-value=2.7e-23 Score=191.53 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEE
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---------~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
.+.+.+.+.++.|+++|+|+|+++|||+|.| .++|++.+++|++++.++++++++..|.+ |||
T Consensus 50 ~~~~~l~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~--------rvg 121 (240)
T 3ixl_A 50 AVIESVVDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVR--------RVA 121 (240)
T ss_dssp HHGGGHHHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCS--------EEE
T ss_pred HHHHHHHHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCC--------EEE
Confidence 3444478889999999999999999999974 59999999999999999999999998765 999
Q ss_pred EEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHH-H-HhCCCCEEEECCCCcc
Q 020005 220 VLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQV-L-LVRAVNTVILASDDMQ 297 (332)
Q Consensus 220 lLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~-L-~~~gad~VILGCTElp 297 (332)
|++|..+..+++|++.|++.|++++.|....+.. +++.|..+ .+.+.++++. + ...|+|+|||||||||
T Consensus 122 lltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~l~~~~~adaivL~CT~l~ 192 (240)
T 3ixl_A 122 LATAYIDDVNERLAAFLAEESLVPTGCRSLGITG-------VEAMARVD--TATLVDLCVRAFEAAPDSDGILLSSGGLL 192 (240)
T ss_dssp EEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCC-------HHHHHTCC--HHHHHHHHHHHHHTSTTCSEEEEECTTSC
T ss_pred EEeCChHHHHHHHHHHHHHCCCEEeccccCCCCC-------cchhhcCC--HHHHHHHHHHHhhcCCCCCEEEEeCCCCc
Confidence 9998555558999999999999999876554331 12223332 3356777777 6 6679999999999999
Q ss_pred cCC--CC-CCCCCCceechHHHHHHHHHHHHHhh
Q 020005 298 DLL--PP-DDPLLKKCIDPMDALARSTIKWVKSA 328 (332)
Q Consensus 298 li~--~~-~~~~~ipvID~~~~lA~a~v~~a~~~ 328 (332)
.+. +. ....++|+||+.++++..+++.+.-.
T Consensus 193 ~l~~i~~le~~lg~PVids~~a~~w~~lr~~g~~ 226 (240)
T 3ixl_A 193 TLDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGG 226 (240)
T ss_dssp CTTHHHHHHHHHSSCEEEHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHhCCCEEeHHHHHHHHHHHHcCCC
Confidence 874 32 12235799999999999999987544
No 22
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.58 E-value=0.18 Score=45.10 Aligned_cols=158 Identities=14% Similarity=0.182 Sum_probs=88.0
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++.... ....++.++ .++|++-+ ...+++++.+.|.+ |
T Consensus 57 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~--~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 126 (285)
T 3c3k_A 57 LTLLSGKMVDGVITMDALSELPELQNII--GAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSGKK--------R 126 (285)
T ss_dssp THHHHTTCCSEEEECCCGGGHHHHHHHH--TTSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHHTTCC--------C
T ss_pred HHHHHhCCCCEEEEeCCCCChHHHHHHh--cCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------e
Confidence 455677899988886543 234566665 57777643 34456677777665 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeEE-ec-CccchhhchHHHHHH---HhcC-ChHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEVV-LP-DKATMEHTLIPALDA---LNRK-DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~vv-~P-~~~~q~~~l~~~i~~---ik~g-~~~~----a~~~l~~~~~~L~ 282 (332)
|++++.... -+..-|.+.++++|+++. .. +..... -...+.. ++.+ +.+. .......+++.+.
T Consensus 127 I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 204 (285)
T 3c3k_A 127 IALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDY--MAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALT 204 (285)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSH--HHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCChHH--HHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHH
Confidence 999986431 122337888888887642 22 211111 1122333 3333 2221 1223334555666
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+.| -|.-|.|+...+... ...+. +..|+ +...+++.+++.....-
T Consensus 205 ~~g~~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~i 254 (285)
T 3c3k_A 205 ESGLSIPQDVAVVGFDGVDISQ-ITVPA-LTTVQQPSEQIGMKAVSLLLEQI 254 (285)
T ss_dssp HTTCCTTTTCEEECSBCCGGGG-TSSSC-CBEEECCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEEeCChHHHh-hcCCC-ceEEeCCHHHHHHHHHHHHHHHh
Confidence 665 378899999887542 12222 34444 55677777777766543
No 23
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.56 E-value=0.22 Score=44.66 Aligned_cols=160 Identities=12% Similarity=0.072 Sum_probs=87.2
Q ss_pred HHHHHHcCCcEEEEeCC-CchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCH-LSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CN-TaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++... .....++.++ ..++|++-+ ...+++++.+.|.+ |
T Consensus 65 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 135 (289)
T 2fep_A 65 LNTMLGKQVDGIVFMGGNITDEHVAEFK-RSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHT--------D 135 (289)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHH-HSSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHHTTCS--------S
T ss_pred HHHHHhCCCCEEEEecCCCCHHHHHHHH-hcCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------e
Confidence 45577789998887553 2334456664 346666543 34456777777664 9
Q ss_pred EEEEechh-h-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHH
Q 020005 218 IGVLAKNA-I-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 218 VGlLaT~~-T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L 281 (332)
|++++.+. . .+..-|.+.++++|+++ +.......+. -...++. ++.+ +.+. .......+++.+
T Consensus 136 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al 214 (289)
T 2fep_A 136 IAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDS-GLEALQHLMSLDKKPTAILSATDEMALGIIHAA 214 (289)
T ss_dssp EEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHH-HHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHH-HHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHH
Confidence 99998653 1 12233788899988754 2222111111 1112233 3332 2211 122334455566
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
.+.|. |.-|.|+...+... ...+. +..|+ +...+++.+++.....-
T Consensus 215 ~~~G~~vP~di~vvg~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~i 265 (289)
T 2fep_A 215 QDQGLSIPEDLDIIGFDNTRLSL-MVRPQ-LSTVVQPTYDIGAVAMRLLTKLM 265 (289)
T ss_dssp HHTTCCTTTTCEEEEEECCGGGT-SSSSC-CEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCeEEEEECChHHHh-hcCCc-eeEEeCCHHHHHHHHHHHHHHHh
Confidence 66653 77888888877532 12222 34444 56677777777766543
No 24
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=96.54 E-value=0.13 Score=46.46 Aligned_cols=210 Identities=11% Similarity=0.081 Sum_probs=113.3
Q ss_pred ccCeEEEEeCCC--hHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 79 QANTVGIVGGAS--VDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 79 ~~k~IGIiGGmG--p~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
+.++||++=... |..+-.||..+.+..... ....+++++.. .+.+.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~---- 56 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN-------------------------NMNDL---- 56 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC-------------------------SHHHH----
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC-------------------------CChHH----
Confidence 467899993211 555566888887776542 34555554410 11111
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec---------------------hHHHHHHHHHhcCCCCc
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV---------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I---------------------ve~t~~~l~~~g~k~~~ 211 (332)
-.+.++.|.+.++|.|++.... ....++.+++ .++|+|-+ ...+++++.+.|++
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--- 132 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDPIKQMLID-ESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVD--- 132 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHH-TTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCS---
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChHHHHHHHh-CCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcCCc---
Confidence 1233456778899988775432 2334555543 35555432 34566778888776
Q ss_pred CCCCceEEEEechhh-----hchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHH-HhcC----ChHH----HHHHHHH
Q 020005 212 AGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDA-LNRK----DVEG----ARNLLRI 276 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~-ik~g----~~~~----a~~~l~~ 276 (332)
|||+++.+.. .+..-|.+.++++|+++.. ......+. ....++. ++.+ ..+. .......
T Consensus 133 -----~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g 206 (295)
T 3hcw_A 133 -----ELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREV-ILNYMQNLHTRLKDPNIKQAIISLDAMLHLA 206 (295)
T ss_dssp -----EEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHH-HHHHHHHHHHHHTCTTSCEEEEESSHHHHHH
T ss_pred -----cEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEeccCCHHH-HHHHHHHHHhhcccCCCCcEEEECChHHHHH
Confidence 9999985432 1233478889999987632 11111111 1111222 2211 1111 1223344
Q ss_pred HHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 277 ALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 277 ~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+++.+.+.| -|.-|+|+...++..- ..+ .+..|+ +...+++.+++.....-
T Consensus 207 ~~~al~~~g~~vP~di~vig~D~~~~~~~-~~p-~lttv~~~~~~~g~~a~~~l~~~i 262 (295)
T 3hcw_A 207 ILSVLYELNIEIPKDVMTATFNDSYLTEI-ASP-PQTCIDIKPRMLGQQAGSAILNIL 262 (295)
T ss_dssp HHHHHHHTTCCTTTTEEEEEECCSHHHHT-SSS-CCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEeCChhHHhh-CCC-CeeEEEECHHHHHHHHHHHHHHHh
Confidence 555666666 4889999998874321 122 134444 56677777777776553
No 25
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=96.47 E-value=0.016 Score=52.69 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=66.4
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++|||++-.+.. ..+|++.++....+..+.-+. . +.++ .... ..+.++..+.+.+.+.
T Consensus 109 ~~rigVlaT~~t~--~~~~~~~l~~~g~~~~~~~v~-~-~~~~---------~~~l--------~~~~~~~~~~l~~~~~ 167 (245)
T 3qvl_A 109 ATRFSIVTTLPRT--LIIARHLLHQYGFHQHCAALH-A-IDLP---------VLAL--------EDGSGLAQEKVRERCI 167 (245)
T ss_dssp CSCEEEEESCGGG--HHHHHHHHHHHTCGGGEEEEE-E-CCSC---------GGGG--------GSSSSHHHHHHHHHHH
T ss_pred CCEEEEEEcchhH--HHHHHHHHHHcCCCCeEEEEe-C-CCCC---------HHHH--------cCCcHHHHHHHHHHHH
Confidence 4799999755543 478888887654331111111 1 1111 0000 1122334445555544
Q ss_pred H-HHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 160 F-LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 160 ~-Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
. +++.|+|.||+.|--...+.+.|++.+++|||+-.+++++.+...
T Consensus 168 ~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~~~~~l 214 (245)
T 3qvl_A 168 RALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVKMVESL 214 (245)
T ss_dssp HHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHHHHHHH
Confidence 4 456899999999986666789999999999999999999887664
No 26
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=96.44 E-value=0.23 Score=43.69 Aligned_cols=205 Identities=14% Similarity=0.102 Sum_probs=111.6
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.++||++=.- .+-.||..+.+...+. ....+++.+. ..+.+.. .+
T Consensus 2 s~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-------------------------~~~~~~~----~~ 49 (272)
T 3o74_A 2 TRTLGFILPD---LENPSYARIAKQLEQGARARGYQLLIASS-------------------------DDQPDSE----RQ 49 (272)
T ss_dssp CCEEEEEESC---TTCHHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTCHHHH----HH
T ss_pred ceEEEEEeCC---CcChhHHHHHHHHHHHHHHCCCEEEEEeC-------------------------CCCHHHH----HH
Confidence 5789998522 2344777777666532 4556665541 1122222 23
Q ss_pred HHHHHHHcCCcEEEEeCCC--chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHL--SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.|.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~------- 121 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPEDDSYRELQD-KGLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSSAPR------- 121 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCHHHHHHH-TTCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCCS-------
T ss_pred HHHHHHHcCCCEEEEecCccccHHHHHHHHH-cCCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHCCCc-------
Confidence 3456778899988876543 2345666654 36776644 34566777776654
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeEEe--cCccchhhchHHHH-HHHhcC--ChHH----HHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVL--PDKATMEHTLIPAL-DALNRK--DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~--P~~~~q~~~l~~~i-~~ik~g--~~~~----a~~~l~~~~~~L 281 (332)
||++++.... .+..-|.+.++++|+++.. ......+. -...+ +.+.++ +.+. .......+++.+
T Consensus 122 -~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al 199 (272)
T 3o74_A 122 -SIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSREC-GQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTL 199 (272)
T ss_dssp -EEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHH-HHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHH
T ss_pred -EEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCHHH-HHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHH
Confidence 9999975432 1233477888888986542 22111111 11112 223322 2221 123344555667
Q ss_pred HhCC---CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA---VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g---ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|..|.|+...+.... ..+ .+..|+ +...+++.+++.....
T Consensus 200 ~~~g~vp~di~vvg~d~~~~~~~-~~p-~lttv~~~~~~~g~~a~~~l~~~ 248 (272)
T 3o74_A 200 QARPVDSRQLQLGTFGDNQLLDF-LPL-PVNAMAQQHGQIAATALELALAA 248 (272)
T ss_dssp HTSCGGGCCCEEEEESCCGGGGT-SSS-CEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHcCCCccceEEEEeCChHHHHh-cCC-CceEEEeCHHHHHHHHHHHHHHH
Confidence 7777 5888999988875432 122 123343 4566777777776654
No 27
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=96.40 E-value=0.027 Score=51.67 Aligned_cols=109 Identities=12% Similarity=0.169 Sum_probs=68.8
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||--+...+ .+|++..+..... ..++....|.+-+.+ ..+ ..+.+...+.+.+.+
T Consensus 108 ~~~rIgVlaT~~T~~~-~~y~~~l~~~~~g--~~v~~~~~~~~v~~i-e~g--------------~~~~~~~~~~l~~~~ 169 (267)
T 2gzm_A 108 NTYHVGIIGTIGTVKS-GAYEEALKSINNR--VMVESLACPPFVELV-ESG--------------NFESEMAYEVVRETL 169 (267)
T ss_dssp SSCEEEEEECHHHHHH-THHHHHHHHHCTT--CEEEEEECTTHHHHH-HTT--------------CSSSHHHHHHHHHHH
T ss_pred CCCEEEEEEChHHhcc-HHHHHHHHHhCCC--CEEeccCCHHHHHHH-hCC--------------CCCCHHHHHHHHHHH
Confidence 4679999954333333 3677777655322 333322333322211 111 112234455566777
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
+.|.+.|+|.|++.|--...+.+++++.+ ++|+|+-.+++++++.+.
T Consensus 170 ~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~~ 218 (267)
T 2gzm_A 170 QPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTI 218 (267)
T ss_dssp HHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHHHHHHHHHH
Confidence 77888899999999976666788998877 899999999999876653
No 28
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=96.40 E-value=0.025 Score=52.23 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=69.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||--+...+ .+|++..+....+ ..++-...|...+.+..+ .-+.+...+.+.+.+
T Consensus 112 ~~~rIgVlaT~~T~~s-~~y~~~i~~~~~~--~~v~~~~~~~~v~~ve~g---------------~~~~~~~~~~l~~~l 173 (276)
T 2dwu_A 112 KKGKIGVIGTVGTIQS-NMYEKALHELDTY--LKVHSHACPTLATVVENR---------------LEDTAYVTQQVKQAL 173 (276)
T ss_dssp SSSEEEEEECHHHHHT-THHHHHHHHHCTT--CEEEEEECTTHHHHHHHS---------------TTCHHHHHHHHHHHH
T ss_pred CCCeEEEEeChhhhhh-HHHHHHHHHhCCC--CEEEeeeCHHHHHHHHcC---------------CcCCHHHHHHHHHHH
Confidence 4578999963333332 2677776554222 223222334332222111 112234555677777
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
+.|.+.|+|.|++.|--...+.+.+++.. ++|+|+-.+++++.+.+.
T Consensus 174 ~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs~~~~a~~~~~~ 222 (276)
T 2dwu_A 174 LPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTI 222 (276)
T ss_dssp HHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHHH
Confidence 78888999999999987666789999877 899999999998876653
No 29
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=96.39 E-value=0.21 Score=44.61 Aligned_cols=208 Identities=14% Similarity=0.160 Sum_probs=110.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=-- .+-.||..+.+...+. ....+++.+. ..+.+.. .
T Consensus 7 ~~~~Igvv~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-------------------------~~~~~~~----~ 54 (291)
T 3egc_A 7 RSNVVGLIVSD---IENVFFAEVASGVESEARHKGYSVLLANT-------------------------AEDIVRE----R 54 (291)
T ss_dssp CCCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTCHHHH----H
T ss_pred CCcEEEEEECC---CcchHHHHHHHHHHHHHHHCCCEEEEEeC-------------------------CCCHHHH----H
Confidence 45789998521 2345777776665532 4556665441 1122222 2
Q ss_pred HHHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.|.+.++|.|++.... ....++.+.+ .++|++-+ ...+++++.+.|.+
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~------- 126 (291)
T 3egc_A 55 EAVGQFFERRVDGLILAPSEGEHDYLRTELP-KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHT------- 126 (291)
T ss_dssp HHHHHHHHTTCSEEEECCCSSCCHHHHHSSC-TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHCCCCEEEEeCCCCChHHHHHhhc-cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC-------
Confidence 33456778899988876654 3344454433 47777654 34566778887765
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~~ 280 (332)
||++++.... .+..-|.+.++++|+++ +.......+. ....+ +.++.+. .+. .......+++.
T Consensus 127 -~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 204 (291)
T 3egc_A 127 -RIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADN-GRDGAIKVLTGADRPTALLTSSHRITEGAMQA 204 (291)
T ss_dssp -SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------C-CHHHHHHHHTC-CCCSEEEESSHHHHHHHHHH
T ss_pred -EEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhH-HHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence 9999976431 12333778888888763 2222111111 11112 2333322 111 12223334455
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+.+.| -|.-|+|+...+... ...+. +..|+ +...+++.+++......+
T Consensus 205 l~~~g~~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~av~~l~~~i~ 257 (291)
T 3egc_A 205 LNVLGLRYGPDVEIVSFDNLPWMA-FLDPP-LPVVEQPTRRIGQEAMRMLIHMIE 257 (291)
T ss_dssp HHHHTCCBTTTBEEEEESCCGGGG-GSSSC-CCEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCceEEEEecCchhHh-hcCCC-ceEEEECHHHHHHHHHHHHHHHHh
Confidence 55545 478899998888632 11221 23333 566777877877766533
No 30
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=96.37 E-value=0.21 Score=46.09 Aligned_cols=160 Identities=12% Similarity=0.112 Sum_probs=86.7
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++..... ....+.+++..++|++-+ ...+++++.+.|++
T Consensus 107 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 178 (340)
T 1qpz_A 107 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR-------- 178 (340)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCCCSSSEEEECCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCCCCCCCEEEECHHHHHHHHHHHHHHCCCC--------
Confidence 4567788999988854432 344566654346665532 34566778887765
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeEE----ecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L 281 (332)
||++++.+.. .+..-|.+.++++|+++. .......+. -...+.. +..+ ..+. .......+++.+
T Consensus 179 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al 257 (340)
T 1qpz_A 179 EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPES-GYRAMQQILSQPHRPTAVFCGGDIMAMGALCAA 257 (340)
T ss_dssp CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHH-HHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHH-HHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHH
Confidence 9999975421 122337888998887642 221111111 1112222 3332 2211 122333455666
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|.-|.|+...+.. ....+ .+..|+ +...+++.+++.....
T Consensus 258 ~~~G~~vP~disvig~D~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~~ 307 (340)
T 1qpz_A 258 DEMGLRVPQDVSLIGYDNVRNA-RYFTP-ALTTIHQPKDSLGETAFNMLLDR 307 (340)
T ss_dssp HHTTCCTTTTCEEEEEECCTTG-GGSSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCeEEEeECCchHh-hccCC-ceeEEecCHHHHHHHHHHHHHHH
Confidence 6666 37788898887762 22222 234444 5666777777766554
No 31
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.34 E-value=0.17 Score=45.07 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=84.5
Q ss_pred HHHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.|.+.++|.|++..... ....+.+++..++|++-+ ...+++++.+.|.+
T Consensus 55 ~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~------- 127 (289)
T 1dbq_A 55 YLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR------- 127 (289)
T ss_dssp HHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCSSSCEEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCccCcCCEEEeCcHHHHHHHHHHHHHCCCC-------
Confidence 34567788999888755443 345566654356776543 23455677776654
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeEE----ecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~ 280 (332)
||++++.... .+..-|.+.++++|+++. .......+. ....++. ++.+ +.+. .......+++.
T Consensus 128 -~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 205 (289)
T 1dbq_A 128 -EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPES-GYRAMQQILSQPHRPTAVFCGGDIMAMGALCA 205 (289)
T ss_dssp -SEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHH-HHHHHHHHHTSSSCCSEEEESCHHHHHHHHHH
T ss_pred -eEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHH
Confidence 9999975421 122337788888887642 121111111 1112222 3332 2211 12233345556
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.| -|.-|.|+...+.. ....+ .+..|+ +...+++.+++.....
T Consensus 206 l~~~G~~vP~di~vvg~d~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~~ 256 (289)
T 1dbq_A 206 ADEMGLRVPQDVSLIGYDNVRNA-RYFTP-ALTTIHQPKDSLGETAFNMLLDR 256 (289)
T ss_dssp HHHTTCCTTTTCEEEEEECCTTG-GGSSS-CCEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCceEEEeeCCchHh-ccCCC-ccccccCCHHHHHHHHHHHHHHH
Confidence 66665 36778888777652 22222 123443 4556666666666544
No 32
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=96.31 E-value=0.023 Score=52.41 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=69.0
Q ss_pred hccCeEEEEeCCChHHHH--HHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 78 NQANTVGIVGGASVDSTL--NLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 78 ~~~k~IGIiGGmGp~AT~--~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+..++|||||= .+|+ .+|++..+....+ ..+.-...|.+-+.+.. + ..+.+...+.+.
T Consensus 109 ~~~~~IGVLaT---~~Ti~s~~y~~~l~~~~~~--~~V~~~~~~~lV~~vE~-g--------------~~~~~~~~~~l~ 168 (268)
T 3out_A 109 DNLNTVGVIAT---PATINSNAYALQIHKKNPN--IEVYSNPCGLFVSMIEE-G--------------FVSGHIVELVAK 168 (268)
T ss_dssp TTCSEEEEEEC---HHHHHHTHHHHHHHHHCTT--SEEEEEECTTHHHHHHT-T--------------CCSSHHHHHHHH
T ss_pred ccCCeEEEEec---CcccccHHHHHHHHHhCCC--CEEecCCChHHHHHHHc-C--------------CcCCHHHHHHHH
Confidence 35679999953 3455 4787777655322 22222223333222211 1 112233445566
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
+.++.|.+.|+|.||+.|--.-.+.+.+++..++|+|+-.+++++.+++.
T Consensus 169 ~~l~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~viD~~~~~a~~~~~~ 218 (268)
T 3out_A 169 EYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKLIDPSLQASKMLYSL 218 (268)
T ss_dssp HHHGGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEEECCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCChHHHHHHHhcCCCCceechHHHHHHHHHHH
Confidence 66777888899999999975555678898888999999999999887663
No 33
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.27 E-value=0.16 Score=45.72 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=112.5
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++= . .+-.||..+.+...+. ....+++.+.. .+. +. .
T Consensus 11 ~~~~Igvi~---~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~----------~~~-------------~~-------~ 56 (289)
T 3k9c_A 11 SSRLLGVVF---E-LQQPFHGDLVEQIYAAATRRGYDVMLSAVA----------PSR-------------AE-------K 56 (289)
T ss_dssp --CEEEEEE---E-TTCHHHHHHHHHHHHHHHHTTCEEEEEEEB----------TTB-------------CH-------H
T ss_pred CCCEEEEEE---e-cCCchHHHHHHHHHHHHHHCCCEEEEEeCC----------CCH-------------HH-------H
Confidence 457899995 2 2445777777766532 45566655400 000 00 1
Q ss_pred HHHHHHHHcCCcEEEEeC-CCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~C-NTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.|.+.++|.|++.. +.....++.+.+ ++|++-+ ...+++++.+.|.+
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~--~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------- 127 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTDELGALAD--RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTELGHR------- 127 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHHHHHHHHT--TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHhCCCCEEEEECCCCCHHHHHHHHc--CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC-------
Confidence 233456778999877765 444455666654 7887654 34566778887765
Q ss_pred ceEEEEechhhh----chhhHHHHHHhcCCeE---EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAIL----TAGFYQEKLQHEGFEV---VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 216 ~rVGlLaT~~T~----~s~lY~~~l~~~Gi~v---v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
||++++.+... +..-|.+.++++|+++ +.......+. -...+. .++.+. .+. .......+++.+.
T Consensus 128 -~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 205 (289)
T 3k9c_A 128 -NIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETE-GAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLV 205 (289)
T ss_dssp -SEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHH-HHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHH
T ss_pred -cEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHH-HHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHH
Confidence 99999865421 2233788899988762 3332222221 111222 233322 111 1223344556666
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+.| -|.-|.|+...+... ...+. +..|+ +...+++.+++.....-+
T Consensus 206 ~~g~~vP~di~vig~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~i~ 256 (289)
T 3k9c_A 206 RSGRDVPADISVVGYDDSRLAR-IPHVQ-MTTISQDATHMAEAAVDGALAQIS 256 (289)
T ss_dssp HTTCCTTTTCEEEEEECCTTTT-CTTTC-CEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEEECCHHHHh-cCCCC-cceEecCHHHHHHHHHHHHHHHhc
Confidence 666 378899988887432 22221 23443 566777777777766533
No 34
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=96.26 E-value=0.24 Score=43.90 Aligned_cols=203 Identities=9% Similarity=0.086 Sum_probs=105.5
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=.. .+-.||..+.+..... ....+++.+. ..+.+.. .
T Consensus 7 ~~~~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-------------------------~~~~~~~----~ 54 (277)
T 3e61_A 7 KSKLIGLLLPD---MSNPFFTLIARGVEDVALAHGYQVLIGNS-------------------------DNDIKKA----Q 54 (277)
T ss_dssp ---CEEEEESC---TTSHHHHHHHHHHHHHHHHTTCCEEEEEC-------------------------TTCHHHH----H
T ss_pred CCCEEEEEECC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeC-------------------------CCCHHHH----H
Confidence 35689998521 2345777777666532 4556665441 1122222 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH-HHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD-EVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d-~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
+.++.|.+.++|.|++...+ ...++ .+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~-~~~~~~~l~~-~~iPvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 124 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN-ENIIENTLTD-HHIPFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGKGK--------N 124 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG-HHHHHHHHHH-C-CCEEEGGGCC---------HHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHHHhCCCCEEEEecCC-hHHHHHHHHc-CCCCEEEEeccCCCCCeEEechHHHHHHHHHHHHHCCCC--------e
Confidence 33456778899999887633 33355 5554 48898865 34466677777765 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeEE--ecCccchhhchHHHHHHHhcC-ChH----HHHHHHHHHHHHHHhCC
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEVV--LPDKATMEHTLIPALDALNRK-DVE----GARNLLRIALQVLLVRA 285 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~vv--~P~~~~q~~~l~~~i~~ik~g-~~~----~a~~~l~~~~~~L~~~g 285 (332)
|++++.... .+..-|.+.++++|+++. .......+ ..++.+..+ +.+ ........+++.+.+.|
T Consensus 125 i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g 200 (277)
T 3e61_A 125 VLIVHENLLIDAFHQRVQGIKYILDQQRIDYKMLEATLLDND----KKFIDLIKELSIDSIICSNDLLAINVLGIVQRYH 200 (277)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHC---CEEEEEGGGGGSH----HHHHHHHHHHTCCEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCCCccceecCCCCHH----HHHHHhhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 999974321 122337788888888764 22221111 112223221 111 11223334555566665
Q ss_pred ----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 286 ----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 286 ----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
-|.-|+|+...+.... ..+. +..|+ +...+++.+++......
T Consensus 201 ~~vP~di~vig~d~~~~~~~-~~p~-lttv~~~~~~~g~~av~~l~~~i 247 (277)
T 3e61_A 201 FKVPAEIQIIGYDNIPFSEM-TYPQ-ITTIDQSAYHLGEIAVSQLLGLN 247 (277)
T ss_dssp CCTTTTCEEECSBCCGGGGT-SSSC-CBEEECCHHHHHHHHHHHHC---
T ss_pred CCCCCceEEEeeCCchHHhh-CCCC-ceEEeCCHHHHHHHHHHHHHHHh
Confidence 4788999998885432 1221 23343 56677787787776553
No 35
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.24 E-value=0.15 Score=45.97 Aligned_cols=214 Identities=10% Similarity=0.038 Sum_probs=107.8
Q ss_pred hhccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 77 LNQANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 77 ~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
|++.++||++--. .+-.||..+.+...+. ....+++..+. ..+.+...
T Consensus 1 ~s~~~~I~~i~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~------------------------~~~~~~~~-- 51 (305)
T 3g1w_A 1 MSLNETYMMITFQ---SGMDYWKRCLKGFEDAAQALNVTVEYRGAA------------------------QYDIQEQI-- 51 (305)
T ss_dssp ----CEEEEEESS---TTSTHHHHHHHHHHHHHHHHTCEEEEEECS------------------------SSCHHHHH--
T ss_pred CCCCceEEEEEcc---CCChHHHHHHHHHHHHHHHcCCEEEEeCCC------------------------cCCHHHHH--
Confidence 5567899998632 2234677776655432 34555552211 11222222
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMK 208 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k 208 (332)
+.++.|.+.++|.|++....... .++.+++ .++|++-+ ...+++++.+. |.+
T Consensus 52 --~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~ 128 (305)
T 3g1w_A 52 --TVLEQAIAKNPAGIAISAIDPVELTDTINKAVD-AGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEG 128 (305)
T ss_dssp --HHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCE
T ss_pred --HHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCc
Confidence 33455777899988876544332 3444443 36666543 34566777777 654
Q ss_pred CCcCCCCceEEEEechhhh----chhhHHHHHHhcCCeE--E--ecCccchhhchHHHH-HHHhcC-ChHH----HHHHH
Q 020005 209 PLEAGSPLRIGVLAKNAIL----TAGFYQEKLQHEGFEV--V--LPDKATMEHTLIPAL-DALNRK-DVEG----ARNLL 274 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~----~s~lY~~~l~~~Gi~v--v--~P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l 274 (332)
||++++.+... +..-|++.++++|.++ + .......+. ....+ +.+..+ +.+. .....
T Consensus 129 --------~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a 199 (305)
T 3g1w_A 129 --------EVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLH-SRRVAHQLLEDYPNLAGIFATEANGG 199 (305)
T ss_dssp --------EEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCTTEEEEEESSHHHH
T ss_pred --------EEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHH-HHHHHHHHHHhCCCceEEEECCCcch
Confidence 99999865421 2233777888776543 2 122111111 11112 223332 2111 12333
Q ss_pred HHHHHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhhccC
Q 020005 275 RIALQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSAEKG 331 (332)
Q Consensus 275 ~~~~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~~~~ 331 (332)
..+++.+.+.|. |.-|.|+...+..+... .+.....|+ +...+++.+++.....-+|
T Consensus 200 ~g~~~al~~~g~~~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~av~~l~~~i~g 260 (305)
T 3g1w_A 200 VGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFHLHHG 260 (305)
T ss_dssp HHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTTSSCEEEEECHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCceEEEEecChHHHHHHHHHHHHHHhcC
Confidence 455566666675 78889998877221111 121113333 5666777777777665443
No 36
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=96.19 E-value=0.041 Score=50.66 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=68.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||--+...+ .+|++..+.... ...++....|.+-+.+.. ...+.+...+.+.+.+
T Consensus 109 ~~~rIgVlaT~~T~~s-~~y~~~i~~~~~--~~~v~~~~~~~~v~~ve~---------------g~~~~~~~~~~l~~~l 170 (272)
T 1zuw_A 109 DNQHIGVIGTENTIKS-NAYEEALLALNP--DLKVENLACPLLVPFVES---------------GKFLDQTADEIVKTSL 170 (272)
T ss_dssp SSSEEEEEECHHHHHT-THHHHHHHHHCT--TCEEEEEECTTHHHHHTS---------------CCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhh-hHHHHHHHHhCC--CCEEEeccCHHHHHHHHC---------------CCCCCHHHHHHHHHHH
Confidence 4679999964333332 356666655422 223332233332221111 1112244556677777
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE 204 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~ 204 (332)
+.|.+.|+|.|++.|--.....+.+++.. ++|+|+-.+++++.+.+
T Consensus 171 ~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~ 218 (272)
T 1zuw_A 171 YPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVST 218 (272)
T ss_dssp HHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence 88888899999999986666788898876 89999999999887654
No 37
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=96.17 E-value=0.39 Score=44.21 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=90.5
Q ss_pred HHHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
.++.|.+.++|.|++..... ...++.++ ..++|++-+ ...+++++.+.|++ |
T Consensus 110 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~-~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~ 180 (339)
T 3h5o_A 110 LLRAYLQHRPDGVLITGLSHAEPFERILS-QHALPVVYMMDLADDGRCCVGFSQEDAGAAITRHLLSRGKR--------R 180 (339)
T ss_dssp HHHHHHTTCCSEEEEECSCCCTTHHHHHH-HTTCCEEEEESCCSSSCCEEECCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHHcCCCCEEEEeCCCCCHHHHHHHh-cCCCCEEEEeecCCCCCeEEEECHHHHHHHHHHHHHHCCCC--------e
Confidence 34567788999887765433 23445554 347887754 34566788888775 9
Q ss_pred EEEEechhh----hchhhHHHHHHhcCC-----eEEecCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI----LTAGFYQEKLQHEGF-----EVVLPDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T----~~s~lY~~~l~~~Gi-----~vv~P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~~L~ 282 (332)
||+++.+.. .+..-|.+.++++|+ .++.+.....+. -...++ .++.+ ..+. .......+++.+.
T Consensus 181 I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~ 259 (339)
T 3h5o_A 181 IGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQM-GADMLDRALAERPDCDALFCCNDDLAIGALARSQ 259 (339)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHH-HHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHH
Confidence 999986431 122237788888887 233333222211 111122 23332 1111 1233344556666
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+.| -|.-|.|+...+..... .+. +..|+ +...+++.+++.....-+
T Consensus 260 ~~G~~vP~disvvgfD~~~~~~~~-~p~-lttv~~~~~~~g~~Av~~L~~~i~ 310 (339)
T 3h5o_A 260 QLGIAVPERLAIAGFNDLQPAAWC-TPP-LTTVATPRRDIGVHAAKALLQLID 310 (339)
T ss_dssp HTTCCTTTTCEEECSBCCGGGTTS-SSC-CBEEECCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCCCCEEEEEECCHHHHhcc-CCC-ceEEEeCHHHHHHHHHHHHHHHhc
Confidence 666 47889999988854321 221 23343 567777887877766543
No 38
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=96.15 E-value=0.22 Score=45.00 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=91.3
Q ss_pred HHHHHHHcCCcEEEEeCC-Cchh-hHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCH-LSHI-WHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CN-TaH~-~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++... .... .++.+.+ ++|+|-+ ...+++++.+.|.+
T Consensus 63 ~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-------- 132 (303)
T 3kke_A 63 LSRLVSEGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLITLGHS-------- 132 (303)
T ss_dssp HHHHHHSCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHhCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 345677889998877553 3344 6677776 7887754 34566778887765
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH------HhcCC-hHH----HHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA------LNRKD-VEG----ARNLLRI 276 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~------ik~g~-~~~----a~~~l~~ 276 (332)
||++++.+.. .+..-|.+.++++|+++ +.......+. -...+.. ++.+. .+. .......
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g 211 (303)
T 3kke_A 133 RIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADA-GSAALNTLYRGANLGKPDGPTAVVVASVNAAVG 211 (303)
T ss_dssp SEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHH-HHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHH
T ss_pred eEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHH-HHHHHHHhcchhhhcCCCCCcEEEECCHHHHHH
Confidence 9999975432 12333788899988764 2222211111 1112233 33332 111 1223344
Q ss_pred HHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 277 ALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 277 ~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+++.+.+.| -|.-|.|+...+..... .+ .+..|+ +...+++.+++.....-+
T Consensus 212 ~~~al~~~G~~vP~di~vig~D~~~~~~~~-~p-~lttv~~~~~~~g~~av~~L~~~i~ 268 (303)
T 3kke_A 212 ALSTALRLGLRVPEDLSIVGINTTWVSDTV-YP-ALTTVRLPLQRLGEVAADVLMEHLG 268 (303)
T ss_dssp HHHHHHHTTCCTTTTCEEEEESCCHHHHHS-SS-CCEEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCceEEEEEcChhHhhcC-CC-CeeEEecCHHHHHHHHHHHHHHHhc
Confidence 555666666 37889999887743211 12 123343 567777887877766533
No 39
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.15 E-value=0.41 Score=43.98 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=113.4
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=.- +.-+-.||..+.+..... ....+++++. ..+.+.. .
T Consensus 60 ~~~~Igvi~~~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-------------------------~~~~~~~----~ 109 (338)
T 3dbi_A 60 STQTLGLVVTN-TLYHGIYFSELLFHAARMAEEKGRQLLLADG-------------------------KHSAEEE----R 109 (338)
T ss_dssp CCSEEEEEECT-TTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTSHHHH----H
T ss_pred CCCEEEEEecC-CcccChhHHHHHHHHHHHHHHCCCEEEEEeC-------------------------CCChHHH----H
Confidence 35789998422 112334777776665532 4555665541 1112211 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.|.+.++|.|++..... ...+.++.+..++|++-+ ...+++++.+.|++
T Consensus 110 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------- 182 (338)
T 3dbi_A 110 QAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ------- 182 (338)
T ss_dssp HHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCCCC-------
Confidence 234567788999988865432 232444445556776644 34566778887765
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~ 280 (332)
||++++.+.. .+..-|.+.++++|+++ +.......+. -...++ .++.+. .+. .......+++.
T Consensus 183 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~a 260 (338)
T 3dbi_A 183 -EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPAS-GAEGVEMLLERGAKFSALVASNDDMAIGAMKA 260 (338)
T ss_dssp -SEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHH-HHHHHHHHHHTTCCCSEEEESSHHHHHHHHHH
T ss_pred -EEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHH-HHHHHHHHHcCCCCCeEEEECChHHHHHHHHH
Confidence 9999975421 12233788899998764 2222211111 111122 233322 111 12233345566
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+.+.| -|.-|.|+...++..-. .+. +..|+ +...+++.+++......+
T Consensus 261 l~~~G~~vP~di~vvg~D~~~~~~~~-~p~-lttv~~~~~~~g~~a~~~l~~~i~ 313 (338)
T 3dbi_A 261 LHERGVAVPEQVSVIGFDDIAIAPYT-VPA-LSSVKIPVTEMIQEIIGRLIFMLD 313 (338)
T ss_dssp HHHTTCCTTTTCEEEEESCCTTGGGS-SSC-CEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCeEEEEECChHHHhhc-CCc-ceEEecCHHHHHHHHHHHHHHHhc
Confidence 66666 37889999888754221 221 23443 667778887777766533
No 40
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.08 E-value=0.22 Score=44.66 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=86.8
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 57 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 127 (287)
T 3bbl_A 57 RDLIRSGNVDGFVLSSINYNDPRVQFLLK-QKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHR--------R 127 (287)
T ss_dssp HHHHHTTCCSEEEECSCCTTCHHHHHHHH-TTCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHTCC--------C
T ss_pred HHHHHcCCCCEEEEeecCCCcHHHHHHHh-cCCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCCCC--------e
Confidence 345677889988775432 2344566554 46776543 34456777777765 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHh-cC--ChHH----HHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALN-RK--DVEG----ARNLLRIALQV 280 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik-~g--~~~~----a~~~l~~~~~~ 280 (332)
|++++.... .+..-|.+.++++|+++ +.......+. -...++ .++ .+ +.+. .......+++.
T Consensus 128 I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~a 206 (287)
T 3bbl_A 128 IAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEV-GRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAA 206 (287)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHH-HHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHH
T ss_pred EEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHH-HHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHH
Confidence 999975421 12234788898888754 2222111111 111233 344 33 2221 12333445566
Q ss_pred HHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.|. |.-|.|+...+... ...+ .+..|+ +...+++.+++.....
T Consensus 207 l~~~G~~vP~di~vig~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 257 (287)
T 3bbl_A 207 ARERGLTIGTDLAIIGFDDAPMVQ-YLFP-PLSSVRQPIAEAGRKCIELLVAI 257 (287)
T ss_dssp HHHTTCCBTTTBEEEEESCCTTGG-GSSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCEEEEEECCchHhh-ccCC-CCceEcCCHHHHHHHHHHHHHHH
Confidence 666663 67888888877531 1122 234444 5567777777776654
No 41
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=96.05 E-value=0.021 Score=53.22 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=68.2
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||--+...+ .+|++..+.... ...+.-...|.+.+.+..+ .-+.+...+.+.+.+
T Consensus 129 ~~~rIgVLaT~~T~~s-~~y~~~l~~~~~--~~~v~~~~~~~lv~~ve~g---------------~~~~~~~~~~l~~~l 190 (290)
T 2vvt_A 129 KNNKIGVIGTLGTIKS-ASYEIAIKSKAP--AIEVTSLACPKFVPIVESN---------------QYRSSVAKKIVAETL 190 (290)
T ss_dssp SSSEEEEEECHHHHHT-THHHHHHHTTCT--TSEEEEEECTTHHHHHHTT---------------CTTSHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHhhhh-HHHHHHHHHhCC--CCEEEeccCHHHHHHHHcC---------------CCCCHHHHHHHHHHH
Confidence 4578999964333332 267777655421 2333322334333222111 112234455566677
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
+.|.+.|+|.|++.|--.-.+.+++++.. ++|+|+-.+++++.+.+.
T Consensus 191 ~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~~ 239 (290)
T 2vvt_A 191 QALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSML 239 (290)
T ss_dssp GGGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHHH
Confidence 77878899999999976666788998876 899999999998876653
No 42
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.04 E-value=0.29 Score=43.85 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=85.6
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 60 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 130 (290)
T 2rgy_A 60 VRFLIGRDCDGVVVISHDLHDEDLDELHR-MHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHGHR--------K 130 (290)
T ss_dssp HHHHHHTTCSEEEECCSSSCHHHHHHHHH-HCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhcCccEEEEecCCCCHHHHHHHhh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCc--------e
Confidence 4557788999988865432 344566654 46776643 23456677777654 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~~L~ 282 (332)
||+++.... .+..-|.+.++++|+++ +.......+. -...++ .++++ +.+. .......+++.+.
T Consensus 131 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 209 (290)
T 2rgy_A 131 LAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEG-GYAATCQLLESKAPFTGLFCANDTMAVSALARFQ 209 (290)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHH-HHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhH-HHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHH
Confidence 999976421 12233778888888753 2222111110 111122 23322 2211 1223334555666
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.| -|.-|.|+...+... ...+. +..|+ +...+++.+++.....
T Consensus 210 ~~G~~vP~di~vvg~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~ 258 (290)
T 2rgy_A 210 QLGISVPGDVSVIGYDDDYSAA-YAAPA-LTSVHIPTAELTQNAVRWLINQ 258 (290)
T ss_dssp HTTCCTTTTCEEEEEECCTTST-TSSSC-CEEEECCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEEeCCchHhc-ccCCC-ceEEeCCHHHHHHHHHHHHHHH
Confidence 666 367888887777532 22222 34444 5566777777766554
No 43
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=96.00 E-value=0.15 Score=46.43 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech-----------------------------HHHHHHHHHh--
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-----------------------------ECVAKELKEA-- 205 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv-----------------------------e~t~~~l~~~-- 205 (332)
.++.|.+.++|.|++....+...+. ....++|++-+. ..+++++.+.
T Consensus 61 ~~~~l~~~~vDgII~~~~~~~~~~~--~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~P 138 (302)
T 2qh8_A 61 IARQFVGENPDVLVGIATPTAQALV--SATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILP 138 (302)
T ss_dssp HHHHHHHTCCSEEEEESHHHHHHHH--HHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHST
T ss_pred HHHHHHhCCCCEEEECChHHHHHHH--hcCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECCcCHHHHHHHHHHhCC
Confidence 4466888999998876532211121 224578877442 2345778776
Q ss_pred cCCCCcCCCCceEEEEechhh----hchhhHHHHHHhcCCeEEe
Q 020005 206 NMKPLEAGSPLRIGVLAKNAI----LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 206 g~k~~~~~~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~vv~ 245 (332)
|++ |||+++.+.. .+..-|++.++++|+++..
T Consensus 139 g~~--------~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~ 174 (302)
T 2qh8_A 139 NVK--------SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVE 174 (302)
T ss_dssp TCC--------EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCc--------EEEEEecCCCcchHHHHHHHHHHHHHcCCEEEE
Confidence 665 9999986532 1234588889999998753
No 44
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=95.99 E-value=0.77 Score=40.59 Aligned_cols=209 Identities=9% Similarity=0.044 Sum_probs=111.1
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=. ..+-.||..+.+...+. ....+++.+. ..+.+.. .
T Consensus 6 ~s~~Igvi~~---~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-------------------------~~~~~~~----~ 53 (276)
T 3jy6_A 6 SSKLIAVIVA---NIDDYFSTELFKGISSILESRGYIGVLFDA-------------------------NADIERE----K 53 (276)
T ss_dssp CCCEEEEEES---CTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-------------------------TTCHHHH----H
T ss_pred CCcEEEEEeC---CCCchHHHHHHHHHHHHHHHCCCEEEEEeC-------------------------CCCHHHH----H
Confidence 4678999852 12445777777666532 3555655441 1112211 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
+.++.|.+.++|.|++........++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 54 ~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-------- 124 (276)
T 3jy6_A 54 TLLRAIGSRGFDGLILQSFSNPQTVQEILH-QQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQ-------- 124 (276)
T ss_dssp HHHHHHHTTTCSEEEEESSCCHHHHHHHHT-TSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCC--------
T ss_pred HHHHHHHhCCCCEEEEecCCcHHHHHHHHH-CCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------
Confidence 334567788999887766554445566554 36776644 33456677776665
Q ss_pred eEEEEechhh-h-----chhhHHHHHHhcCCeEEecCcc-chhhchHHHHHHHhcCC-hHH----HHHHHHHHHHHHHhC
Q 020005 217 RIGVLAKNAI-L-----TAGFYQEKLQHEGFEVVLPDKA-TMEHTLIPALDALNRKD-VEG----ARNLLRIALQVLLVR 284 (332)
Q Consensus 217 rVGlLaT~~T-~-----~s~lY~~~l~~~Gi~vv~P~~~-~q~~~l~~~i~~ik~g~-~~~----a~~~l~~~~~~L~~~ 284 (332)
||++++.+.. . +..-|.+.+++++. ++..... ..+.......+.+..+. .+. .......+++.+.+.
T Consensus 125 ~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 203 (276)
T 3jy6_A 125 HVVVLTSELELSRTRQERYRGILAAAQDVDV-LEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIIS 203 (276)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-EEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHS
T ss_pred eEEEEecCCCCCchHHHHHHHHHHHHHhCCc-EEEeccccCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHc
Confidence 9999987543 1 11224555555554 3333210 11111111223344322 111 123334455666666
Q ss_pred C----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhccC
Q 020005 285 A----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEKG 331 (332)
Q Consensus 285 g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~~ 331 (332)
| -|.-|+|+...+... ...+. +..|+ +...+++.+++......+|
T Consensus 204 g~~vP~di~vig~d~~~~~~-~~~p~-lttv~~~~~~~g~~av~~l~~~i~~ 253 (276)
T 3jy6_A 204 GLIDNQTVTATGFADTDFIR-RMEPK-LTLITQNPFLMGASSAEIMLRQLAG 253 (276)
T ss_dssp SSCCSSSEEEEEBCCCSTTT-CC--C-CCEEECCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEEECChHHhh-cCCCc-eEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 6 478899999887532 22221 23444 5677888888877665443
No 45
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=95.98 E-value=0.45 Score=42.25 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=84.1
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++.... ....++.+++..++|++-+ ...+++++.+.|.+ |
T Consensus 70 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~G~~--------~ 141 (296)
T 3brq_A 70 IQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ--------E 141 (296)
T ss_dssp HHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHHHHHHHHHHCCCc--------e
Confidence 455667899988875443 3345566654256776643 23455667776654 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeEE----ecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEVV----LPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~vv----~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L~ 282 (332)
|++++.... .+..-|.+.++++|+++. .......+. -...+.. ++.+ +.+. .......+++.+.
T Consensus 142 I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 220 (296)
T 3brq_A 142 IAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPAS-GAEGVEMLLERGAKFSALVASNDDMAIGAMKALH 220 (296)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHH-HHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHH
Confidence 999986421 122337788888887642 222111111 1112222 3322 1111 1122233444454
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.| -|.-|+|+...+... ...+ .+..|+ +...+++.+++.....
T Consensus 221 ~~g~~vP~di~vvg~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 269 (296)
T 3brq_A 221 ERGVAVPEQVSVIGFDDIAIAP-YTVP-ALSSVKIPVTEMIQEIIGRLIFM 269 (296)
T ss_dssp HHTCCTTTTCEEEEESCCTTGG-GSSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEeecCchhhh-ccCC-CceeeeCCHHHHHHHHHHHHHHH
Confidence 444 477888887776431 1122 134444 5667777777776654
No 46
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=95.88 E-value=0.042 Score=51.01 Aligned_cols=109 Identities=7% Similarity=0.034 Sum_probs=67.6
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHH-HHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI-VENLRRK 157 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i-~~~l~~~ 157 (332)
..++|||||--+... ..+|++..+....+ ..++....|.+-+.+.. + ..+.+.. .+.+.+.
T Consensus 127 ~~~rIgVLaT~~T~~-~~~y~~~l~~~~~~--~~v~~~~~~~~v~~ie~-g--------------~~~~~~~~~~~l~~~ 188 (286)
T 2jfq_A 127 RNQNVLVLGTEGTIK-SEAYRTHIKRINPH--VEVHGVACPGFVPLVEQ-M--------------RYSDPTITSIVIHQT 188 (286)
T ss_dssp SSSEEEEEECHHHHH-HTHHHHHHHHHCTT--CEEEEEECTTHHHHHHT-T--------------CTTCHHHHHHHHHHH
T ss_pred CCCEEEEEeChHHhc-chHHHHHHHHhCCC--CEEEecCCHHHHHHHHc-C--------------CCCCchhHHHHHHHH
Confidence 457899996333333 33677666554222 23332233333222111 1 1111233 5556677
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
++.|.+.|+|.|++.|--...+.+++++.+ ++|+|+-.+++++.+.+.
T Consensus 189 ~~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~~ 238 (286)
T 2jfq_A 189 LKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSAL 238 (286)
T ss_dssp HGGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHHHHHHHHHH
Confidence 777878899999999976666789999877 899999999998876653
No 47
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=95.84 E-value=0.77 Score=42.03 Aligned_cols=205 Identities=14% Similarity=0.131 Sum_probs=108.6
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=.- -+-.||..+.+..... ....+++.+. ..+.+.. .
T Consensus 62 ~~~~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-------------------------~~~~~~~----~ 109 (332)
T 2o20_A 62 RTTTVGVILPT---ITSTYFAAITRGVDDIASMYKYNMILANS-------------------------DNDVEKE----E 109 (332)
T ss_dssp CCCEEEEEESC---TTCHHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTCHHHH----H
T ss_pred CCCEEEEEeCC---CCCcHHHHHHHHHHHHHHHcCCEEEEEEC-------------------------CCChHHH----H
Confidence 45789998521 2234777777665532 4555555441 1122211 2
Q ss_pred HHHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.|.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|++
T Consensus 110 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------- 181 (332)
T 2o20_A 110 KVLETFLSKQVDGIVYMGSSLDEKIRTSLKN-SRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNK------- 181 (332)
T ss_dssp HHHHHHHHTTCSEEEECSSCCCHHHHHHHHH-HCCCEEEESCCCTTSCSCEEECCHHHHHHHHHHHHHHTTCS-------
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEccccCCCCCCEEEeChHHHHHHHHHHHHHCCCC-------
Confidence 23445667899988876543 2344556643 35665533 34566777777765
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCChHH----HHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKDVEG----ARNLLRIALQVL 281 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~~~~----a~~~l~~~~~~L 281 (332)
||++++.+.. .+..-|.+.++++|+++ +.......+. -...+. .++. ..+. .......+++.+
T Consensus 182 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~-~~~ai~~~~d~~A~g~~~al 258 (332)
T 2o20_A 182 -KIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQ-GKALAERLLER-GATSAVVSHDTVAVGLLSAM 258 (332)
T ss_dssp -SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHH-HHHHHHHHHHT-TCCEEEESCHHHHHHHHHHH
T ss_pred -eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHH-HHHHHHHHhcc-CCCEEEECChHHHHHHHHHH
Confidence 9999986531 12233788899988754 2222111110 111122 2332 2211 122233455566
Q ss_pred HhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.| -|.-|.|+...+... ...+. +..|+ +...+++.+++.....
T Consensus 259 ~~~G~~vP~disvig~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~ 308 (332)
T 2o20_A 259 MDKGVKVPEDFEIISGANSPITQ-YTYPT-LTSVNQPLYDLGAVAMRLLTKL 308 (332)
T ss_dssp HHTTCCTTTTCEEEESSCCGGGG-SBSSC-CEEEECCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccCEEEEEeCChHHHh-hCCCc-eEEEeeCHHHHHHHHHHHHHHH
Confidence 6666 378899998888532 11222 34444 5667777777776654
No 48
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=95.81 E-value=0.29 Score=45.20 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=108.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=.- .+-.||..+.+..... ....+++++... + +. -.
T Consensus 63 ~~~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-------------------------~~----~~ 109 (333)
T 3jvd_A 63 RSALVGVIVPD---LSNEYYSESLQTIQQDLKAAGYQMLVAEANS-V-------------------------QA----QD 109 (333)
T ss_dssp -CCEEEEEESC---SSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-H-------------------------HH----HH
T ss_pred CCCEEEEEeCC---CcChHHHHHHHHHHHHHHHCCCEEEEECCCC-h-------------------------HH----HH
Confidence 35789988521 2345777777666532 345566554111 1 11 12
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
+.++.|.+.++|.|++... ++.+. ..++|++-+ ...+++++.+.|++
T Consensus 110 ~~~~~l~~~~vdGiIi~~~-----~~~~~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 175 (333)
T 3jvd_A 110 VVMESLISIQAAGIIHVPV-----VGSIA-PEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSGM-------- 175 (333)
T ss_dssp HHHHHHHHHTCSEEEECCC-----TTCCC--CCSCEEEECC----CCSCEEEECHHHHHHHHHHHHCCSSSC--------
T ss_pred HHHHHHHhCCCCEEEEcch-----HHHHh-hCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------
Confidence 3345677889999888765 22221 235666544 23344555555544
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeEEec-CccchhhchHHHH-HHHhcCChHH----HHHHHHHHHHHHHhCC
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEVVLP-DKATMEHTLIPAL-DALNRKDVEG----ARNLLRIALQVLLVRA 285 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~P-~~~~q~~~l~~~i-~~ik~g~~~~----a~~~l~~~~~~L~~~g 285 (332)
|||+++.+.. .+..-|.+.++++|++.+.. .....+. -...+ +.+..+..+. .......+++.+.+.|
T Consensus 176 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~~G 254 (333)
T 3jvd_A 176 NIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVES-GEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLN 254 (333)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHH-HHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHCCCCEEEecCCCCHHH-HHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHHcC
Confidence 9999986532 12333788899999985444 3222221 11112 2344443211 1223334556666666
Q ss_pred ----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 286 ----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 286 ----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
-|.-|+|+...++.. ...+. +..|+ +...+++.+++.....-
T Consensus 255 ~~vP~disvig~D~~~~~~-~~~p~-lttv~~~~~~~g~~Av~~L~~~i 301 (333)
T 3jvd_A 255 VRVPHDVVIGGYDDPEWYS-FVGAG-ITTFVPPHEEMGKEAVRLLVDLI 301 (333)
T ss_dssp CCTTTTCEEEEESCCGGGG-GSTTS-CEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECChHHHH-hcCCC-ceEEecCHHHHHHHHHHHHHHHh
Confidence 378899999888432 22222 23443 66777888887776653
No 49
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=95.56 E-value=0.41 Score=42.15 Aligned_cols=160 Identities=12% Similarity=0.081 Sum_probs=84.9
Q ss_pred HHHHHHcCCcEEEEeC-CCchhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~C-NTaH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++.. ......++.+++ .++|++-+ ...+++++.+.|++ |
T Consensus 52 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~ 122 (275)
T 3d8u_A 52 LSTFLESRPAGVVLFGSEHSQRTHQLLEA-SNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFK--------N 122 (275)
T ss_dssp HHHHHTSCCCCEEEESSCCCHHHHHHHHH-HTCCEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTTTCC--------C
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------e
Confidence 4456778899776644 333445566654 36776643 34455666666654 9
Q ss_pred EEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHHH
Q 020005 218 IGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 218 VGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
|++++.+.. .+..-|.+.++++|+++ +.......+. -...+. .++++. .+. .......+++.+.
T Consensus 123 i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 201 (275)
T 3d8u_A 123 VGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQL-GAEGLAKLLLRDSSLNALVCSHEEIAIGALFECH 201 (275)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHH-HHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 999986421 12334778888888643 2222111111 111122 233321 111 1223344555666
Q ss_pred hCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 283 VRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 283 ~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+.| -|.-|.|+...+... ...+ .+..|+ +...+++.+++.....-
T Consensus 202 ~~g~~vP~di~vvg~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~i 251 (275)
T 3d8u_A 202 RRVLKVPTDIAIICLEGSSMGE-HAYP-SLTSAEFDYERMGTKAAEKLLHAI 251 (275)
T ss_dssp HTTCCTTTTCEEEESSCCHHHH-TSSS-CCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEecCCchHhh-hcCC-CcceecCCHHHHHHHHHHHHHHHh
Confidence 665 367888988877432 1122 123443 55677777777766553
No 50
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.54 E-value=0.37 Score=45.99 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=101.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.++||++= | .+-.||..+.+..... ....+++.+. .+. . +
T Consensus 25 s~~Igvv~---~-~~~~f~~~l~~gi~~~a~~~g~~~~i~~~-----------~~~---------------~-------~ 67 (412)
T 4fe7_A 25 RHRITLLF---N-ANKAYDRQVVEGVGEYLQASQSEWDIFIE-----------EDF---------------R-------A 67 (412)
T ss_dssp CEEEEEEC---C-TTSHHHHHHHHHHHHHHHHHTCCEEEEEC-----------C-C---------------C--------
T ss_pred CceEEEEe---C-CcchhhHHHHHHHHHHHHhcCCCeEEEec-----------CCc---------------c-------c
Confidence 46899995 3 4556887777766532 3455555441 000 0 1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
.++.|.+.++|.|++.... ...++.+++ .++|+|-+ ...+++++.+.|.+
T Consensus 68 ~i~~l~~~~vDGiIi~~~~-~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r----- 140 (412)
T 4fe7_A 68 RIDKIKDWLGDGVIADFDD-KQIEQALAD-VDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN----- 140 (412)
T ss_dssp -------CCCSEEEEETTC-HHHHHHHTT-CCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCC-----
T ss_pred hhhhHhcCCCCEEEEecCC-hHHHHHHhh-CCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCc-----
Confidence 1245677899999884432 233455543 46777643 33466778887765
Q ss_pred CCceEEEEechhhh-------chhhHHHHHHhcCCeEEe--cCcc---chhhchHHHH-HHHhcC-ChHH----HHHHHH
Q 020005 214 SPLRIGVLAKNAIL-------TAGFYQEKLQHEGFEVVL--PDKA---TMEHTLIPAL-DALNRK-DVEG----ARNLLR 275 (332)
Q Consensus 214 ~~~rVGlLaT~~T~-------~s~lY~~~l~~~Gi~vv~--P~~~---~q~~~l~~~i-~~ik~g-~~~~----a~~~l~ 275 (332)
+|++++.+... +..-|.+.++++|++... .... ..+. ....+ +.+..+ ..+. ......
T Consensus 141 ---~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~aI~~~nD~~A~ 216 (412)
T 4fe7_A 141 ---RFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQH-AQNRLADWLQTLPPQTGIIAVTDARAR 216 (412)
T ss_dssp ---EEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHH-HHHHHHHHHHHSCTTEEEEESSHHHHH
T ss_pred ---eEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhh-HHHHHHHHHHhCCCCeEEEEEecHHHH
Confidence 99999865321 223377888888875432 1111 1110 11112 223322 2111 112223
Q ss_pred HHHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCcee-chHHHHHHHHHHHHHhh
Q 020005 276 IALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCI-DPMDALARSTIKWVKSA 328 (332)
Q Consensus 276 ~~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvI-D~~~~lA~a~v~~a~~~ 328 (332)
.+++.+.+.| -|.-|+|....++..-...+. +..| -+...+++.+++.....
T Consensus 217 g~~~al~~~G~~vP~disvig~D~~~~~~~~~~p~-lttv~~~~~~~g~~a~~~l~~~ 273 (412)
T 4fe7_A 217 HILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVA-LSSVAQGARQMGYQAAKLLHRL 273 (412)
T ss_dssp HHHHHHHHHTCCTTTTSEEEESSCCSCSSSCCSSC-CEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCceEEEEeecchhhhhhccCCc-eeeecccHHHHHHHHHHHHHHH
Confidence 3444455444 488999998877543211221 2333 35566677777766554
No 51
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=95.50 E-value=0.018 Score=51.84 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=66.2
Q ss_pred eEEEEechhhhch-hhHHHHHHhc----C---C-eEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCC
Q 020005 217 RIGVLAKNAILTA-GFYQEKLQHE----G---F-EVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVN 287 (332)
Q Consensus 217 rVGlLaT~~T~~s-~lY~~~l~~~----G---i-~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad 287 (332)
+|||||--+...+ .||++..+.. | . .++.-+.+ +-+.-+.+..|+.++....+.++++.|.+.|+|
T Consensus 4 ~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~ 78 (231)
T 3ojc_A 4 ILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVD-----FHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAE 78 (231)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECC-----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCC-----hhhHHHHHHCCChhHHHHHHHHHHHHHHhcCCC
Confidence 8999997776555 5666554321 2 1 23321111 111123455677777788899999999999999
Q ss_pred EEEECCCCcccCCCCCC-CCCCceechHHHHHHHHHH
Q 020005 288 TVILASDDMQDLLPPDD-PLLKKCIDPMDALARSTIK 323 (332)
Q Consensus 288 ~VILGCTElpli~~~~~-~~~ipvID~~~~lA~a~v~ 323 (332)
.||++|.=.+..++... ...+|+|...+..++++..
T Consensus 79 ~iviaCNTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~ 115 (231)
T 3ojc_A 79 VIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQ 115 (231)
T ss_dssp EEEECSSGGGGGHHHHHHHHCSCBCCHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHhCCCCEeccHHHHHHHHHH
Confidence 99999987765554321 2357999988888877664
No 52
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.47 E-value=0.62 Score=42.92 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=88.4
Q ss_pred HHHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|++
T Consensus 116 ~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 186 (344)
T 3kjx_A 116 VLYEMLSWRPSGVIIAGLEHSEAARAMLDA-AGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQAILKAGYR-------- 186 (344)
T ss_dssp HHHHHHTTCCSEEEEECSCCCHHHHHHHHH-CSSCEEEEEECSSCCSSEEEEECHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHhCCCCEEEEECCCCCHHHHHHHHh-CCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 34567788999888765432 233444443 46776654 33566778888876
Q ss_pred eEEEEechh--h--h--chhhHHHHHHhcCCeE----EecCccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHHHH
Q 020005 217 RIGVLAKNA--I--L--TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQV 280 (332)
Q Consensus 217 rVGlLaT~~--T--~--~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~~ 280 (332)
|||+++.+. . . +..-|.+.++++|+++ +.......+. -...+ +.++.+ +.+. .......+++.
T Consensus 187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~a 265 (344)
T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAK-GREMTQAMLERSPDLDFLYYSNDMIAAGGLLY 265 (344)
T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHH-HHHHHHHHHHHSTTCCEEEESSHHHHHHHHHH
T ss_pred eEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHH-HHHHHHHHHhcCCCCCEEEECCHHHHHHHHHH
Confidence 999998653 1 1 2233788899888753 2222211111 11112 223332 2111 12233445556
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+.+.| -|.-|.|+...++..- ..+. +..|+ +...+++.+++.....-
T Consensus 266 l~~~g~~vP~disvvg~D~~~~~~~-~~p~-lttv~~~~~~~g~~av~~l~~~i 317 (344)
T 3kjx_A 266 LLEQGIDIPGQIGLAGFNNVELLQG-LPRK-LATMDACRLEIGRKAAEIIAKRL 317 (344)
T ss_dssp HHHTTCCTTTTCEEECSBCCGGGGG-SSSC-CBEEBCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCceEEEEECChHHHhc-cCCC-ccEEeCCHHHHHHHHHHHHHHHh
Confidence 66666 4788999998875421 1221 23444 56777777777766543
No 53
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=95.46 E-value=0.061 Score=47.60 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=42.2
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCchhh--HHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 154 LRRKRVFLEKA--GARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 154 l~~~~~~Le~~--Gad~IvI~CNTaH~~--~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
+.+.++.|.+. |||+|++.|--...+ .+++++.+++|+++-..+++.++.+.
T Consensus 158 ~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids~~~~a~~~l~~ 213 (223)
T 2dgd_A 158 IYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAAAMWEALNK 213 (223)
T ss_dssp HHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEhHHHHHHHHHHH
Confidence 34455567777 999999999988874 78899889999999999998776653
No 54
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.37 E-value=1.4 Score=39.06 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=88.6
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec------------------hHHHHHHHHH--hcCCCCcCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV------------------SECVAKELKE--ANMKPLEAG 213 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I------------------ve~t~~~l~~--~g~k~~~~~ 213 (332)
.++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+ .|.+
T Consensus 53 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~----- 126 (291)
T 3l49_A 53 QIQTLIAQKPDAIIEQLGNLDVLNPWLQKIND-AGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKG----- 126 (291)
T ss_dssp HHHHHHHHCCSEEEEESSCHHHHHHHHHHHHH-TTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCE-----
T ss_pred HHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCc-----
Confidence 345677889999887654422 23444443 36777654 4456677777 6654
Q ss_pred CCceEEEEechh-h----hchhhHHHHHHhc-CCeEEecCc-----cchhhchHHHH-HHHhcC----ChHH----HHHH
Q 020005 214 SPLRIGVLAKNA-I----LTAGFYQEKLQHE-GFEVVLPDK-----ATMEHTLIPAL-DALNRK----DVEG----ARNL 273 (332)
Q Consensus 214 ~~~rVGlLaT~~-T----~~s~lY~~~l~~~-Gi~vv~P~~-----~~q~~~l~~~i-~~ik~g----~~~~----a~~~ 273 (332)
||++++... . .+..-|.+.++++ |++++.+.. ...+. -...+ +.+... +.+. ....
T Consensus 127 ---~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ai~~~~d~~ 202 (291)
T 3l49_A 127 ---NVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQS-AYSNVTDMLTKYPNEGDVGAIWACWDVP 202 (291)
T ss_dssp ---EEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHH-HHHHHHHHHHHCCSTTSCCEEEESSHHH
T ss_pred ---eEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHH-HHHHHHHHHHhCCCcCCcCEEEECCCch
Confidence 999997432 1 1223378888888 677543321 11111 11112 223332 2221 1233
Q ss_pred HHHHHHHHHhCCC-CEEEECCCCcccCC----CCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 274 LRIALQVLLVRAV-NTVILASDDMQDLL----PPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 274 l~~~~~~L~~~ga-d~VILGCTElpli~----~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
...+++.+.+.|. |.-|.|+-..+... ....+. +..|+ +...+++.+++.....-+
T Consensus 203 a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~-lttv~~~~~~~g~~av~~l~~~i~ 264 (291)
T 3l49_A 203 MIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPA-GAVAAQQPSEIGKLAVQNVARHLA 264 (291)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCE-EEEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCe-EEEEecCHHHHHHHHHHHHHHHhc
Confidence 4455666777776 88899988887642 111221 23333 456677777777665543
No 55
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=95.32 E-value=1.4 Score=40.80 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=85.7
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 115 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 185 (348)
T 3bil_A 115 LEFLTSHGVDGIICVPNEECANQLEDLQK-QGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHNNAL-------- 185 (348)
T ss_dssp HHHHHHTTCSCEEECCCGGGHHHHHHHHH-C-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------
Confidence 4456678899877755432 234555543 35665432 34566777777765
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCC--eEEecCccchhhchHHHHH-HHhcCCh---HHHHHHHHHHHHHHHhCC
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGF--EVVLPDKATMEHTLIPALD-ALNRKDV---EGARNLLRIALQVLLVRA 285 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi--~vv~P~~~~q~~~l~~~i~-~ik~g~~---~~a~~~l~~~~~~L~~~g 285 (332)
||++++.+.. .+..-|.+.++++|+ +++.......+. -...++ .++.+.. -........+++.+.+.|
T Consensus 186 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v~~~~~~~~~-~~~~~~~ll~~~~~ai~~~nD~~A~g~~~al~~~G 264 (348)
T 3bil_A 186 PIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLVFLGGYEQSV-GFEGATKLLDQGAKTLFAGDSMMTIGVIEACHKAG 264 (348)
T ss_dssp SEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEEECCCSSHHH-HHHHHHHHHHTTCSEEEESSHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEEEcCCCCHHH-HHHHHHHHHcCCCCEEEEcChHHHHHHHHHHHHcC
Confidence 9999986421 122337788888886 333332211111 111122 2333321 001223344555666666
Q ss_pred ----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 286 ----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 286 ----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
-|.-|.|+...+... ...+. +..|+ +...+++.+++.....
T Consensus 265 ~~vP~disvvG~D~~~~~~-~~~p~-lttv~~~~~~~g~~Av~~l~~~ 310 (348)
T 3bil_A 265 LVIGKDVSVIGFDTHPLFA-LQPHP-LTVIDQNVEQLAQRAVSILTEL 310 (348)
T ss_dssp CCBTTTBEEEEESCCGGGG-GSSSC-CCEEECCHHHHHHHHHHHHHCC
T ss_pred CCCCCCeEEEEeCCcHHHH-hcCCC-ceEEEcCHHHHHHHHHHHHHHH
Confidence 478899998887532 12222 23444 6677888888877654
No 56
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.30 E-value=0.93 Score=40.17 Aligned_cols=160 Identities=12% Similarity=0.049 Sum_probs=86.4
Q ss_pred HHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
.++.+.+.++|.|++.... ....++.+.+ .++|++-+ ...+++++.+.|.+
T Consensus 61 ~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~------- 132 (292)
T 3k4h_A 61 VVKMVQGRQIGGIILLYSRENDRIIQYLHE-QNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHK------- 132 (292)
T ss_dssp HHHHHHTTCCCEEEESCCBTTCHHHHHHHH-TTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHcCCCCEEEEeCCCCChHHHHHHHH-CCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc-------
Confidence 3456777899987775433 3344555543 36666533 34566778887765
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHH-HHHhcC-ChHH----HHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRIALQV 280 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~~~~~ 280 (332)
||++++.... .+..-|.+.++++|+++ +.......+. -...+ +.++.+ +.+. .......+++.
T Consensus 133 -~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 210 (292)
T 3k4h_A 133 -QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRES-GQQAVEELMGLQQPPTAIMATDDLIGLGVLSA 210 (292)
T ss_dssp -CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHH-HHHHHHHHHTSSSCCSEEEESSHHHHHHHHHH
T ss_pred -eEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHH-HHHHHHHHHcCCCCCcEEEEcChHHHHHHHHH
Confidence 9999985432 12334778899888753 2222111111 11122 234433 2211 12233345556
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.| -|.-|+|+...+.... ..+ .+..|+ +...+++.+++...+.
T Consensus 211 l~~~g~~vP~di~vig~d~~~~~~~-~~p-~lttv~~~~~~~g~~av~~l~~~ 261 (292)
T 3k4h_A 211 LSKKGFVVPKDVSIVSFNNALLSEI-ASP-PLSTVDVNIYQLGYEAAKALVDK 261 (292)
T ss_dssp HHHTTCCTTTTCEEEEESCCHHHHH-SSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEEEecCcchhhc-cCC-CceEEecCHHHHHHHHHHHHHHH
Confidence 66665 4788899888774321 111 123333 4566777777776654
No 57
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=95.19 E-value=0.35 Score=43.12 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=104.2
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++-.. +-.||..+.+..... ....+++.+. ..+.+.. .
T Consensus 7 ~~~~Igvi~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~-------------------------~~~~~~~----~ 53 (288)
T 2qu7_A 7 RSNIIAFIVPD----QNPFFTEVLTEISHECQKHHLHVAVASS-------------------------EENEDKQ----Q 53 (288)
T ss_dssp CEEEEEEEESS----CCHHHHHHHHHHHHHHGGGTCEEEEEEC-------------------------TTCHHHH----H
T ss_pred CCCEEEEEECC----CCchHHHHHHHHHHHHHHCCCEEEEEeC-------------------------CCCHHHH----H
Confidence 34689998633 455777777666531 3445554431 1122222 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.|.+.++|.|++...... ..++.+ .++|++-+ ...+++++.+.|.+
T Consensus 54 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~G~~------- 123 (288)
T 2qu7_A 54 DLIETFVSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYIATKRVLESTCK------- 123 (288)
T ss_dssp HHHHHHHHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHHHHHHHHTSSCC-------
T ss_pred HHHHHHHHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC-------
Confidence 2345667789998887654322 333444 35665533 33455666665554
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeE----Ee--cCcc----chhhchHHHHH-HHhcCChHH----HHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VL--PDKA----TMEHTLIPALD-ALNRKDVEG----ARNLLR 275 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~--P~~~----~q~~~l~~~i~-~ik~g~~~~----a~~~l~ 275 (332)
||++++.... .+..-|.+.++++|+++ +. .... ..+. -...+. .+++ +.+. ......
T Consensus 124 -~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~l~~-~~~ai~~~~d~~a~ 200 (288)
T 2qu7_A 124 -EVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYS-GYEATKTLLSK-GIKGIVATNHLLLL 200 (288)
T ss_dssp -CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHH-HHHHHHHHHHT-TCCEEEECSHHHHH
T ss_pred -cEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHH-HHHHHHHHHhc-CCCEEEECCcHHHH
Confidence 9999985421 12334778888888764 22 2221 1111 111122 2332 2211 122233
Q ss_pred HHHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 276 IALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 276 ~~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
.+++.+.+.| -|.-|+|+...+... ...+. +..|+ +...+++.+++.....-
T Consensus 201 g~~~al~~~g~~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~i 257 (288)
T 2qu7_A 201 GALQAIKESEKEIKKDVIIVGFDDSYWNE-IYTPK-LTVISQPVKEMGQVAAKMIYKLI 257 (288)
T ss_dssp HHHHHHHHSSCCBTTTBEEEEESCCTHHH-HSSSC-CCEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCceEEEEeCChHHHh-hcCCC-ccEEecCHHHHHHHHHHHHHHHH
Confidence 4455666666 367788888777431 11121 23443 56667777777766543
No 58
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=95.12 E-value=0.56 Score=43.87 Aligned_cols=79 Identities=9% Similarity=0.035 Sum_probs=48.6
Q ss_pred HHHHH-HcCCcEEEEeCCCchh-hHHHHhhhCCCCeeec----------------------hHHHHHHHHHh-cCCCCcC
Q 020005 158 RVFLE-KAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV----------------------SECVAKELKEA-NMKPLEA 212 (332)
Q Consensus 158 ~~~Le-~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I----------------------ve~t~~~l~~~-g~k~~~~ 212 (332)
++.|. +.++++|+.+| +... ..-.+.+..++|+|.. ....++.+.+. |.+
T Consensus 68 ~~~li~~~~V~~iiG~~-s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~---- 142 (391)
T 3eaf_A 68 YREFRDRYGVIAIIGWG-TADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQG---- 142 (391)
T ss_dssp HHHHHHTTCCSEEEECC-HHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHHHHHCSE----
T ss_pred HHHHHhhcCcEEEEEcC-cHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHHHhcCCC----
Confidence 34455 77999988843 3222 2333444557887753 23345666664 665
Q ss_pred CCCceEEEEec-hhh---hchhhHHHHHHhcCCeEEe
Q 020005 213 GSPLRIGVLAK-NAI---LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 213 ~~~~rVGlLaT-~~T---~~s~lY~~~l~~~Gi~vv~ 245 (332)
||+++.. ... -...-|++.+++.|++++.
T Consensus 143 ----~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~ 175 (391)
T 3eaf_A 143 ----KLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVG 175 (391)
T ss_dssp ----EEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEE
T ss_pred ----EEEEEEecCChhHHHHHHHHHHHHHHcCCceee
Confidence 9999987 322 2344578888888988753
No 59
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.08 E-value=1.1 Score=41.50 Aligned_cols=162 Identities=10% Similarity=0.050 Sum_probs=87.6
Q ss_pred HHHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++..... ...++.+.+ .++|++-+ ...+++++.+.|++
T Consensus 118 ~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r-------- 188 (355)
T 3e3m_A 118 LVETMLRRRPEAMVLSYDGHTEQTIRLLQR-ASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLARGFR-------- 188 (355)
T ss_dssp HHHHHHHTCCSEEEEECSCCCHHHHHHHHH-CCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHhCCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------
Confidence 34567788999888765432 233444443 47777654 23466778887765
Q ss_pred eEEEEechhh------hchhhHHHHHHhcCCeE----EecC-ccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHH
Q 020005 217 RIGVLAKNAI------LTAGFYQEKLQHEGFEV----VLPD-KATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQ 279 (332)
Q Consensus 217 rVGlLaT~~T------~~s~lY~~~l~~~Gi~v----v~P~-~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~ 279 (332)
|||+++.+.. .+..-|.+.++++|+++ .... ....+. -...+ +.++.+. .+. .......+++
T Consensus 189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~ 267 (355)
T 3e3m_A 189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIED-GVAAAELILQEYPDTDCIFCVSDMPAFGLLS 267 (355)
T ss_dssp SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHH
T ss_pred eEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHH-HHHHHHHHHcCCCCCcEEEECChHHHHHHHH
Confidence 9999986421 12334788899988752 2211 111110 11112 2233221 111 1222233445
Q ss_pred HHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 280 VLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 280 ~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
.+.+.| -|.-|.|+...++..- ..+. +..|+ +...+++.+++.....-+
T Consensus 268 al~~~G~~vP~disvigfD~~~~~~~-~~p~-lttv~~~~~~~g~~A~~~l~~~i~ 321 (355)
T 3e3m_A 268 RLKSIGVAVPEQVSVVGFGNFEVSRF-ASPE-ISTVRVDPIAIGRETGSLILRLLD 321 (355)
T ss_dssp HHHHHTCCTTTTCEEECSSCCHHHHH-SSSC-CBEEECCHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCceEEEEECChHHHhc-cCCC-ceEEecCHHHHHHHHHHHHHHHhc
Confidence 555555 4888999998875321 1121 23444 667788888887766543
No 60
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.01 E-value=0.85 Score=40.87 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=112.5
Q ss_pred ccCeEEEEeCCCh-HHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHH
Q 020005 79 QANTVGIVGGASV-DSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (332)
Q Consensus 79 ~~k~IGIiGGmGp-~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (332)
+.++||++=-..+ ..+-.||..+.+..... ....+++.+... . ...
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~----------------------~~~------- 54 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-G----------------------EKY------- 54 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-T----------------------CCC-------
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h----------------------hhH-------
Confidence 4578998842110 22445777777666532 456666654100 0 000
Q ss_pred HHHHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGS 214 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~ 214 (332)
.+..+.|.+.++|.|++.... ....++.+.+ .++|++-+ ...+++++.+.|.+
T Consensus 55 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------ 127 (294)
T 3qk7_A 55 QSLIHLVETRRVDALIVAHTQPEDFRLQYLQK-QNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQ------ 127 (294)
T ss_dssp HHHHHHHHHTCCSEEEECSCCSSCHHHHHHHH-TTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCc------
Confidence 123355777899988876543 3344555554 36776654 34566778887765
Q ss_pred CceEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHH
Q 020005 215 PLRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQ 279 (332)
Q Consensus 215 ~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~ 279 (332)
||++++.+.. .+..-|.+.++++|+++ +.......+. -...+ +.++.+. .+. .......+++
T Consensus 128 --~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~ 204 (294)
T 3qk7_A 128 --RIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPG-GYLAASRLLALEVPPTAIITDCNMLGDGVAS 204 (294)
T ss_dssp --CEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHH-HHHHHHHHHHSSSCCSEEEESSHHHHHHHHH
T ss_pred --eEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHH-HHHHHHHHHcCCCCCcEEEECCHHHHHHHHH
Confidence 9999976532 12334788899888763 2222111111 11112 2333322 111 1233344556
Q ss_pred HHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hH-HHHHHHHHHHHHhhc
Q 020005 280 VLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PM-DALARSTIKWVKSAE 329 (332)
Q Consensus 280 ~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~-~~lA~a~v~~a~~~~ 329 (332)
.+.+.| -|.-|.|+...+... ...+ .+..|+ +. ..+++.+++.....-
T Consensus 205 al~~~G~~vP~di~vig~D~~~~~~-~~~p-~lttv~~~~~~~~g~~av~~L~~~i 258 (294)
T 3qk7_A 205 ALDKAGLLGGEGISLIAYDGLPDDS-LLDI-AVTPIVQNTRTSVGKQIASMICDLL 258 (294)
T ss_dssp HHHHTTCSSTTSCEEEEETCSCTTC-SCCS-CCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCceEEEeecCccHHh-hcCC-CceeEecCcHHHHHHHHHHHHHHHh
Confidence 666666 378899999888632 2222 234444 45 577777777766553
No 61
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=95.00 E-value=0.082 Score=48.68 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCcEEEEe-CCCchhh--HHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 154 LRRKRVFLEKAGARCIVMP-CHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~-CNTaH~~--~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
+.+.++.|...|||+|++. |--...+ .+++++.+++|||+-..+++.++.+.
T Consensus 196 l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg~PVids~~a~a~~~l~~ 250 (273)
T 2xed_A 196 VMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFGIPVLSAATAGAYSILRS 250 (273)
T ss_dssp HHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhCCCEEcHHHHHHHHHHHH
Confidence 4455667777899999999 9888874 78899989999999999998776654
No 62
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=94.95 E-value=0.31 Score=42.59 Aligned_cols=158 Identities=9% Similarity=0.026 Sum_probs=83.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
++.|.+.++|.|++....... .+.+++ .++|++-+ ...+++++.+.|++ ||++
T Consensus 51 ~~~l~~~~vdgiI~~~~~~~~-~~~l~~-~~~pvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~I~~ 120 (255)
T 1byk_A 51 LGVLKRRNIDGVVLFGFTGIT-EEMLAH-WQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHR--------NISY 120 (255)
T ss_dssp HHHHHTTTCCEEEEECCTTCC-TTTSGG-GSSSEEEESSCCSSCEEEEECHHHHHHHHHHHHHHTTCC--------CEEE
T ss_pred HHHHHhcCCCEEEEecCcccc-HHHHHh-cCCCEEEEccccCCCCEEEEccHHHHHHHHHHHHHcCCC--------eEEE
Confidence 456778899987775432111 123332 35676643 44566778887765 9999
Q ss_pred Eech--h--h--hchhhHHHHHHhcCCeEE-ecCccchhhchHHHHHHHhcCChHH----HHHHHHHHHHHHHhCCC-CE
Q 020005 221 LAKN--A--I--LTAGFYQEKLQHEGFEVV-LPDKATMEHTLIPALDALNRKDVEG----ARNLLRIALQVLLVRAV-NT 288 (332)
Q Consensus 221 LaT~--~--T--~~s~lY~~~l~~~Gi~vv-~P~~~~q~~~l~~~i~~ik~g~~~~----a~~~l~~~~~~L~~~ga-d~ 288 (332)
++.. . + .+..-|.+.++++|+++. .......+. -...+..+-..+.+. .......+++.+.+.|. |.
T Consensus 121 i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ai~~~~d~~A~g~~~al~~~g~~di 199 (255)
T 1byk_A 121 LGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQ-GYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTL 199 (255)
T ss_dssp ECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEECCCSCHHH-HHHHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCCSC
T ss_pred EecCCCCcccHHHHHHHHHHHHHHcCCCcceeecCCccch-HHHHHHHHhcCCCCEEEEeChHHHHHHHHHHHHcCCCcE
Confidence 9853 2 1 122337888999887532 221111110 001111111122111 12233445556666664 78
Q ss_pred EEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 289 VILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 289 VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
-|.|+...+... ...+ .+..|+ +...+++.+++...+.
T Consensus 200 ~vig~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 238 (255)
T 1byk_A 200 QLASVGNTPLMK-FLHP-EIVTVDPGYAEAGRQAACQLIAQ 238 (255)
T ss_dssp EEEEECCCHHHH-HHCT-TSEEEBCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCchhhh-ccCC-CcceEecCHHHHHHHHHHHHHHH
Confidence 888988877531 1112 234454 4566777777776554
No 63
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=94.95 E-value=0.1 Score=48.16 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=66.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||=-|... ..+|++..+....+ ..+.....|.+-+.+.. + .-+.+...+.+.+.+
T Consensus 110 ~~~~IGVLaT~~Ti~-s~~y~~~i~~~~~~--~~v~~~~~~~lV~~vE~-g--------------~~~~~~~~~~l~~~l 171 (269)
T 3ist_A 110 RNNKIGVLGTLGTVE-SMAYPTALKGLNRR--VEVDSLACPKFVSVVES-G--------------EYKSAIAKKVVAESL 171 (269)
T ss_dssp SSSEEEEEECHHHHH-HTHHHHHHHHHCTT--CEEEEEECHHHHHHHHT-T--------------CTTSHHHHHHHHHHH
T ss_pred CCCeEEEEeccchhh-HHHHHHHHHHhCCC--CEEeccCCHHHHHHHHc-C--------------CCCCHHHHHHHHHHH
Confidence 467999996433222 24777776654222 22222223332222211 1 111223455566667
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE 204 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~ 204 (332)
+.|.+.|+|.|++.|-=.-.+.+.+++.. ++|+|+-.+++++.+++
T Consensus 172 ~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~ 219 (269)
T 3ist_A 172 LPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSA 219 (269)
T ss_dssp GGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTSEEECTHHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence 77888899999999975555578888865 69999999999988765
No 64
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=94.81 E-value=1 Score=41.20 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec-------------------------hHHHHHHHHHh-cCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------------SECVAKELKEA-NMKP 209 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I-------------------------ve~t~~~l~~~-g~k~ 209 (332)
.++.|.+.|+++|+.|..+.... ...+.+..++|+|.. ....++++.+. |.+
T Consensus 61 ~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~- 139 (356)
T 3ipc_A 61 VANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDA- 139 (356)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCC-
Confidence 34456668999988876654432 344555668888862 22345556665 665
Q ss_pred CcCCCCceEEEEechhh---hchhhHHHHHHhcCCeEE
Q 020005 210 LEAGSPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv 244 (332)
||++++.+.. -...-|++.+++.|++++
T Consensus 140 -------~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (356)
T 3ipc_A 140 -------KVAIIHDKTPYGQGLADETKKAANAAGVTEV 170 (356)
T ss_dssp -------CEEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred -------EEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 9999987432 223457888899998763
No 65
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=94.76 E-value=1.5 Score=40.37 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=69.6
Q ss_pred HHHHHHc-CCcEEEEeCCCchhh-HHHHhhhCCCCeeech------------------------HHHHHHHHHh-cCCCC
Q 020005 158 RVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS------------------------ECVAKELKEA-NMKPL 210 (332)
Q Consensus 158 ~~~Le~~-Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv------------------------e~t~~~l~~~-g~k~~ 210 (332)
++.|.+. ++++|+-+..+.... ...+.+..++|+|... ...++.+.+. |.+
T Consensus 73 ~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~-- 150 (366)
T 3td9_A 73 AARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAK-- 150 (366)
T ss_dssp HHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCCC--
T ss_pred HHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCc--
Confidence 3445555 599998776654322 3445556688887652 2344555443 554
Q ss_pred cCCCCceEEEEec-h--hh-hchhhHHHHHHhcCCeEEe---cCccchhhchHHHHHHHhcCChH-----HHHHHHHHHH
Q 020005 211 EAGSPLRIGVLAK-N--AI-LTAGFYQEKLQHEGFEVVL---PDKATMEHTLIPALDALNRKDVE-----GARNLLRIAL 278 (332)
Q Consensus 211 ~~~~~~rVGlLaT-~--~T-~~s~lY~~~l~~~Gi~vv~---P~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~ 278 (332)
||+++.. . .. -...-|++.+++.|++++. +.. .. .+...+..++....+ ........++
T Consensus 151 ------~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~-~~--d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~ 221 (366)
T 3td9_A 151 ------RVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSG-DQ--DFSAQLSVAMSFNPDAIYITGYYPEIALIS 221 (366)
T ss_dssp ------EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTT-CC--CCHHHHHHHHHTCCSEEEECSCHHHHHHHH
T ss_pred ------EEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCC-Cc--cHHHHHHHHHhcCCCEEEEccchhHHHHHH
Confidence 9999953 2 21 1234578889999998763 211 11 122234455432211 1122334455
Q ss_pred HHHHhCCCCEEEECCCC
Q 020005 279 QVLLVRAVNTVILASDD 295 (332)
Q Consensus 279 ~~L~~~gad~VILGCTE 295 (332)
+.+.+.|.+.-++|...
T Consensus 222 ~~~~~~g~~~~~~~~~~ 238 (366)
T 3td9_A 222 RQARQLGFTGYILAGDG 238 (366)
T ss_dssp HHHHHTTCCSEEEECGG
T ss_pred HHHHHcCCCceEEeeCC
Confidence 66777787777777644
No 66
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=94.73 E-value=0.11 Score=46.86 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=42.1
Q ss_pred HHHHHHH-H-HHcCCcEEEEeCCCchhh--HHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 154 LRRKRVF-L-EKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 154 l~~~~~~-L-e~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
+.+.++. + ...|+|+|++.|--.+.+ .+++++.+++|+++..++++.++.+.
T Consensus 167 ~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a~~w~~lr~ 222 (240)
T 3ixl_A 167 LVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRL 222 (240)
T ss_dssp HHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHHHHHHHHHH
Confidence 3445556 6 678999999999777765 58999999999999999998876664
No 67
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=94.71 E-value=0.11 Score=47.22 Aligned_cols=107 Identities=9% Similarity=0.121 Sum_probs=65.7
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||+| ...-....+|++..+... . ..+.-...|.+.+.+.. + ..+.+...+.+.+.+
T Consensus 107 ~~~rigVla-T~~T~~~~~y~~~l~~~g-~--~~v~~~~~~~lv~~ie~-g--------------~~~~~~~~~~l~~~~ 167 (255)
T 2jfz_A 107 KNAPILVLG-TKATIQSNAYDNALKQQG-Y--LNISHLATSLFVPLIEE-S--------------ILEGELLETCMHYYF 167 (255)
T ss_dssp TTSCEEEEE-CHHHHHHTHHHHHHHHTT-C--CCEEEEECTTHHHHHHT-T--------------CCSSHHHHHHHHHHH
T ss_pred CCCEEEEEE-CHHHHhChHHHHHHHHcC-C--CEEEecChHHHHHHHHh-c--------------ccCCHHHHHHHHHHH
Confidence 467999994 433333457887776653 2 22222233333332211 1 111123334444444
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--------CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--------SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--------~iPii~Ive~t~~~l~~~ 205 (332)
+. .+.|+|.|++.|--...+.+++++.+ ++|+|+-.+++++.+.+.
T Consensus 168 ~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~~~~~~~~v~viDs~~~~a~~~~~~ 221 (255)
T 2jfz_A 168 TP-LEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQK 221 (255)
T ss_dssp TT-CCSCCSEEEEESTTGGGGHHHHHHHHHHHSCCSSCCEEEEHHHHHHHHHHHH
T ss_pred hh-hcCCCCEEEEcCcChHHHHHHHHHHhCccccCCCCCEEECcHHHHHHHHHHH
Confidence 44 45799999999987777788888755 499999999999988875
No 68
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=94.66 E-value=0.61 Score=42.04 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech-----------------------------HHHHHHHHHh--
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-----------------------------ECVAKELKEA-- 205 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv-----------------------------e~t~~~l~~~-- 205 (332)
.++.|.+.++|.|++....+...+. ....++|++-+. ..+++++.+.
T Consensus 54 ~~~~l~~~~vDgII~~~~~~~~~~~--~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~p 131 (295)
T 3lft_A 54 MSKQLVANGNDLVVGIATPAAQGLA--SATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTP 131 (295)
T ss_dssp HHHHHTTSSCSEEEEESHHHHHHHH--HHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEECCCHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCEEEECCcHHHHHHH--HcCCCCCEEEEeccChhhcCccccccCCCCcEEEEECCccHHHHHHHHHHhCC
Confidence 4456778899998876532221222 223578877531 2456778877
Q ss_pred cCCCCcCCCCceEEEEechhh----hchhhHHHHHHhcCCeEE
Q 020005 206 NMKPLEAGSPLRIGVLAKNAI----LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 206 g~k~~~~~~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~vv 244 (332)
|++ |||+++.+.. .+..-|++.++++|+++.
T Consensus 132 g~~--------~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~ 166 (295)
T 3lft_A 132 NVK--------TIGALYSSSEDNSKTQVEEFKAYAEKAGLTVE 166 (295)
T ss_dssp TCC--------EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCc--------EEEEEeCCCCcchHHHHHHHHHHHHHcCCEEE
Confidence 655 9999976532 123458888999999875
No 69
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=94.58 E-value=0.56 Score=42.08 Aligned_cols=211 Identities=13% Similarity=0.007 Sum_probs=106.4
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
..+||++-.-- +-.||..+.+...+. ....+++.+... ..+.+... +
T Consensus 3 ~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----------------------~~~~~~~~----~ 52 (297)
T 3rot_A 3 RDKYYLITHGS---QDPYWTSLFQGAKKAAEELKVDLQILAPPG-----------------------ANDVPKQV----Q 52 (297)
T ss_dssp CCEEEEECSCC---CSHHHHHHHHHHHHHHHHHTCEEEEECCSS-----------------------SCCHHHHH----H
T ss_pred eEEEEEEecCC---CCchHHHHHHHHHHHHHHhCcEEEEECCCC-----------------------cCCHHHHH----H
Confidence 46899985221 345777776655432 345555544110 01223222 3
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec-----------------------hHHHHHHHHHhcCCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPL 210 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I-----------------------ve~t~~~l~~~g~k~~ 210 (332)
.++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|.
T Consensus 53 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~--- 128 (297)
T 3rot_A 53 FIESALATYPSGIATTIPSDTAFSKSLQRANK-LNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTP--- 128 (297)
T ss_dssp HHHHHHHTCCSEEEECCCCSSTTHHHHHHHHH-HTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcC---
Confidence 345677889998887554433 33444443 25665543 3456677887761
Q ss_pred cCCCCceEEEEechhh-----hchhhHHHHHHhcCCeEEecC-ccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHH
Q 020005 211 EAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVLPD-KATMEHTLIPALDA-LNRKD-VEG----ARNLLRIAL 278 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~P~-~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~ 278 (332)
..++|++++.... .+..-|.+.++++|++++.-. ....+. ....+.. +.... ++. .......++
T Consensus 129 ---~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (297)
T 3rot_A 129 ---SAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQ-VQSRVKSYFKIHPETNIIFCLTSQALDPLG 204 (297)
T ss_dssp ---TCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred ---CCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHH-HHHHHHHHHHhCCCCCEEEEcCCcchHHHH
Confidence 1239999964321 233447888999999876421 111111 1111222 33221 111 122223344
Q ss_pred HHHHhCC-----CCEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 279 QVLLVRA-----VNTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 279 ~~L~~~g-----ad~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.+.| -|..|.|+...+..+... .......|+ +...+++.+++.....
T Consensus 205 ~al~~~g~~vP~~dv~vig~D~~~~~~~~i~~~~~lttv~~~~~~~g~~av~~l~~~ 261 (297)
T 3rot_A 205 QMLLHPDRYDFNYQPQVYSFDKTPNTVSLIHKKLVNYVMDQQPFLMGYLSITQLVLM 261 (297)
T ss_dssp HHHHSHHHHTCCCCCEEEEECCCHHHHHHHHTTSCCEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCccCCCceEEEEeCCCHHHHHHHHcCCceEEEecChHHHHHHHHHHHHHH
Confidence 4454444 288888988877632221 111123333 4555666666665544
No 70
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=94.54 E-value=0.8 Score=41.24 Aligned_cols=209 Identities=10% Similarity=0.054 Sum_probs=109.4
Q ss_pred ccCeEEEEeCCChH--HHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 79 QANTVGIVGGASVD--STLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 79 ~~k~IGIiGGmGp~--AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
+.++||++=.-... .+-.||..+.+..... ....+++.+.. .+.+.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~---- 71 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSE-------------------------NSGDL---- 71 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCS-------------------------SHHHH----
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCC-------------------------CChHH----
Confidence 45789998432111 3445777777766532 34555554410 11111
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
..+.++.|.+.++|.|++.... ....++.+++ .++|+|-+ ...+++++.+.|.+
T Consensus 72 ~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~----- 145 (305)
T 3huu_A 72 YHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNE-FKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHR----- 145 (305)
T ss_dssp HHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHH-TTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHH-cCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHCCCC-----
Confidence 1233456778899987775433 3344555543 36666543 34566778887765
Q ss_pred CCceEEEEechhh-----hchhhHHHHHHhcCCeEE--ecCccchhhchHHHHH-H-HhcC-ChHH----HHHHHHHHHH
Q 020005 214 SPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV--LPDKATMEHTLIPALD-A-LNRK-DVEG----ARNLLRIALQ 279 (332)
Q Consensus 214 ~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv--~P~~~~q~~~l~~~i~-~-ik~g-~~~~----a~~~l~~~~~ 279 (332)
||++++.+.. .+..-|.+.++++|+++. ...... . -...+. . ++.+ ..+. .......+++
T Consensus 146 ---~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~ 219 (305)
T 3huu_A 146 ---HILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMN--D-LRDFIKQYCIDASHMPSVIITSDVMLNMQLLN 219 (305)
T ss_dssp ---SEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEECSHH--H-HHHHC--------CCCSEEEESSHHHHHHHHH
T ss_pred ---eEEEEcCCcccchhHHHHHHHHHHHHHcCCCcccEEecCcH--H-HHHHHHHhhhcCCCCCCEEEECChHHHHHHHH
Confidence 9999975432 123337888999887642 222110 0 111112 2 2322 1111 1223334555
Q ss_pred HHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 280 VLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 280 ~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
.+.+.| -|.-|.|+...+..... .+. +..|+ +...+++.+++......+
T Consensus 220 al~~~g~~vP~di~vig~D~~~~~~~~-~p~-lttv~~~~~~~g~~av~~l~~~i~ 273 (305)
T 3huu_A 220 VLYEYQLRIPEDIQTATFNTSFLTENA-TPS-QTSVNINPDVLGFTAGNTIIDVLR 273 (305)
T ss_dssp HHHHTTCCTTTTCEEEEESCSHHHHTS-SSC-CEEEECCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCcceEEEEECCcchhhhc-CCc-ceEEecCHHHHHHHHHHHHHHHhh
Confidence 666666 47889999888743211 121 23343 566777777777766533
No 71
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=94.53 E-value=0.75 Score=41.08 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=81.3
Q ss_pred HHHHHHcCCcEEEEeCCCc-h-hhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLS-H-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa-H-~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.|.+.++|.|++..... . ..++.+++ .++|++-+ ...+++++.+.|++
T Consensus 69 ~~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~-------- 139 (293)
T 2iks_A 69 IEHLLQRQVDAIIVSTSLPPEHPFYQRWAN-DPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE-------- 139 (293)
T ss_dssp HHHHHHTTCSEEEECCSSCTTCHHHHTTTT-SSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHTSCCS--------
T ss_pred HHHHHHcCCCEEEEeCCCCCcHHHHHHHHh-CCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHHCCCC--------
Confidence 4567788999988865432 2 23444433 46777643 23455666666654
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE--EecCccchhhchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHHh
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV--VLPDKATMEHTLIPALDA-LNRK-DVEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v--v~P~~~~q~~~l~~~i~~-ik~g-~~~~----a~~~l~~~~~~L~~ 283 (332)
||++++.... .+..-|.+.++++|++. +.......+. -...+.. ++.+ +.+. .......+++.+.+
T Consensus 140 ~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 218 (293)
T 2iks_A 140 TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREA-AAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLR 218 (293)
T ss_dssp SEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESSSCHHH-HHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccHHHHHHHHHHHHHHcCCCccEEEcCCCChhh-HHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHH
Confidence 9999975421 12233778888888743 2222211111 1112233 3333 1111 11222233344444
Q ss_pred CC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 284 RA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 284 ~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.| -|.-|.|+...+.. .-..+ .+..|+ +...+++.+++.....
T Consensus 219 ~g~~vP~di~vvg~d~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~~ 266 (293)
T 2iks_A 219 RDGKLPSDLAIATFGDNELL-DFLQC-PVLAVAQRHRDVAERVLEIVLAS 266 (293)
T ss_dssp HHSSCCSSCEEEEESCCGGG-GGCSS-EEEEEECCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEECCHHHH-hhcCC-CeeEEeCCHHHHHHHHHHHHHHH
Confidence 33 47788898887742 11122 123343 4566777777766554
No 72
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=94.53 E-value=2.9 Score=38.54 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=84.8
Q ss_pred HHHHHHcCCcEEEEe-CCCchhh-HHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMP-CHLSHIW-HDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~-CNTaH~~-~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++. +...... ...+. ..++|++-+ ...+++++.+.|++ |
T Consensus 111 l~~l~~~~vdGiIi~~~~~~~~~~~~~~~-~~~iPvV~i~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~ 181 (349)
T 1jye_A 111 VHNLLAQRVSGLIINYPLDDQDAIAVEAA-CTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQ--------Q 181 (349)
T ss_dssp HHHHHTTTCSCEEEESCCCHHHHHHHHHH-TTTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCC--------S
T ss_pred HHHHHHCCCCEEEEecCCCChhHHHHHHh-hCCCCEEEEcccCCCCCCEEEEchHHHHHHHHHHHHHCCCC--------E
Confidence 345667899988875 3322222 22222 346776643 23355777777765 9
Q ss_pred EEEEechhh---h--chhhHHHHHHhcCCeEE--ecCccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHHHHHhC
Q 020005 218 IGVLAKNAI---L--TAGFYQEKLQHEGFEVV--LPDKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQVLLVR 284 (332)
Q Consensus 218 VGlLaT~~T---~--~s~lY~~~l~~~Gi~vv--~P~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~~L~~~ 284 (332)
||+++.+.. . +..=|.+.++++|+++. .......+. -...+ +.+..+. .+. .......+++.+.+.
T Consensus 182 I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~ 260 (349)
T 1jye_A 182 IALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMS-GFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITES 260 (349)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHH-HHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCCCccccccCCCChHH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHc
Confidence 999986422 1 12237888999887532 221111111 01112 2233332 111 122334455667666
Q ss_pred CC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 285 AV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 285 ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
|. |.-|.|+...+..... .+. +..|+ +...+++.+++......
T Consensus 261 G~~vP~disvvGfD~~~~~~~~-~p~-lttv~q~~~~~g~~Av~~L~~~i 308 (349)
T 1jye_A 261 GLRVGADISVVGYDDTEDSSCY-IPP-LTTIKQDFRLLGQTSVDRLLQLS 308 (349)
T ss_dssp TCCBTTTBEEECSBCCGGGGGS-SSC-CBEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEECCcHHHHhc-CCc-eeEEeCCHHHHHHHHHHHHHHHh
Confidence 64 7889999988854211 121 23443 56777777777766543
No 73
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=94.52 E-value=1.6 Score=38.87 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=83.4
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec-------------------------hHHHHHHHHH-----
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV-------------------------SECVAKELKE----- 204 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I-------------------------ve~t~~~l~~----- 204 (332)
++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+
T Consensus 52 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~ 130 (309)
T 2fvy_A 52 IDVLLAKGVKALAINLVDPAAAGTVIEKARG-QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN 130 (309)
T ss_dssp HHHHHHTTCSEEEECCSSGGGHHHHHHHHHT-TTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEeCCCcchhHHHHHHHHH-CCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 45567789998888554332 33455543 46777643 2234455555
Q ss_pred -------hcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHH-HhcC--
Q 020005 205 -------ANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDA-LNRK-- 265 (332)
Q Consensus 205 -------~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~-ik~g-- 265 (332)
.|. ++|++++.... .+..-|.+.++++|+++ +.......+. -...++. +...
T Consensus 131 ~~~~~~g~g~--------~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 201 (309)
T 2fvy_A 131 QGWDLNKDGQ--------IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQ-AKDKMDAWLSGPNA 201 (309)
T ss_dssp GGGCTTCSSS--------EEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHH-HHHHHHHHHTSTTG
T ss_pred ccccccCCCc--------eEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHH-HHHHHHHHHHhCCC
Confidence 232 38999875321 12233778888888754 2221111111 1112232 3331
Q ss_pred -ChHH----HHHHHHHHHHHHHhCCC-CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 266 -DVEG----ARNLLRIALQVLLVRAV-NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 266 -~~~~----a~~~l~~~~~~L~~~ga-d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+.+. .......+++.+.+.|- |..|.|+...+...... +......|+ +...+++.+++.....-
T Consensus 202 ~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~~~~~~~~~~g~~lttv~~~~~~~g~~a~~~l~~~i 273 (309)
T 2fvy_A 202 NKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 273 (309)
T ss_dssp GGCCEEEESSHHHHHHHHHHHHHTTCTTSCEECSBCCHHHHHHHHHTSSCBEEECCHHHHHHHHHHHHHHHH
T ss_pred CCccEEEECCchhHHHHHHHHHHcCCCCceEEecCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHHHHH
Confidence 2211 12333456667777776 78888988877542110 011123333 45566777777665543
No 74
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=94.51 E-value=2.4 Score=37.49 Aligned_cols=215 Identities=13% Similarity=0.141 Sum_probs=111.6
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++-.- .+-.||..+.+..... ....+++.+. ..+.+.. .
T Consensus 7 ~~~~Ig~i~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-------------------------~~~~~~~----~ 54 (293)
T 3l6u_A 7 KRNIVGFTIVN---DKHEFAQRLINAFKAEAKANKYEALVATS-------------------------QNSRISE----R 54 (293)
T ss_dssp --CEEEEEESC---SCSHHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------SSCHHHH----H
T ss_pred CCcEEEEEEec---CCcHHHHHHHHHHHHHHHHcCCEEEEECC-------------------------CCCHHHH----H
Confidence 45789998522 2335777776665532 4556665441 1122222 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPL 210 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k~~ 210 (332)
+.++.|.+.++|.|++...... ..++.+.+ .++|++-+ ...+++++.+. |.+
T Consensus 55 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~-- 131 (293)
T 3l6u_A 55 EQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK-AGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQT-- 131 (293)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHH-TTCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH-cCCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCC--
Confidence 3345577789998887655444 33455543 36776654 33455667663 532
Q ss_pred cCCCCceEEEEechh-h----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHH-HHHhcC-ChHH----HHHHHHH
Q 020005 211 EAGSPLRIGVLAKNA-I----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPAL-DALNRK-DVEG----ARNLLRI 276 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~-T----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l~~ 276 (332)
....+||++++... . .+..-|.+.++++ |++++. ......+. -...+ +.+..+ +++. .......
T Consensus 132 -~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g 209 (293)
T 3l6u_A 132 -GRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVT-SERVMRQVIDSGIPFDAVYCHNDDIAMG 209 (293)
T ss_dssp -SCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHH-HHHHHHHHHHTTCCCSEEEESSHHHHHH
T ss_pred -CCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHH-HHHHHHHHHHhCCCCCEEEECCchHHHH
Confidence 00123899997422 1 1233477888888 988753 22111111 11112 223332 2211 1233344
Q ss_pred HHHHHHhCCC-CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 277 ALQVLLVRAV-NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 277 ~~~~L~~~ga-d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+++.+.+.|. |..|.|+...+...... .+..+..|+ +...+++.+++.....-+
T Consensus 210 ~~~al~~~g~~di~vig~d~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~i~ 266 (293)
T 3l6u_A 210 VLEALKKAKISGKIVVGIDGNRAILEAVDMKSMDATVVQSAEEMMKVAFSALKLHTK 266 (293)
T ss_dssp HHHHHHHTTCCCCEEEEEECCHHHHHHHHTTSSCEEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHcCCccEEEeCCHHHHHHHHHHHHHHHHc
Confidence 5566666666 88999998887542110 111123443 566777777777766543
No 75
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=94.39 E-value=0.78 Score=40.92 Aligned_cols=160 Identities=12% Similarity=0.101 Sum_probs=89.9
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 159 VFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
+.+.+.++|.|++.... ....++.+++ .++|+|-+ ...+++++.+.|.+ ||
T Consensus 60 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~I 130 (288)
T 3gv0_A 60 YILETGSADGVIISKIEPNDPRVRFMTE-RNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRK--------RI 130 (288)
T ss_dssp HHHHHTCCSEEEEESCCTTCHHHHHHHH-TTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCC--------EE
T ss_pred HHHHcCCccEEEEecCCCCcHHHHHHhh-CCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCC--------eE
Confidence 34667899988876543 2344566654 46776654 44567788887765 99
Q ss_pred EEEechhh-----hchhhHHHHHHhcCCeEEe----cCccchhhchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHHh
Q 020005 219 GVLAKNAI-----LTAGFYQEKLQHEGFEVVL----PDKATMEHTLIPALDA-LNRKD-VEG----ARNLLRIALQVLLV 283 (332)
Q Consensus 219 GlLaT~~T-----~~s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~~-ik~g~-~~~----a~~~l~~~~~~L~~ 283 (332)
++++.+.. .+..-|.+.++++|+++.. ......+. ....+.. ++.+. .+. .......+++.+.+
T Consensus 131 ~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~ 209 (288)
T 3gv0_A 131 AVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEK-IRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEA 209 (288)
T ss_dssp EEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHH-HHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred EEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHH-HHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 99975432 1233478889999987532 11111111 1112222 33322 111 12333445566766
Q ss_pred CC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 284 RA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 284 ~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
.| -|.-|+|+...++.. ...+ .+..|+ +...+++.+++......+
T Consensus 210 ~g~~vP~di~vig~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~i~ 259 (288)
T 3gv0_A 210 AGVKIGEDVDIVSKQSAEFLN-WIKP-QIHTVNEDIKLAGRELAKALLARIN 259 (288)
T ss_dssp TTCCTTTSCEEEEEESSTTHH-HHCT-TSEEEECCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCceEEEEecChHHHh-ccCC-CceEEecCHHHHHHHHHHHHHHHhc
Confidence 66 478899998887432 1112 123343 567778888877766543
No 76
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=94.38 E-value=1 Score=41.20 Aligned_cols=127 Identities=11% Similarity=0.051 Sum_probs=70.3
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------------hHHHHHHHHHhcCCCCc
Q 020005 158 RVFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~Le-~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------------ve~t~~~l~~~g~k~~~ 211 (332)
++.|. +.++++|+.+..+.... ...+.+..++|+|.. ...+++.+.+.|.+
T Consensus 64 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--- 140 (358)
T 3hut_A 64 ARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFT--- 140 (358)
T ss_dssp HHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCC---
T ss_pred HHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCC---
Confidence 34455 78999998876654322 233444557888874 23456677776765
Q ss_pred CCCCceEEEEechhh---hchhhHHHHHHhcCCeEEec---CccchhhchHHHHHHHhcCChH-----HHHHHHHHHHHH
Q 020005 212 AGSPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVVLP---DKATMEHTLIPALDALNRKDVE-----GARNLLRIALQV 280 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv~P---~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~~~ 280 (332)
||++++.... -...-|++.+++.|++++.. ..... .+...+..++....+ ........+++.
T Consensus 141 -----~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~ 213 (358)
T 3hut_A 141 -----SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNR--RFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRA 213 (358)
T ss_dssp -----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCHHHHHHHHHHCCSEEEEESCHHHHHHHHHH
T ss_pred -----EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCc--cHHHHHHHHHhcCCCEEEEccCchHHHHHHHH
Confidence 9999975432 23345788899999987531 11111 122223444321111 011233445556
Q ss_pred HHhCCCCEEEECCC
Q 020005 281 LLVRAVNTVILASD 294 (332)
Q Consensus 281 L~~~gad~VILGCT 294 (332)
+.+.|.+.-++|..
T Consensus 214 ~~~~g~~~p~~~~~ 227 (358)
T 3hut_A 214 LRARGSALPVYGSS 227 (358)
T ss_dssp HHHTTCCCCEEECG
T ss_pred HHHcCCCCcEEecC
Confidence 66777766666654
No 77
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=94.38 E-value=0.74 Score=42.06 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=84.8
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++.... ....++.+.+ .++|++-+ ...+++++.+.|++ |
T Consensus 109 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~ 179 (332)
T 2hsg_A 109 LNNMLGKQVDGIIFMSGNVTEEHVEELKK-SPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHK--------N 179 (332)
T ss_dssp HHHTSCCSSCCEEECCSSCCHHHHHHHTT-SSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHTTTCS--------C
T ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHHh-CCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------E
Confidence 345556788877765433 2334555543 45665533 33455667776654 9
Q ss_pred EEEEechh-h---h--chhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHHHH
Q 020005 218 IGVLAKNA-I---L--TAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 218 VGlLaT~~-T---~--~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~~L 281 (332)
|++++.+. . . +..-|.+.++++|+++ +.......+. -...+. .++.+ +.+. .......+++.+
T Consensus 180 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al 258 (332)
T 2hsg_A 180 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDS-GIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGA 258 (332)
T ss_dssp EEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHH-HHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHH-HHHHHHHHHcCCCCCeEEEECChHHHHHHHHHH
Confidence 99998653 1 1 2233788899988754 2222111111 111122 23333 2211 123334455667
Q ss_pred HhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 282 LVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 282 ~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.+.|. |.-|.|+...+... ...+. +..|+ +...+++.+++.....
T Consensus 259 ~~~G~~vP~disvvg~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~ 308 (332)
T 2hsg_A 259 QDRGLNVPNDLEIIGFDNTRLST-MVRPQ-LTSVVQPMYDIGAVAMRLLTKY 308 (332)
T ss_dssp HHTTCCHHHHCEEEEESCCGGGG-SSSSC-CEEEECCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCeEEEEECChHHHh-ccCCc-eeEEECCHHHHHHHHHHHHHHH
Confidence 77775 57788988887532 12222 34444 5667777777776654
No 78
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=94.28 E-value=0.6 Score=43.40 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=89.0
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 158 RVFLEKAGARCIVMPCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa-H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.|.+.++|.|++..... ...++.+.+. ++|++-+ ...+++++.+.|++ |
T Consensus 121 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r--------~ 191 (366)
T 3h5t_A 121 QQLVNNAAVDGVVIYSVAKGDPHIDAIRAR-GLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALIDAGHR--------K 191 (366)
T ss_dssp HHHHHTCCCSCEEEESCCTTCHHHHHHHHH-TCCEEEESSCCSCTTCCEEEECHHHHTHHHHHHHHHTTCC--------S
T ss_pred HHHHHhCCCCEEEEecCCCChHHHHHHHHC-CCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------c
Confidence 4567788999888765532 3445555543 5666543 34567888888776 9
Q ss_pred EEEEech--------------------hh--hchhhHHHHHHhcCCeE-----EecCccchhhchHHHHH-HHhcCC-hH
Q 020005 218 IGVLAKN--------------------AI--LTAGFYQEKLQHEGFEV-----VLPDKATMEHTLIPALD-ALNRKD-VE 268 (332)
Q Consensus 218 VGlLaT~--------------------~T--~~s~lY~~~l~~~Gi~v-----v~P~~~~q~~~l~~~i~-~ik~g~-~~ 268 (332)
||+++.+ .+ .+..-|.+.++++|+++ +.......+. -...+. .++.+. .+
T Consensus 192 I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 270 (366)
T 3h5t_A 192 IGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQH-NFEVAKELLETHPDLT 270 (366)
T ss_dssp EEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHH-HHHHHHHHHHHCTTCC
T ss_pred EEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHH-HHHHHHHHHcCCCCCc
Confidence 9999831 11 12334788899998762 2222111111 111122 233221 11
Q ss_pred H----HHHHHHHHHHHHHhCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 269 G----ARNLLRIALQVLLVRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 269 ~----a~~~l~~~~~~L~~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
. .......+++.+.+.|. |.-|+|+...+.... +. +..|+ +...+++.+++.....-+
T Consensus 271 ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~~~~~~---~~-lttv~q~~~~~G~~Av~~L~~~i~ 337 (366)
T 3h5t_A 271 AVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALA---RD-LTTVIQPNKLKGFKAGETLLKMID 337 (366)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCHHHHH---TT-CCEEECCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCChhhcC---CC-ccEEEeCHHHHHHHHHHHHHHHhc
Confidence 1 12233345566667664 788999988876541 11 23333 667778888877766544
No 79
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=94.07 E-value=0.17 Score=46.35 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=65.9
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||--+...+ .+|++..+.... .+.++....|..-+.+.. + .-+.+...+.+.+.+
T Consensus 117 ~~~rIgVlaT~~T~~~-~~y~~~l~~~~~--g~~v~~~~~~~~v~~ie~-g--------------~~~~~~~~~~l~~~~ 178 (273)
T 2oho_A 117 TKGQVGVIGTPMTVAS-DIYRKKIQLLAP--SIQVRSLACPKFVPIVES-N--------------EMCSSIAKKIVYDSL 178 (273)
T ss_dssp SSSEEEEEECHHHHHH-THHHHHHHHHCT--TSEEEEEECTTHHHHHCC--------------------HHHHHHHHHHH
T ss_pred CCCeEEEEECchhhcc-hHHHHHHHHhCC--CCEEEecCCHHHHHHHHC-C--------------CCCCHHHHHHHHHHH
Confidence 3578999964433333 467777665422 233443233333221110 0 112234455566666
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
+.|.+. +|.|++.|--...+.+++++.. ++|+|+-.+++++++.+.
T Consensus 179 ~~l~~~-~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~~ 226 (273)
T 2oho_A 179 APLVGK-IDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVL 226 (273)
T ss_dssp TTTTTS-CSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHH
T ss_pred HHHHhc-CCEEEEcCCCHHHHHHHHHHHhCCCCEEECcHHHHHHHHHHH
Confidence 677666 9999999976666788898866 799999999998776653
No 80
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=94.03 E-value=1.7 Score=38.53 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=82.6
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNT-aH~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
++.|.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+ ||
T Consensus 58 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~i 128 (290)
T 3clk_A 58 LLTAIERPVMGILLLSIALTDDNLQLLQS-SDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGHR--------QI 128 (290)
T ss_dssp HHHHHSSCCSEEEEESCC----CHHHHHC-C--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTCC--------SE
T ss_pred HHHHHhcCCCEEEEecccCCHHHHHHHHh-CCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcCCC--------EE
Confidence 345667899988775433 2344566654 56776643 23455666666554 99
Q ss_pred EEEechhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHHHHhcC-ChHH----HHHHHHHHHHHHHhC
Q 020005 219 GVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALDALNRK-DVEG----ARNLLRIALQVLLVR 284 (332)
Q Consensus 219 GlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~~ik~g-~~~~----a~~~l~~~~~~L~~~ 284 (332)
++++.... .+..-|.+.++++|+++ +.......+. -...+..+-.+ +.+. .......+++.+.+.
T Consensus 129 ~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~al~~~ 207 (290)
T 3clk_A 129 GIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTS-GEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSF 207 (290)
T ss_dssp EEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHH-HHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhh-HHHHHHHHhccCCCcEEEECCcHHHHHHHHHHHHc
Confidence 99975421 22334788898888764 2222211111 11122332212 2111 122333455566666
Q ss_pred C----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 285 A----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 285 g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
| -|.-|.|+...+... ...+ .+..|+ +...+++.+++......
T Consensus 208 g~~vP~di~vvg~d~~~~~~-~~~p-~lttv~~~~~~~g~~av~~l~~~i 255 (290)
T 3clk_A 208 GIEVPKDLSIVSIDGTEMCK-ITRP-QLTSISQDFFQMGVTGVQQIHQSV 255 (290)
T ss_dssp TCCTTTTCEEEEEECCTHHH-HSSS-CCEEEECCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCceEEEEeCChHHHh-hcCC-CceEEecCHHHHHHHHHHHHHHHH
Confidence 6 367788887776421 1122 124444 56677777777776553
No 81
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=93.98 E-value=3.1 Score=37.36 Aligned_cols=164 Identities=14% Similarity=0.052 Sum_probs=86.4
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHH-HhcCCCCcC
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELK-EANMKPLEA 212 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~-~~g~k~~~~ 212 (332)
.++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++. +.|.+
T Consensus 50 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~---- 124 (313)
T 3m9w_A 50 QIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ-EGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQG---- 124 (313)
T ss_dssp HHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT-TTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSE----
T ss_pred HHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCC----
Confidence 345677889999888776544 34555543 35665533 345566777 55543
Q ss_pred CCCceEEEEechhhh-----chhhHHHHHHhc----CCeEEec---CccchhhchHHHH-HHHhcC--ChHH----HHHH
Q 020005 213 GSPLRIGVLAKNAIL-----TAGFYQEKLQHE----GFEVVLP---DKATMEHTLIPAL-DALNRK--DVEG----ARNL 273 (332)
Q Consensus 213 ~~~~rVGlLaT~~T~-----~s~lY~~~l~~~----Gi~vv~P---~~~~q~~~l~~~i-~~ik~g--~~~~----a~~~ 273 (332)
+|++++..... +..-|.+.++++ +++++.. .....+. ....+ +.+.+. +++. ....
T Consensus 125 ----~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ai~~~~d~~ 199 (313)
T 3m9w_A 125 ----NYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPEN-ALKIMENALTANNNKIDAVVASNDAT 199 (313)
T ss_dssp ----EEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHH-HHHHHHHHHHHTTTCCCEEEESSHHH
T ss_pred ----cEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHH-HHHHHHHHHHhCCCCeeEEEECCCch
Confidence 99999743221 223377788877 5766531 1111111 11112 223332 2221 1233
Q ss_pred HHHHHHHHHhCCC--CEEEECCCCcccCCCCC--CCCCCceechHHHHHHHHHHHHHhhcc
Q 020005 274 LRIALQVLLVRAV--NTVILASDDMQDLLPPD--DPLLKKCIDPMDALARSTIKWVKSAEK 330 (332)
Q Consensus 274 l~~~~~~L~~~ga--d~VILGCTElpli~~~~--~~~~ipvID~~~~lA~a~v~~a~~~~~ 330 (332)
...+++.+.+.|. |..|.|+...+...... .+..-.+-=+...+++.+++.....-+
T Consensus 200 a~g~~~al~~~G~~~di~vig~d~~~~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~~i~ 260 (313)
T 3m9w_A 200 AGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGN 260 (313)
T ss_dssp HHHHHHHHHTTTCTTTSEECCCSCCHHHHHHHHHTSSCCEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCcEEEecCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHHHc
Confidence 3455566776665 68889988876543111 111112223556677777777665543
No 82
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=93.98 E-value=0.062 Score=47.75 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCCC-CCCCCceechHHHHHHHHHH
Q 020005 267 VEGARNLLRIALQVLLVRAVNTVILASDDMQDLLPPD-DPLLKKCIDPMDALARSTIK 323 (332)
Q Consensus 267 ~~~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~~-~~~~ipvID~~~~lA~a~v~ 323 (332)
.++....+.++++.|.+.|+|+|+++|.=.+..++.. ....+|++...+..++++..
T Consensus 55 ~~~~~~~l~~~~~~L~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~a~~~~~~~ 112 (226)
T 2zsk_A 55 WEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILK 112 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEESSSGGGGGHHHHHHHCSSCBCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCcHHHHHHHHHHhCCCCEeccHHHHHHHHHH
Confidence 3456777888888898899999999999988665432 22357999988888877653
No 83
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=93.83 E-value=1.7 Score=40.35 Aligned_cols=127 Identities=6% Similarity=0.010 Sum_probs=68.5
Q ss_pred HHHHHHHc-CCcEEEEeCCCchh-hHHHHhhhCCCCeeec-------------------------hHHHHHHHHHh-cCC
Q 020005 157 KRVFLEKA-GARCIVMPCHLSHI-WHDEVCKGCSVPFLHV-------------------------SECVAKELKEA-NMK 208 (332)
Q Consensus 157 ~~~~Le~~-Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I-------------------------ve~t~~~l~~~-g~k 208 (332)
.++.|.+. ++++|+.+ .+... ..-.+.+..++|+|.. ....++.+.+. |.+
T Consensus 66 ~~~~li~~~~V~~iig~-~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~ 144 (392)
T 3lkb_A 66 FFEEAVDRFKIPVFLSY-ATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGA 144 (392)
T ss_dssp HHHHHHHTTCCSCEEEC-CHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcCcEEEEeC-CcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCC
Confidence 34456554 89988874 33222 1233344457787762 22355666665 655
Q ss_pred CCcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEec---CccchhhchHHHHHHHhcCChH-----HHHHHHHHH
Q 020005 209 PLEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVLP---DKATMEHTLIPALDALNRKDVE-----GARNLLRIA 277 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~P---~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~ 277 (332)
||+++..+... ...-|++.+++.|++++.. .....+ +...+..+++...+ ........+
T Consensus 145 --------~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d--~~~~~~~l~~~~~dav~~~~~~~~a~~~ 214 (392)
T 3lkb_A 145 --------KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLD--NTALLKRFEQAGVEYVVHQNVAGPVANI 214 (392)
T ss_dssp --------EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCC--CHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred --------EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcC--HHHHHHHHHhcCCCEEEEecCcchHHHH
Confidence 99999875432 2345788899999987631 111111 22234444432211 112233445
Q ss_pred HHHHHhCCCCEEEECCC
Q 020005 278 LQVLLVRAVNTVILASD 294 (332)
Q Consensus 278 ~~~L~~~gad~VILGCT 294 (332)
++.+.+.|.+.-+++..
T Consensus 215 ~~~~~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 215 LKDAKRLGLKMRHLGAH 231 (392)
T ss_dssp HHHHHHTTCCCEEEECG
T ss_pred HHHHHHcCCCceEEEec
Confidence 55666777777676653
No 84
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=93.80 E-value=3.3 Score=36.49 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=87.0
Q ss_pred HHHHHHHcCCcEEEEeCCCc------hhhHHHHhhhCCCCeeec-------------------hHHHHHHHHHhcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLS------HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa------H~~~d~l~~~~~iPii~I-------------------ve~t~~~l~~~g~k~~~ 211 (332)
.++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--- 138 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK-NGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHT--- 138 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH-TTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHh-cCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCC---
Confidence 34567788999888765432 134555544 37777654 34567788887765
Q ss_pred CCCCceEEEEechhh----hchhhHHHHHHhcCCeE----Ee-cCccchhhchHHHH-HHHhcCC---hHH----HHHHH
Q 020005 212 AGSPLRIGVLAKNAI----LTAGFYQEKLQHEGFEV----VL-PDKATMEHTLIPAL-DALNRKD---VEG----ARNLL 274 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi~v----v~-P~~~~q~~~l~~~i-~~ik~g~---~~~----a~~~l 274 (332)
||++++.... .+..-|.+.++++|+++ +. .+...........+ +.++++. .+. .....
T Consensus 139 -----~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a 213 (298)
T 3tb6_A 139 -----HMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIA 213 (298)
T ss_dssp -----SEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHH
T ss_pred -----cEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHH
Confidence 8999975433 12233778888888753 11 11111100001112 2233221 211 12333
Q ss_pred HHHHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 275 RIALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 275 ~~~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
..+++.+.+.| -|.-|.|+...++.... .+ .+..|+ +...+++.+++...+..+
T Consensus 214 ~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~-~p-~lttv~~~~~~~g~~a~~~l~~~i~ 272 (298)
T 3tb6_A 214 LKVIDMLREMDLKVPEDMSIVGYDDSHFAQIS-EV-KLTSVKHPKSVLGKAAAKYVIDCLE 272 (298)
T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCCTHHHHS-SS-CCBEEECCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCceEEEecCCcHHHhcc-CC-CCceEecCHHHHHHHHHHHHHHHHh
Confidence 44556666665 47788898887643211 11 123333 456677777777766533
No 85
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=93.78 E-value=2.4 Score=37.54 Aligned_cols=215 Identities=9% Similarity=-0.011 Sum_probs=109.7
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+.++||++=-- .+-.||..+.+..... ....+++++... ..+.+...
T Consensus 4 ~~~~Igvi~~~---~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-----------------------~~~~~~~~---- 53 (304)
T 3o1i_D 4 SDEKICAIYPH---LKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-----------------------YPNKSRQE---- 53 (304)
T ss_dssp -CCEEEEEESC---SCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-----------------------TTCHHHHH----
T ss_pred CCcEEEEEeCC---CCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-----------------------CCCHHHHH----
Confidence 45789988421 1335777777666532 345565544110 01222222
Q ss_pred HHHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec-------------------------hHHHHHHHHHhcC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV-------------------------SECVAKELKEANM 207 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I-------------------------ve~t~~~l~~~g~ 207 (332)
+.++.|.+.++|.|++...... ..++.+. .++|++.+ ...+++++.+.|.
T Consensus 54 ~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~--~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~ 131 (304)
T 3o1i_D 54 QQLALCTQWGANAIILGTVDPHAYEHNLKSWV--GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHP 131 (304)
T ss_dssp HHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT--TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc--CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcc
Confidence 3345677789999887655443 4466666 58888776 1234566666652
Q ss_pred CCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCeEEec--CccchhhchHHHHH-HHhcCChHH---HHHHHHH
Q 020005 208 KPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVLP--DKATMEHTLIPALD-ALNRKDVEG---ARNLLRI 276 (332)
Q Consensus 208 k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~P--~~~~q~~~l~~~i~-~ik~g~~~~---a~~~l~~ 276 (332)
+ .+..+||++++.... .+..-|.+.++++|+++... .....+. -...+. .++..+++. .......
T Consensus 132 ~---~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ai~~~d~~a~g 207 (304)
T 3o1i_D 132 K---GSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSFWADNDKEL-QRNLVQRVIDMGNIDYIVGSAVAIEA 207 (304)
T ss_dssp T---TTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECCCCCSCHHH-HHHHHHHHHHHSCCSEEEECHHHHHH
T ss_pred c---CCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEeecCCCcHHH-HHHHHHHHHcCCCCCEEEecCcchHH
Confidence 1 011348999964321 12233777788889877531 1111111 111111 222122111 1233445
Q ss_pred HHHHHHhCCC--CEEEECCCCcccCCCCCCC--CCCcee-chHHHHHHHHHHHHHhhcc
Q 020005 277 ALQVLLVRAV--NTVILASDDMQDLLPPDDP--LLKKCI-DPMDALARSTIKWVKSAEK 330 (332)
Q Consensus 277 ~~~~L~~~ga--d~VILGCTElpli~~~~~~--~~ipvI-D~~~~lA~a~v~~a~~~~~ 330 (332)
+++.+.+.|. |.-|.|+.-.|.+...... .....+ ++. .+++.+++.+...-+
T Consensus 208 ~~~al~~~g~~~di~vvg~d~~p~~~~~i~~g~~~~~~~~~~~-~~g~~av~~l~~~i~ 265 (304)
T 3o1i_D 208 AISELRSADKTHDIGLVSVYLSHGVYRGLLRNKVLFAPTDKMV-QQGRLSVMQAAHYLR 265 (304)
T ss_dssp HHHHHTTTTCGGGSEEBCSSCCHHHHHHHTTTSCCBCCBCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCcceEEEecCHH-HHHHHHHHHHHHHHc
Confidence 5667777787 8888888655544311110 111133 444 677777776665533
No 86
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=93.78 E-value=0.053 Score=49.22 Aligned_cols=106 Identities=10% Similarity=0.152 Sum_probs=66.8
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||+|--+...+ .+|++..+.. ...++....|.+.+.+..+ .-+.+...+.+.+.+
T Consensus 105 ~~~rigVlaT~~T~~~-~~y~~~l~~~----g~~v~~~~~~~~v~~ie~g---------------~~~~~~~~~~l~~~~ 164 (254)
T 1b73_A 105 RNKKIGVIGTPATVKS-GAYQRKLEEG----GADVFAKACPLFAPLAEEG---------------LLEGEITRKVVEHYL 164 (254)
T ss_dssp SSCEEEEEECHHHHHH-CHHHHHHHTT----SCEEEEEECCCCTTTSCGG---------------GGSGGGHHHHHHHHS
T ss_pred CCCEEEEEEChHHhhh-HHHHHHHHcC----CCEEEecCCHHHHHHHHCC---------------CCCCHHHHHHHHHHH
Confidence 4579999964444443 4788777621 2334333333322211100 011133445566666
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC-CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~-~iPii~Ive~t~~~l~~~ 205 (332)
+.|.+. +|.|++.|--...+.+++++.. ++|+|+-.+++++.+.+.
T Consensus 165 ~~l~~~-~d~IILGCT~~p~l~~~i~~~~~~vpviDs~~~~a~~~~~~ 211 (254)
T 1b73_A 165 KEFKGK-IDTLILGCTHYPLLKKEIKKFLGDAEVVDSSEALSLSLHNF 211 (254)
T ss_dssp TTTTTT-CSEEEECCCCTTCCHHHHHHHSCSCEEECHHHHHHHTTTTT
T ss_pred HHHHhc-CCEEEECccChHHHHHHHHHHcCCCeEECCHHHHHHHHHHH
Confidence 666666 9999999987777789999878 899999999998877653
No 87
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=93.73 E-value=0.1 Score=46.16 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCch--hhHHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH--~~~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
..+.+.+.++.|.+.|+|.|++.|--.. .+.+++++.+++|+|+-.+.+++.+.+.
T Consensus 159 ~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~~a~~~~~~ 216 (228)
T 2eq5_A 159 GRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVALHA 216 (228)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHHHHHHHHHH
Confidence 4455666777787789999999999888 7789999888999999999988877653
No 88
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=93.71 E-value=1.4 Score=39.18 Aligned_cols=162 Identities=10% Similarity=0.088 Sum_probs=82.7
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHh-c-CCCCcC
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA-N-MKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~-g-~k~~~~ 212 (332)
++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+. | .+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~---- 124 (283)
T 2ioy_A 50 VEDLIQQKVDVLLINPVDSDAVVTAIKEANS-KNIPVITIDRSANGGDVVCHIASDNVKGGEMAAEFIAKALKGKG---- 124 (283)
T ss_dssp HHHHHHTTCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHTTTCE----
T ss_pred HHHHHHcCCCEEEEeCCchhhhHHHHHHHHH-CCCeEEEecCCCCCcceeEEEecChHHHHHHHHHHHHHHcCCCc----
Confidence 34566789999887543322 23444433 35665432 33455667766 3 43
Q ss_pred CCCceEEEEechh-h----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHH
Q 020005 213 GSPLRIGVLAKNA-I----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIAL 278 (332)
Q Consensus 213 ~~~~rVGlLaT~~-T----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~ 278 (332)
||++++.+. . -+..-|.+.++++ |++++. ......+. -...++ .++.+ +++. .......++
T Consensus 125 ----~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~ 199 (283)
T 2ioy_A 125 ----NVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSK-GLSVMENILQAQPKIDAVFAQNDEMALGAI 199 (283)
T ss_dssp ----EEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCSCCCEEEESSHHHHHHHH
T ss_pred ----eEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHH-HHHHHHHHHHhCCCccEEEECCchHHHHHH
Confidence 999997432 1 1223378888888 887542 21111111 111122 23322 2211 122334455
Q ss_pred HHHHhCCC-CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 279 QVLLVRAV-NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 279 ~~L~~~ga-d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+.+.+.|. |.-|.|....+...... .+.....|+ +...+++.+++......
T Consensus 200 ~al~~~G~~di~viG~D~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~i 253 (283)
T 2ioy_A 200 KAIEAANRQGIIVVGFDGTEDALKAIKEGKMAATIAQQPALMGSLGVEMADKYL 253 (283)
T ss_dssp HHHHHTTCCCCEEEEEECCHHHHHHHHTTSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCcEEEEeCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 66777776 88888888777542111 111123333 55666777676665543
No 89
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=93.64 E-value=1.7 Score=38.42 Aligned_cols=200 Identities=10% Similarity=0.083 Sum_probs=106.1
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCC-EEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFP-FLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~-~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (332)
+.++||++=.- .+-.||..+.+...+. .... +++.+. ..+.+..
T Consensus 9 ~~~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-------------------------~~~~~~~---- 56 (277)
T 3hs3_A 9 KSKMIGIIIPD---LNNRFYAQIIDGIQEVIQKEGYTALISFST-------------------------NSDVKKY---- 56 (277)
T ss_dssp CCCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEECS-------------------------SCCHHHH----
T ss_pred CCCEEEEEeCC---CCChhHHHHHHHHHHHHHHCCCCEEEEEeC-------------------------CCChHHH----
Confidence 45789998421 2245777777666532 4555 555440 1122222
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech-------------------HHHHHHHHHhcCCCCcCCCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv-------------------e~t~~~l~~~g~k~~~~~~~ 215 (332)
.+.++.|.+.++|.|++.. ..++++. ..++|++-+- ..+++++. .|.
T Consensus 57 ~~~~~~l~~~~vdgiIi~~----~~~~~~~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~-~G~-------- 122 (277)
T 3hs3_A 57 QNAIINFENNNVDGIITSA----FTIPPNF-HLNTPLVMYDSANINDDIVRIVSNNTKGGKESIKLLS-KKI-------- 122 (277)
T ss_dssp HHHHHHHHHTTCSEEEEEC----CCCCTTC-CCSSCEEEESCCCCCSSSEEEEECHHHHHHHHHHTSC-TTC--------
T ss_pred HHHHHHHHhCCCCEEEEcc----hHHHHHH-hCCCCEEEEcccccCCCCEEEEEChHHHHHHHHHHHH-hCC--------
Confidence 2234567789999988876 2223332 3367776442 22333444 443
Q ss_pred ceEEEEechhh-----hchhhHHHHHHhcCCeEEe---cCccchhhchHHHHHHHhcCC-hHH----HHHHHHHHHHHHH
Q 020005 216 LRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVL---PDKATMEHTLIPALDALNRKD-VEG----ARNLLRIALQVLL 282 (332)
Q Consensus 216 ~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~---P~~~~q~~~l~~~i~~ik~g~-~~~----a~~~l~~~~~~L~ 282 (332)
+||++++.+.. .+..-|.+.++++|+++.. ......+ .+ -+.++++. .+. .......+++.+.
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~-~~---~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 198 (277)
T 3hs3_A 123 EKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEETPENNPYI-SA---QSALNKSNQFDAIITVNDLYAAEIIKEAK 198 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSCHHH-HH---HHHHHTGGGCSEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCCCccCCchHH-HH---HHHHcCCCCCCEEEECCHHHHHHHHHHHH
Confidence 49999975421 1233377889999987632 2211111 11 12233221 111 1223344555666
Q ss_pred hCCC----CEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 283 VRAV----NTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 283 ~~ga----d~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
+.|. |.-|.|+...+... ...+. +..|+ +...+++.+++.....-+
T Consensus 199 ~~g~~vP~di~vig~d~~~~~~-~~~p~-lttv~~~~~~~g~~av~~l~~~i~ 249 (277)
T 3hs3_A 199 RRNLKIPDDFQLVGYDNNILCG-YTSPT-ISTIDQNPKLIGQTAAHRLLDLMS 249 (277)
T ss_dssp HTTCCTTTTCEEECSBCCGGGG-TSSSC-CBEEECCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCceEEEeeCCcHHHh-cCCCC-ccEEecCHHHHHHHHHHHHHHHhc
Confidence 6663 78999999888532 22222 23443 667788888887776544
No 90
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=93.62 E-value=0.16 Score=47.04 Aligned_cols=109 Identities=10% Similarity=0.130 Sum_probs=65.3
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||--+...+ .+|++..+....+ ..+.-...|.+.+.+..... ..+.. .+.+.+.+
T Consensus 126 ~~~rIgVLaT~~T~~s-~~y~~~l~~~g~~--~~v~~~~~~~lv~~ie~~~~-----------~~~~~----~~~l~~~l 187 (285)
T 2jfn_A 126 ANGIVGLLATRGTVKR-SYTHELIARFANE--CQIEMLGSAEMVELAEAKLH-----------GEDVS----LDALKRIL 187 (285)
T ss_dssp SSSEEEEEECTTGGGC-HHHHHHHHHSCTT--SEEEEEECHHHHHHHHHHHH-----------TCCCC----HHHHHHHT
T ss_pred CCCEEEEEEcHHHHhh-HHHHHHHHHhCCC--CEEeCCCCHHHHHHHHhccc-----------CCHHH----HHHHHHHH
Confidence 4679999986666544 4577776654322 22222223332221111000 00112 22344445
Q ss_pred HHHHH--cCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 159 VFLEK--AGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~--~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
+.|.+ .|+|.|++.|--...+.+++++.. ++|+|+-.+++++++.+.
T Consensus 188 ~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a~a~~~~~~ 238 (285)
T 2jfn_A 188 RPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWL 238 (285)
T ss_dssp HHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHHHHHHHHHH
Confidence 55654 589999999987777789999877 499999999998877653
No 91
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=93.36 E-value=0.12 Score=47.86 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
.+.+.+.++.++++||++|++.|-..- ...+|.+.+++|+|+|.
T Consensus 172 a~~~i~rA~a~~eAGA~~ivlE~vp~~-~a~~It~~l~iP~igIG 215 (275)
T 3vav_A 172 AAQLLRDARAVEEAGAQLIVLEAVPTL-VAAEVTRELSIPTIGIG 215 (275)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCCHH-HHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCHH-HHHHHHHhCCCCEEEEc
Confidence 355667788999999999999999865 88999999999999984
No 92
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=93.29 E-value=1.1 Score=41.09 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCCC
Q 020005 159 VFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPL 210 (332)
Q Consensus 159 ~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~~ 210 (332)
+.|.+ .++++|+.+..+.... ..++.+..++|+|.. ...+++++.+.|++
T Consensus 75 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-- 152 (375)
T 4evq_A 75 TKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLK-- 152 (375)
T ss_dssp HCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCc--
Confidence 34544 4888888876654332 233444557787732 23456677777765
Q ss_pred cCCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
||++++.+... ...-|++.+++.|++++
T Consensus 153 ------~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 183 (375)
T 4evq_A 153 ------KAVTVTWKYAAGEEMVSGFKKSFTAGKGEVV 183 (375)
T ss_dssp ------EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ------EEEEEecCchHHHHHHHHHHHHHHHcCCeEE
Confidence 99999864432 24557888999999875
No 93
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=93.17 E-value=0.077 Score=49.74 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=65.1
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.|+.|-+||-.-....++.++|.....+....+++|.-. .+ ..+..=++.+.+.++
T Consensus 119 ~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aR-----------td-------------a~~~~gl~~ai~ra~ 174 (295)
T 1xg4_A 119 AKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMAR-----------TD-------------ALAVEGLDAAIERAQ 174 (295)
T ss_dssp SCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEE-----------EC-------------CHHHHCHHHHHHHHH
T ss_pred CcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEe-----------cH-------------HhhhcCHHHHHHHHH
Confidence 345555555445556677777777766542334443220 00 001101122445567
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee-echH------HHHHHHHHhcCC
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii-~Ive------~t~~~l~~~g~k 208 (332)
.++++|||+|++.|-+.-..+.++.+.+++|++ |+.+ .+.+++.+.|.+
T Consensus 175 ay~eAGAd~i~~e~~~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~ 230 (295)
T 1xg4_A 175 AYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVA 230 (295)
T ss_dssp HHHHTTCSEEEETTCCSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCS
T ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCC
Confidence 899999999999998644567888888999986 6653 356788888874
No 94
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=93.08 E-value=2.2 Score=38.85 Aligned_cols=161 Identities=14% Similarity=0.058 Sum_probs=82.9
Q ss_pred HHHHHHcC--CcEEEEeCCCchh---hHHHHhhhCCCCeeec---------------------------hHHHHHHHHH-
Q 020005 158 RVFLEKAG--ARCIVMPCHLSHI---WHDEVCKGCSVPFLHV---------------------------SECVAKELKE- 204 (332)
Q Consensus 158 ~~~Le~~G--ad~IvI~CNTaH~---~~d~l~~~~~iPii~I---------------------------ve~t~~~l~~- 204 (332)
++.|.+.+ +|.|++....... .++.+++ .++|++-+ ...+++++.+
T Consensus 54 i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 132 (332)
T 2rjo_A 54 IRALLQKTGGNLVLNVDPNDSADARVIVEACSK-AGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKS 132 (332)
T ss_dssp HHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHH-HTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHH-CCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHH
Confidence 34566677 9988876554332 3444433 35555432 3345566776
Q ss_pred -hcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHHHH-Hhc-C-ChHH---
Q 020005 205 -ANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPALDA-LNR-K-DVEG--- 269 (332)
Q Consensus 205 -~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i~~-ik~-g-~~~~--- 269 (332)
.|.+ ||++++.... .+..-|.+.++++ |+++.. ......+. -...++. +.. + +.+.
T Consensus 133 ~~G~~--------~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~aI~~ 203 (332)
T 2rjo_A 133 MGGKG--------GVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVADWNSQK-AFPIMQAWMTRFNSKIKGVWA 203 (332)
T ss_dssp TTTCE--------EEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHHGGGEEEEEE
T ss_pred cCCCC--------eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHH-HHHHHHHHHHhcCCCeeEEEE
Confidence 4554 9999985421 1233378889998 987542 11111110 1111222 222 2 1111
Q ss_pred -HHHHHHHHHHHHHhCCC--CEEEECCCCcccCCCC-CCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 270 -ARNLLRIALQVLLVRAV--NTVILASDDMQDLLPP-DDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 270 -a~~~l~~~~~~L~~~ga--d~VILGCTElpli~~~-~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.......+++.+.+.|. |.-|+|+...+..... ..+..+..|+ +...+++.+++.....
T Consensus 204 ~nd~~A~g~~~al~~~G~~~di~vvg~D~~~~~~~~~~~~~~lttv~~~~~~~g~~av~~l~~~ 267 (332)
T 2rjo_A 204 ANDDMALGAIEALRAEGLAGQIPVTGMDGTQPGLVAIKSGELVASVDWDPFWLGGIGLSMGLQA 267 (332)
T ss_dssp SSHHHHHHHHHHHHHTTCBTTBCEECSBCCHHHHHHHHTTSCCBEEECCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHcCCCCCCEEEeecCCHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 12233445666777776 7889999888754210 0111123333 4566677777666554
No 95
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=93.06 E-value=1.5 Score=38.61 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=82.0
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCceE
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~rV 218 (332)
+.|.+.++|.|++++......+.. .++|++-+ ...+++++.+.|.+ ||
T Consensus 54 ~~l~~~~vdgiI~~~~~~~~~~~~----~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~i 121 (280)
T 3gyb_A 54 TSALSMRPDGIIIAQDIPDFTVPD----SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLGHT--------HI 121 (280)
T ss_dssp HHHHTTCCSEEEEESCC------------CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTTCC--------SE
T ss_pred HHHHhCCCCEEEecCCCChhhHhh----cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCCCC--------eE
Confidence 456778999988666554333333 56776643 34566778877765 99
Q ss_pred EEEechhhh---chhhHHHHHHhcCCeEEe---cCccchhhchHHHH-HHHhcCC-hHH----HHHHHHHHHHHHHhCC-
Q 020005 219 GVLAKNAIL---TAGFYQEKLQHEGFEVVL---PDKATMEHTLIPAL-DALNRKD-VEG----ARNLLRIALQVLLVRA- 285 (332)
Q Consensus 219 GlLaT~~T~---~s~lY~~~l~~~Gi~vv~---P~~~~q~~~l~~~i-~~ik~g~-~~~----a~~~l~~~~~~L~~~g- 285 (332)
++++..... +..-|.+.++++|+++.. ......+. -...+ +.++++. .+. .......+++.+.+.|
T Consensus 122 ~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 200 (280)
T 3gyb_A 122 AHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHA-GYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGL 200 (280)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 999876432 233377888888876542 11111111 11112 2233321 111 1222333444455544
Q ss_pred ---CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 286 ---VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 286 ---ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
-|..|+|+...+... ...+. +..|+ +...+++.+++......+
T Consensus 201 ~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~av~~l~~~i~ 247 (280)
T 3gyb_A 201 RVPEDLSIIGYDNTPLAQ-TRLIN-LTTIDDNSIGVGYNAALLLLSMLD 247 (280)
T ss_dssp CTTTTCEEEEESCCHHHH-STTTC-CCEEECCHHHHHHHHHHHHHHHHC
T ss_pred CCCCeeEEEEECCchHhh-ccCCC-ceEEecCHHHHHHHHHHHHHHHHh
Confidence 478899999888432 11221 23333 556677777777766543
No 96
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=93.02 E-value=0.35 Score=44.86 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=51.8
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKP 209 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~ 209 (332)
+++|.+ .|+++|+-+..+.... .-.+.+..++|+|.. ...+++.+.+.|.+
T Consensus 63 ~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~- 141 (375)
T 3i09_A 63 AREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGK- 141 (375)
T ss_dssp HHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCc-
Confidence 344544 8999998886654432 334444557777764 23455666666665
Q ss_pred CcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
||+++..+... ....|++.+++.|++++.
T Consensus 142 -------~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 173 (375)
T 3i09_A 142 -------TWFFLTADYAFGKALEKNTADVVKANGGKVLG 173 (375)
T ss_dssp -------EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -------eEEEEecccHHHHHHHHHHHHHHHHcCCEEee
Confidence 99999865432 345578889999998753
No 97
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=93.01 E-value=1.3 Score=38.67 Aligned_cols=164 Identities=9% Similarity=0.078 Sum_probs=88.4
Q ss_pred HHHHHHHcC-CcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHh----cCC
Q 020005 157 KRVFLEKAG-ARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA----NMK 208 (332)
Q Consensus 157 ~~~~Le~~G-ad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~----g~k 208 (332)
.++.|.+.+ +|.|++...... ..++.+++ .++|++-+ ...+++++.+. |.+
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~ 128 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDLTPSVAQYRA-RNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKER 128 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHSCTTSCE
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHH-CCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhcCcCCCc
Confidence 345677788 999888664322 33455543 35665533 34566777777 654
Q ss_pred CCcCCCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHH-HHHhcC-ChHH----HHHHH
Q 020005 209 PLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPAL-DALNRK-DVEG----ARNLL 274 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l 274 (332)
||++++.... .+..-|.+.++++ |+++.. ......+. ....+ +.+.++ +.+. .....
T Consensus 129 --------~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a 199 (276)
T 3ksm_A 129 --------NIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGA-ARSEMLRLLKETPTIDGLFTPNESTT 199 (276)
T ss_dssp --------EEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHH-HHHHHHHHHHHCSCCCEEECCSHHHH
T ss_pred --------eEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHH-HHHHHHHHHHhCCCceEEEECCchhh
Confidence 9999975321 2233477888888 887653 22111111 11112 223333 2211 12333
Q ss_pred HHHHHHHHhCCC--CEEEECCCCcccCCCCC-CCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 275 RIALQVLLVRAV--NTVILASDDMQDLLPPD-DPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 275 ~~~~~~L~~~ga--d~VILGCTElpli~~~~-~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
..+++.+.+.|. |..|.|+...+...... .+.....|+ +...+++.+++.....-+
T Consensus 200 ~g~~~al~~~g~p~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~~~i~ 259 (276)
T 3ksm_A 200 IGALVAIRQSGMSKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGYLAVQRALDLVR 259 (276)
T ss_dssp HHHHHHHHHTTCTTSSEEEEESCCHHHHHHHHTTSSSEEEECCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHcCCceEEEEeCHHHhHHHHHHHHHHHHc
Confidence 445566667774 88899998887542211 111112333 556777777777766543
No 98
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=92.89 E-value=0.34 Score=44.79 Aligned_cols=106 Identities=8% Similarity=0.103 Sum_probs=62.5
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++|||||=-|-..+- +|++..+... ...++-...|.+-+.+. .+. .+.+...+.+.+.+
T Consensus 131 ~~~~IGVLaT~~Ti~s~-~Y~~~l~~~~---~~~V~~~~~~~lV~~IE-~g~--------------~~~~~~~~~~~~~l 191 (274)
T 3uhf_A 131 KNKEILVIATKATIKSE-EYQKRLLSQG---YTNINALATGLFVPMVE-EGI--------------FEGDFLQSAMEYYF 191 (274)
T ss_dssp TTSCEEEEECHHHHHHT-HHHHHHHTTT---CCCEEEEECTTHHHHHH-TTC--------------CSSHHHHHHHHHHH
T ss_pred CCCeEEEEeccccccHH-HHHHHHHHcC---CceEEecCCHHHHHHHH-cCC--------------CCCHHHHHHHHHHH
Confidence 46789999644333332 5655554432 22333333344332221 110 11122334444444
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhC--CCCeeechHHHHHHHHHh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~--~iPii~Ive~t~~~l~~~ 205 (332)
+.|. |+|.||+.|-=.-...+++++.. ++|+|+-.+++++.+.+.
T Consensus 192 ~~l~--g~D~iILGCTh~PlL~~~i~~~~~~~v~lIDs~~~~A~~~~~~ 238 (274)
T 3uhf_A 192 KNIT--TPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKER 238 (274)
T ss_dssp TTCC--CCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHHH
T ss_pred HHhc--CCCEEEECCCChHHHHHHHHHHcCCCCEEEcCHHHHHHHHHHH
Confidence 4454 99999999985555678888765 799999999999998875
No 99
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=92.88 E-value=0.14 Score=45.50 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEEEechhhh-chhhHHHHHHhc-------CCeEEe-cCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCC
Q 020005 217 RIGVLAKNAIL-TAGFYQEKLQHE-------GFEVVL-PDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVN 287 (332)
Q Consensus 217 rVGlLaT~~T~-~s~lY~~~l~~~-------Gi~vv~-P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad 287 (332)
+|||||=-+.. ...+|++..+.. .+.++. ..++-.+ ....+..+ .+.....+.+.++.|.+.|+|
T Consensus 3 ~iGiiGGmg~~at~~~~~~i~~~~~~~~d~~~~~~~~~~~~~i~~-----r~~~~~~~-~~~~~~~l~~~~~~l~~~g~d 76 (228)
T 1jfl_A 3 TIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPD-----RTAYILGK-GEDPRPQLIWTAKRLEECGAD 76 (228)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCC-----HHHHHTTS-SCCCHHHHHHHHHHHHHHTCS
T ss_pred eEEEecccCHHHHHHHHHHHHHHHHhhcCCccCcEeEEeCCCHHH-----HHHHHHcC-CchHHHHHHHHHHHHHHcCCC
Confidence 79999865554 345677665431 222222 1111111 11222222 334556777888888888999
Q ss_pred EEEECCCCcccCCCCC-CCCCCceechHHHHHHHHHH
Q 020005 288 TVILASDDMQDLLPPD-DPLLKKCIDPMDALARSTIK 323 (332)
Q Consensus 288 ~VILGCTElpli~~~~-~~~~ipvID~~~~lA~a~v~ 323 (332)
+||++|.=.+..++.. ....+|+|...+..++++..
T Consensus 77 ~iviaCnTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~ 113 (228)
T 1jfl_A 77 FIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKE 113 (228)
T ss_dssp EEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHHH
T ss_pred EEEEcCccHHHHHHHHHHhCCCCEechHHHHHHHHHH
Confidence 9999999876555442 22357999888777776653
No 100
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=92.86 E-value=2.1 Score=39.28 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=68.6
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHH--HhhhCCCCeeec-----------------------hHHHHHHHHHhcCCCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-HDE--VCKGCSVPFLHV-----------------------SECVAKELKEANMKPL 210 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~d~--l~~~~~iPii~I-----------------------ve~t~~~l~~~g~k~~ 210 (332)
++.|.+ .++++|+.+..+.... .-. +.+..++|+|.. ...+++.+.+.|.+
T Consensus 65 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~-- 142 (364)
T 3lop_A 65 VRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVT-- 142 (364)
T ss_dssp HHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcCCc--
Confidence 344554 4898888776654322 233 444557777653 23455667766665
Q ss_pred cCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEe----cCccchhhchHHHHHHHhcCChH-----HHHHHHHHHH
Q 020005 211 EAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL----PDKATMEHTLIPALDALNRKDVE-----GARNLLRIAL 278 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~ 278 (332)
||++++.+... ...-|++.+++.|++++. +.. ..+ +...+..++....+ ........++
T Consensus 143 ------~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d--~~~~~~~l~~~~~d~v~~~~~~~~a~~~~ 213 (364)
T 3lop_A 143 ------RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN-TAN--VGPAVDKLLAADVQAIFLGATAEPAAQFV 213 (364)
T ss_dssp ------CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT-SCC--CHHHHHHHHHSCCSEEEEESCHHHHHHHH
T ss_pred ------eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC-Ccc--HHHHHHHHHhCCCCEEEEecCcHHHHHHH
Confidence 99999875432 344578888888987642 111 111 22223444432211 1122334455
Q ss_pred HHHHhCCCCEEEECCCC
Q 020005 279 QVLLVRAVNTVILASDD 295 (332)
Q Consensus 279 ~~L~~~gad~VILGCTE 295 (332)
+.+.+.|.+.-++|...
T Consensus 214 ~~~~~~g~~~~~i~~~~ 230 (364)
T 3lop_A 214 RQYRARGGEAQLLGLSS 230 (364)
T ss_dssp HHHHHTTCCCEEEECTT
T ss_pred HHHHHcCCCCeEEEecc
Confidence 56666676666666554
No 101
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=92.83 E-value=0.45 Score=43.76 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------------hHHHHHHHHHhcCCCCc
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------------ve~t~~~l~~~g~k~~~ 211 (332)
+++|.. .++++|+-|..+.... ...+.+..++|+|.. ....++.+.+.|.+
T Consensus 64 ~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--- 140 (368)
T 4eyg_A 64 AQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIK--- 140 (368)
T ss_dssp HHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCC---
Confidence 344554 8999988776654332 334445567888754 23456667776665
Q ss_pred CCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
||+++..+... ...-|++.+++.|++++
T Consensus 141 -----~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~ 171 (368)
T 4eyg_A 141 -----KVATLTSDYAPGNDALAFFKERFTAGGGEIV 171 (368)
T ss_dssp -----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -----EEEEEecCchHhHHHHHHHHHHHHHcCCEEE
Confidence 99999865432 23557888999999875
No 102
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=92.80 E-value=1.9 Score=38.91 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=80.6
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCCCCcC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k~~~~ 212 (332)
++.|.+.++|.|++....... .++.+++ .++|++.+ ...+++++.+. |.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~---- 124 (313)
T 2h3h_A 50 LESFIAEGVNGIAIAPSDPTAVIPTIKKALE-MGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKG---- 124 (313)
T ss_dssp HHHHHHTTCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHHTSCS----
T ss_pred HHHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCeEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHcCCCC----
Confidence 445667899998876544332 3444433 46776543 33455667776 554
Q ss_pred CCCceEEEEechhh-----hchhhHHHHHHhcCCeEEe--cCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHH
Q 020005 213 GSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVVL--PDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQ 279 (332)
Q Consensus 213 ~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~ 279 (332)
||++++.... .+..-|.+.+++.|++++. ......+. -...+. .+.++ +.+. .......+++
T Consensus 125 ----~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 199 (313)
T 2h3h_A 125 ----KVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGAR-AVSLAEAALNAHPDLDAFFGVYAYNGPAQAL 199 (313)
T ss_dssp ----EEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHH-HHHHHHHHHHHCTTCCEEEECSTTHHHHHHH
T ss_pred ----EEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHH-HHHHHHHHHHHCcCceEEEEcCCCccHHHHH
Confidence 9999986421 1233477888888987642 21111111 111122 22222 1110 1112234455
Q ss_pred HHHhCCC--CEEEECCCCcccCCCCCC-CCCCceec-hHHHHHHHHHHHHHh
Q 020005 280 VLLVRAV--NTVILASDDMQDLLPPDD-PLLKKCID-PMDALARSTIKWVKS 327 (332)
Q Consensus 280 ~L~~~ga--d~VILGCTElpli~~~~~-~~~ipvID-~~~~lA~a~v~~a~~ 327 (332)
.+.+.|. |.-|.|+...+....... ......|+ +...+++.+++....
T Consensus 200 al~~~G~p~dv~vvg~d~~~~~~~~~~~g~~lttv~~~~~~~g~~av~~l~~ 251 (313)
T 2h3h_A 200 VVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYL 251 (313)
T ss_dssp HHHHTTCTTTSEEEEECCCHHHHHHHHHTSCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCeEEEEeCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 5666664 678888888774321110 01123333 445555666655543
No 103
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=92.79 E-value=4.8 Score=35.45 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=81.0
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec---------------------hHHHHHHHHHh------cC
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV---------------------SECVAKELKEA------NM 207 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I---------------------ve~t~~~l~~~------g~ 207 (332)
++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+. |.
T Consensus 51 ~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~ 129 (290)
T 2fn9_A 51 FDAIIAAGYDAIIFNPTDADGSIANVKRAKE-AGIPVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDA 129 (290)
T ss_dssp HHHHHHTTCSEEEECCSCTTTTHHHHHHHHH-TTCCEEEESSCCSCSSSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHcCCCEEEEecCChHHHHHHHHHHHH-CCCeEEEEecCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhcccCCcc
Confidence 34566778998877543322 23444443 34444321 34455667776 55
Q ss_pred CCCcCCCCce--EEEEech-h--h--hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHHH-HHhcC-ChHH----HH
Q 020005 208 KPLEAGSPLR--IGVLAKN-A--I--LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPALD-ALNRK-DVEG----AR 271 (332)
Q Consensus 208 k~~~~~~~~r--VGlLaT~-~--T--~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----a~ 271 (332)
+ | |++++.. . + .+..-|++.++++ |++++. ......+. -...++ .++++ +.+. ..
T Consensus 130 r--------~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~~d 200 (290)
T 2fn9_A 130 K--------EIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDT-AYKVTEQILQAHPEIKAIWCGND 200 (290)
T ss_dssp S--------CEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHH-HHHHHHHHHHHCTTCCEEEESSH
T ss_pred c--------ceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHH-HHHHHHHHHHhCCCCcEEEECCc
Confidence 4 7 7777642 1 1 1233377888888 887542 21111111 111122 23322 1111 12
Q ss_pred HHHHHHHHHHHhCCC-CEEEECCCCcccCCCCC-CCC-CCceec-hHHHHHHHHHHHHHhh
Q 020005 272 NLLRIALQVLLVRAV-NTVILASDDMQDLLPPD-DPL-LKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 272 ~~l~~~~~~L~~~ga-d~VILGCTElpli~~~~-~~~-~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
.....+++.+.+.|. |.-|.|+...+...... .+. .+..|+ +...+++.+++.....
T Consensus 201 ~~a~g~~~al~~~g~~dv~vig~d~~~~~~~~~~~p~~~lttv~~~~~~~g~~a~~~l~~~ 261 (290)
T 2fn9_A 201 AMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQY 261 (290)
T ss_dssp HHHHHHHHHHHHTTCTTCEEECCBCCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCeEEEEeCCCHHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHHH
Confidence 233445566777775 88899998887532110 111 023333 5566777777776554
No 104
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=92.65 E-value=0.96 Score=41.13 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=51.2
Q ss_pred HHHHHHc-CCcEEEEeCCCchhh-HHHHhhhCCCCeeech-----------------------HHHHHHHHHhcCCCCcC
Q 020005 158 RVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS-----------------------ECVAKELKEANMKPLEA 212 (332)
Q Consensus 158 ~~~Le~~-Gad~IvI~CNTaH~~-~d~l~~~~~iPii~Iv-----------------------e~t~~~l~~~g~k~~~~ 212 (332)
++.|.+. ++++|+.+..+.... ...+.+..++|+|... ..+++++.+.|++
T Consensus 61 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---- 136 (362)
T 3snr_A 61 ARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVK---- 136 (362)
T ss_dssp HHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCCCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCCccccCCCCcEEecCCChHHHHHHHHHHHHhcCCC----
Confidence 3455555 899999886654322 2333444578877642 3456677776665
Q ss_pred CCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 213 GSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 213 ~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
||+++...... ...-|++.+++.|++++
T Consensus 137 ----~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 167 (362)
T 3snr_A 137 ----TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIV 167 (362)
T ss_dssp ----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ----EEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 99999754332 33457888999999865
No 105
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=92.59 E-value=0.43 Score=44.43 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=51.1
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKP 209 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~ 209 (332)
+++|.+ .|+++|+-+..+.... .-.+.+..++|+|.. ...+++.+.+.|.+
T Consensus 65 ~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~- 143 (379)
T 3n0w_A 65 AREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYK- 143 (379)
T ss_dssp HHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCc-
Confidence 344444 8999998776654332 334444557777664 23455667666665
Q ss_pred CcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEe
Q 020005 210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~ 245 (332)
||+++..+... ....|++.+++.|++++.
T Consensus 144 -------~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 175 (379)
T 3n0w_A 144 -------TWFLMLPDAAYGDLMNAAIRRELTAGGGQIVG 175 (379)
T ss_dssp -------EEEEEEESSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred -------EEEEEecccchhHHHHHHHHHHHHHcCCEEEE
Confidence 99999865432 245578888888998753
No 106
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=92.54 E-value=2.3 Score=37.44 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=81.5
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS 214 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~ 214 (332)
++.|.+.++|.|++....... .++.+++ .++|++-+ ...+++++.+.|. +
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~i~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~------g 122 (271)
T 2dri_A 50 VQDLTVRGTKILLINPTDSDAVGNAVKMANQ-ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG------E 122 (271)
T ss_dssp HHHHTTTTEEEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHHC------T
T ss_pred HHHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCcEEEecCCCCCCceeEEEecChHHHHHHHHHHHHHHcC------C
Confidence 345667789988875433222 2344433 35665532 2345677777642 1
Q ss_pred CceEEEEechh-h----hchhhHHHHHHhcCCeEEe--cCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHHHH
Q 020005 215 PLRIGVLAKNA-I----LTAGFYQEKLQHEGFEVVL--PDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQVL 281 (332)
Q Consensus 215 ~~rVGlLaT~~-T----~~s~lY~~~l~~~Gi~vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~~L 281 (332)
.+||++++.+. . .+..=|++.++++|+++.. ......+. -...++ .+..+ +++. .......+++.+
T Consensus 123 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al 201 (271)
T 2dri_A 123 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIK-GLNVMQNLLTAHPDVQAVFAQNDEMALGALRAL 201 (271)
T ss_dssp TCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEecCCCCCHHH-HHHHHHHHHHhCCCccEEEECCCcHHHHHHHHH
Confidence 24999997432 1 1223378889999987542 22111111 111122 23322 1111 122233444555
Q ss_pred HhCCC-CEEEECCCCcccCCCC--CCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 282 LVRAV-NTVILASDDMQDLLPP--DDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 282 ~~~ga-d~VILGCTElpli~~~--~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
.+.|. |.-|.|....+..... ..+ ....|+ +...+++.+++......
T Consensus 202 ~~~g~~dv~vvGfD~~~~~~~~~~~~p-~lttv~~~~~~~g~~a~~~l~~~i 252 (271)
T 2dri_A 202 QTAGKSDVMVVGFDGTPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADKVL 252 (271)
T ss_dssp HHHTCCSCEEEEEECCHHHHHHHHTTS-SCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCcEEEEecCCHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHHH
Confidence 55554 7788888777754211 012 123343 56677777777765543
No 107
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=92.47 E-value=5.2 Score=35.10 Aligned_cols=162 Identities=7% Similarity=-0.036 Sum_probs=82.3
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCCeeec--------------------hHHHHHHHHHh-c-CCCCcC
Q 020005 158 RVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHV--------------------SECVAKELKEA-N-MKPLEA 212 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~-g-~k~~~~ 212 (332)
++.|.+.++|.|++....... .++.+.+ .++|++-+ ...+++++.+. | .+
T Consensus 58 ~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~---- 132 (289)
T 3brs_A 58 IEEAIKRKPDVILLAAADYEKTYDAAKEIKD-AGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKNLVRKSG---- 132 (289)
T ss_dssp HHHHHHTCCSEEEECCSCTTTTHHHHTTTGG-GTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHHHTSSSC----
T ss_pred HHHHHHhCCCEEEEeCCChHHhHHHHHHHHH-CCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHHHcCCCc----
Confidence 455777899998886554332 2333322 35665532 34456777775 4 54
Q ss_pred CCCceEEEEechhh-----hchhhHHHHHHhcCCeEE--ecCccchhhchHHHHH-HHhcC-ChHH----HHHHHHHHHH
Q 020005 213 GSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV--LPDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRIALQ 279 (332)
Q Consensus 213 ~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv--~P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~~~~ 279 (332)
||++++.... .+..-|.+.++++|..+. .......+. -...+. .+..+ +.+. .......+++
T Consensus 133 ----~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 207 (289)
T 3brs_A 133 ----KIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDK-AYDGTVELLTKYPDISVMVGLNQYSATGAAR 207 (289)
T ss_dssp ----EEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHH-HHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred ----eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeeecCCCCHHH-HHHHHHHHHHhCCCceEEEECCCcchHHHHH
Confidence 9999975421 123347788888886532 111111111 111122 23322 2211 1223334455
Q ss_pred HHHhCCC--CEEEECCCCcccCCCCCCCCCC-ceec-hHHHHHHHHHHHHHhhc
Q 020005 280 VLLVRAV--NTVILASDDMQDLLPPDDPLLK-KCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 280 ~L~~~ga--d~VILGCTElpli~~~~~~~~i-pvID-~~~~lA~a~v~~a~~~~ 329 (332)
.+.+.|. |.-|.|+...+.......+..+ ..|+ +...+++.+++......
T Consensus 208 al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~~~i 261 (289)
T 3brs_A 208 AIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKALKLL 261 (289)
T ss_dssp HHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHHHHHh
Confidence 6666664 6888899888763322221122 3343 55667777777665543
No 108
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=92.08 E-value=0.19 Score=47.64 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee-echH------HHHHHHHHhcCC
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii-~Ive------~t~~~l~~~g~k 208 (332)
.+.+.++.++++|||+|++.|-..-..+.++.+.+++|++ ++.+ .+.+++.+.|.+
T Consensus 190 ~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~eL~~lGv~ 252 (318)
T 1zlp_A 190 EGIRRANLYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEFKEMGFH 252 (318)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCe
Confidence 3455667899999999999997644667889999999986 6653 246778888874
No 109
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=91.78 E-value=0.99 Score=41.52 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=50.9
Q ss_pred HHHHHHc-CCcEEEEeCCCchhh-HHHHhhhCCCCeeec---------------------------hHHHHHHHHHhcCC
Q 020005 158 RVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHV---------------------------SECVAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~~-Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I---------------------------ve~t~~~l~~~g~k 208 (332)
++.|.+. ++++|+.|..+.... .-.+.+..++|+|.. ....++++.+.|.+
T Consensus 81 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 160 (386)
T 3sg0_A 81 ARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAK 160 (386)
T ss_dssp HHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 3445555 899988776653322 334445567887763 23456667776665
Q ss_pred CCcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 209 PLEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
||+++..+... ...-|++.+++.|++++
T Consensus 161 --------~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 191 (386)
T 3sg0_A 161 --------KVGYIGFSDAYGEGYYKVLAAAAPKLGFELT 191 (386)
T ss_dssp --------EEEEEEESSHHHHHHHHHHHHHHHHHTCEEC
T ss_pred --------EEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 99999754432 34557888998998875
No 110
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=91.57 E-value=1.3 Score=38.61 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH---HHHHHHHhcCCCCcCCCCceEEEEechhhhch-hh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC---VAKELKEANMKPLEAGSPLRIGVLAKNAILTA-GF 231 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~---t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s-~l 231 (332)
..++.+ +.|+|+|+=--.| .+.|++.+++||+.|--. ..+.+++..- .++|||+++-...+.. ..
T Consensus 43 ~~a~~~-~~~~dVIISRGgt----a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~------~~~kIavvg~~~~~~~~~~ 111 (196)
T 2q5c_A 43 KIAFGL-QDEVDAIISRGAT----SDYIKKSVSIPSISIKVTRFDTMRAVYNAKR------FGNELALIAYKHSIVDKHE 111 (196)
T ss_dssp HHHHHH-TTTCSEEEEEHHH----HHHHHTTCSSCEEEECCCHHHHHHHHHHHGG------GCSEEEEEEESSCSSCHHH
T ss_pred HHHHHh-cCCCeEEEECChH----HHHHHHhCCCCEEEEcCCHhHHHHHHHHHHh------hCCcEEEEeCcchhhHHHH
Confidence 345567 8999977655444 456788899999987211 1222222211 1238999998777643 33
Q ss_pred HHHHHHhcCCeE
Q 020005 232 YQEKLQHEGFEV 243 (332)
Q Consensus 232 Y~~~l~~~Gi~v 243 (332)
+.+.| |+++
T Consensus 112 ~~~ll---~~~i 120 (196)
T 2q5c_A 112 IEAML---GVKI 120 (196)
T ss_dssp HHHHH---TCEE
T ss_pred HHHHh---CCce
Confidence 44444 5544
No 111
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=91.57 E-value=0.2 Score=46.71 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH------HHHHHHHHhcCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE------CVAKELKEANMK 208 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive------~t~~~l~~~g~k 208 (332)
.+.++.++++|||+|++.|-..-..+.++.+.+++|++ |++ .+.+++.+.|.+
T Consensus 171 i~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~i-i~~~g~~~~~~~~eL~~lGv~ 229 (287)
T 3b8i_A 171 IQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLM-LVTYGNPQLRDDARLARLGVR 229 (287)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHTTCCSCEE-EECTTCGGGCCHHHHHHTTEE
T ss_pred HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhCCCCEE-EeCCCCCCCCCHHHHHHcCCc
Confidence 44567799999999999997644667899999999999 753 357888888873
No 112
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=91.43 E-value=0.31 Score=44.90 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
.+.+.+.++.++++||+.|++.|-.. ....+|.+.+++|+|+|.
T Consensus 160 a~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG 203 (264)
T 1m3u_A 160 GDQLLSDALALEAAGAQLLVLECVPV-ELAKRITEALAIPVIGIG 203 (264)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCcEEEEecCCH-HHHHHHHHhCCCCEEEeC
Confidence 35566778899999999999999874 667899999999999984
No 113
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=91.39 E-value=0.71 Score=41.05 Aligned_cols=164 Identities=10% Similarity=0.029 Sum_probs=84.7
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
.++.|.+.++|.|++...... ..++.+++. ++|++-+ ...+++++.+.|..
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~----- 134 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL-GIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVN----- 134 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH-TCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHSTT-----
T ss_pred HHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC-CCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhCC-----
Confidence 345677889998887665432 234554432 5665543 44566778887751
Q ss_pred CCceEEEEec---------hhhhchhhHHHHHHhcCCe--EEe--cCccchhhchHHHH-HHHhcC-ChHH----HHHHH
Q 020005 214 SPLRIGVLAK---------NAILTAGFYQEKLQHEGFE--VVL--PDKATMEHTLIPAL-DALNRK-DVEG----ARNLL 274 (332)
Q Consensus 214 ~~~rVGlLaT---------~~T~~s~lY~~~l~~~Gi~--vv~--P~~~~q~~~l~~~i-~~ik~g-~~~~----a~~~l 274 (332)
.+||++++. ....+..-|.+.++++|++ ++. ......+. -...+ +.+.++ +++. ... .
T Consensus 135 -~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~-a 211 (304)
T 3gbv_A 135 -DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIE-DSRMLDDFFREHPDVKHGITFNSK-V 211 (304)
T ss_dssp -CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSC-HHHHHHHHHHHCTTCCEEEESSSC-T
T ss_pred -CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHH-HHHHHHHHHHhCCCeEEEEEcCcc-h
Confidence 239999972 1122333477888888754 321 11111111 11112 223322 1111 111 2
Q ss_pred HHHHHHHHhCCC-CEEEECCCCcccCCCCCCCCCC--ceechHHHHHHHHHHHHHhhc
Q 020005 275 RIALQVLLVRAV-NTVILASDDMQDLLPPDDPLLK--KCIDPMDALARSTIKWVKSAE 329 (332)
Q Consensus 275 ~~~~~~L~~~ga-d~VILGCTElpli~~~~~~~~i--pvID~~~~lA~a~v~~a~~~~ 329 (332)
..+++.+.+.|. |..|.|+...+.......+... .+-=+...+++.+++......
T Consensus 212 ~g~~~al~~~g~~di~vig~d~~~~~~~~~~~~~~~~tv~~~~~~~g~~av~~l~~~i 269 (304)
T 3gbv_A 212 YIIGEYLQQRRKSDFSLIGYDLLERNVTCLKEGTVSFLIAQQPELQGFNSIKTLCDHL 269 (304)
T ss_dssp HHHHHHHHHTTCCSCEEEEESCCHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 345566667775 8889998888763221111111 222356667777777766543
No 114
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=91.35 E-value=1.5 Score=40.85 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=50.1
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKP 209 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~ 209 (332)
+++|.. .|+++|+-|..+.... .-.+.+..++|+|.. ....++.+.+.+.
T Consensus 65 ~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~-- 142 (387)
T 3i45_A 65 AQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPI-- 142 (387)
T ss_dssp HHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSC--
T ss_pred HHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCC--
Confidence 344544 5999999887664432 344555668888873 1233444444444
Q ss_pred CcCCCCceEEEEechhhh---chhhHHHHHHhc--CCeEEe
Q 020005 210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHE--GFEVVL 245 (332)
Q Consensus 210 ~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~--Gi~vv~ 245 (332)
+||+++..+... ....|++.+++. |++++.
T Consensus 143 ------~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~ 177 (387)
T 3i45_A 143 ------TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVA 177 (387)
T ss_dssp ------CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ------CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEe
Confidence 399999965432 234578888888 888753
No 115
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=91.33 E-value=0.3 Score=45.79 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=66.4
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.|+.|-++|-.-..+.++.+||.....+.+..+++|.-..+ -+. ...+-+ ..+-++
T Consensus 123 ~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTD-----------a~~------------~~glde-ai~Ra~ 178 (298)
T 3eoo_A 123 QKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTD-----------AAA------------AEGIDA-AIERAI 178 (298)
T ss_dssp CCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC-----------THH------------HHHHHH-HHHHHH
T ss_pred CcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeeh-----------hhh------------hcCHHH-HHHHHH
Confidence 45566666655667788999997766554345666544111 100 011222 223345
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee-echHH------HHHHHHHhcCC
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSEC------VAKELKEANMK 208 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii-~Ive~------t~~~l~~~g~k 208 (332)
...++|||+|.++|-+.-.-+.++.+.+++|++ ++++- +.+++.+.|.+
T Consensus 179 ay~~AGAD~if~~~~~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL~~lGv~ 234 (298)
T 3eoo_A 179 AYVEAGADMIFPEAMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGANVD 234 (298)
T ss_dssp HHHHTTCSEEEECCCCSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHHHHTTCC
T ss_pred hhHhcCCCEEEeCCCCCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHHHHcCCe
Confidence 677899999999998744557788888889974 66542 46788888874
No 116
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=91.31 E-value=1.5 Score=38.47 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=77.9
Q ss_pred HHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 159 VFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
+.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|.+ ||++
T Consensus 49 ~~l~~~~vdgiI~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~i~~ 119 (276)
T 2h0a_A 49 NTTLAYLTDGLILASYDLTERFEEGRLP-TERPVVLVDAQNPRYDSVYLDNRLGGRLAGAYLARFPGP--------IFAI 119 (276)
T ss_dssp -----CCCSEEEEESCCCC------CCS-CSSCEEEESSCCTTSEEEEECSHHHHHHHHHHHTTSSSC--------EEEE
T ss_pred HHHHhCCCCEEEEecCCCCHHHHHHHhh-cCCCEEEEeccCCCCCEEEEccHHHHHHHHHHHHHcCCC--------eEEE
Confidence 4566789999887654333 34444433 47887754 23455556555544 9999
Q ss_pred Eechh-h---------hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHH
Q 020005 221 LAKNA-I---------LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQV 280 (332)
Q Consensus 221 LaT~~-T---------~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~ 280 (332)
++... . .+..-|.+.++++|+++ +.......+. -...+. .++.+. .+. .......+++.
T Consensus 120 i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 198 (276)
T 2h0a_A 120 AVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEG-GRLALRHFLEKASPPLNVFAGADQVALGVLEE 198 (276)
T ss_dssp EECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHH-HHHHHHHHHTTCCSSEEEECSSHHHHHHHHHH
T ss_pred EecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHH
Confidence 98653 2 12233778888888753 2221111111 111222 233332 211 12333445566
Q ss_pred HHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 281 LLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 281 L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
+.+.| -|.-|.|+...+... ... +..|+ +...+++.+++.....
T Consensus 199 l~~~g~~vP~di~vvg~d~~~~~~-~~~---lttv~~~~~~~g~~a~~~l~~~ 247 (276)
T 2h0a_A 199 AVRLGLTPGRDVRVLGFDGHPFAE-EAG---LSTIAQPVEAMGARAAQLLLER 247 (276)
T ss_dssp HHTTSCTTTTSEEEEEESCCTHHH-HHT---CEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCeEEEEeCCCchhh-hcc---eeEecCCHHHHHHHHHHHHHHH
Confidence 66666 467888888776421 111 23444 5667777777776654
No 117
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=91.30 E-value=3.8 Score=38.09 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=51.8
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeee------------------chHHHHHHHHHhcCCCCcCCCCceE
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH------------------VSECVAKELKEANMKPLEAGSPLRI 218 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~------------------Ive~t~~~l~~~g~k~~~~~~~~rV 218 (332)
+.+|.+.|+.+|+=|.++.... ...+.+..++|+|+ ...+.++.++..+.+ +|
T Consensus 53 ~~~li~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~~~~~~~~~~~~p~~~~a~~~~~~~~gw~--------~v 124 (376)
T 3hsy_A 53 FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD--------KF 124 (376)
T ss_dssp HHHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCCCSCCTTEEECSCCCHHHHHHHHHHTTCC--------EE
T ss_pred HHHHHhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCCCcccCCceEEeCccHHHHHHHHHHhcCCC--------EE
Confidence 3445556899888777664443 46666777888875 345667777766665 99
Q ss_pred EEEechhhhch---hhHHHHHHhcCCeEE
Q 020005 219 GVLAKNAILTA---GFYQEKLQHEGFEVV 244 (332)
Q Consensus 219 GlLaT~~T~~s---~lY~~~l~~~Gi~vv 244 (332)
+++. +...-. ..+.+.+++.|.+++
T Consensus 125 aii~-d~~~g~~~~~~~~~~~~~~g~~v~ 152 (376)
T 3hsy_A 125 AYLY-DSDRGLSTLQAVLDSAAEKKWQVT 152 (376)
T ss_dssp EEEE-CSTTCSHHHHHHHHHHHHHTCEEE
T ss_pred EEEE-eCchhHHHHHHHHHHhhhcCCeEE
Confidence 9999 543322 335566777898876
No 118
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=91.20 E-value=1.3 Score=39.17 Aligned_cols=159 Identities=12% Similarity=0.149 Sum_probs=85.3
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec-----------------hHHHHHHHHHhcCCCCcCCCCceEEEE
Q 020005 160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGVL 221 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I-----------------ve~t~~~l~~~g~k~~~~~~~~rVGlL 221 (332)
.|.+.++|.|++........ +.+.. ..++|++-+ ...+++++.+.|.+ ||+++
T Consensus 63 ~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~i~~i 133 (289)
T 3g85_A 63 ISKENSFDAAIIANISNYDLEYLNKA-SLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFAKKRYK--------SAAAI 133 (289)
T ss_dssp GSTTTCCSEEEESSCCHHHHHHHHHC-CCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHHHTTCC--------BCEEE
T ss_pred HHhccCCCEEEEecCCcccHHHHHhc-cCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHHHcCCC--------EEEEE
Confidence 35567888887766543321 22221 346777654 45567778887765 99999
Q ss_pred echhh-----hchhhHHHHHHhcCCeE----EecCccchhhchHHHHH-HHhcCC-hHH----HHHHHHHHHHHHHhCC-
Q 020005 222 AKNAI-----LTAGFYQEKLQHEGFEV----VLPDKATMEHTLIPALD-ALNRKD-VEG----ARNLLRIALQVLLVRA- 285 (332)
Q Consensus 222 aT~~T-----~~s~lY~~~l~~~Gi~v----v~P~~~~q~~~l~~~i~-~ik~g~-~~~----a~~~l~~~~~~L~~~g- 285 (332)
+.... .+..-|.+.++++|+++ +.......+. ....+. .++.+. .+. .......+++.+.+.|
T Consensus 134 ~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 212 (289)
T 3g85_A 134 LTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHG-GVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQI 212 (289)
T ss_dssp ECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHH-HHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred eCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHH-HHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCC
Confidence 85431 12334788899988763 2222221211 111222 233332 111 1223344555666665
Q ss_pred ---CCEEEECCC--CcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 286 ---VNTVILASD--DMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 286 ---ad~VILGCT--Elpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
-|.-|+|+. +.++.... .+ .+..|+ +...+++.+++......+
T Consensus 213 ~vP~di~vig~d~~~~~~~~~~-~p-~lttv~~~~~~~g~~a~~~l~~~i~ 261 (289)
T 3g85_A 213 SIPDDIEIVAIGMNDREYTEFS-TP-PVTIVDIPIEEMAGTCISLVEKLIN 261 (289)
T ss_dssp CTTTTCEEEEEECSCHHHHHSS-SS-CCEEEECCHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEeCCCCcchhhcc-CC-CCeEEcCCHHHHHHHHHHHHHHHHh
Confidence 478899988 77753211 12 123343 556777777777766533
No 119
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=91.18 E-value=0.28 Score=45.46 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
+.+.+.++.++++||+.|++.|-.. ....+|.+.+++|+|+|.
T Consensus 161 ~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG 203 (275)
T 1o66_A 161 QALLNDAKAHDDAGAAVVLMECVLA-ELAKKVTETVSCPTIGIG 203 (275)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEEC
Confidence 4456677889999999999999874 567899999999999984
No 120
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=91.07 E-value=1.2 Score=39.83 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=88.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
.++.|.+.++|.|++........++.+. ..++|++-+ ...+++++.+.|++
T Consensus 62 ~~~~l~~~~vdGiIi~~~~~~~~~~~~~-~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~-------- 132 (301)
T 3miz_A 62 IWKMFQSHRIDGVLYVTMYRRIVDPESG-DVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLERGHR-------- 132 (301)
T ss_dssp HHHHHHHTTCSEEEEEEEEEEECCCCCT-TCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHTTTCC--------
T ss_pred HHHHHHhCCCCEEEEecCCccHHHHHHH-hCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHHcCCC--------
Confidence 3456778899988876543322222222 236666543 34566777777765
Q ss_pred eEEEEechhh-----hchhhHHHHHHhcCCeE----EecC---ccchhhch-HHHH-HHHhcCC-hHH----HHHHHHHH
Q 020005 217 RIGVLAKNAI-----LTAGFYQEKLQHEGFEV----VLPD---KATMEHTL-IPAL-DALNRKD-VEG----ARNLLRIA 277 (332)
Q Consensus 217 rVGlLaT~~T-----~~s~lY~~~l~~~Gi~v----v~P~---~~~q~~~l-~~~i-~~ik~g~-~~~----a~~~l~~~ 277 (332)
||++++.... .+..-|.+.++++|+++ +... ....+... ...+ +.++.+. .+. .......+
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~ 212 (301)
T 3miz_A 133 RIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQI 212 (301)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHHHH
T ss_pred eEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHHHH
Confidence 9999985432 12333778888888753 3322 11111101 0122 3344332 211 12334455
Q ss_pred HHHHHhCCC----CEEEECCCCcc-cCCCCCCCCCCceec-hHHHHHHHHHHHHHhhcc
Q 020005 278 LQVLLVRAV----NTVILASDDMQ-DLLPPDDPLLKKCID-PMDALARSTIKWVKSAEK 330 (332)
Q Consensus 278 ~~~L~~~ga----d~VILGCTElp-li~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~~ 330 (332)
++.+.+.|. |.-|.|+...+ ... ...+. +..|+ +...+++.+++.....-+
T Consensus 213 ~~al~~~g~~vP~di~vig~D~~~~~~~-~~~p~-lttv~~~~~~~g~~av~~l~~~i~ 269 (301)
T 3miz_A 213 YIAAMALGLRIPQDVSIVGFDDFRTVTM-ALKPE-LTTAALPYYDLGREGAKWLNDLIA 269 (301)
T ss_dssp HHHHHTTTCCHHHHCEEECSBCCHHHHT-TSSSC-CBEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCeeEEEeCCcHHHhc-cCCCC-eeEEecCHHHHHHHHHHHHHHHhc
Confidence 667777774 67899999888 432 22221 23343 566777777877766543
No 121
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=90.73 E-value=3.3 Score=37.02 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec-----------------------hHHHHHHHHHhcCCCCc
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I-----------------------ve~t~~~l~~~g~k~~~ 211 (332)
++.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|.
T Consensus 51 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~---- 125 (306)
T 2vk2_A 51 VRSFVAQGVDAIFIAPVVATGWEPVLKEAKD-AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN---- 125 (306)
T ss_dssp HHHHHHHTCSEEEECCSSSSSCHHHHHHHHH-TTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHcCCCEEEEeCCChhhHHHHHHHHHH-CCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcC----
Confidence 45566789999887654322 34555543 35665532 2345667777661
Q ss_pred CCCCceEEEEechhh-----hchhhHHHHHHhcCC-eEEe--cCccchhhchHHHHH-HHhcC----ChHH----HHHHH
Q 020005 212 AGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGF-EVVL--PDKATMEHTLIPALD-ALNRK----DVEG----ARNLL 274 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi-~vv~--P~~~~q~~~l~~~i~-~ik~g----~~~~----a~~~l 274 (332)
+..+||++++.+.. .+..-|.+.++++|. +++. ......+. -...+. .++.. ..+. .....
T Consensus 126 -g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~ai~~~nd~~A 203 (306)
T 2vk2_A 126 -GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSK-GKEVMESFIKAENNGKNICMVYAHNDDMV 203 (306)
T ss_dssp -TSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHTTTTTTCCEEEESSHHHH
T ss_pred -CCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCCeEEEEeccCCCcHHH-HHHHHHHHHHhCCCCCCeeEEEECCchHH
Confidence 11249999976421 122337788888885 4332 22111111 111122 23322 2211 12233
Q ss_pred HHHHHHHHhCCC----CEEEECCCCccc
Q 020005 275 RIALQVLLVRAV----NTVILASDDMQD 298 (332)
Q Consensus 275 ~~~~~~L~~~ga----d~VILGCTElpl 298 (332)
..+++.+.+.|. |.-|.|+...+.
T Consensus 204 ~g~~~al~~~G~~vP~di~vig~D~~~~ 231 (306)
T 2vk2_A 204 IGAIQAIKEAGLKPGKDILTGSIDGVPD 231 (306)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEEECCHH
T ss_pred HHHHHHHHHcCCCCCCCeEEEeecCCHH
Confidence 345566666664 778889888774
No 122
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=90.65 E-value=0.32 Score=45.20 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
+.+.+.++.++++||+.|++.|-.. ....+|.+.+++|+|+|.
T Consensus 179 ~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG 221 (281)
T 1oy0_A 179 EQTIADAIAVAEAGAFAVVMEMVPA-ELATQITGKLTIPTVGIG 221 (281)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEeC
Confidence 5566778899999999999999874 567899999999999984
No 123
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=90.60 E-value=6.8 Score=34.29 Aligned_cols=124 Identities=9% Similarity=-0.001 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCCeEE-ecCccchhhchHHHHHH-Hhc-C-
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGFEVV-LPDKATMEHTLIPALDA-LNR-K- 265 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi~vv-~P~~~~q~~~l~~~i~~-ik~-g- 265 (332)
...+++++.+.|.+ ||++++.+.. .+..-|.+.++++|+++. .......+. -...+.. +++ +
T Consensus 106 ~~~a~~~L~~~G~~--------~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 176 (277)
T 3cs3_A 106 ATQAIEQFVNVGSK--------KVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPS-GYAAAKKILSQPQT 176 (277)
T ss_dssp HHHHHHHHHHTTCS--------CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHH-HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHcCCc--------eEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhH-HHHHHHHHHhcCCC
Confidence 34466777777665 9999986432 123347788888898753 222111111 1112333 333 2
Q ss_pred ChHH----HHHHHHHHHHHHHhCC----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhhc
Q 020005 266 DVEG----ARNLLRIALQVLLVRA----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSAE 329 (332)
Q Consensus 266 ~~~~----a~~~l~~~~~~L~~~g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~~ 329 (332)
+.+. .......+++.+.+.| -|..|.|+...+... ...+. +..|+ +...+++.+++.....-
T Consensus 177 ~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~i 247 (277)
T 3cs3_A 177 EPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNSELGA-FVQPR-LATIAYSKHRWGMVAAEKIIHLM 247 (277)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCCHHHH-HSSSC-CBEEECCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCCcHHHh-ccCCc-eeEEecCHHHHHHHHHHHHHHHh
Confidence 2221 1233445566677666 478899998887531 11221 23443 55677777777766553
No 124
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=90.25 E-value=0.59 Score=42.92 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHh
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA 205 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~ 205 (332)
.+.+.+.++.|.+.|+|.||+.|-=...+.+++++..++|+|+-.+.+++++.+.
T Consensus 195 ~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~~A~~~~~~ 249 (268)
T 3s81_A 195 QALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRW 249 (268)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHHHHHHHHHH
Confidence 4556677778888999999999985555567767778999999999999988875
No 125
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=90.10 E-value=3 Score=38.67 Aligned_cols=79 Identities=14% Similarity=0.019 Sum_probs=47.7
Q ss_pred HHHHHH-cCCcEEEEeCCCchh-hHHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFLEK-AGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~-~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
++.|.+ .++++|+.+..+... ..-.+.+..++|+|.+ ...+++++.+.+.+
T Consensus 67 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~----- 141 (385)
T 1pea_A 67 AEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGE----- 141 (385)
T ss_dssp HHHHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHTTTCS-----
T ss_pred HHHHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccCccCCCCEEEecCChHHhHHHHHHHHHHccCc-----
Confidence 345554 899999887654322 1222333456666543 23455666665544
Q ss_pred CCceEEEEechhh---hchhhHHHHHHhcCCeEE
Q 020005 214 SPLRIGVLAKNAI---LTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 214 ~~~rVGlLaT~~T---~~s~lY~~~l~~~Gi~vv 244 (332)
||++++.+.. -...-|++.++++|++++
T Consensus 142 ---~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 172 (385)
T 1pea_A 142 ---RVVFIGSDYIYPRESNHVMRHLYRQHGGTVL 172 (385)
T ss_dssp ---EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ---EEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 9999986432 123457888999999865
No 126
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=89.79 E-value=5.3 Score=36.23 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=80.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCceEE
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
++.|.+.++|.|+++.+... +.++ ..++|++-+ ...+++++.+.|++ ||+
T Consensus 109 ~~~l~~~~vdgiI~~~~~~~---~~l~-~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I~ 176 (330)
T 3ctp_A 109 LEVLQSHRVAGIIASRSQCE---DEYA-NIDIPVVAFENHILDNIITISSDNYNGGRMAFDHLYEKGCR--------KIL 176 (330)
T ss_dssp HHHHHHTTCSEEEEETCCCS---GGGT-TCCSCEEEESSCCCTTSCEEEECHHHHHHHHHHHHHHTTCC--------SEE
T ss_pred HHHHHhCCCCEEEECCCCCH---HHHH-hcCCCEEEEeccCCCCCCEEEeCHHHHHHHHHHHHHHCCCC--------eEE
Confidence 45577789998884433221 2333 346676533 23456777777765 999
Q ss_pred EEechhh-----hchhhHHHHHHhcCCeE---EecCccchh---hchHHHHHHHhcCChH----HHHHHHHHHHHHHHhC
Q 020005 220 VLAKNAI-----LTAGFYQEKLQHEGFEV---VLPDKATME---HTLIPALDALNRKDVE----GARNLLRIALQVLLVR 284 (332)
Q Consensus 220 lLaT~~T-----~~s~lY~~~l~~~Gi~v---v~P~~~~q~---~~l~~~i~~ik~g~~~----~a~~~l~~~~~~L~~~ 284 (332)
+++.+.. .+..-|.+.++++|+++ +.......+ ..+. +.++....+ ........+++.+.+.
T Consensus 177 ~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~ai~~~~d~~A~g~~~al~~~ 253 (330)
T 3ctp_A 177 HIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVKMLEEDIN---SMKDIVNYDGIFVFNDIAAATVMRALKKR 253 (330)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGGGGGCCCT---TGGGGGGSSEEEESSHHHHHHHHHHHHHT
T ss_pred EEeCCccCccHHHHHHHHHHHHHHcCCCcceeEEcCCCCHHHHHHHHH---HHhcCCCCcEEEECCHHHHHHHHHHHHHc
Confidence 9986431 12233788899998753 222211111 1111 111110111 0112233455566666
Q ss_pred C----CCEEEECCCCcccCCCCCCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 285 A----VNTVILASDDMQDLLPPDDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 285 g----ad~VILGCTElpli~~~~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
| -|.-|.|+...+... ...+. +..|+ +...+++.+++.....
T Consensus 254 G~~vP~disvvg~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~ 300 (330)
T 3ctp_A 254 GVSIPQEVQIIGFDNSFIGE-LLYPS-LTTINQPIEALAYTIIELLIKI 300 (330)
T ss_dssp TCCTTTTCEEECSBCCTHHH-HSSSC-CBEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECChHHHh-cCCCC-cceEECCHHHHHHHHHHHHHHH
Confidence 6 377889998877531 11221 24444 5667777777766554
No 127
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=88.96 E-value=5.6 Score=36.08 Aligned_cols=159 Identities=14% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHHHcCCcEEEEeCCCc--hhhHHHHhhhCCCCeeec--------------------------hHHHHHHHHHh-c-C
Q 020005 158 RVFLEKAGARCIVMPCHLS--HIWHDEVCKGCSVPFLHV--------------------------SECVAKELKEA-N-M 207 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTa--H~~~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~-g-~ 207 (332)
++.|.+.++|.|+++.... ...++.+.+. ++|++-+ ...+++++.+. | .
T Consensus 97 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~ 175 (342)
T 1jx6_A 97 LMEALKSKSDYLIFTLDTTRHRKFVEHVLDS-TNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKH 175 (342)
T ss_dssp HHHHHHTTCSEEEECCSSSTTHHHHHHHHHH-CSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHhcCCCEEEEeCChHhHHHHHHHHHHc-CCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCC
Confidence 4456678999999955432 2345555542 5565422 23456677775 4 5
Q ss_pred CCCcCCCCceEEEEechhh----hchhhHHHHHHhcCC-eE--EecCccchhhchHHHHH-HHhcC-ChHH----HHHHH
Q 020005 208 KPLEAGSPLRIGVLAKNAI----LTAGFYQEKLQHEGF-EV--VLPDKATMEHTLIPALD-ALNRK-DVEG----ARNLL 274 (332)
Q Consensus 208 k~~~~~~~~rVGlLaT~~T----~~s~lY~~~l~~~Gi-~v--v~P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l 274 (332)
+ ||++++.... .+..-|.+.++++|+ +. +.......+. -...++ .+..+ +++. .....
T Consensus 176 ~--------~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A 246 (342)
T 1jx6_A 176 T--------YYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQS-GYDAAKASLAKHPDVDFIYACSTDVA 246 (342)
T ss_dssp C--------EEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEEECCCSSHHH-HHHHHHHHHHHCCCCSEEEESSHHHH
T ss_pred c--------eEEEEEcCCcchhhHHHHHHHHHHHhCCCcEEEEEecCCCCHHH-HHHHHHHHHHhCCCccEEEECCChhH
Confidence 4 9999975432 122337788888875 33 2222211111 111122 23322 2211 12223
Q ss_pred HHHHHHHHhCCC-CEEEECCCCcc--cC--CCCCCCCCCceechHHHHHHHHHHHHHhh
Q 020005 275 RIALQVLLVRAV-NTVILASDDMQ--DL--LPPDDPLLKKCIDPMDALARSTIKWVKSA 328 (332)
Q Consensus 275 ~~~~~~L~~~ga-d~VILGCTElp--li--~~~~~~~~ipvID~~~~lA~a~v~~a~~~ 328 (332)
..+++.+.+.|. |..|.|+...+ +. ... .+ .+..|+....+++.+++.....
T Consensus 247 ~g~~~al~~~g~~di~vvg~D~~~~~~~~~~~g-~p-~lttv~~~~~~g~~a~~~l~~~ 303 (342)
T 1jx6_A 247 LGAVDALAELGREDIMINGWGGGSAELDAIQKG-DL-DITVMRMNDDTGIAMAEAIKWD 303 (342)
T ss_dssp HHHHHHHHHHTCTTSEEBCSBCCHHHHHHHHHT-SS-CEEEEECTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcC-Cc-eEEEecChHHhHHHHHHHHHHH
Confidence 334455555553 78899998877 22 211 11 2334543377888887776654
No 128
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=88.91 E-value=1 Score=42.27 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee-echH------HHHHHHHHhcCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii-~Ive------~t~~~l~~~g~k 208 (332)
..+.++.++++|||+|+++|-+.-..+.++.+.+++|++ +|++ .+.+++.+.|.+
T Consensus 177 ai~Ra~ay~eAGAD~i~~e~~~~~~~~~~i~~~~~~P~~~n~~~~g~tp~~~~~eL~~lGv~ 238 (305)
T 3ih1_A 177 AIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANMTEFGKTPYYSAEEFANMGFQ 238 (305)
T ss_dssp HHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHSCSCBEEECCTTSSSCCCCHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHcCCCEEEeecCCCCCCCCCHHHHHHcCCC
Confidence 344566789999999999998765667889999999987 6643 246788888874
No 129
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=88.25 E-value=5.8 Score=35.89 Aligned_cols=176 Identities=10% Similarity=0.070 Sum_probs=89.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhcc--C-C-CCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGE--E-N-DFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~--d-~-~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
.++||++=.. +-.||..+.+.... . . ...+++.+. ..+.+.. .
T Consensus 6 ~~~Igvi~~~----~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-------------------------~~~~~~~----~ 52 (325)
T 2x7x_A 6 HFRIGVAQCS----DDSWRHKMNDEILREAMFYNGVSVEIRSA-------------------------GDDNSKQ----A 52 (325)
T ss_dssp CCEEEEEESC----CSHHHHHHHHHHHHHHTTSSSCEEEEEEC-------------------------TTCHHHH----H
T ss_pred CeEEEEEecC----CCHHHHHHHHHHHHHHHHcCCcEEEEeCC-------------------------CCCHHHH----H
Confidence 5689998533 44577777665543 2 3 466665441 1122222 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec--------------------hHHHHHHHHHh--cCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV--------------------SECVAKELKEA--NMKPL 210 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I--------------------ve~t~~~l~~~--g~k~~ 210 (332)
+.++.|.+.++|.|++...... ..++.+.+ .++|++-+ ...+++++.+. |.+
T Consensus 53 ~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~-- 129 (325)
T 2x7x_A 53 EDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQ-KGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSLKGKG-- 129 (325)
T ss_dssp HHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHHHTTTEE--
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CCCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHHHcCCCc--
Confidence 2344566789998887654432 23444432 35665532 23455666664 554
Q ss_pred cCCCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHHH-HHhcC-ChHH----HHHHHHH
Q 020005 211 EAGSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPALD-ALNRK-DVEG----ARNLLRI 276 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~~ 276 (332)
||++++.... .+..-|.+.++++ |+++.. ......+. -...+. .+.++ +.+. .......
T Consensus 130 ------~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~aI~~~nd~~A~g 202 (325)
T 2x7x_A 130 ------NIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDKADAAWERGP-AEIEMDSMLRRHPKIDAVYAHNDRIAPG 202 (325)
T ss_dssp ------EEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHH-HHHHHHHHHHHCSCCCEEEESSTTHHHH
T ss_pred ------eEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHH-HHHHHHHHHHhCCCCCEEEECCCchHHH
Confidence 9999975421 1233477888888 887532 21111110 111122 22222 1111 1112233
Q ss_pred HHHHHHhCCC--CEEEECCCCccc
Q 020005 277 ALQVLLVRAV--NTVILASDDMQD 298 (332)
Q Consensus 277 ~~~~L~~~ga--d~VILGCTElpl 298 (332)
+++.+.+.|. |..|+|+...+.
T Consensus 203 ~~~al~~~Gip~dv~vig~D~~~~ 226 (325)
T 2x7x_A 203 AYQAAKMAGREKEMIFVGIDALPG 226 (325)
T ss_dssp HHHHHHHTTCTTSSEEEEEECCCS
T ss_pred HHHHHHHcCCCCCeEEEEECCCcc
Confidence 4455556664 778888887764
No 130
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=87.68 E-value=6.9 Score=35.73 Aligned_cols=131 Identities=12% Similarity=0.012 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhcCC-eE--EecCccchhhchHHHH-HHHhcC-
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEGF-EV--VLPDKATMEHTLIPAL-DALNRK- 265 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~Gi-~v--v~P~~~~q~~~l~~~i-~~ik~g- 265 (332)
..+++++.+.+.+ .+.+..++|++++.... .+..-|.+.++++|. +. +.......+. -...+ +.+.++
T Consensus 127 ~~a~~~L~~~g~~-~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~ 204 (350)
T 3h75_A 127 YRMLKELLHKLGP-VPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRER-AYRQAQQLLKRYP 204 (350)
T ss_dssp HHHHHHHHHHHCC-CCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhh-hcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCcHHH-HHHHHHHHHHhCC
Confidence 4466677776511 00011248999964321 123347888888885 22 2222222221 11112 223332
Q ss_pred ChHH----HHHHHHHHHHHHHhCCC----CEEEECCCCcccCCCCC-CC-CCCceechHHHHHHHHHHHHHhhc
Q 020005 266 DVEG----ARNLLRIALQVLLVRAV----NTVILASDDMQDLLPPD-DP-LLKKCIDPMDALARSTIKWVKSAE 329 (332)
Q Consensus 266 ~~~~----a~~~l~~~~~~L~~~ga----d~VILGCTElpli~~~~-~~-~~ipvID~~~~lA~a~v~~a~~~~ 329 (332)
+++. .......+++.+.+.|. |..|.|+...+..+... .+ ...-..| ...+++.+++.+...-
T Consensus 205 ~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~l~~~~~~~lttv~~~-~~~~G~~av~~l~~~l 277 (350)
T 3h75_A 205 KTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALIDGKLSVLEAG-HFTLGGWALVALHDDA 277 (350)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHHHHHHHHHTSSCEEEEC-GGGHHHHHHHHHHHHH
T ss_pred CcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCCeeEEEcC-chhhHHHHHHHHHHHH
Confidence 2111 12333455566666663 68888888877542111 11 1111223 4556666666665543
No 131
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=87.66 E-value=2.1 Score=40.26 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred ceEEEEechhhh---chhhHHHHHHhcCCeEEecC---ccchhhchHHHHHHHhcCChH-----H-HHHHHHHHHHHHHh
Q 020005 216 LRIGVLAKNAIL---TAGFYQEKLQHEGFEVVLPD---KATMEHTLIPALDALNRKDVE-----G-ARNLLRIALQVLLV 283 (332)
Q Consensus 216 ~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~P~---~~~q~~~l~~~i~~ik~g~~~-----~-a~~~l~~~~~~L~~ 283 (332)
+||++|..+... ....+++.+++.|++++.-. .... .+...+..+++...+ . ..+....+++.+.+
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~--d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVS--DWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCS--CCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCc--cHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHH
Confidence 499999976532 23456777888898886311 1111 133334455432211 0 01223444555666
Q ss_pred CCCCEEEECCC
Q 020005 284 RAVNTVILASD 294 (332)
Q Consensus 284 ~gad~VILGCT 294 (332)
.|.+..+++..
T Consensus 243 ~g~~~~~~~~~ 253 (419)
T 3h5l_A 243 DPTNSLVYLQY 253 (419)
T ss_dssp SCCSCEEEECS
T ss_pred cCCCceEEecC
Confidence 66666666543
No 132
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=87.59 E-value=15 Score=32.82 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec-------------------------hHHHHHHHHHh-cCCCCc
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------------SECVAKELKEA-NMKPLE 211 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I-------------------------ve~t~~~l~~~-g~k~~~ 211 (332)
+.|.+.++++|+.+..+.... .-.+.+..++|+|.. ...+++.+.+. |.+
T Consensus 63 ~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--- 139 (346)
T 1usg_A 63 NKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQ--- 139 (346)
T ss_dssp HHHHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCS---
T ss_pred HHHHhCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCC---
Confidence 445557888887665443211 122223335555543 13455666553 554
Q ss_pred CCCCceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
||++++.+... ...-|++.+++.|++++
T Consensus 140 -----~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (346)
T 1usg_A 140 -----RIAIIHDKQQYGEGLARSVQDGLKAANANVV 170 (346)
T ss_dssp -----SEEEEECSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred -----eEEEEECCCchHHHHHHHHHHHHHHcCCEEE
Confidence 99999865322 23457788888998765
No 133
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=87.37 E-value=0.88 Score=41.54 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF 191 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPi 191 (332)
+.+.++.++++|||+|+++|-..-....++.+.+++|+
T Consensus 170 ai~ra~a~~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~ 207 (255)
T 2qiw_A 170 AIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAVSVPV 207 (255)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTCSSCB
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHhCCCCE
Confidence 44556789999999999999754356788888888886
No 134
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=87.08 E-value=1.4 Score=41.27 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=62.1
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC--CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d--~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
.|+.|-+||-.-..+.++.+||.....+. ...+++|.-..+ -+. ..+.++.+ +-
T Consensus 128 ~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTD-----------a~~---------~~gldeAi----~R 183 (307)
T 3lye_A 128 TKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTD-----------ALQ---------SLGYEECI----ER 183 (307)
T ss_dssp CC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC-----------CHH---------HHCHHHHH----HH
T ss_pred CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEech-----------hhh---------ccCHHHHH----HH
Confidence 57788888766777888999998776643 346676644111 110 00122222 33
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCC-CCee-echH------HHHHHHHHhcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCS-VPFL-HVSE------CVAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~-iPii-~Ive------~t~~~l~~~g~k 208 (332)
++...++|||+|.++|-+.-.-+.++.+.++ +|++ ++++ .+.+++.+.|.+
T Consensus 184 a~ay~eAGAD~ifi~~~~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~~lGv~ 242 (307)
T 3lye_A 184 LRAARDEGADVGLLEGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFR 242 (307)
T ss_dssp HHHHHHTTCSEEEECCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCS
T ss_pred HHHHHHCCCCEEEecCCCCHHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHHHcCCe
Confidence 4557789999999999875455677777764 8874 6654 256788999874
No 135
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=86.22 E-value=3.4 Score=36.85 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=54.6
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH---HHHHHHHhcCCCCcCCCCceEEEEechhhhch-hhHHHHH
Q 020005 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC---VAKELKEANMKPLEAGSPLRIGVLAKNAILTA-GFYQEKL 236 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~---t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s-~lY~~~l 236 (332)
++..|+|+|+=--.| .+.|++.+++||+.|--. ..+.+++..- .++|||+++-..++.. ..+.+.|
T Consensus 59 ~~~~~~dVIISRGgt----a~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~------~~~kIavVg~~~~~~~~~~i~~ll 128 (225)
T 2pju_A 59 LANERCDAIIAAGSN----GAYLKSRLSVPVILIKPSGYDVLQFLAKAGK------LTSSIGVVTYQETIPALVAFQKTF 128 (225)
T ss_dssp TTTSCCSEEEEEHHH----HHHHHTTCSSCEEEECCCHHHHHHHHHHTTC------TTSCEEEEEESSCCHHHHHHHHHH
T ss_pred HhcCCCeEEEeCChH----HHHHHhhCCCCEEEecCCHHHHHHHHHHHHh------hCCcEEEEeCchhhhHHHHHHHHh
Confidence 344579977655444 456788899999988322 2233333321 1248999998776542 3334433
Q ss_pred HhcCCeEEe--cCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEEC
Q 020005 237 QHEGFEVVL--PDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVILA 292 (332)
Q Consensus 237 ~~~Gi~vv~--P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VILG 292 (332)
|+++.. ... .+.+...++.+.++|+++||=|
T Consensus 129 ---~~~i~~~~~~~----------------------~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 129 ---NLRLDQRSYIT----------------------EEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp ---TCCEEEEEESS----------------------HHHHHHHHHHHHHTTCCEEEES
T ss_pred ---CCceEEEEeCC----------------------HHHHHHHHHHHHHCCCCEEECC
Confidence 544322 111 1122345567888999875543
No 136
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=85.61 E-value=13 Score=34.80 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeee------------------chHHHHHHHHHhcCCCCcCCCCceEE
Q 020005 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH------------------VSECVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~------------------Ive~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
.+|.+.|+.+|+=|.++.... ...+.+..++|+|. ...+.++.++..+.+ +|+
T Consensus 63 ~~li~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~~~~~~~~~~~~~p~~~~a~~~~~~~~gw~--------~va 134 (389)
T 3o21_A 63 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLSYYKWE--------KFV 134 (389)
T ss_dssp HHHHTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCCCSSCCSSEEECSCCSHHHHHHHHHHHTCC--------EEE
T ss_pred HHHHhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCCCCccCCceEEEEccCHHHHHHHHHHhCCCC--------EEE
Confidence 345556999888887765543 56677777888882 245666667666776 999
Q ss_pred EEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 220 VLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 220 lLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
++. +...- ...+.+.+++.|++++.
T Consensus 135 ii~-d~~~g~~~~~~~~~~~~~~g~~v~~ 162 (389)
T 3o21_A 135 YLY-DTERGFSVLQAIMEAAVQNNWQVTA 162 (389)
T ss_dssp EEE-CSTTCSHHHHHHHHHHHHTTCEEEE
T ss_pred EEE-cCcHHHHHHHHHHHHhhcCCCeEEE
Confidence 998 43322 22345667788988763
No 137
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=84.92 E-value=1.1 Score=41.76 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=58.2
Q ss_pred cCeEEEEe--CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVG--GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiG--GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
.|+.|-+| |-.-....++.++|.....+....+++|.-.. .... .....++ +.+.
T Consensus 115 ~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRt----------da~~---------a~~g~~~----ai~R 171 (290)
T 2hjp_A 115 PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV----------EALI---------AGLGQQE----AVRR 171 (290)
T ss_dssp SCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE----------CTTT---------TTCCHHH----HHHH
T ss_pred CccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee----------hHhh---------ccccHHH----HHHH
Confidence 45666666 33344455677777776665422444443200 0000 0111222 3445
Q ss_pred HHHHHHcCCcEEEEeC-CCchhhHHHHhhhCC--CCee-ech---HHHHHHHHHhc-C
Q 020005 158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCS--VPFL-HVS---ECVAKELKEAN-M 207 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~C-NTaH~~~d~l~~~~~--iPii-~Iv---e~t~~~l~~~g-~ 207 (332)
++.++++|||+|++.| -..-..+.++.+.++ +|++ ++. ..+.+++.+.| .
T Consensus 172 a~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v 229 (290)
T 2hjp_A 172 GQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKV 229 (290)
T ss_dssp HHHHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTE
T ss_pred HHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCe
Confidence 6778999999999999 654455688888888 9977 332 23456777766 5
No 138
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=83.75 E-value=23 Score=31.49 Aligned_cols=119 Identities=8% Similarity=-0.046 Sum_probs=63.8
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (332)
.++||++=-- .+-.||..+.+..... ....+++.+. ..+.+... +
T Consensus 3 ~~~Igvi~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-------------------------~~~~~~~~----~ 50 (330)
T 3uug_A 3 KGSVGIAMPT---KSSARWIDDGNNIVKQLQEAGYKTDLQYA-------------------------DDDIPNQL----S 50 (330)
T ss_dssp CCEEEEEECC---SSSTHHHHHHHHHHHHHHHTTCEEEEEEC-------------------------TTCHHHHH----H
T ss_pred CcEEEEEeCC---CcchHHHHHHHHHHHHHHHcCCEEEEeeC-------------------------CCCHHHHH----H
Confidence 5789988522 2234777776655532 4566665541 11222222 2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh---HHHHhhhCCCCeeec---------------------hHHHHHHHHH-------h
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSVPFLHV---------------------SECVAKELKE-------A 205 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~~iPii~I---------------------ve~t~~~l~~-------~ 205 (332)
.++.+.+.++|.|++........ ++.+.+ .++|++-+ ...+++++.+ .
T Consensus 51 ~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~giPvV~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~ 129 (330)
T 3uug_A 51 QIENMVTKGVKVLVIASIDGTTLSDVLKQAGE-QGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGK 129 (330)
T ss_dssp HHHHHHHHTCSEEEECCSSGGGGHHHHHHHHH-TTCEEEEESSCCCSCTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTC
T ss_pred HHHHHHHcCCCEEEEEcCCchhHHHHHHHHHH-CCCCEEEECCCCCCCCceeEEEEeCHHHHHHHHHHHHHHHhcccCCC
Confidence 34456678899888766543333 444433 35555432 3345566666 3
Q ss_pred cCCCCcCCCCceEEEEechhh-----hchhhHHHHHHhc
Q 020005 206 NMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHE 239 (332)
Q Consensus 206 g~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~ 239 (332)
|++ +|++++.... .+..=|.+.++++
T Consensus 130 G~~--------~i~~i~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 130 GPF--------NIELFGGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp CCE--------EEEECBCCTTCHHHHHHHHHHHHHHHHH
T ss_pred Cce--------EEEEEECCCCCchHHHHHHHHHHHHHhc
Confidence 443 8999964322 1223367778776
No 139
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=83.66 E-value=6.7 Score=36.33 Aligned_cols=78 Identities=6% Similarity=-0.050 Sum_probs=43.9
Q ss_pred HHHHHHHcCCcEEEEe-----CCC-chhhHHHHhhhCCCCeeec--------------------------hHHHHHHHHH
Q 020005 157 KRVFLEKAGARCIVMP-----CHL-SHIWHDEVCKGCSVPFLHV--------------------------SECVAKELKE 204 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~-----CNT-aH~~~d~l~~~~~iPii~I--------------------------ve~t~~~l~~ 204 (332)
.+++|.+.|+++|+-| .+| .-.....+.+..++|+|+. ..+.++.++.
T Consensus 57 ~~~~Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~ 136 (384)
T 3qek_A 57 VCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRL 136 (384)
T ss_dssp HHHHTGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHH
Confidence 3455556699988884 222 2223456666778887752 3345556666
Q ss_pred hcCCCCcCCCCceEEEEechhhhch---hhHHHHHHhcCCe
Q 020005 205 ANMKPLEAGSPLRIGVLAKNAILTA---GFYQEKLQHEGFE 242 (332)
Q Consensus 205 ~g~k~~~~~~~~rVGlLaT~~T~~s---~lY~~~l~~~Gi~ 242 (332)
.+.+ +|+++..+...-. ..+++.+++.|.+
T Consensus 137 ~gw~--------~v~ii~~d~~~G~~~~~~~~~~~~~~g~~ 169 (384)
T 3qek_A 137 FNWN--------HVILIVSDDHEGRAAQKKLETLLEGKESK 169 (384)
T ss_dssp TTCC--------EEEEEEESSHHHHHHHHHHHHHHC-----
T ss_pred cCCe--------EEEEEEEcCcccHHHHHHHHHHHHhccCc
Confidence 5655 9999997554322 3466777777864
No 140
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=82.87 E-value=1.3 Score=40.82 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF 191 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPi 191 (332)
+.+.++.++++|||+|++.|-..-..+.++.+.+++|+
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~ 207 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLALQSQDIRALADALRVPL 207 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhcCCCE
Confidence 44556789999999999999754456788888888886
No 141
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=82.56 E-value=7.9 Score=36.13 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH--------HHH--HHHHh-cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC--------VAK--ELKEA-NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~--------t~~--~l~~~-g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+.|+|+|+|=... |-.++++.+.+++||||..+- .+. .+++. |. -.+.+|+++|
T Consensus 81 l~DTarvLs~~~~D~iviR~~~-~~~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~g~-----l~glkva~vG 154 (304)
T 3r7f_A 81 LYDTIRTLESIGVDVCVIRHSE-DEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNT-----FKGLTVSIHG 154 (304)
T ss_dssp HHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEES
T ss_pred HHHHHHHHHHhcCCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCC-----CCCCEEEEEc
Confidence 5566778999999999999885 777899999999999998641 111 23332 21 1345899999
Q ss_pred ch---hhhchhhHHHHHHhcCCeEEe
Q 020005 223 KN---AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 223 T~---~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
-- .+.. -+-..+...|+++.+
T Consensus 155 D~~~~rva~--Sl~~~~~~~G~~v~~ 178 (304)
T 3r7f_A 155 DIKHSRVAR--SNAEVLTRLGARVLF 178 (304)
T ss_dssp CCTTCHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCCcchHH--HHHHHHHHcCCEEEE
Confidence 63 1333 334566777988765
No 142
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=82.55 E-value=7.8 Score=35.87 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=46.1
Q ss_pred cCCcEEEEeCC--CchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CN--TaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.++|+||+.-- -.|+.+.+.++ .++||++=+|...+.+.+ +. +.|||-||.| |-.+.+....|+..|
T Consensus 65 ~~~d~vV~Spgi~~~~p~~~~a~~-~gi~v~~~~e~~~~~~~~-~~--------~~IaVTGTnGKTTTt~ll~~iL~~~g 134 (326)
T 3eag_A 65 FKADVYVIGNVAKRGMDVVEAILN-LGLPYISGPQWLSENVLH-HH--------WVLGVAGTHGKTTTASMLAWVLEYAG 134 (326)
T ss_dssp CCCSEEEECTTCCTTCHHHHHHHH-TTCCEEEHHHHHHHHTGG-GS--------EEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCcCCCCHHHHHHHH-cCCcEEeHHHHHHHHHhc-CC--------CEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 46898887432 23566665554 489999988866654322 12 2699999988 444566777888877
Q ss_pred CeE
Q 020005 241 FEV 243 (332)
Q Consensus 241 i~v 243 (332)
.++
T Consensus 135 ~~~ 137 (326)
T 3eag_A 135 LAP 137 (326)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 143
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=81.93 E-value=21 Score=32.38 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=51.0
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
.|.+.|+.+|+=|.++.-.. ...+.+..+||+++. .++.++-++..+.+ +|++
T Consensus 64 ~l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~w~--------~vai 135 (389)
T 4gpa_A 64 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWN--------CFVF 135 (389)
T ss_dssp HHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSCCSSEEECSCCCHHHHHHHHHHTTCC--------EEEE
T ss_pred HHHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceeccccccccccCCccccCCHHHHHHHHHHHcCCc--------EEEE
Confidence 35568999988876654443 567777778887753 46666767777766 9999
Q ss_pred Eechhhhchh--hHHHHHHhcCCeEEe
Q 020005 221 LAKNAILTAG--FYQEKLQHEGFEVVL 245 (332)
Q Consensus 221 LaT~~T~~s~--lY~~~l~~~Gi~vv~ 245 (332)
+.....-..+ -+.+.+.+.|++++.
T Consensus 136 i~~~d~~~~~~~~~~~~~~~~g~~v~~ 162 (389)
T 4gpa_A 136 LYDTDRGYSILQAIMEKAGQNGWHVSA 162 (389)
T ss_dssp EECSTTCSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecchhhHHHHHHHHHHHhcCceEEE
Confidence 9765432222 233556667887754
No 144
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=81.88 E-value=4.1 Score=37.94 Aligned_cols=80 Identities=10% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
.+.+|.+.|+.+|+=|.++.... ...+.+..++|+|+. ..+.++.++..|.+ +
T Consensus 59 ~~~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~~~~~~~~~~~~~p~~~~a~~~~~~~~g~~--------~ 130 (384)
T 3saj_A 59 RFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQEALISIIDHYKWQ--------T 130 (384)
T ss_dssp HHHHHHHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCCCSSCCTTEEECSCCCHHHHHHHHHHTTCC--------E
T ss_pred HHHHHHhcCeEEEECCCCHHHHHHHHHHhccCCCCeEeccccCcCccCceEEecccHHHHHHHHHHHCCCc--------E
Confidence 34456667999888777664433 455666667887763 45566666666665 9
Q ss_pred EEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 218 IGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 218 VGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
|+++.- ...- ...+.+.+++.|++++.
T Consensus 131 v~ii~d-~~~g~~~~~~~~~~~~~~g~~v~~ 160 (384)
T 3saj_A 131 FVYIYD-ADRGLSVLQRVLDTAAEKNWQVTA 160 (384)
T ss_dssp EEEEEC-STTCSHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEe-CchhHHHHHHHHHHhhhcCceEEE
Confidence 999983 3322 23355667778988764
No 145
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=81.77 E-value=12 Score=38.33 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeee------------------chHHHHHHHHHhcCCCCcCCCCce
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH------------------VSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~------------------Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
.+..|.+.|+.+|+=|-++.... ...+.+..++|+|+ ..++.++.++..|.+ +
T Consensus 52 ~~~~l~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~~~~~~~~~~r~~p~~~~a~~~l~~~~gw~--------~ 123 (823)
T 3kg2_A 52 AFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD--------K 123 (823)
T ss_dssp HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSCCSSEEECSCCCHHHHHHHHHHTTCS--------E
T ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccCCCCCCceEEEeCCCHHHHHHHHHHHCCCC--------E
Confidence 34556677999888777665443 56677777888775 245566666666665 9
Q ss_pred EEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 218 IGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 218 VGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
|+++. +...- ...+.+.+++.|++++.
T Consensus 124 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~ 153 (823)
T 3kg2_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153 (823)
T ss_dssp EEEEE-CGGGCTHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEE-eCChhHHHHHHHHHHhhccCCceEE
Confidence 99998 43322 23356677888988753
No 146
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=81.18 E-value=7.8 Score=36.46 Aligned_cols=73 Identities=19% Similarity=0.108 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCCCcCCCCce
Q 020005 165 GARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 165 Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~~~~~~~~r 217 (332)
++.+|+=|.++.... ...+.+..++|+|+. ..+.++.+++.+.+ +
T Consensus 85 ~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~--------~ 156 (433)
T 4f11_A 85 NHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWK--------R 156 (433)
T ss_dssp CCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCC--------E
T ss_pred ceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCc--------E
Confidence 788777766554332 344445556777653 34566666666665 9
Q ss_pred EEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 218 IGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 218 VGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
|+++..+...- ...+++.+++.|++++.
T Consensus 157 v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~ 187 (433)
T 4f11_A 157 VGTLTQDVQRFSEVRNDLTGVLYGEDIEISD 187 (433)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSSSSSCEEEE
T ss_pred EEEEEecchhhHHHHHHHHHHHHHcCceEEE
Confidence 99998765422 23345566677988764
No 147
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=80.46 E-value=4.8 Score=37.27 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=50.3
Q ss_pred HHHH-HHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------------hHHHHHHHHHhcCCCCc
Q 020005 158 RVFL-EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~L-e~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------------ve~t~~~l~~~g~k~~~ 211 (332)
+++| .+.|+++|+=|..+.... .-.+.+..++|+|+. ....++.+++.+.+
T Consensus 64 a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~k--- 140 (371)
T 4f06_A 64 AQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVRTSFTMFQNTVPAAKVAKQKGAT--- 140 (371)
T ss_dssp HHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcccCCcceecccchhhhhhhhhhhhhhcCce---
Confidence 3444 456899888777664433 233444557777754 23345566666654
Q ss_pred CCCCceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 212 AGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
||+++..+...- ...+++.+++.|.+++.
T Consensus 141 -----~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~ 172 (371)
T 4f06_A 141 -----KVAIAVSDYGPGIDAETAFKKTFEAEGGKVVE 172 (371)
T ss_dssp -----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----EEEEEcCCcccchhHHHHHHHHHHhcCCceEE
Confidence 999999765432 34467888888988763
No 148
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=79.98 E-value=28 Score=30.48 Aligned_cols=166 Identities=11% Similarity=0.070 Sum_probs=82.8
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh---HHHHhhhCCCCeeech-------------------------HHHHHHHHHh-cC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSVPFLHVS-------------------------ECVAKELKEA-NM 207 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~~iPii~Iv-------------------------e~t~~~l~~~-g~ 207 (332)
.++.|.+.|+|.|++........ ++.+++ .++|++-+- ..+++++.+. |.
T Consensus 49 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~ 127 (306)
T 8abp_A 49 AIDSLAASGAKGFVICTPDPKLGSAIVAKARG-YDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQK 127 (306)
T ss_dssp HHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH-TTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH-CCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHh
Confidence 34557778999888776543322 344433 366665432 2344455533 33
Q ss_pred CCCcCCCCceEEEEe-c-h----hhhchhhHHHHHHhcCCe---EEe--cCccchhhchHHHHH-HHhcC-ChHH-----
Q 020005 208 KPLEAGSPLRIGVLA-K-N----AILTAGFYQEKLQHEGFE---VVL--PDKATMEHTLIPALD-ALNRK-DVEG----- 269 (332)
Q Consensus 208 k~~~~~~~~rVGlLa-T-~----~T~~s~lY~~~l~~~Gi~---vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----- 269 (332)
+. ...++||+++ . . ...+..=|.+.++++|+. ++. ......+. -...+. .+.++ +++.
T Consensus 128 ~~---~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~a~~i~~ 203 (306)
T 8abp_A 128 RG---WDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG-AFDAANSMLVQHPEVKHWLIVG 203 (306)
T ss_dssp HT---CCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHH-HHHHHHHHHTTCTTCSEEEEEC
T ss_pred cC---CCccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChHH-HHHHHHHHHHhCCCCceEEEEe
Confidence 20 0113899986 2 1 122333478888888753 332 22211211 111222 23332 2111
Q ss_pred -HHHHHHHHHHHHHhCCC---CEEEECCCCcccCCCCCCCC----CCcee-chHHHHHHHHHHHHHhh
Q 020005 270 -ARNLLRIALQVLLVRAV---NTVILASDDMQDLLPPDDPL----LKKCI-DPMDALARSTIKWVKSA 328 (332)
Q Consensus 270 -a~~~l~~~~~~L~~~ga---d~VILGCTElpli~~~~~~~----~ipvI-D~~~~lA~a~v~~a~~~ 328 (332)
.......+++.+.+.|. |..|.|+...+ ......+. ....| =+...+++.+++.....
T Consensus 204 ~nD~~A~g~~~al~~~g~~v~di~vvG~D~~~-~~~~~~~~~~~~~~ttv~~~~~~~G~~a~~~l~~~ 270 (306)
T 8abp_A 204 MNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 270 (306)
T ss_dssp SSHHHHHHHHHHHHHTTCCGGGEEEEEESSGG-GHHHHTSSSCCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCCCceEEEEeCcHH-HHHHHHcCCCcceEEEecCCHHHHHHHHHHHHHHH
Confidence 12334456667777776 89999999988 32211110 11223 35566777777766553
No 149
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=78.78 E-value=20 Score=33.63 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHhccC--CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 020005 90 SVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (332)
Q Consensus 90 Gp~AT~~~y~kI~~~t~~d--~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (332)
+.+--..|...+++.+.+. +..|+.+--.| .++. ....+.++ ..+.++.|+++|+|
T Consensus 197 slenR~r~~~eiv~aVR~avG~d~pV~vRls~-------------~~~~-----~~g~~~~~----~~~la~~L~~~Gvd 254 (349)
T 3hgj_A 197 SLENRMRFPLQVAQAVREVVPRELPLFVRVSA-------------TDWG-----EGGWSLED----TLAFARRLKELGVD 254 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTSCEEEEEES-------------CCCS-----TTSCCHHH----HHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCceEEEEecc-------------cccc-----CCCCCHHH----HHHHHHHHHHcCCC
Confidence 4556667778888777654 45666552111 1110 00112222 34567889999999
Q ss_pred EEEEeCCCc---------h----hhHHHHhhhCCCCeeech----HHHHHHHHHhc-CCCCcCCCCceEEEEechhhhch
Q 020005 168 CIVMPCHLS---------H----IWHDEVCKGCSVPFLHVS----ECVAKELKEAN-MKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 168 ~IvI~CNTa---------H----~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g-~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
+|-+.+... . .+..++++.+++||+... ...++++.+.| . -...+|+......
T Consensus 255 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~a---------D~V~iGR~~lanP 325 (349)
T 3hgj_A 255 LLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSA---------DLVLLGRVLLRDP 325 (349)
T ss_dssp EEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSC---------SEEEESTHHHHCT
T ss_pred EEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCc---------eEEEecHHHHhCc
Confidence 999985211 1 236778888899998764 23445555554 3 3555677666666
Q ss_pred hhHHHHHHhcCCeEEec
Q 020005 230 GFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 230 ~lY~~~l~~~Gi~vv~P 246 (332)
.+..+..+..|.++..|
T Consensus 326 dl~~k~~~~l~~~~~~~ 342 (349)
T 3hgj_A 326 YFPLRAAKALGVAPEVP 342 (349)
T ss_dssp THHHHHHHHTTCCCCCC
T ss_pred hHHHHHHHHCCCCCCCc
Confidence 67777666667655443
No 150
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=76.20 E-value=3.9 Score=38.03 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CchhhHHHHhhhCC--CCeeec-hH---HHHHHHHHhcCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCH-LSHIWHDEVCKGCS--VPFLHV-SE---CVAKELKEANMK 208 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CN-TaH~~~d~l~~~~~--iPii~I-ve---~t~~~l~~~g~k 208 (332)
+.+.++.++++|||+|++.|- ..-.-+.++.+.++ +|++-. .+ ...+++.+.|.+
T Consensus 172 ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~ 233 (295)
T 1s2w_A 172 ALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVS 233 (295)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCc
Confidence 344567799999999999883 33445677777776 887633 21 346677777763
No 151
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=76.09 E-value=5.6 Score=37.18 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=62.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC--CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d--~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
.|+.|-++|---....++.+||.....+. ...+++|.-..+ -+.. .+.++.++ -
T Consensus 120 ~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTD-----------a~~~---------~gldeAi~----R 175 (302)
T 3fa4_A 120 TKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTD-----------SLQT---------HGYEESVA----R 175 (302)
T ss_dssp C-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEEC-----------CHHH---------HCHHHHHH----H
T ss_pred CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEec-----------cccc---------CCHHHHHH----H
Confidence 57778877766677889999998877653 246666644211 1100 11222222 2
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhC-CCCe-eechHH------HHHHHHHhcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPF-LHVSEC------VAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~-~iPi-i~Ive~------t~~~l~~~g~k 208 (332)
++...++|||+|.+++-+.-.-+.++.+.+ ++|+ ++|++- +.+++.+.|.+
T Consensus 176 a~ay~eAGAD~ifi~g~~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL~~lGv~ 234 (302)
T 3fa4_A 176 LRAARDAGADVGFLEGITSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGFR 234 (302)
T ss_dssp HHHHHTTTCSEEEETTCCCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHHHHTCS
T ss_pred HHHHHHcCCCEEeecCCCCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHHHHcCCC
Confidence 345678999999999976555567777777 4787 566542 56788998873
No 152
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=76.04 E-value=19 Score=33.27 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=46.6
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec------------------------hHHHHHHHHHhcCCCCcCCC
Q 020005 160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV------------------------SECVAKELKEANMKPLEAGS 214 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I------------------------ve~t~~~l~~~g~k~~~~~~ 214 (332)
.|.+.|+++|+=|.++.... ...+.+..++|+|+. ..+.++.++..+.+
T Consensus 66 ~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~------ 139 (395)
T 3h6g_A 66 DQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWK------ 139 (395)
T ss_dssp HHHHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEEEEECHHHHHHHHHHHHHHTTCS------
T ss_pred HhhhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccCceEEEecCCHHHHHHHHHHHHHHCCCe------
Confidence 34456888888777665443 456666778887753 33455555555655
Q ss_pred CceEEEEechhhhc---hhhHHHHHHhcCCeEEe
Q 020005 215 PLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 215 ~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~ 245 (332)
+|+++.- ...- ...+.+.+++.|++++.
T Consensus 140 --~v~ii~d-~~~g~~~~~~~~~~~~~~g~~v~~ 170 (395)
T 3h6g_A 140 --TVTVVYD-DSTGLIRLQELIKAPSRYNLRLKI 170 (395)
T ss_dssp --EEEEEES-STHHHHHTHHHHTGGGTSSCEEEE
T ss_pred --EEEEEEE-ChhHHHHHHHHHHhhhcCCceEEE
Confidence 9999963 3221 12234455666888754
No 153
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=75.85 E-value=11 Score=33.29 Aligned_cols=79 Identities=16% Similarity=0.007 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeech----HHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS----ECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
.+.++.++++|+|.|.+..-+.. .++.++++.+++|++--. ...++.+.+.|.. -.++|
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad---------~V~ig 108 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGAD---------KVSIN 108 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCS---------EECCS
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCC---------eeehh
Confidence 34567889999999987654321 246788888999997652 1334555566653 44677
Q ss_pred chhhhchhhHHHHHHhcCCe
Q 020005 223 KNAILTAGFYQEKLQHEGFE 242 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi~ 242 (332)
|..--...+..+..+.+|-+
T Consensus 109 ~~~l~dp~~~~~~~~~~g~~ 128 (247)
T 3tdn_A 109 TAAVENPSLITQIAQTFGSQ 128 (247)
T ss_dssp HHHHHCTHHHHHHHHHHC--
T ss_pred hHHhhChHHHHHHHHHhCCC
Confidence 75554556666776666643
No 154
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=75.61 E-value=5.7 Score=33.91 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=48.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
++||+ ||..|-....++..+....- -..++-+.|--. .++.+.+ .++.
T Consensus 7 ~V~Ii--mgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR-------------------------tp~~l~~----~~~~ 55 (166)
T 3oow_A 7 QVGVI--MGSKSDWSTMKECCDILDNLGIGYECEVVSAHR-------------------------TPDKMFD----YAET 55 (166)
T ss_dssp EEEEE--ESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTT-------------------------CHHHHHH----HHHH
T ss_pred eEEEE--ECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcC-------------------------CHHHHHH----HHHH
Confidence 78998 88888888888877655432 112233333111 2223333 3345
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
+++.|+++|+....-+-..---+...+..|||++
T Consensus 56 ~~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 89 (166)
T 3oow_A 56 AKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGV 89 (166)
T ss_dssp TTTTTCCEEEEEECSSCCHHHHHHHTCSSCEEEE
T ss_pred HHhCCCcEEEEECCcchhhHHHHHhccCCCEEEe
Confidence 6778888655444443333356677788999986
No 155
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=74.66 E-value=22 Score=31.91 Aligned_cols=163 Identities=11% Similarity=0.053 Sum_probs=77.9
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec---------------------hHHHHHHHHH---hcCCCC
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV---------------------SECVAKELKE---ANMKPL 210 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I---------------------ve~t~~~l~~---~g~k~~ 210 (332)
++.|.+.|+|.|++...... ..++.+++ .++|+|.+ ....++++.+ .|.
T Consensus 53 i~~li~~~vdgiii~~~~~~~~~~~~~~a~~-~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~--- 128 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ-RGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEK--- 128 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSSTTHHHHHHHHH-TTCEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHHHHCSSS---
T ss_pred HHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CcCEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHHHcCCCC---
Confidence 45566789999887655433 33444433 34554422 2334455555 333
Q ss_pred cCCCCceEEEEechh-----hhchhhHHHHHHhc--CCeEEec--CccchhhchHHHHH-HHhcC-ChHH----HHHHHH
Q 020005 211 EAGSPLRIGVLAKNA-----ILTAGFYQEKLQHE--GFEVVLP--DKATMEHTLIPALD-ALNRK-DVEG----ARNLLR 275 (332)
Q Consensus 211 ~~~~~~rVGlLaT~~-----T~~s~lY~~~l~~~--Gi~vv~P--~~~~q~~~l~~~i~-~ik~g-~~~~----a~~~l~ 275 (332)
++|++++... ..+..-|.+.|+++ +++++.. .....+. -...++ .+.+. +++. ......
T Consensus 129 -----~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~aI~~~nD~~A~ 202 (316)
T 1tjy_A 129 -----AKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATK-SLQTAEGIIKAYPDLDAIIAPDANALP 202 (316)
T ss_dssp -----EEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCSSCCEEEECSTTHHH
T ss_pred -----CEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHH-HHHHHHHHHHhCCCCCEEEECCCccHH
Confidence 4999997432 12334477788765 5665431 1111111 111122 23322 2111 112223
Q ss_pred HHHHHHHhCC-CCEEEECCCCcccCCCCCC-C-CCCceechHHHHHHHHHHHHHhhcc
Q 020005 276 IALQVLLVRA-VNTVILASDDMQDLLPPDD-P-LLKKCIDPMDALARSTIKWVKSAEK 330 (332)
Q Consensus 276 ~~~~~L~~~g-ad~VILGCTElpli~~~~~-~-~~ipvID~~~~lA~a~v~~a~~~~~ 330 (332)
.+++.+.+.| -|..|.|....+....... + ..-.+.=+...+++.+++.+....+
T Consensus 203 g~~~al~~~G~~dv~VvG~D~~~~~~~~i~~g~l~ttv~~~~~~~g~~a~~~l~~~i~ 260 (316)
T 1tjy_A 203 AAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLK 260 (316)
T ss_dssp HHHHHHHHTTCCSCEEEEBCCHHHHHHHHHHTSCSEEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCEEEEEeCCCHHHHHHHHCCCccEEEecCHHHHHHHHHHHHHHHHc
Confidence 3445555556 4678888877653221111 1 1012233446777777777766543
No 156
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=74.23 E-value=21 Score=34.48 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=44.2
Q ss_pred CcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCCe
Q 020005 166 ARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGFE 242 (332)
Q Consensus 166 ad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi~ 242 (332)
+|+||++--- -|+.+.+.+ ..++|+++-++...+.. .. +.|||-||.| |-.+.+....|+..|..
T Consensus 73 ~d~vv~spgi~~~~p~~~~a~-~~gi~v~~~~e~~~~~~---~~--------~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPMVKKAL-EKQIPVLTEVELAYLVS---ES--------QLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp EEEEEECTTSCTTSHHHHHHH-HTTCCEECHHHHHHHHC---CS--------EEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEECCcCCCCChhHHHHH-HCCCcEEeHHHHHHHhc---CC--------CEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 7888775332 345555444 34899999887665421 11 2799999987 44556777888888875
Q ss_pred EE
Q 020005 243 VV 244 (332)
Q Consensus 243 vv 244 (332)
+.
T Consensus 141 ~~ 142 (451)
T 3lk7_A 141 GL 142 (451)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 157
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=73.52 E-value=46 Score=29.02 Aligned_cols=53 Identities=4% Similarity=-0.212 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCC--CEEEECCCCcccCCCCCC-CCCCc-eec-hHHHHHHHHHHHHHhh
Q 020005 275 RIALQVLLVRAV--NTVILASDDMQDLLPPDD-PLLKK-CID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 275 ~~~~~~L~~~ga--d~VILGCTElpli~~~~~-~~~ip-vID-~~~~lA~a~v~~a~~~ 328 (332)
..+++.+.+.|. |..|.|+...+....... +. +. .|+ +...+++.+++.....
T Consensus 202 ~g~~~al~~~g~~~dv~vig~d~~~~~~~~~~~~~-lt~tv~~~~~~~g~~a~~~l~~~ 259 (303)
T 3d02_A 202 IGAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGD-ITEGITYDPATAGYALAAVASTL 259 (303)
T ss_dssp HHHHHHHHHTTCTTTCEEEECCCHHHHHHHHHHTS-SCEEEECCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHH
Confidence 344556666676 788889887652221111 11 22 222 4455666666666554
No 158
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=73.31 E-value=20 Score=32.79 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhCCCCeee----chHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH----VSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~~iPii~----Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+.++..+++||++|=+.+-..+. .+.++++.+++||+- +-+..+.+++..|.. .|.|.++.-.
T Consensus 83 ~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD--------~VlLi~a~L~ 154 (272)
T 3tsm_A 83 ALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGAD--------CILIIMASVD 154 (272)
T ss_dssp HHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCS--------EEEEETTTSC
T ss_pred HHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCC--------EEEEcccccC
Confidence 45567889999999876654332 467888889999941 223356677888875 6777766332
Q ss_pred h-chhhHHHHHHhcCCeEEe
Q 020005 227 L-TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~-~s~lY~~~l~~~Gi~vv~ 245 (332)
- +-.-+-+...+.|+++++
T Consensus 155 ~~~l~~l~~~a~~lGl~~lv 174 (272)
T 3tsm_A 155 DDLAKELEDTAFALGMDALI 174 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 1 111233334566988764
No 159
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=72.85 E-value=21 Score=31.33 Aligned_cols=161 Identities=9% Similarity=0.071 Sum_probs=80.5
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhhhCCCCeeec---------------------------hHHHHHHHHHh-c
Q 020005 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV---------------------------SECVAKELKEA-N 206 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH---~~~d~l~~~~~iPii~I---------------------------ve~t~~~l~~~-g 206 (332)
++.+...++|.|++...... ..++.+.+ .++|++-+ ...+++++.+. |
T Consensus 52 ~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G 130 (288)
T 1gud_A 52 FEDLSNKNYKGIAFAPLSSVNLVMPVARAWK-KGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLG 130 (288)
T ss_dssp HHHHHTSSEEEEEECCSSSSTTHHHHHHHHH-TTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhC
Confidence 34566778888877543322 23444443 35665532 23456677776 6
Q ss_pred --CCCCcCCCCceEEEEechhh-----hchhhHHHHHHhc-CCeEEe--cCccchhhchHHHHH-HHhcC-ChHH----H
Q 020005 207 --MKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHE-GFEVVL--PDKATMEHTLIPALD-ALNRK-DVEG----A 270 (332)
Q Consensus 207 --~k~~~~~~~~rVGlLaT~~T-----~~s~lY~~~l~~~-Gi~vv~--P~~~~q~~~l~~~i~-~ik~g-~~~~----a 270 (332)
.+ ||++++.+.. .+..=|++.++++ |++++. ......+. -...++ .++.+ +++. .
T Consensus 131 ~~~~--------~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~n 201 (288)
T 1gud_A 131 AEGG--------EVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIK-ALDVATNVLQRNPNIKAIYCAN 201 (288)
T ss_dssp GGCE--------EEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCTTCCEEEESS
T ss_pred CCCC--------EEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEeecCCccHHH-HHHHHHHHHHhCCCceEEEECC
Confidence 54 9999985321 1223378889888 886532 22211111 111122 23322 1111 1
Q ss_pred HHHHHHHHHHHHhCCC--CEEEECCCCcccCCCC-CCCCCCceec-hHHHHHHHHHHHHHhh
Q 020005 271 RNLLRIALQVLLVRAV--NTVILASDDMQDLLPP-DDPLLKKCID-PMDALARSTIKWVKSA 328 (332)
Q Consensus 271 ~~~l~~~~~~L~~~ga--d~VILGCTElpli~~~-~~~~~ipvID-~~~~lA~a~v~~a~~~ 328 (332)
......+++.+.+.|. |.-|.|....+..... ..+.....|+ +...+++.+++.....
T Consensus 202 D~~A~g~~~al~~~G~~~dv~vvGfD~~~~~~~~~~~p~~lttv~q~~~~~g~~a~~~l~~~ 263 (288)
T 1gud_A 202 DTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDA 263 (288)
T ss_dssp HHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHHTSSCEEEECCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCccEEEEEcCHHHHHHHHHHHHHHH
Confidence 2223345556666654 6788898888753211 0111112333 4556666666665543
No 160
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=72.16 E-value=19 Score=33.72 Aligned_cols=82 Identities=9% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCC------------chhhHHHHhhhCCCCeeech----HHHHHHHHHhc-CCCCcCCCCce
Q 020005 155 RRKRVFLEKAGARCIVMPCHL------------SHIWHDEVCKGCSVPFLHVS----ECVAKELKEAN-MKPLEAGSPLR 217 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT------------aH~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g-~k~~~~~~~~r 217 (332)
.+.++.|+++|+|+|-+..-. ...+..++++.+++||+... .+.++++.+.| . -
T Consensus 232 ~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~a---------D 302 (340)
T 3gr7_A 232 VPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRA---------D 302 (340)
T ss_dssp HHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSC---------S
T ss_pred HHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCe---------e
Confidence 455678999999999987421 01246788889999998753 23445555554 3 3
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
...+|+.......+..+..+..|.++..
T Consensus 303 ~V~iGR~~lanPdl~~ki~~~l~~~~~~ 330 (340)
T 3gr7_A 303 LVFLGRELLRNPYWPYAAARELGAKISA 330 (340)
T ss_dssp EEEECHHHHHCTTHHHHHHHHTTCCCCC
T ss_pred EEEecHHHHhCchHHHHHHHHCCCCCCC
Confidence 5677887777777777777777766543
No 161
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=71.19 E-value=12 Score=32.11 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=48.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++||| ||..|-....++..+....- -...+-+.|--..| +.+ .+.++
T Consensus 7 ~~V~Ii--mgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p-------------------------~~~----~~~~~ 55 (169)
T 3trh_A 7 IFVAIL--MGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTP-------------------------KET----VEFVE 55 (169)
T ss_dssp CEEEEE--ESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSH-------------------------HHH----HHHHH
T ss_pred CcEEEE--ECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCH-------------------------HHH----HHHHH
Confidence 368888 77777777888877655432 12334444422222 222 33345
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
..++.|+++|+....-+-..---+...+..|||++
T Consensus 56 ~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 90 (169)
T 3trh_A 56 NADNRGCAVFIAAAGLAAHLAGTIAAHTLKPVIGV 90 (169)
T ss_dssp HHHHTTEEEEEEEECSSCCHHHHHHHTCSSCEEEE
T ss_pred HHHhCCCcEEEEECChhhhhHHHHHhcCCCCEEEe
Confidence 56778998544444333333356667788999886
No 162
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=69.92 E-value=8.7 Score=33.24 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=48.9
Q ss_pred chhhhccCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
+..|+ ..++||| ||..+-....++..+....- -...+-+.|--+.|+ .+
T Consensus 16 ~~~~~-~~~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~-------------------------~l-- 65 (182)
T 1u11_A 16 DKAAS-APVVGII--MGSQSDWETMRHADALLTELEIPHETLIVSAHRTPD-------------------------RL-- 65 (182)
T ss_dssp ----C-CCSEEEE--ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHH-------------------------HH--
T ss_pred hhhcC-CCEEEEE--ECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHH-------------------------HH--
Confidence 34443 4578888 88888888888887666432 123444444222222 22
Q ss_pred HHHHHHHHHHHcCCcEEEEeC-CCchhhHHHHhhhCCCCeeech
Q 020005 153 NLRRKRVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~C-NTaH~~~d~l~~~~~iPii~Iv 195 (332)
.+.++..++.|+++|+... -.+|- ---+...+..|||++.
T Consensus 66 --~~~~~~a~~~g~~ViIa~AG~aa~L-pgvvA~~t~~PVIgVP 106 (182)
T 1u11_A 66 --ADYARTAAERGLNVIIAGAGGAAHL-PGMCAAWTRLPVLGVP 106 (182)
T ss_dssp --HHHHHHTTTTTCCEEEEEEESSCCH-HHHHHHHCSSCEEEEE
T ss_pred --HHHHHHHHhCCCcEEEEecCchhhh-HHHHHhccCCCEEEee
Confidence 2333456677888543333 33333 3556667888998873
No 163
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=69.56 E-value=9.4 Score=32.82 Aligned_cols=82 Identities=15% Similarity=0.029 Sum_probs=47.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
++||| ||..|-....++..+....- -..++-+.|--+.|+ .+ .+.++.
T Consensus 14 ~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~-------------------------~~----~~~~~~ 62 (174)
T 3kuu_A 14 KIAIV--MGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPD-------------------------RL----FSFAEQ 62 (174)
T ss_dssp CEEEE--ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHH-------------------------HH----HHHHHH
T ss_pred cEEEE--ECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHH-------------------------HH----HHHHHH
Confidence 68998 88888888888877655432 123344444222222 22 233345
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.++.|+++|+....-+-..---+...+..|||++
T Consensus 63 a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 96 (174)
T 3kuu_A 63 AEANGLHVIIAGNGGAAHLPGMLAAKTLVPVLGV 96 (174)
T ss_dssp TTTTTCSEEEEEEESSCCHHHHHHHTCSSCEEEE
T ss_pred HHhCCCcEEEEECChhhhhHHHHHhccCCCEEEe
Confidence 6678898544443333333356667788999886
No 164
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=69.26 E-value=23 Score=31.29 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeee
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~ 193 (332)
+.+.++..+++|+.+|-+ ++ -..+.++++.+++|++.
T Consensus 38 ~~~~A~a~~~~Ga~~i~~--~~-~~~i~~ir~~v~~Pvig 74 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRI--EG-IENLRTVRPHLSVPIIG 74 (229)
T ss_dssp HHHHHHHHHHTTCSEEEE--ES-HHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHHHCCCcEEEE--CC-HHHHHHHHHhcCCCEEE
Confidence 445667889999999876 33 33478999999999874
No 165
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=69.20 E-value=15 Score=31.61 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=48.7
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
..++||| ||..|-....++..+....- -..++-+.|--..| +.+ .+.+
T Consensus 7 ~~~V~Ii--mgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p-------------------------~~~----~~~~ 55 (174)
T 3lp6_A 7 RPRVGVI--MGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTP-------------------------EAM----FSYA 55 (174)
T ss_dssp CCSEEEE--ESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCH-------------------------HHH----HHHH
T ss_pred CCeEEEE--ECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCH-------------------------HHH----HHHH
Confidence 3468888 77777777888877655432 12334444422222 223 3334
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
+..++.|+++|+....-+-..---+...+..|||++
T Consensus 56 ~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 91 (174)
T 3lp6_A 56 RGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGV 91 (174)
T ss_dssp HHHHHHTCCEEEEEEESSCCHHHHHHHHCSSCEEEE
T ss_pred HHHHhCCCCEEEEecCchhhhHHHHHhccCCCEEEe
Confidence 556788998544443333333356667788999886
No 166
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=69.15 E-value=23 Score=32.68 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=44.3
Q ss_pred HHHHHcCCcEEEEeCCC-chh-hHHHHhhhCCCCeeec-------------------------hHHHHHHHHHhcCCCCc
Q 020005 159 VFLEKAGARCIVMPCHL-SHI-WHDEVCKGCSVPFLHV-------------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNT-aH~-~~d~l~~~~~iPii~I-------------------------ve~t~~~l~~~g~k~~~ 211 (332)
..|.+.|+.+|+=|.++ ... ....+.+..++|+|+. .++.++.++..+.+
T Consensus 64 ~~l~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~--- 140 (393)
T 3om0_A 64 CQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYP--- 140 (393)
T ss_dssp HHHGGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHHHHHhCCCc---
Confidence 44556788888887777 332 3455555556665532 33455556555655
Q ss_pred CCCCceEEEEechhhhchhhHHHH---HHhcCCeEE
Q 020005 212 AGSPLRIGVLAKNAILTAGFYQEK---LQHEGFEVV 244 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~~s~lY~~~---l~~~Gi~vv 244 (332)
+|+++..+...-.+ .++. +.+.|.++.
T Consensus 141 -----~vaii~~~~~~g~~-l~~~~~~~~~~g~~v~ 170 (393)
T 3om0_A 141 -----SASLICAKAECLLR-LEELVRGFLISKETLS 170 (393)
T ss_dssp -----CEEEEESSTTHHHH-THHHHHHHHHSSSCEE
T ss_pred -----EEEEEEeCchHHHH-HHHHHHhhhccCCeEE
Confidence 99999976543322 2333 344576653
No 167
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=68.67 E-value=80 Score=30.21 Aligned_cols=81 Identities=10% Similarity=-0.028 Sum_probs=48.4
Q ss_pred eCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcch--------hhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 87 GGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLN--------KELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 87 GGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip--------~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
||.-|.....+|+.|++.+.+- .|-+..+.|.-.-| +..++.+ .|.-.... -..+|.+.. .
T Consensus 88 ~~l~~~~i~~ifr~Ii~~s~~~Q~~~hsk~~l~sr~~~~~~t~i~i~~~~iG~~-~~~~Iigp---csves~e~a----~ 159 (385)
T 3nvt_A 88 GPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTIVTVKGLPIGNG-EPVFVFGP---CSVESYEQV----A 159 (385)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTSTTCCTTSCTTBTTTCCSCCCEEETTEEETSS-SCEEEEEC---SBCCCHHHH----H
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcccccchhhhccccCCCCcEEEECCEEECCC-CeEEEEEe---CCcCCHHHH----H
Confidence 8999999999999999988742 45555555521111 1122222 23211111 123355444 3
Q ss_pred HHHHHHHHcCCcEEEEeCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNT 175 (332)
+.++.+.++|||+|.+-...
T Consensus 160 ~~a~~~k~aGa~~vk~q~fk 179 (385)
T 3nvt_A 160 AVAESIKAKGLKLIRGGAFK 179 (385)
T ss_dssp HHHHHHHHTTCCEEECBSSC
T ss_pred HHHHHHHHcCCCeEEccccc
Confidence 45567889999999998765
No 168
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=68.10 E-value=8.1 Score=36.28 Aligned_cols=153 Identities=17% Similarity=0.230 Sum_probs=83.8
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEech--hhhchhhHH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAKN--AILTAGFYQ 233 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~--~T~~s~lY~ 233 (332)
++.|+.+|+|-++.- -.|. ++++..+++|+-|+ ....++++++.+.+ ...|++.. +......+.
T Consensus 118 A~ll~~~G~d~vit~--DlH~--~qiqgfF~ipvd~l~a~p~l~~~i~~~~~~--------~~vVVspd~Ggv~~A~~lA 185 (319)
T 3dah_A 118 ANMLEIAGVERIITM--DLHA--DQIQGFFDIPVDNIYATPILLGDLRKQNYP--------DLLVVSPDVGGVVRARALA 185 (319)
T ss_dssp HHHHHHHTCCEEEEE--SCSC--GGGGGGCSSCEEEECCHHHHHHHHHTTCCT--------TEEEECCSSTTHHHHHHHH
T ss_pred HHHHHhcCCCEEEEE--ECCC--hHHhhhcCCceEecccHHHHHHHHHHhCCC--------CcEEEEeCCCccHHHHHHH
Confidence 577889999976642 2455 68888899999666 56667777765433 45566642 233333333
Q ss_pred HHHHhcCCeEEecCccchh-h--chHHHHHHHhcCCh---HH---HHHHHHHHHHHHHhCCCCEEEECCCCc--cc----
Q 020005 234 EKLQHEGFEVVLPDKATME-H--TLIPALDALNRKDV---EG---ARNLLRIALQVLLVRAVNTVILASDDM--QD---- 298 (332)
Q Consensus 234 ~~l~~~Gi~vv~P~~~~q~-~--~l~~~i~~ik~g~~---~~---a~~~l~~~~~~L~~~gad~VILGCTEl--pl---- 298 (332)
+.| |+.+..-...... . ..+.....++.... ++ .-..+.++++.|++.|+..|...|||= +.
T Consensus 186 ~~L---~~p~~~i~K~r~~~~~v~~~~i~g~v~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~ 262 (319)
T 3dah_A 186 KQL---NCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAAD 262 (319)
T ss_dssp HHT---TCEEEC--------------------CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTTHHH
T ss_pred HHh---CCCEEEEEEEeccCCceEEEEccccCCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEeecCChHHHH
Confidence 333 5554432221100 0 01111223332111 21 345688888899999999999999982 21
Q ss_pred -CCC-CCC--------C--------CCCceechHHHHHHHHHHHH
Q 020005 299 -LLP-PDD--------P--------LLKKCIDPMDALARSTIKWV 325 (332)
Q Consensus 299 -i~~-~~~--------~--------~~ipvID~~~~lA~a~v~~a 325 (332)
+.+ ..+ + ..+.++|-...+|+++.+..
T Consensus 263 ~l~~~~i~~vv~t~tip~~~~~~~~~k~~~lsva~lla~aI~~i~ 307 (319)
T 3dah_A 263 RIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIR 307 (319)
T ss_dssp HHHTSSCSEEEEESSSCCCHHHHHCTTEEEECCHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeccccCchhhccCCCeEEEEcHHHHHHHHHHHh
Confidence 111 010 1 12458899999999976654
No 169
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=67.75 E-value=44 Score=32.72 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=45.8
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.--- .|+.+.+.++ .++||++=+|...+.++. . +.|||-||.| |-.+.+....|+..|.
T Consensus 81 ~~d~vV~Spgi~~~~p~~~~a~~-~gi~v~~~~e~l~~~~~~--~--------~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 81 DASVVVVSTAISADNPEIVAARE-ARIPVIRRAEMLAELMRY--R--------HGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TCSEEEECTTSCTTCHHHHHHHH-TTCCEEEHHHHHHHHHTT--S--------EEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCCEEcHHHHHHHHhcC--C--------CEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 68988875322 3556555543 489999998877654332 1 2699999988 4455677788888886
Q ss_pred e
Q 020005 242 E 242 (332)
Q Consensus 242 ~ 242 (332)
.
T Consensus 150 ~ 150 (494)
T 4hv4_A 150 D 150 (494)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=67.61 E-value=37 Score=32.69 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-------HH----------HHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCc
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIW-------HD----------EVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~-------~d----------~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
..+.++...++|||++=.-..++... |. ++.+....|.=. .+...++.++.|
T Consensus 46 A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~-~~~L~~~~~~~G---------- 114 (385)
T 1vli_A 46 AFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEW-ILPLLDYCREKQ---------- 114 (385)
T ss_dssp HHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGG-HHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHH-HHHHHHHHHHcC----------
Confidence 34455667789999998766555331 11 344444455322 245555555554
Q ss_pred eEEEEechhhhchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHHhc-CCh---H---HHHHHHHHHHHHHHhCCC-C
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDALNR-KDV---E---GARNLLRIALQVLLVRAV-N 287 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~ik~-g~~---~---~a~~~l~~~~~~L~~~ga-d 287 (332)
+-++.|.....+- +.|+++|+.++. ++.+.|.-.+ ++.+.+ |.. . ...+.+..+++.+.+.|. +
T Consensus 115 -i~~~stpfD~~sv---d~l~~~~vd~~KIgS~~~~N~pL---L~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~ 187 (385)
T 1vli_A 115 -VIFLSTVCDEGSA---DLLQSTSPSAFKIASYEINHLPL---LKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQ 187 (385)
T ss_dssp -CEEECBCCSHHHH---HHHHTTCCSCEEECGGGTTCHHH---HHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCC
T ss_pred -CcEEEccCCHHHH---HHHHhcCCCEEEECcccccCHHH---HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCc
Confidence 6688887775432 557778888774 7777665223 454432 211 0 135667788888888887 7
Q ss_pred EEEECCC-Cccc
Q 020005 288 TVILASD-DMQD 298 (332)
Q Consensus 288 ~VILGCT-Elpl 298 (332)
.++|=|| .||-
T Consensus 188 iiLlhc~s~YPt 199 (385)
T 1vli_A 188 IAIMHCVAKYPA 199 (385)
T ss_dssp EEEEEECSSSSC
T ss_pred EEEEeccCCCCC
Confidence 7777665 4554
No 171
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=66.66 E-value=13 Score=32.04 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=49.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (332)
.+||| ||..|-...+++..+....- -...+-+.|--+.|+ .+. +.++.
T Consensus 24 ~V~Ii--mGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~-------------------------~l~----~~~~~ 72 (181)
T 4b4k_A 24 LVGVI--MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPD-------------------------YMF----EYAET 72 (181)
T ss_dssp SEEEE--ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHH-------------------------HHH----HHHHH
T ss_pred cEEEE--ECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChH-------------------------HHH----HHHHH
Confidence 59999 88888888888887766542 123344444222222 232 33345
Q ss_pred HHHcCCcEEE-EeCCCchhhHHHHhhhCCCCeeec
Q 020005 161 LEKAGARCIV-MPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 161 Le~~Gad~Iv-I~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.++.|+++|+ .+-..+|.- --+...+..|||++
T Consensus 73 a~~~g~~ViIa~AG~aahLp-GvvAa~T~~PVIGV 106 (181)
T 4b4k_A 73 ARERGLKVIIAGAGGAAHLP-GMVAAKTNLPVIGV 106 (181)
T ss_dssp TTTTTCCEEEEEECSSCCHH-HHHHTTCCSCEEEE
T ss_pred HHhcCceEEEEeccccccch-hhHHhcCCCCEEEE
Confidence 6678988644 444444543 56677788999987
No 172
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=66.66 E-value=14 Score=31.65 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=49.9
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
...++||| ||..|-....++..+....- -..++-+.|-.+.|+ .+ .+.
T Consensus 11 ~~P~V~Ii--mGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~-------------------------~l----~~~ 59 (173)
T 4grd_A 11 SAPLVGVL--MGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPD-------------------------EM----FDY 59 (173)
T ss_dssp SSCSEEEE--ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHH-------------------------HH----HHH
T ss_pred CCCeEEEE--eCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHH-------------------------HH----HHH
Confidence 34578998 88888888888877665432 112344444222222 22 333
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhhhCCCCeeech
Q 020005 158 RVFLEKAGARCI-VMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 158 ~~~Le~~Gad~I-vI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
++..+..|+++| +++--.+|-- --+...+..|||++.
T Consensus 60 ~~~a~~~g~~ViIa~AG~aahLp-gvvA~~t~~PVIgVP 97 (173)
T 4grd_A 60 AEKARERGLRAIIAGAGGAAHLP-GMLAAKTTVPVLGVP 97 (173)
T ss_dssp HHHHTTTTCSEEEEEEESSCCHH-HHHHHHCCSCEEEEE
T ss_pred HHHHHhcCCeEEEEeccccccch-hhheecCCCCEEEEE
Confidence 455677899854 4444445533 456667888998873
No 173
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=65.73 E-value=41 Score=31.21 Aligned_cols=80 Identities=8% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKP 209 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~ 209 (332)
..+.|.+.++.+|+=|..+.... ...+.+..++|+|+. ..+.++.++..+.+
T Consensus 69 a~~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~- 147 (435)
T 1dp4_A 69 AVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWE- 147 (435)
T ss_dssp HHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCc-
Confidence 34556677888777665443322 445555667777653 22445556666665
Q ss_pred CcCCCCceEEEE------echhhh--chhhHHHHHHh-cCCeEE
Q 020005 210 LEAGSPLRIGVL------AKNAIL--TAGFYQEKLQH-EGFEVV 244 (332)
Q Consensus 210 ~~~~~~~rVGlL------aT~~T~--~s~lY~~~l~~-~Gi~vv 244 (332)
+|+++ ..+... ...-+.+.+.+ .|++++
T Consensus 148 -------~v~ii~~~d~~~~~~~~g~~~~~~~~~~~~~~g~~v~ 184 (435)
T 1dp4_A 148 -------HQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVN 184 (435)
T ss_dssp -------SEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEE
T ss_pred -------EEEEEEEccCCCCcchHHHHHHHHHHHHHhhcCeEEE
Confidence 99999 653211 11123455666 798875
No 174
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=63.93 E-value=32 Score=31.97 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHhcCCCCcCCC-CceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEANMKPLEAGS-PLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~g~k~~~~~~-~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++ .+++..- . -. +.+|+++|=
T Consensus 81 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g-~---l~~gl~va~vGD 154 (307)
T 3tpf_A 81 VKDTARVIGAM-VDFVMMRVNK-HETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNK-M---QNGIAKVAFIGD 154 (307)
T ss_dssp HHHHHHHHHHH-SSEEEEECSC-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHTTC-C---GGGCCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-hHHHHHHHHhCCCCEEeCCCCCcCcHHHHHHHHHHHHHhC-C---CCCCCEEEEEcC
Confidence 45566788888 9999998774 78889999999999999765 2222 2333211 1 12 458999996
Q ss_pred hhhhchhhHHHHHHhcCCeEEe
Q 020005 224 NAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
+.--..-+-..+...|+++.+
T Consensus 155 -~~~va~Sl~~~~~~~G~~v~~ 175 (307)
T 3tpf_A 155 -SNNMCNSWLITAAILGFEISI 175 (307)
T ss_dssp -SSHHHHHHHHHHHHHTCEEEE
T ss_pred -CCccHHHHHHHHHHcCCEEEE
Confidence 322233344566777988765
No 175
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=63.76 E-value=43 Score=31.02 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCcEEEE-eCCCc---hhhHHHHhhhCCCCeeec---------------------------hHHHHHHHH
Q 020005 155 RRKRVFLEKAGARCIVM-PCHLS---HIWHDEVCKGCSVPFLHV---------------------------SECVAKELK 203 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI-~CNTa---H~~~d~l~~~~~iPii~I---------------------------ve~t~~~l~ 203 (332)
...++.|...|+.+|+. ++... ..+...+....++|+|+. ..+.++-++
T Consensus 53 ~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~ 132 (364)
T 3qel_B 53 TRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIME 132 (364)
T ss_dssp HHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHH
Confidence 45567787778888775 44321 123677777788888863 234555556
Q ss_pred HhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhc
Q 020005 204 EANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239 (332)
Q Consensus 204 ~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~ 239 (332)
.-|.+ +||++.++. -....+.+.+++.
T Consensus 133 ~fgW~--------~V~iI~~d~-~g~~~~~~~l~~~ 159 (364)
T 3qel_B 133 EYDWY--------IFSIVTTYF-PGYQDFVNKIRST 159 (364)
T ss_dssp HTTCC--------EEEEEEESC-TTHHHHHHHHHHH
T ss_pred HCCCe--------EEEEEEeCC-ccHHHHHHHHHHH
Confidence 66665 999999985 2213355666665
No 176
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=63.66 E-value=25 Score=32.78 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||... +.++ .+++. |. -.+.+|+++|-
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~-----l~glkva~vGD 162 (309)
T 4f2g_A 90 VEDSAQVISRM-VDIIMIRTFE-QDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGP-----IRGKTVAWVGD 162 (309)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHTCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-HHHHHHHHHhCCCCEEECCCCccCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45566778888 9999998874 88889999999999998752 2221 12332 21 13458999996
Q ss_pred hhhhchhhHHHHHHhcCCeEEe
Q 020005 224 NAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
. .--..-+-..+...|+++.+
T Consensus 163 ~-~~va~Sl~~~~~~~G~~v~~ 183 (309)
T 4f2g_A 163 A-NNMLYTWIQAARILDFKLQL 183 (309)
T ss_dssp C-CHHHHHHHHHHHHHTCEEEE
T ss_pred C-cchHHHHHHHHHHcCCEEEE
Confidence 3 22223344566777988765
No 177
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=63.26 E-value=47 Score=30.08 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=8.4
Q ss_pred HhCCCCEEEECC
Q 020005 282 LVRAVNTVILAS 293 (332)
Q Consensus 282 ~~~gad~VILGC 293 (332)
.+.|||.||.|.
T Consensus 225 ~~~gADgvVVGS 236 (267)
T 3vnd_A 225 IKAGAAGAISGS 236 (267)
T ss_dssp HHTTCSEEEECH
T ss_pred HHcCCCEEEECH
Confidence 346778888775
No 178
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=62.62 E-value=39 Score=29.81 Aligned_cols=59 Identities=19% Similarity=0.068 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech-----------H---HHHHHHHHhcCCCCcCCCCceEE
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-----------E---CVAKELKEANMKPLEAGSPLRIG 219 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv-----------e---~t~~~l~~~g~k~~~~~~~~rVG 219 (332)
+.+.++..++.|+.+|-+ ++ -..+.++++.+++|++.+. . ..++++.+.|.+ .|.
T Consensus 38 ~~~~A~a~~~~Ga~~i~~--~~-~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad--------~V~ 106 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVRI--EG-IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAA--------IIA 106 (232)
T ss_dssp HHHHHHHHHHTTCSEEEE--ES-HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCS--------EEE
T ss_pred HHHHHHHHHHCCCeEEEE--CC-HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCC--------EEE
Confidence 345667889999998775 33 3346899999999988521 1 134567777775 665
Q ss_pred EEec
Q 020005 220 VLAK 223 (332)
Q Consensus 220 lLaT 223 (332)
+.++
T Consensus 107 l~~~ 110 (232)
T 3igs_A 107 VDGT 110 (232)
T ss_dssp EECC
T ss_pred ECcc
Confidence 5554
No 179
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=62.32 E-value=24 Score=33.15 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHH-------HHH--HHHHh-cC-C-CCcCCCCceEEEE
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAK--ELKEA-NM-K-PLEAGSPLRIGVL 221 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~-------t~~--~l~~~-g~-k-~~~~~~~~rVGlL 221 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+- .+. .+++. |. . ....-.+.+|+++
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~v 167 (328)
T 3grf_A 90 VQDTAEVFSRM-VDICTARLAT-KEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYC 167 (328)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEE
T ss_pred HHHHHHHHHhh-CCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEe
Confidence 56667778877 9999998874 788899999999999997651 111 12221 20 0 0000123489999
Q ss_pred echhhhchhhHHHHHHhcCCeEEe
Q 020005 222 AKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 222 aT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
|-....-.+-+-..+...|+++.+
T Consensus 168 GD~~~~va~Sl~~~~~~~G~~v~~ 191 (328)
T 3grf_A 168 GDSMNNVTYDLMRGCALLGMECHV 191 (328)
T ss_dssp SCCSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcchHHHHHHHHHHcCCEEEE
Confidence 964111223344556677988765
No 180
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=62.25 E-value=69 Score=28.71 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=70.3
Q ss_pred HHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCeeec----------------------hHHHHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~~~ 213 (332)
.+.+.+.|+++|+=|..+.... ...+.+.-.+|++.. ....++.+.+.|.|
T Consensus 51 ~~~~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k----- 125 (327)
T 3ckm_A 51 IAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVR----- 125 (327)
T ss_dssp HHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcccccCCCeEEEecChHHHHHHHHHHHHhcCCe-----
Confidence 3567788999888776653322 334444445666543 44466677776655
Q ss_pred CCceEEEEechhhhc---hhhHHHHHHhcCCeEEec---CccchhhchHHHHHHHhcCChHH-----HHHHHHHHHHHHH
Q 020005 214 SPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVLP---DKATMEHTLIPALDALNRKDVEG-----ARNLLRIALQVLL 282 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~P---~~~~q~~~l~~~i~~ik~g~~~~-----a~~~l~~~~~~L~ 282 (332)
+++++..+...- ...|++.+++.|.+++.- +..... . ....+++.+.+. .......++..+.
T Consensus 126 ---~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~--~--~~~~~~~~~~dai~~~~~~~~~~~i~~q~~ 198 (327)
T 3ckm_A 126 ---NPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADV--T--YFVQENNSNTTALYAVASPTELAEMKGYLT 198 (327)
T ss_dssp ---SCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHH--H--HHHHHSCTTCCEEEECCCHHHHHHHHHHHT
T ss_pred ---eEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchh--h--HHHHHhccCCcEEEEEcCHHHHHHHHHHHH
Confidence 899999766543 344677788888776431 111111 1 122333332211 1223344445566
Q ss_pred hCCCCEEEECCCCc
Q 020005 283 VRAVNTVILASDDM 296 (332)
Q Consensus 283 ~~gad~VILGCTEl 296 (332)
+.|.+.-+++.+.+
T Consensus 199 ~~g~~~~~~~~~~~ 212 (327)
T 3ckm_A 199 NIVPNLAIYASSRA 212 (327)
T ss_dssp TTCTTCEEEECGGG
T ss_pred hhhccCCEEeeecc
Confidence 67888777776544
No 181
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=62.10 E-value=15 Score=33.90 Aligned_cols=105 Identities=6% Similarity=0.010 Sum_probs=47.3
Q ss_pred CcchhhhccC--eEEEEeCCChHHHHHHHHHHH---HHhccCCCCCEEEecCCcc--hhhhhh-cCCCchhhccccCCCC
Q 020005 72 CSDALLNQAN--TVGIVGGASVDSTLNLLGKLV---QLSGEENDFPFLLCSDPLL--NKELLS-HDRSSFSSLNCKGGGV 143 (332)
Q Consensus 72 ~~~~~~~~~k--~IGIiGGmGp~AT~~~y~kI~---~~t~~d~~~~~vi~s~p~i--p~~ll~-~~~~~~~~~~~~~~~~ 143 (332)
..+.||+.|| +|||| |.|..+.. +.+.+. ......+...++-.-|+.. -+.+.. ++. + ..
T Consensus 15 ~~~~~~~~MkkirvgiI-G~G~ig~~-H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-~---------~~ 82 (393)
T 4fb5_A 15 TENLYFQSMKPLGIGLI-GTGYMGKC-HALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-E---------KA 82 (393)
T ss_dssp ---------CCCEEEEE-CCSHHHHH-HHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-S---------EE
T ss_pred ccCccccCCCCccEEEE-cCCHHHHH-HHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-C---------ee
Confidence 4566888888 58999 58887753 222222 2221115566655444432 221111 010 0 01
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhhhC----CCCeeechHHH
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGC----SVPFLHVSECV 198 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~----~iPii~Ive~t 198 (332)
-.|++++ |++..+|+++|++-+...+ ...+++.. .-|+-.-++++
T Consensus 83 y~d~~el----------l~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea 134 (393)
T 4fb5_A 83 TADWRAL----------IADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADA 134 (393)
T ss_dssp ESCHHHH----------HHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHH
T ss_pred cCCHHHH----------hcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHH
Confidence 1344433 5667899999998664333 45555543 34765555544
No 182
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=61.76 E-value=95 Score=28.23 Aligned_cols=32 Identities=6% Similarity=0.212 Sum_probs=18.4
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEec
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCS 117 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s 117 (332)
.|++||+| |+|..-.. .-+.|.+ .-.++.+|+
T Consensus 2 ~M~kIgfI-GlG~MG~~-mA~~L~~-----~G~~v~v~d 33 (300)
T 3obb_A 2 HMKQIAFI-GLGHMGAP-MATNLLK-----AGYLLNVFD 33 (300)
T ss_dssp -CCEEEEE-CCSTTHHH-HHHHHHH-----TTCEEEEEC
T ss_pred CcCEEEEe-eehHHHHH-HHHHHHh-----CCCeEEEEc
Confidence 48899999 56655533 2233332 134677877
No 183
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=61.74 E-value=61 Score=31.20 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhhhc---hhhHHHHHHhcCCeEEe----cCccchhhchHHHH-HHHhcCCh
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVVL----PDKATMEHTLIPAL-DALNRKDV 267 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i-~~ik~g~~ 267 (332)
.+.++.++..|.+ +||++.++...- ...+++.+++.|+.+.. |...... .+...+ ..+++-..
T Consensus 174 ~a~~~ll~~fgw~--------~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~-d~~~~l~~~i~~s~a 244 (479)
T 3sm9_A 174 KAMAEILRFFNWT--------YVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRK-SYDSVIRELLQKPNA 244 (479)
T ss_dssp HHHHHHHHHTTCC--------EEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHH-HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHCCCe--------EEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChH-HHHHHHHHHHhcCCC
Confidence 3566666666665 999999865432 34466778888988753 3221111 122223 33443111
Q ss_pred H-----HHHHHHHHHHHHHHhCCCCEEEECCCCc
Q 020005 268 E-----GARNLLRIALQVLLVRAVNTVILASDDM 296 (332)
Q Consensus 268 ~-----~a~~~l~~~~~~L~~~gad~VILGCTEl 296 (332)
+ .....+..+++.+.+.|...+.++....
T Consensus 245 ~vIi~~~~~~~~~~l~~~~~~~g~~~~wI~s~~w 278 (479)
T 3sm9_A 245 RVVVLFMRSDDSRELIAAASRANASFTWVASDGW 278 (479)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTT
T ss_pred eEEEEEcChHHHHHHHHHHHHhCCEEEEEEechh
Confidence 0 1122334444555566766666666554
No 184
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=61.29 E-value=52 Score=29.43 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCcEEEEeC
Q 020005 155 RRKRVFLEKAGARCIVMPC 173 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~C 173 (332)
.+.++.|+++|+|.|-+--
T Consensus 34 ~~~~~~l~~~GaD~ieig~ 52 (268)
T 1qop_A 34 LKIIDTLIDAGADALELGV 52 (268)
T ss_dssp HHHHHHHHHTTCSSEEEEC
T ss_pred HHHHHHHHHCCCCEEEECC
Confidence 3455678888888776643
No 185
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=60.97 E-value=32 Score=31.24 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHcCCcEEEEeCC------Cchh-hHHHHhhhCCCCeeechHH-----------------HHHHHHHhcCCCCcCC
Q 020005 158 RVFLEKAGARCIVMPCH------LSHI-WHDEVCKGCSVPFLHVSEC-----------------VAKELKEANMKPLEAG 213 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CN------TaH~-~~d~l~~~~~iPii~Ive~-----------------t~~~l~~~g~k~~~~~ 213 (332)
+..-++.|||-|=+|+| |..+ .+..+++.+++|+.=|+.+ -++.+++.|.+
T Consensus 14 a~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~Gad----- 88 (256)
T 1twd_A 14 ALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFP----- 88 (256)
T ss_dssp HHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCC-----
Confidence 44567899999999998 3333 2677888899999888654 44556777654
Q ss_pred CCceEEEEechhhhchhhHHHHHHhc-CCeEEe
Q 020005 214 SPLRIGVLAKNAILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
.--+|+|..++++....-++.++.. |+++..
T Consensus 89 -GvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTF 120 (256)
T 1twd_A 89 -GLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTF 120 (256)
T ss_dssp -EEEECCBCTTSSBCHHHHHHHHHHHTTSEEEE
T ss_pred -EEEEeeECCCCCcCHHHHHHHHHHhCCCcEEE
Confidence 2368999999999988888887654 777654
No 186
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=60.81 E-value=17 Score=30.86 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=46.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++||| ||..|-....++..+....- -..++-+.|--..|+ .+ .+.++
T Consensus 4 ~~V~Ii--mgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~-------------------------~~----~~~~~ 52 (163)
T 3ors_A 4 MKVAVI--MGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPK-------------------------MM----VQFAS 52 (163)
T ss_dssp CCEEEE--ESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHH-------------------------HH----HHHHH
T ss_pred CeEEEE--ECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHH-------------------------HH----HHHHH
Confidence 467888 77777777888776655432 123344444222222 22 23344
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
..++.|+++|+....-+-..---+...+..|||++
T Consensus 53 ~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 87 (163)
T 3ors_A 53 EARERGINIIIAGAGGAAHLPGMVASLTTLPVIGV 87 (163)
T ss_dssp HTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEE
T ss_pred HHHhCCCcEEEEECCchhhhHHHHHhccCCCEEEe
Confidence 56678888544443333333355666788999886
No 187
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=60.15 E-value=32 Score=32.25 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++ .+++. |. -.+.+|+++|=
T Consensus 93 l~DTarvLs~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~-----l~glkva~vGD 165 (323)
T 3gd5_A 93 VRDTARVLGRY-VDGLAIRTFA-QTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGR-----LAGLKLAYVGD 165 (323)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 55667788888 9999998875 77889999999999999765 1221 12332 21 13458999996
Q ss_pred hhhhchhhHHHHHHhcCCeEEe
Q 020005 224 NAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
.+-+ ..-+-..+...|+++.+
T Consensus 166 ~~rv-a~Sl~~~~~~~G~~v~~ 186 (323)
T 3gd5_A 166 GNNV-AHSLLLGCAKVGMSIAV 186 (323)
T ss_dssp CCHH-HHHHHHHHHHHTCEEEE
T ss_pred CCcH-HHHHHHHHHHcCCEEEE
Confidence 4222 22334456667988765
No 188
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=60.07 E-value=13 Score=35.52 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~~~iPii 192 (332)
+-+++|+++|||.|=+++++.-.. +.+|++.+++|++
T Consensus 50 ~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlv 88 (366)
T 3noy_A 50 NQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVI 88 (366)
T ss_dssp HHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEE
Confidence 345679999999999999995543 7999999999984
No 189
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=59.62 E-value=97 Score=27.63 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-----------------------------hHHHHHHHHHh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------------------SECVAKELKEA 205 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-----------------------------ve~t~~~l~~~ 205 (332)
...++.|.+.++|+|+ +.-|. ......+...++||+-. ++..++.+++.
T Consensus 59 ~~~~~~l~~~~~DlIi-ai~t~-aa~a~~~~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~~~~~~l~l~~~l 136 (302)
T 3lkv_A 59 VQIARQFVGENPDVLV-GIATP-TAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEI 136 (302)
T ss_dssp HHHHHHHHTTCCSEEE-EESHH-HHHHHHHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEE-EcCCH-HHHHHHhhcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCcCHHHHHHHHHHh
Confidence 4455678899999876 33332 22222333446776621 24555666664
Q ss_pred cCCCCcCCCCceEEEEechhhh----chhhHHHHHHhcCCeEEe
Q 020005 206 NMKPLEAGSPLRIGVLAKNAIL----TAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 206 g~k~~~~~~~~rVGlLaT~~T~----~s~lY~~~l~~~Gi~vv~ 245 (332)
. +..++||++..+..- ....+++.+.+.|++++.
T Consensus 137 ~------P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~ 174 (302)
T 3lkv_A 137 L------PNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVE 174 (302)
T ss_dssp S------TTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred C------CCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEE
Confidence 2 345699999876543 334566777778999875
No 190
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=58.36 E-value=1.2e+02 Score=29.89 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhC-CCCeee---chHHHHHHHHHhcCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGC-SVPFLH---VSECVAKELKEANMK 208 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~-~iPii~---Ive~t~~~l~~~g~k 208 (332)
+.++.|.++|+|+|.|-+...|. ++.++++.+ ++|++- .-...++.+.+.|.+
T Consensus 234 ~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD 295 (496)
T 4fxs_A 234 ERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVS 295 (496)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCS
T ss_pred HHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCC
Confidence 34566788999999986654442 356777777 688743 123445667777764
No 191
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=58.26 E-value=59 Score=29.53 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHhhh-CCCCeeech----------HHHHHHHHHhcCCCCcCCCCceEEEEechhhh-chhhHHHHHHhcCCeEE
Q 020005 180 HDEVCKG-CSVPFLHVS----------ECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 180 ~d~l~~~-~~iPii~Iv----------e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~-~s~lY~~~l~~~Gi~vv 244 (332)
..++++. .++|++-|. +.-++.+++.|.+ ||+--+-.. +..-|.+.++++|++.+
T Consensus 88 v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvd----------GvIipDlp~ee~~~~~~~~~~~gl~~I 154 (271)
T 3nav_A 88 IAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVD----------SVLIADVPTNESQPFVAAAEKFGIQPI 154 (271)
T ss_dssp HHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCC----------EEEETTSCGGGCHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCC----------EEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 3555555 677776552 3345556666653 233333332 34456677777777643
No 192
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=58.11 E-value=17 Score=33.67 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-HHHHh-hhCCCCeeec----------------------hHHHHHHHHHhcCCCCc
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW-HDEVC-KGCSVPFLHV----------------------SECVAKELKEANMKPLE 211 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~-~~~~iPii~I----------------------ve~t~~~l~~~g~k~~~ 211 (332)
+.+++|.+.|+++|+=|..+.... .-.+. +..++|+|.. .+.+++.+.+.|.|
T Consensus 47 ~~~~~l~~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~~a~~~g~k--- 123 (325)
T 2h4a_A 47 DIIAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVR--- 123 (325)
T ss_dssp HHHHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSCCCCTTEEECCCCHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccccCCCCeEEEECCHHHHHHHHHHHHHHcCCC---
Confidence 345567788899888777765432 22222 3356666653 33455566666655
Q ss_pred CCCCceEEEEechhhhc---hhhHHHHHHhcCCeEE
Q 020005 212 AGSPLRIGVLAKNAILT---AGFYQEKLQHEGFEVV 244 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~~---s~lY~~~l~~~Gi~vv 244 (332)
||++|+.+...- ...|++.+++.|.+++
T Consensus 124 -----~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv 154 (325)
T 2h4a_A 124 -----NPLVAMPQNDLGQRVGNAFNVRWQQLAGTDA 154 (325)
T ss_dssp -----SCEEEEESSHHHHHHHHHHHHHHHHHHSSCC
T ss_pred -----eEEEEEcCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 888888755443 3345666777776654
No 193
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=58.09 E-value=39 Score=31.95 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++ .+++. |. -.+.+|+++|-
T Consensus 115 l~DTarvLs~y-~D~IviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E~~G~-----l~glkva~vGD 187 (340)
T 4ep1_A 115 VSDTAKVLSHY-IDGIMIRTFS-HADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNT-----FKGIKLAYVGD 187 (340)
T ss_dssp TTHHHHHHHHH-CSEEEEECSC-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 44566778888 9999998774 77889999999999999754 2221 12332 21 13458999996
Q ss_pred hhhhchhhHHHHHHhcCCeEEe
Q 020005 224 NAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
. .--..-+-..+...|+++.+
T Consensus 188 ~-~nva~Sl~~~~~~~G~~v~~ 208 (340)
T 4ep1_A 188 G-NNVCHSLLLASAKVGMHMTV 208 (340)
T ss_dssp C-CHHHHHHHHHHHHHTCEEEE
T ss_pred C-chhHHHHHHHHHHcCCEEEE
Confidence 4 22223344566677988765
No 194
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=58.03 E-value=1.2e+02 Score=29.29 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=46.1
Q ss_pred HcCCcEEEEeCCCchhh-HHHHhhhCCCCeeec--------------------------hHHHHHHHHHhcCCCCcCCCC
Q 020005 163 KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 163 ~~Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I--------------------------ve~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++.+|+=+..+.... ...+-+..++|.|+. ..+.++.++..|.+
T Consensus 126 ~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~------- 198 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWT------- 198 (496)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCC-------
T ss_pred CCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCc-------
Confidence 45566665555554333 445555667777653 33566666666665
Q ss_pred ceEEEEechhhh---chhhHHHHHHhcCCeEE
Q 020005 216 LRIGVLAKNAIL---TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 216 ~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv 244 (332)
+||++.++... -...+++.+++.|++++
T Consensus 199 -~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~ 229 (496)
T 3ks9_A 199 -YVSAVHTEGNYGESGMDAFKELAAQEGLSIA 229 (496)
T ss_dssp -EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -EEEEEEeccHHHHHHHHHHHHHHHHcCceEE
Confidence 99999986543 23446777888898876
No 195
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=58.00 E-value=16 Score=33.65 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=51.5
Q ss_pred CcchhhhccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcch--hhhhh-cCCCchhhccccCCCCCCCHH
Q 020005 72 CSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLN--KELLS-HDRSSFSSLNCKGGGVQLDDS 148 (332)
Q Consensus 72 ~~~~~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip--~~ll~-~~~~~~~~~~~~~~~~~~d~~ 148 (332)
..+.++..|-+|||| |.|..+...+..-+.+ . +...++-..+++.- +.+.. ++. | ..-.|++
T Consensus 15 ~~n~~~~~mirigiI-G~G~ig~~~~~~~~~~-~---~~~~lvav~d~~~~~a~~~a~~~g~-~---------~~y~d~~ 79 (350)
T 4had_A 15 TENLYFQSMLRFGII-STAKIGRDNVVPAIQD-A---ENCVVTAIASRDLTRAREMADRFSV-P---------HAFGSYE 79 (350)
T ss_dssp -------CCEEEEEE-SCCHHHHHTHHHHHHH-C---SSEEEEEEECSSHHHHHHHHHHHTC-S---------EEESSHH
T ss_pred CccccccCccEEEEE-cChHHHHHHHHHHHHh-C---CCeEEEEEECCCHHHHHHHHHHcCC-C---------eeeCCHH
Confidence 456677778899999 6888775544333321 1 34555544444321 11110 110 0 0112444
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhhhC----CCCeeech---HHHHHHHHHhc
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGC----SVPFLHVS---ECVAKELKEAN 206 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~----~iPii~Iv---e~t~~~l~~~g 206 (332)
++ |++..+|+++|++-+...+ ...+++.. .-|+-.-. +..++.+++.+
T Consensus 80 el----------l~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 137 (350)
T 4had_A 80 EM----------LASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK 137 (350)
T ss_dssp HH----------HHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHT
T ss_pred HH----------hcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcC
Confidence 33 5567899999998764332 35555432 34543322 34445555554
No 196
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=57.56 E-value=79 Score=29.76 Aligned_cols=88 Identities=7% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHhcCCCCcCCCCceEEEEech
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEANMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~g~k~~~~~~~~rVGlLaT~ 224 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++ .+++.... ...-.+.+|+++|--
T Consensus 108 l~DTarvLs~~-~D~IviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~~~-G~~l~glkva~vGD~ 184 (339)
T 4a8t_A 108 IEDTSRVLSRL-VDILMARVER-HHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPE-GKKLEDCKVVFVGDA 184 (339)
T ss_dssp HHHHHHHHHHH-CSEEEEECSS-HHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHHTCCT-TCCGGGCEEEEESSC
T ss_pred HHHHHHHHHHh-CCEEEEecCc-HHHHHHHHHhCCCCEEECCCCCcCcHHHHHHHHHHHHHhhc-CCCCCCCEEEEECCC
Confidence 45666788888 9999998874 78889999999999999743 2222 23332100 000124589999964
Q ss_pred hhhchhhHHHHHHhcCCeEEe
Q 020005 225 AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
..-..-+-..+...|+++.+
T Consensus 185 -~rva~Sl~~~~~~~G~~v~~ 204 (339)
T 4a8t_A 185 -TQVCFSLGLITTKMGMNFVH 204 (339)
T ss_dssp -CHHHHHHHHHHHHTTCEEEE
T ss_pred -chhHHHHHHHHHHcCCEEEE
Confidence 22223344567777988765
No 197
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=57.07 E-value=11 Score=37.65 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHH----Hhhh-----CCCCeeechHHHHHHH
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDE----VCKG-----CSVPFLHVSECVAKEL 202 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~----l~~~-----~~iPii~Ive~t~~~l 202 (332)
..+++.-.......++.+++.|||+|+-+|-.=+.-++. +.+. .++|++|+++..+.++
T Consensus 427 ~~~~e~s~~i~~~k~~~a~~tgAd~IvT~Cp~C~~~l~~~q~~~~k~~g~~~~~ipV~h~~eLLa~Al 494 (514)
T 3kwl_A 427 EVNEASGLLQCAHLRYLGIDLGADFLIAHSLGLFYAFENLSLKASKIYKRDNDNTPTLFLPQIALMAM 494 (514)
T ss_dssp GTCHHHHHHHHHHHHHHHHHTTCSEEEESCHHHHHHHTTTHHHHHTTSCSCCCCCCEECHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCEEEecCHHHHHHHHhHhHHHHHhhCCCCCCCcEeeHHHHHHHHc
Confidence 344555555556667888899999999999876665554 4332 4799999999887654
No 198
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=56.85 E-value=1.1e+02 Score=29.89 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhC-CCCeee--c-hHHHHHHHHHhcCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGC-SVPFLH--V-SECVAKELKEANMK 208 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~-~iPii~--I-ve~t~~~l~~~g~k 208 (332)
+.++.+.++|+|+|.+-++--|. .++++++.+ ++||+- + ....++.+.+.|.+
T Consensus 258 ~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad 319 (514)
T 1jcn_A 258 YRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVD 319 (514)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCC
Confidence 44566788999999983332222 257777887 788873 2 23445666677764
No 199
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=56.01 E-value=77 Score=30.97 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEEechhhh---chhhHHHHHHhcCCeEEe----cCccchhhchHHHHHHHhc--C-
Q 020005 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAIL---TAGFYQEKLQHEGFEVVL----PDKATMEHTLIPALDALNR--K- 265 (332)
Q Consensus 196 e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~---~s~lY~~~l~~~Gi~vv~----P~~~~q~~~l~~~i~~ik~--g- 265 (332)
.+.++.++..|.+ +||++.++... ....+++.+++.|+.++. |...... .+...+..++. +
T Consensus 175 ~a~~~ll~~fgw~--------~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~-~~~~~l~~i~~~s~a 245 (555)
T 2e4u_A 175 KAMAEILRFFNWT--------YVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRK-SYDSVIRELLQKPNA 245 (555)
T ss_dssp HHHHHHHHHTTCC--------EEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHH-HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHcCCe--------EEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChH-HHHHHHHHHhccCCC
Confidence 3455566665665 99999986542 234567778888988742 3211111 13333556642 1
Q ss_pred Ch---HHHHHHHHHHHHHHHhCCCCEEEECCCC
Q 020005 266 DV---EGARNLLRIALQVLLVRAVNTVILASDD 295 (332)
Q Consensus 266 ~~---~~a~~~l~~~~~~L~~~gad~VILGCTE 295 (332)
++ -.....+..+++.+.+.|.+.+.++...
T Consensus 246 ~vIi~~~~~~~~~~~~~~~~~~g~~~~~i~s~~ 278 (555)
T 2e4u_A 246 RVVVLFMRSDDSRELIAAANRVNASFTWVASDG 278 (555)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCCCEEEECTT
T ss_pred CEEEEEcCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 11 0011223334445555666777776543
No 200
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=55.88 E-value=23 Score=30.29 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=47.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
..+||| ||..|-....++..+....- -..++-+.|--..|+ .+ .+.++
T Consensus 12 ~~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~-------------------------~l----~~~~~ 60 (170)
T 1xmp_A 12 SLVGVI--MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPD-------------------------YM----FEYAE 60 (170)
T ss_dssp CSEEEE--ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHH-------------------------HH----HHHHH
T ss_pred CcEEEE--ECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHH-------------------------HH----HHHHH
Confidence 468888 78888888888887665432 123344444222222 22 23334
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
..++.|+++|+....-+-..---+...+..|||++.
T Consensus 61 ~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP 96 (170)
T 1xmp_A 61 TARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVP 96 (170)
T ss_dssp HTTTTTCCEEEEEEESSCCHHHHHHTTCCSCEEEEE
T ss_pred HHHhCCCcEEEEECCchhhhHHHHHhccCCCEEEee
Confidence 566778885433333322233566677889999873
No 201
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=55.57 E-value=74 Score=30.10 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-------hHHHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------SECVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-------ve~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++|||+- .++.++. +++. +.+. -.+.+|+++|-
T Consensus 115 l~DTarvLs~~-~D~IviR~~~-~~~~~~la~~s~vPVING~g~~~HPtQaL~Dl~Ti~e~~~~~~---l~gl~ia~vGD 189 (358)
T 4h31_A 115 MKDTARVLGRM-YDGIQYRGFG-QAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKA---LADIQFAYLGD 189 (358)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHHSSSCEEESCCSSCCHHHHHHHHHHHHHTTTTCC---GGGCEEEEESC
T ss_pred hhHHHHHhhcc-CceeEecccc-hhHHHHhhhhccCceECCCCcCCCchHHHHHHHHHHHHhcCCC---cCceEEEecCC
Confidence 55667788888 9999998774 888899999999999983 2233332 2221 1100 12358999994
Q ss_pred h--hhhchhhHHHHHHhcCCeEEe
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
- .+.. -+-..+...|+++.+
T Consensus 190 ~~~~va~--S~~~~~~~~g~~v~~ 211 (358)
T 4h31_A 190 ARNNVGN--SLMVGAAKMGMDIRL 211 (358)
T ss_dssp TTSHHHH--HHHHHHHHHTCEEEE
T ss_pred CCcccch--HHHHHHHhcCceEEE
Confidence 2 2332 233556677988765
No 202
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=55.52 E-value=46 Score=33.02 Aligned_cols=161 Identities=6% Similarity=-0.084 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHH----H----------hh---h----C--CCCeeechHHHHHHH
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDE----V----------CK---G----C--SVPFLHVSECVAKEL 202 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~----l----------~~---~----~--~iPii~Ive~t~~~l 202 (332)
+++.......+.+..+++.|+| ||.+|.+-...+.+ + ++ . + ...+.|+.+..++..
T Consensus 301 ~~~~a~~la~rNi~~~~~~g~d-IVt~c~sC~~~lk~~~~~l~~dp~~~~~~~~~~~~~gl~y~g~~~V~h~~e~L~~~~ 379 (514)
T 3kwl_A 301 STHDFLTASAYNLALAKANGVS-LIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKYQLVYEKDIEIVYLNEWVNEFL 379 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCE-EEECSHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGTCCCCSCCCEEEHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccccCCCcceeeHHHHHHHhc
Confidence 5555555555566677788998 99999875433221 1 11 1 1 345888877666432
Q ss_pred HHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020005 203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLL 282 (332)
Q Consensus 203 ~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~ 282 (332)
.-.-.+|+. . --+--..+. .+ +++.|+.-|.+.+.+-+..+. - ....-...+.+.+.....++.+.
T Consensus 380 ~l~v~~pl~--~--yd~Chl~R~---~~-~~~LL~~lg~~~~v~~~~~~c--C----G~~~~~~~e~s~~i~~~k~~~a~ 445 (514)
T 3kwl_A 380 AWELKSPFD--A--FVGAEFSRI---KQ-SDHFFNKIHLKAPHFLESFQN--Y----APLLEVNEASGLLQCAHLRYLGI 445 (514)
T ss_dssp CSCCCSCCT--T--CBEEEECSS---CC-CHHHHHHHTCBCCCCGGGGCC--C----GGGGGTCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCC--C--cCCcccCCc---cc-HHHHHHHCCCCcccCCCccce--e----ccchhcCHHHHHHHHHHHHHHHH
Confidence 100001110 0 011111111 11 567777777652222111110 1 01111122336677777778888
Q ss_pred hCCCCEEEECCCCcccCCC--------C--CCCCCCceechHHHHHHHH
Q 020005 283 VRAVNTVILASDDMQDLLP--------P--DDPLLKKCIDPMDALARST 321 (332)
Q Consensus 283 ~~gad~VILGCTElpli~~--------~--~~~~~ipvID~~~~lA~a~ 321 (332)
+.|||+|+-+|.-=-+-++ . .+...+|+++.++.|+.+.
T Consensus 446 ~tgAd~IvT~Cp~C~~~l~~~q~~~~k~~g~~~~~ipV~h~~eLLa~Al 494 (514)
T 3kwl_A 446 DLGADFLIAHSLGLFYAFENLSLKASKIYKRDNDNTPTLFLPQIALMAM 494 (514)
T ss_dssp HTTCSEEEESCHHHHHHHTTTHHHHHTTSCSCCCCCCEECHHHHHHHHT
T ss_pred HcCCCEEEecCHHHHHHHHhHhHHHHHhhCCCCCCCcEeeHHHHHHHHc
Confidence 8999999999932111111 1 1123579999999999874
No 203
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=55.39 E-value=61 Score=29.35 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhCCCCeee---chHH-HHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH---VSEC-VAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~~iPii~---Ive~-t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
.+.++..++.||++|=+-+..-.. .+.++++.+++|++- +++. .++.++..|.+ .|.|....-
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD--------~VlLi~a~l 146 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGAD--------MLLLIVAAL 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCS--------EEEEEGGGS
T ss_pred HHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCC--------EEEEecccC
Confidence 345677899999999776554211 246677889999873 3445 47778888765 454432211
Q ss_pred h-hchhhHHHHHHhcCCeEEe
Q 020005 226 I-LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 226 T-~~s~lY~~~l~~~Gi~vv~ 245 (332)
. -+..-+-+...+.|++++.
T Consensus 147 ~~~~l~~l~~~a~~lGl~~lv 167 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMTALV 167 (272)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHCCCcEEE
Confidence 1 1112233445566887654
No 204
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=54.97 E-value=52 Score=28.48 Aligned_cols=75 Identities=11% Similarity=0.078 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCcEEEEeC--------CCchhhHHHHhhhCCCCeeec---h-HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPC--------HLSHIWHDEVCKGCSVPFLHV---S-ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~C--------NTaH~~~d~l~~~~~iPii~I---v-e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.++++|+|.|-+-. .+. .++.++++.+++|++-- . ..-++.+.+.|.+ .-++++
T Consensus 36 ~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad---------~V~lg~ 105 (244)
T 1vzw_A 36 EAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCT---------RVNLGT 105 (244)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCS---------EEEECH
T ss_pred HHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCC---------EEEECc
Confidence 345678899999998743 222 45788888889998631 1 1235566666653 445676
Q ss_pred hhhhchhhHHHHHHhcC
Q 020005 224 NAILTAGFYQEKLQHEG 240 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~G 240 (332)
...-......+.++..|
T Consensus 106 ~~l~~p~~~~~~~~~~g 122 (244)
T 1vzw_A 106 AALETPEWVAKVIAEHG 122 (244)
T ss_dssp HHHHCHHHHHHHHHHHG
T ss_pred hHhhCHHHHHHHHHHcC
Confidence 55444445556665555
No 205
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=54.09 E-value=71 Score=30.24 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHhcCCCCc----------CCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEANMKPLE----------AGS 214 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~g~k~~~----------~~~ 214 (332)
+.+.++-|.+. +|+|+|=.. .|..++++.+.+++||||..+ +.++ .+++..-+ +. .-.
T Consensus 111 l~DTarvLs~~-~D~IviR~~-~~~~~~~lA~~s~vPVINag~d~~HPtQaLaDl~TI~E~~G~-~~~~~~~~~~~~~l~ 187 (353)
T 3sds_A 111 LYDTSVVISSM-VSCIVARVG-PHSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFAS-QSATHGTHPSSLGLE 187 (353)
T ss_dssp HHHHHHHHHTS-CSEEEEECS-SHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHTC---------CTTCCSCT
T ss_pred HHHHHHHHHHh-cCEEEEEeC-ChHHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHhCC-CcccccccccccccC
Confidence 56667788888 899998766 477789999999999999852 2222 13332110 00 003
Q ss_pred CceEEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 215 PLRIGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
+.+|+++|=-.- -..-+-..+...|+++.+
T Consensus 188 glkva~vGD~~n-va~Sl~~~l~~lG~~v~~ 217 (353)
T 3sds_A 188 GLKIAWVGDANN-VLFDLAIAATKMGVNVAV 217 (353)
T ss_dssp TCEEEEESCCCH-HHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECCCch-HHHHHHHHHHHcCCEEEE
Confidence 458999985321 123344556777988765
No 206
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=53.99 E-value=49 Score=26.84 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCC-CchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDR-SSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGA 166 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~-~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Ga 166 (332)
|.|...+.+++.++-+..... .+.+|++. .|. |.. ...+.++..+.+.+.++.+.+.|+
T Consensus 41 g~~G~~~~~~~~~~~~~~~~~-~pd~Vii~----------~G~ND~~---------~~~~~~~~~~~l~~li~~~~~~~~ 100 (190)
T 1ivn_A 41 SISGDTSQQGLARLPALLKQH-QPRWVLVE----------LGGNDGL---------RGFQPQQTEQTLRQILQDVKAANA 100 (190)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH-CCSEEEEE----------CCTTTTS---------SSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHHHHhc-CCCEEEEE----------eeccccc---------cCCCHHHHHHHHHHHHHHHHHcCC
Confidence 666655556666554433222 35676655 121 211 122456777888888899999899
Q ss_pred cEEEEeC
Q 020005 167 RCIVMPC 173 (332)
Q Consensus 167 d~IvI~C 173 (332)
..+++..
T Consensus 101 ~vil~~~ 107 (190)
T 1ivn_A 101 EPLLMQI 107 (190)
T ss_dssp EEEEECC
T ss_pred CEEEEec
Confidence 9887743
No 207
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=53.72 E-value=76 Score=28.29 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-----hhhHHHHhhhCCCCee---e-chHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 156 RKRVFLEKAGARCIVMPCHLS-----HIWHDEVCKGCSVPFL---H-VSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa-----H~~~d~l~~~~~iPii---~-Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
+.++..+++||++|=+.+-.- -..+..+++.+++||+ - +-+.-+..+...|.+ .|.|.++.-+
T Consensus 69 ~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD--------~VlL~~~~l~ 140 (254)
T 1vc4_A 69 EAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGAS--------AALLIVALLG 140 (254)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCS--------EEEEEHHHHG
T ss_pred HHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCC--------EEEECccchH
Confidence 456678899999998854421 1236788899999943 1 122255667777775 6666665443
Q ss_pred hchhhHHHHHH---hcCCeEEe
Q 020005 227 LTAGFYQEKLQ---HEGFEVVL 245 (332)
Q Consensus 227 ~~s~lY~~~l~---~~Gi~vv~ 245 (332)
..+++.++ ..|+++++
T Consensus 141 ---~~l~~l~~~a~~lGl~~lv 159 (254)
T 1vc4_A 141 ---ELTGAYLEEARRLGLEALV 159 (254)
T ss_dssp ---GGHHHHHHHHHHHTCEEEE
T ss_pred ---HHHHHHHHHHHHCCCeEEE
Confidence 34555554 56988753
No 208
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=53.50 E-value=80 Score=29.53 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=19.5
Q ss_pred hhhccCeEEEEeCCChHHHHHHHHHHHHHhc
Q 020005 76 LLNQANTVGIVGGASVDSTLNLLGKLVQLSG 106 (332)
Q Consensus 76 ~~~~~k~IGIiGGmGp~AT~~~y~kI~~~t~ 106 (332)
+|+..++||.|||+--.....|+.-..+...
T Consensus 145 ~~tk~~kIGfVgg~~~p~v~~~~~GF~~G~k 175 (356)
T 3s99_A 145 KMSKKGIAGYIGSVPVPEVVQGINSFMLGAQ 175 (356)
T ss_dssp HHCSSCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCccHHHHHHHHHHHHHHH
Confidence 5566789999999844444455544444443
No 209
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=53.47 E-value=53 Score=31.27 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCC---------CchhhHHHHhhhCCCCeeechHH------HHH--HHHHh-cCCCCcCCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCH---------LSHIWHDEVCKGCSVPFLHVSEC------VAK--ELKEA-NMKPLEAGSP 215 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CN---------TaH~~~d~l~~~~~iPii~Ive~------t~~--~l~~~-g~k~~~~~~~ 215 (332)
+.+.++-|.+. +|+|+|=+. -.|..+.++.+.+++||||..+- .++ .+++. |. + .-.+
T Consensus 115 l~DTarvLs~y-~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINag~g~HPtQaLaDl~TI~E~~g~-~--~l~g 190 (359)
T 1zq6_A 115 IAEVARVLGRY-VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGT-P--DLRG 190 (359)
T ss_dssp HHHHHHHHHHH-CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESSSSCCHHHHHHHHHHHHHHHTS-S--CCTT
T ss_pred HHHHHHHHHHh-CcEEEEeccccccccccccchHHHHHHHHhCCCCEEeCCCCCCcHHHHHHHHHHHHHhCC-C--cccC
Confidence 55667788888 999999888 14778899999999999997652 111 12222 21 0 0124
Q ss_pred ce--EEEEech---hhhchhhHHHHHHhcCCeEEe
Q 020005 216 LR--IGVLAKN---AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 216 ~r--VGlLaT~---~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
.+ |+++|-- +..-..-+-..+...|+++.+
T Consensus 191 lkvvva~vGDl~~~~nrva~Sl~~~~~~~G~~v~~ 225 (359)
T 1zq6_A 191 KKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTL 225 (359)
T ss_dssp CEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEE
T ss_pred CeeEEEEEecccccccchHHHHHHHHHHcCCEEEE
Confidence 58 8888861 122223345567778988765
No 210
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=52.83 E-value=60 Score=28.00 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCcEEEEeC--------CCchhhHHHHhhhCCCCeee--ch--HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPC--------HLSHIWHDEVCKGCSVPFLH--VS--ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~C--------NTaH~~~d~l~~~~~iPii~--Iv--e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.++++|+|.|-+-. .+. .++.++++.+++|++- .+ ..-++.+.+.|.. ..++++
T Consensus 35 ~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad---------~V~lg~ 104 (244)
T 2y88_A 35 DAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCA---------RVNVGT 104 (244)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCS---------EEEECH
T ss_pred HHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCC---------EEEECc
Confidence 445678899999998853 222 5578888888999863 11 1335666666653 446777
Q ss_pred hhhhchhhHHHHHHhcC
Q 020005 224 NAILTAGFYQEKLQHEG 240 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~G 240 (332)
...-......+.++..|
T Consensus 105 ~~l~~p~~~~~~~~~~g 121 (244)
T 2y88_A 105 AALENPQWCARVIGEHG 121 (244)
T ss_dssp HHHHCHHHHHHHHHHHG
T ss_pred hHhhChHHHHHHHHHcC
Confidence 55544445666666655
No 211
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=52.72 E-value=60 Score=30.07 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch------------hhHHHHhhhCCCCeeechH----HHHHHHHHhc-CCCCcCCCCc
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH------------IWHDEVCKGCSVPFLHVSE----CVAKELKEAN-MKPLEAGSPL 216 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH------------~~~d~l~~~~~iPii~Ive----~t~~~l~~~g-~k~~~~~~~~ 216 (332)
..+.++.|++.|+|+|-+..-|.+ .+..++++.+++||+.... ..++.+.+.| .
T Consensus 231 ~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~a--------- 301 (338)
T 1z41_A 231 HIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRA--------- 301 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSC---------
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCc---------
Confidence 345677899999999998654311 2356777778888886432 3334444444 3
Q ss_pred eEEEEechhhhchhhHHHHHHhcCCeE
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHEGFEV 243 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~Gi~v 243 (332)
-...+|+.......+..+..+..+-++
T Consensus 302 D~V~iGR~~i~nPdl~~ki~~~~~~~i 328 (338)
T 1z41_A 302 DLIFIGRELLRDPFFARTAAKQLNTEI 328 (338)
T ss_dssp SEEEECHHHHHCTTHHHHHHHHTTCCC
T ss_pred eEEeecHHHHhCchHHHHHHcCCCccc
Confidence 355677766666666666555554443
No 212
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=52.49 E-value=1.6e+02 Score=28.49 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhC-CCCee---echHHHHHHHHHhcCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGC-SVPFL---HVSECVAKELKEANMK 208 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~-~iPii---~Ive~t~~~l~~~g~k 208 (332)
+.+++|.++|+|++.+-++--|. .++++++.+ ++|++ ..-.+.++.+.+.|.+
T Consensus 240 ~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d 301 (494)
T 1vrd_A 240 ERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGAD 301 (494)
T ss_dssp HHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCC
Confidence 45677889999999996653332 256777777 68875 2223344666677664
No 213
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=52.31 E-value=51 Score=27.76 Aligned_cols=84 Identities=11% Similarity=-0.057 Sum_probs=47.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++||+ ||..|-....++..+....- -...+-+.|--..| +.+.+ .++
T Consensus 3 ~~V~Ii--mgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p-------------------------~~~~~----~~~ 51 (159)
T 3rg8_A 3 PLVIIL--MGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTA-------------------------EHVVS----MLK 51 (159)
T ss_dssp CEEEEE--ESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCH-------------------------HHHHH----HHH
T ss_pred CeEEEE--ECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCH-------------------------HHHHH----HHH
Confidence 368888 77777777777776655432 11233444422222 22322 333
Q ss_pred HHHHc-CCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 160 FLEKA-GARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 160 ~Le~~-Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
..++. |+++|+....-+-..---+...+..|||++.
T Consensus 52 ~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP 88 (159)
T 3rg8_A 52 EYEALDRPKLYITIAGRSNALSGFVDGFVKGATIACP 88 (159)
T ss_dssp HHHTSCSCEEEEEECCSSCCHHHHHHHHSSSCEEECC
T ss_pred HhhhcCCCcEEEEECCchhhhHHHHHhccCCCEEEee
Confidence 45554 6887655555444444666777889999873
No 214
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=52.24 E-value=97 Score=28.65 Aligned_cols=85 Identities=11% Similarity=0.014 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH--------HHHH--HHHHh-cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE--------CVAK--ELKEA-NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive--------~t~~--~l~~~-g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+.. |+|+|=... |....++.+.+++||||..+ +.+. .+++. |. -.+.+|+++|
T Consensus 86 l~DTarvls~~~-D~iviR~~~-~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~-----l~glkva~vG 158 (306)
T 4ekn_B 86 LIDTIRVISGYA-DIIVLRHPS-EGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGR-----IDGIKIAFVG 158 (306)
T ss_dssp HHHHHHHHHHHC-SEEEEECSS-TTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSC-----STTCEEEEES
T ss_pred HHHHHHHHHHhC-cEEEEEcCC-hHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCC-----cCCCEEEEEc
Confidence 455667788885 999998875 77788999999999999864 1111 22332 21 1345899999
Q ss_pred chh-hhchhhHHHHHHhc-CCeEEe
Q 020005 223 KNA-ILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 223 T~~-T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
--. ..-.+-+-..+... |+++.+
T Consensus 159 D~~~~rva~Sl~~~~~~~~G~~v~~ 183 (306)
T 4ekn_B 159 DLKYGRTVHSLVYALSLFENVEMYF 183 (306)
T ss_dssp CTTTCHHHHHHHHHHHTSSSCEEEE
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEE
Confidence 521 11223344567788 888765
No 215
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=51.66 E-value=87 Score=29.68 Aligned_cols=88 Identities=7% Similarity=0.020 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHhcCCCCcCCCCceEEEEech
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEANMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~g~k~~~~~~~~rVGlLaT~ 224 (332)
+.+.++-|.+. +|+|+|=... |..+.++.+.+++||||..+ +.++ .+++...+ ...-.+.+|+++|--
T Consensus 86 l~DTarvLs~y-~D~IviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E~~~~-G~~l~glkva~vGD~ 162 (355)
T 4a8p_A 86 IEDTSRVLSRL-VDILMARVER-HHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPE-GKKLEDCKVVFVGDA 162 (355)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHHTCCT-TCCGGGCEEEEESCC
T ss_pred HHHHHHHHHHh-CCEEEEecCc-HHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCEEEEECCC
Confidence 45666778888 9999998874 78889999999999999744 2222 23332100 000124589999964
Q ss_pred hhhchhhHHHHHHhcCCeEEe
Q 020005 225 AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
..-..-+-..+...|+++.+
T Consensus 163 -~rva~Sl~~~~~~~G~~v~~ 182 (355)
T 4a8p_A 163 -TQVCFSLGLITTKMGMNFVH 182 (355)
T ss_dssp -CHHHHHHHHHHHHTTCEEEE
T ss_pred -chhHHHHHHHHHHcCCEEEE
Confidence 22223344566777988765
No 216
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=51.53 E-value=40 Score=31.97 Aligned_cols=127 Identities=9% Similarity=0.057 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhH--H--------------HHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCce
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWH--D--------------EVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~--d--------------~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
..+.++...++|||++=.-..++...+ + ++.+....|.=. .+...++.++. -
T Consensus 37 a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~-~~~L~~~~~~~-----------G 104 (349)
T 2wqp_A 37 AFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEED-EIKLKEYVESK-----------G 104 (349)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHH-HHHHHHHHHHT-----------T
T ss_pred HHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHH-HHHHHHHHHHh-----------C
Confidence 344556677899999988766553310 0 222222333111 12333334443 3
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHHhc-CCh---H---HHHHHHHHHHHHHHhCCCCEE
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDALNR-KDV---E---GARNLLRIALQVLLVRAVNTV 289 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~ik~-g~~---~---~a~~~l~~~~~~L~~~gad~V 289 (332)
+.++.|.....+- +.++++|+.++. ++.+.|.-.+ ++.+.+ |.. . ...+.+..+++.+.+.|.+.+
T Consensus 105 i~~~st~~d~~sv---d~l~~~~v~~~KI~S~~~~n~~L---L~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~~ii 178 (349)
T 2wqp_A 105 MIFISTLFSRAAA---LRLQRMDIPAYKIGSGECNNYPL---IKLVASFGKPIILSTGMNSIESIKKSVEIIREAGVPYA 178 (349)
T ss_dssp CEEEEEECSHHHH---HHHHHHTCSCEEECGGGTTCHHH---HHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCCEE
T ss_pred CeEEEeeCCHHHH---HHHHhcCCCEEEECcccccCHHH---HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 6688887775432 456777887774 7766665323 444432 111 0 135667777888887788988
Q ss_pred EECCCC-ccc
Q 020005 290 ILASDD-MQD 298 (332)
Q Consensus 290 ILGCTE-lpl 298 (332)
+|=||- ||-
T Consensus 179 Llhc~s~Yp~ 188 (349)
T 2wqp_A 179 LLHCTNIYPT 188 (349)
T ss_dssp EEECCCCSSC
T ss_pred EEeccCCCCC
Confidence 887764 553
No 217
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=51.06 E-value=81 Score=27.29 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCeeec-----hHHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFLHV-----SECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii~I-----ve~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
+.++.++++|+|.|-+-.-+.+. .+.++++.+++|++-. .+. ++.+.+.|.. .| +++
T Consensus 34 ~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~-~~~~~~~Gad--------~V-~lg 103 (253)
T 1thf_D 34 ELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET-ASELILRGAD--------KV-SIN 103 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHH-HHHHHHTTCS--------EE-EES
T ss_pred HHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCC--------EE-EEC
Confidence 34567899999998776554331 2466778889998842 233 4555666654 34 677
Q ss_pred chhhhchhhHHHHHHhcCC
Q 020005 223 KNAILTAGFYQEKLQHEGF 241 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi 241 (332)
+...-....+.+.++..|.
T Consensus 104 ~~~l~~p~~~~~~~~~~g~ 122 (253)
T 1thf_D 104 TAAVENPSLITQIAQTFGS 122 (253)
T ss_dssp HHHHHCTHHHHHHHHHHCG
T ss_pred hHHHhChHHHHHHHHHcCC
Confidence 7655555667777766663
No 218
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=50.91 E-value=25 Score=32.40 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHD 181 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d 181 (332)
+.++.++.|+|+++++--|+|-.|.
T Consensus 160 a~~Fv~~TgvD~LAvaiGt~HG~Y~ 184 (286)
T 1gvf_A 160 AKRFVELTGVDSLAVAIGTAHGLYS 184 (286)
T ss_dssp HHHHHHHHCCSEEEECSSCCSSCCS
T ss_pred HHHHHHHHCCCEEEeecCccccCcC
Confidence 4456778999999999999998653
No 219
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=49.88 E-value=70 Score=30.52 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec-----hHHHHHHHHHhcCCCCcCCCCceEEEEechh-----hh
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----SECVAKELKEANMKPLEAGSPLRIGVLAKNA-----IL 227 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I-----ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-----T~ 227 (332)
++.+.+..+|.|++..+-.+-. ..+....++ .|.+ ...+++++.++|++ +|+.++.+. +.
T Consensus 104 i~~lkekrvDgIIi~~~~~ed~-~~i~~~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk--------~Ia~Isgp~~~~~~~~ 173 (371)
T 3qi7_A 104 LQKVKEKRPEIITISAPMGDDK-NQLSQFVDV-NLGVSAEERGKVLAERSKEMGAK--------AFIHYASTDDLKDVNI 173 (371)
T ss_dssp HHHHHHHCTTSEEEESSCCSCH-HHHHHHSSE-EEECCHHHHHHHHHHHHHHTTCS--------CEEEEEETTGGGSHHH
T ss_pred HHHHHhcCCCEEEEeccccccc-hhhcccCce-EEEeChHHHHHHHHHHHHHCCCC--------EEEEEeccccccchhH
Confidence 4557778899877776422221 112223444 4443 34567888888887 999887543 12
Q ss_pred --chhhHHHHHHhcCCeEE
Q 020005 228 --TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 228 --~s~lY~~~l~~~Gi~vv 244 (332)
+..-|++.|+++|++..
T Consensus 174 ~~R~~Gyk~Al~e~Gi~~~ 192 (371)
T 3qi7_A 174 AKRLEMIKETCKNIGLPFV 192 (371)
T ss_dssp HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHcCCCce
Confidence 23348999999999764
No 220
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=49.80 E-value=28 Score=30.11 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=62.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (332)
-..+||| ||..|-....++..+....- -..++-+.|--..| +.+ .+.+
T Consensus 13 ~~~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p-------------------------~~l----~~~~ 61 (183)
T 1o4v_A 13 VPRVGII--MGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTP-------------------------DRM----FEYA 61 (183)
T ss_dssp -CEEEEE--ESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCH-------------------------HHH----HHHH
T ss_pred CCeEEEE--eccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCH-------------------------HHH----HHHH
Confidence 4578888 77777777887776655432 11333343422222 222 2333
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHH-----HH---HHHHhcCCCCcCCCCceEEEEechhhhchh
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV-----AK---ELKEANMKPLEAGSPLRIGVLAKNAILTAG 230 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t-----~~---~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~ 230 (332)
+..++.|+++|+....-+-..---+...+..|||++.-.+ .. .+.++ ++.--|+.++-.+....+
T Consensus 62 ~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSivqm-------P~GvpVatV~Id~~~nAa 134 (183)
T 1o4v_A 62 KNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQM-------PGGVPVATVAINNAKNAG 134 (183)
T ss_dssp HHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHTC-------CTTCCCEECCTTCHHHHH
T ss_pred HHHHhCCCcEEEEecCcccccHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcC-------CCCCeeEEEecCCchHHH
Confidence 4566778885443333322233556667889998873322 11 22333 111137777766666666
Q ss_pred hHHHHH
Q 020005 231 FYQEKL 236 (332)
Q Consensus 231 lY~~~l 236 (332)
++.-.+
T Consensus 135 ~lAaqI 140 (183)
T 1o4v_A 135 ILAASI 140 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 221
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=48.93 E-value=1.3e+02 Score=28.29 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHhcCCCCcCCCCceEEEEech
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEANMKPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~g~k~~~~~~~~rVGlLaT~ 224 (332)
+.+.++-|.+. +|+|++=.. .|..++++.+.+++||||... +.++. +++..-+++ .+.+|+++|--
T Consensus 90 l~DTarvLs~~-~D~IviR~~-~~~~~~~lA~~s~vPVINa~~~~~HPtQ~LaDl~Ti~e~~g~~l---~gl~va~vGD~ 164 (335)
T 1dxh_A 90 MKDTARVLGRM-YDAIEYRGF-KQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPL---HDISYAYLGDA 164 (335)
T ss_dssp HHHHHHHHHHH-CSEEEEECS-CHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHHHHHHTCSSCG---GGCEEEEESCC
T ss_pred HHHHHHHHHhh-CCEEEEecC-ChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHcCCCc---CCeEEEEecCC
Confidence 45566778888 799999886 488889999999999999643 22222 333211011 23589999973
Q ss_pred --hhhchhhHHHHHHhcCCeEEecC
Q 020005 225 --AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 225 --~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
.+..| +-..+...|+++.+-.
T Consensus 165 ~~~va~S--l~~~~~~~G~~v~~~~ 187 (335)
T 1dxh_A 165 RNNMGNS--LLLIGAKLGMDVRIAA 187 (335)
T ss_dssp SSHHHHH--HHHHHHHTTCEEEEEC
T ss_pred ccchHHH--HHHHHHHcCCEEEEEC
Confidence 33333 3345667798887633
No 222
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=48.90 E-value=93 Score=29.07 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=.. .|..++++.+.+++||||..+ +.++. +++. |. -.+.+|+++|-
T Consensus 103 l~DTarvLs~~-~D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 175 (325)
T 1vlv_A 103 LEDTARVLGRM-VDAIMFRGY-KQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGR-----LKGVKVVFMGD 175 (325)
T ss_dssp HHHHHHHHHTT-CSEEEEESS-CHHHHHHHHHHHCSCEEESCCSSCCHHHHHHHHHHHHHHHSC-----STTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEECC-ChHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45666788888 799999887 488889999999999999744 22211 2222 21 13458999998
Q ss_pred h--hhhchhhHHHHHHhcCCeEEecC
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
. .+.. -+-..+...|+++.+-.
T Consensus 176 ~~~rva~--Sl~~~~~~~G~~v~~~~ 199 (325)
T 1vlv_A 176 TRNNVAT--SLMIACAKMGMNFVACG 199 (325)
T ss_dssp TTSHHHH--HHHHHHHHTTCEEEEES
T ss_pred CCcCcHH--HHHHHHHHCCCEEEEEC
Confidence 3 3333 33445677798887633
No 223
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=48.79 E-value=92 Score=29.64 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHH--HHHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAK--ELKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~--~l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|++=... |..+.++.+.+++||||... +.+. .+++. |. -.+.+|+++|-
T Consensus 116 l~DTarvLs~~-~D~IviR~~~-~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E~~G~-----l~glkva~vGD 188 (365)
T 4amu_A 116 IEDTAKVLGRF-YDGIEFRGFA-QSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKEKFGN-----LKNKKIVFIGD 188 (365)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHHHHSS-----CTTCEEEEESS
T ss_pred HHHHHHHHHhh-CcEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45666778888 8999997664 77789999999999998732 2222 12332 21 13458999996
Q ss_pred hhhhchhhHHHHHHhcCCeEEe
Q 020005 224 NAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
-..-...-+-..+...|+++.+
T Consensus 189 ~~nnva~Sl~~~~~~lG~~v~~ 210 (365)
T 4amu_A 189 YKNNVGVSTMIGAAFNGMHVVM 210 (365)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCcchHHHHHHHHHHcCCEEEE
Confidence 4111123345567778988765
No 224
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=48.64 E-value=75 Score=27.07 Aligned_cols=78 Identities=18% Similarity=0.029 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeeech----HHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS----ECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
.+.++.++++|+|.|.+..-+.+ .++.++++.+++|++-.. ...++.+.+.|.+ .-.++
T Consensus 36 ~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad---------~V~i~ 106 (253)
T 1h5y_A 36 VEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGAD---------KVSVN 106 (253)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCS---------EEEES
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC---------EEEEC
Confidence 44567889999998877633322 125677788899987432 1233566666653 45666
Q ss_pred chhhhchhhHHHHHHhcCC
Q 020005 223 KNAILTAGFYQEKLQHEGF 241 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi 241 (332)
+...-...++.+..+.+|.
T Consensus 107 ~~~~~~~~~~~~~~~~~g~ 125 (253)
T 1h5y_A 107 TAAVRNPQLVALLAREFGS 125 (253)
T ss_dssp HHHHHCTHHHHHHHHHHCG
T ss_pred hHHhhCcHHHHHHHHHcCC
Confidence 6554445556666666563
No 225
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=48.53 E-value=65 Score=31.19 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=45.3
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.--- .|+.+.+.++ .++|+++-.+...+.+.....+ .|+|-||.| |-.+.+....|+..|.
T Consensus 71 ~~d~vV~spgi~~~~p~~~~a~~-~gi~v~~~~e~l~~~~~~~~~~--------vI~VTGTnGKTTTt~ml~~iL~~~G~ 141 (469)
T 1j6u_A 71 DPDLVIKTPAVRDDNPEIVRARM-ERVPIENRLHYFRDTLKREKKE--------EFAVTGTDGKTTTTAMVAHVLKHLRK 141 (469)
T ss_dssp CCSEEEECTTCCTTCHHHHHHHH-TTCCEEEHHHHHHHHHHHHCCC--------EEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCcCCCCHHHHHHHH-cCCcEEEHHHHHHHHHhccCCC--------EEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 46666554332 3555555554 4899999887766544311222 799999987 3455677888888887
Q ss_pred eE
Q 020005 242 EV 243 (332)
Q Consensus 242 ~v 243 (332)
.+
T Consensus 142 ~~ 143 (469)
T 1j6u_A 142 SP 143 (469)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 226
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=48.22 E-value=17 Score=33.92 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=39.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-------------HHHHhhhCCCCee-----echHHHHHHHHHhcC
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIW-------------HDEVCKGCSVPFL-----HVSECVAKELKEANM 207 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~-------------~d~l~~~~~iPii-----~Ive~t~~~l~~~g~ 207 (332)
+.++.++.|+|+++++--|+|-. +.+|++.+++|++ ++.+..++.+.+.|-
T Consensus 158 a~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg 226 (305)
T 1rvg_A 158 ARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGG 226 (305)
T ss_dssp HHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhcc
Confidence 34566778999999999999964 3467778888887 677777777777654
No 227
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=48.11 E-value=38 Score=32.88 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=46.2
Q ss_pred cCCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.|+|++|+.-.- .|+.+.+.++ .++|+++-.+...+.+.. .+ .|+|-||.| |-.+.+....|+..|
T Consensus 76 ~~a~~vv~s~~i~~~~~~~~~a~~-~~i~vl~~~~~l~~~~~~--~~--------vI~VTGTnGKTTTt~ml~~iL~~~G 144 (475)
T 1p3d_A 76 EGASVVVVSSAIKDDNPELVTSKQ-KRIPVIQRAQMLAEIMRF--RH--------GIAVAGTHGKTTTTAMISMIYTQAK 144 (475)
T ss_dssp TTCSEEEECTTSCTTCHHHHHHHH-TTCCEEEHHHHHHHHHHT--SE--------EEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-cCCcEEEHHHHHHHHhcC--CC--------EEEEECCCCHHHHHHHHHHHHHhCC
Confidence 489988886432 2454444433 489999998876655432 22 799999987 445567788888888
Q ss_pred Ce
Q 020005 241 FE 242 (332)
Q Consensus 241 i~ 242 (332)
..
T Consensus 145 ~~ 146 (475)
T 1p3d_A 145 LD 146 (475)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 228
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=48.03 E-value=26 Score=33.92 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHcCCcEEEEeCCCchhh--HHHHhhh-----CCCCeee
Q 020005 158 RVFLEKAGARCIVMPCHLSHIW--HDEVCKG-----CSVPFLH 193 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~--~d~l~~~-----~~iPii~ 193 (332)
++.|+++|||.+=+++++.-.. +.+|+++ +++|++.
T Consensus 44 I~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~vPLVA 86 (406)
T 4g9p_A 44 VLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVG 86 (406)
T ss_dssp HHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCCCceEe
Confidence 4679999999999999997654 6777765 8899854
No 229
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=47.99 E-value=45 Score=31.20 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCchhh-HHHHhhhCCCCeeec---------------------------hHHHHHHHHHhcCCCCcCCCCc
Q 020005 165 GARCIVMPCHLSHIW-HDEVCKGCSVPFLHV---------------------------SECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 165 Gad~IvI~CNTaH~~-~d~l~~~~~iPii~I---------------------------ve~t~~~l~~~g~k~~~~~~~~ 216 (332)
++.+|+=|..+.... ...+.+..++|+|+. ..+.++.++..+.+
T Consensus 84 ~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~-------- 155 (441)
T 1jdp_A 84 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWS-------- 155 (441)
T ss_dssp CCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCC--------
T ss_pred CceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCc--------
Confidence 777776665543322 344555556666642 23444555555665
Q ss_pred eEEEEechhhhc------hhhHHHHHHhcCCeEEe
Q 020005 217 RIGVLAKNAILT------AGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 217 rVGlLaT~~T~~------s~lY~~~l~~~Gi~vv~ 245 (332)
+|+++..+...- ...+++.+++.|++++.
T Consensus 156 ~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~ 190 (441)
T 1jdp_A 156 RAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSI 190 (441)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEE
Confidence 999999765422 23456777888988753
No 230
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=47.85 E-value=96 Score=27.58 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------------------------hhHHHHhhhC-CCCeeech----------HH
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------------------------IWHDEVCKGC-SVPFLHVS----------EC 197 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------------------------~~~d~l~~~~-~iPii~Iv----------e~ 197 (332)
.+.++.|+++|+|.|-+---... ....++++.+ ++|++-|. +.
T Consensus 34 ~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~ 113 (262)
T 2ekc_A 34 LKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEK 113 (262)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHH
Confidence 34566788899998777432211 1256777777 78877651 23
Q ss_pred HHHHHHHhcCCCCcCCCCceEEEEechhhhc-hhhHHHHHHhcCCeE
Q 020005 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILT-AGFYQEKLQHEGFEV 243 (332)
Q Consensus 198 t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~-s~lY~~~l~~~Gi~v 243 (332)
-++.+.+.|.+ |++--+.+.+ ..-|.+.+.++|+++
T Consensus 114 f~~~~~~aG~d----------gvii~dl~~ee~~~~~~~~~~~gl~~ 150 (262)
T 2ekc_A 114 FCRLSREKGID----------GFIVPDLPPEEAEELKAVMKKYVLSF 150 (262)
T ss_dssp HHHHHHHTTCC----------EEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCC----------EEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 34455666542 3333333322 344666777788764
No 231
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=47.55 E-value=56 Score=30.69 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc---------h----hhHHHHhhhCCCCeeechH----HHHHHHHHhc-CCCCcCCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLS---------H----IWHDEVCKGCSVPFLHVSE----CVAKELKEAN-MKPLEAGSP 215 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTa---------H----~~~d~l~~~~~iPii~Ive----~t~~~l~~~g-~k~~~~~~~ 215 (332)
..+.++.|+++|+|+|-+...+. . .+..++++.+++||+.... ..++++.+.| .
T Consensus 248 ~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~a-------- 319 (363)
T 3l5l_A 248 SIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQL-------- 319 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSC--------
T ss_pred HHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCc--------
Confidence 45567889999999999886321 1 1356777888888886632 3344445544 2
Q ss_pred ceEEEEechhhhchhhHHHHHHhcCC
Q 020005 216 LRIGVLAKNAILTAGFYQEKLQHEGF 241 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~l~~~Gi 241 (332)
-...+|+.......+..+..+..|+
T Consensus 320 -D~V~iGR~~lanPdl~~k~~~~lg~ 344 (363)
T 3l5l_A 320 -DLVSVGRAHLADPHWAYFAAKELGV 344 (363)
T ss_dssp -SEEECCHHHHHCTTHHHHHHHHTTC
T ss_pred -cEEEecHHHHhCchHHHHHHHHcCC
Confidence 2445666666666666666655564
No 232
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=47.24 E-value=46 Score=30.70 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHHHHHcCCcEEEEeCC------Cchh-hHHHHhhhCCCCeeechHH-----------------HHHHHHHhcCCCCcC
Q 020005 157 KRVFLEKAGARCIVMPCH------LSHI-WHDEVCKGCSVPFLHVSEC-----------------VAKELKEANMKPLEA 212 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CN------TaH~-~~d~l~~~~~iPii~Ive~-----------------t~~~l~~~g~k~~~~ 212 (332)
.+...++.|||-|=++.| |..+ ++..+++.+++|+.-|+.+ -++.+++.|.+
T Consensus 51 ~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAd---- 126 (287)
T 3iwp_A 51 SAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGAD---- 126 (287)
T ss_dssp HHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS----
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCC----
Confidence 344567899999999988 2333 4788888889998877542 44566777654
Q ss_pred CCCceEEEEechhhhchhhHHHHHHhc-CCeEEe
Q 020005 213 GSPLRIGVLAKNAILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 213 ~~~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
.--+|.|..++++....-++.++.. ++.+..
T Consensus 127 --GvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTF 158 (287)
T 3iwp_A 127 --GLVFGALTEDGHIDKELCMSLMAICRPLPVTF 158 (287)
T ss_dssp --EEEECCBCTTSCBCHHHHHHHHHHHTTSCEEE
T ss_pred --EEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEE
Confidence 2256777789999888778877765 455543
No 233
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=46.67 E-value=94 Score=28.86 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++. +++. |. -.+.+|+++|-
T Consensus 91 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 163 (315)
T 1pvv_A 91 IADTARVLSRY-VDAIMARVYD-HKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGT-----IKGVKVVYVGD 163 (315)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CcEEEEecCc-hHHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45666778887 7999998874 88889999999999999744 22211 2222 21 13458999997
Q ss_pred h-hhhchhhHHHHHHhcCCeEEe
Q 020005 224 N-AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~-~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
- .+.. -+-..+...|+++.+
T Consensus 164 ~~rva~--Sl~~~~~~~g~~v~~ 184 (315)
T 1pvv_A 164 GNNVAH--SLMIAGTKLGADVVV 184 (315)
T ss_dssp CCHHHH--HHHHHHHHTTCEEEE
T ss_pred CcchHH--HHHHHHHHCCCEEEE
Confidence 3 3333 334556777988865
No 234
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=46.52 E-value=85 Score=26.05 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCC-CchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDR-SSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGA 166 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~-~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Ga 166 (332)
|.+...+..++.++.+....+..+.+|++. .|. |.... .....+.++..+.+.+.++.+.+.|+
T Consensus 50 g~~G~~~~~~~~~~~~~~~~~~~pd~vvi~----------~G~ND~~~~-----~~~~~~~~~~~~~l~~~i~~~~~~~~ 114 (240)
T 3mil_A 50 GFKGYTSRWALKILPEILKHESNIVMATIF----------LGANDACSA-----GPQSVPLPEFIDNIRQMVSLMKSYHI 114 (240)
T ss_dssp ECTTCCHHHHHHHHHHHHHHCCCEEEEEEE----------CCTTTTSSS-----STTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCcccHHHHHHHHHHHhcccCCCCEEEEE----------eecCcCCcc-----CCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 666666666776665544332356666655 111 11100 00123556778888888999999999
Q ss_pred cEEEEeC
Q 020005 167 RCIVMPC 173 (332)
Q Consensus 167 d~IvI~C 173 (332)
.++++..
T Consensus 115 ~vil~~~ 121 (240)
T 3mil_A 115 RPIIIGP 121 (240)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 8888764
No 235
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=46.46 E-value=1.2e+02 Score=26.08 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=16.6
Q ss_pred HHHHhhhCCCCeeech----------HHHHHHHHHhcCC
Q 020005 180 HDEVCKGCSVPFLHVS----------ECVAKELKEANMK 208 (332)
Q Consensus 180 ~d~l~~~~~iPii~Iv----------e~t~~~l~~~g~k 208 (332)
..++++.+++|+.=|. +..++.+.+.|.+
T Consensus 72 i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad 110 (248)
T 1geq_A 72 VKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVD 110 (248)
T ss_dssp HHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCC
Confidence 5666666777755553 2344555566653
No 236
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=46.39 E-value=55 Score=31.36 Aligned_cols=94 Identities=20% Similarity=0.097 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhh------------------hCCCCeeec-------hHHHHHHHH
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCK------------------GCSVPFLHV-------SECVAKELK 203 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~-~d~l~~------------------~~~iPii~I-------ve~t~~~l~ 203 (332)
+.......++.|++.|+++++++--|.-+. .|++.+ ...+|++-+ ++..++.+.
T Consensus 66 Ll~~a~~Ia~~L~~~~~e~~IlgDttYGACCVDe~aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~ 145 (378)
T 3lzd_A 66 LRREAEELAGFLEENNIEVFLHGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENI 145 (378)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECSCCCCTTSCCHHHHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCceEEEEcCCcccCcccCHHHHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHH
Confidence 444444556677778888888854443332 333222 224666554 233444443
Q ss_pred HhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCCeEEecCc
Q 020005 204 EANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGFEVVLPDK 248 (332)
Q Consensus 204 ~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi~vv~P~~ 248 (332)
+. ++ ....+|+|++|-. .-.-.-..+.|++.|.++++|..
T Consensus 146 ~~-~~----~~~~~i~L~~tiq~~~~l~~~~~~L~~~g~~v~i~~~ 186 (378)
T 3lzd_A 146 GE-IK----KLGRKIIVTTTAQHIHQLKEAKEFLESEGFEVSIGRG 186 (378)
T ss_dssp HH-HH----TTCSEEEEEECGGGGGGHHHHHHHHHHTTCEEECCCC
T ss_pred Hh-cc----CcCCeEEEEEcHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 32 11 0124899999843 22233345678888999887643
No 237
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=45.78 E-value=1.9e+02 Score=26.90 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=61.8
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCE-EEecCCcc--hhhhh-hcCCCchhhccccCCCCCCCH-HHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPF-LLCSDPLL--NKELL-SHDRSSFSSLNCKGGGVQLDD-SLIVEN 153 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~-vi~s~p~i--p~~ll-~~~~~~~~~~~~~~~~~~~d~-~~i~~~ 153 (332)
.|++|.++-|.-|.. -.+.-+++...++..+.+ ++..-.+. -+.++ ..+..|-..+.-. ...... ..+...
T Consensus 24 ~m~ki~~v~Gtr~~~--~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~--~~~~~~~~~~~~~ 99 (396)
T 3dzc_A 24 AMKKVLIVFGTRPEA--IKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIM--EPGQTLNGVTSKI 99 (396)
T ss_dssp CCEEEEEEECSHHHH--HHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCC--CTTCCHHHHHHHH
T ss_pred CCCeEEEEEeccHhH--HHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCceeeecC--CCCCCHHHHHHHH
Confidence 467899997777764 334556655554423444 44443332 22221 2222221111100 011222 244555
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHH-HhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDE-VCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~-l~~~~~iPii~I 194 (332)
+.+..+.|++...|++++-..+...+.-. .....+||++|+
T Consensus 100 ~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~ 141 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHV 141 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEE
Confidence 66667888899999999988777766423 334568999986
No 238
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=45.77 E-value=28 Score=32.10 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWH 180 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~ 180 (332)
+.++.++.|+|+++++--|+|-.|
T Consensus 164 a~~Fv~~TgvD~LAvaiGt~HG~Y 187 (288)
T 3q94_A 164 CKHLVEATGIDCLAPALGSVHGPY 187 (288)
T ss_dssp HHHHHHHHCCSEEEECSSCBSSCC
T ss_pred HHHHHHHHCCCEEEEEcCcccCCc
Confidence 345677889999999999999765
No 239
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=45.48 E-value=1.7e+02 Score=27.02 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=.. .|..++++.+.+++||||... +.++. +++. |. -.+.+|+++|-
T Consensus 84 l~DTarvls~~-~D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 156 (307)
T 2i6u_A 84 LQDTAKVLSRY-VDAIVWRTF-GQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAERKGA-----LRGLRLSYFGD 156 (307)
T ss_dssp HHHHHHHHHHH-EEEEEEECS-SHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecC-ChhHHHHHHhhCCCCEEcCCCCCcCccHHHHHHHHHHHHhCC-----cCCeEEEEECC
Confidence 45666778888 799999887 488889999999999999743 12211 2222 21 13458999997
Q ss_pred h--hhhchhhHHHHHHhcCCeEEecC
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
- .+..| +-..+...|+++.+-.
T Consensus 157 ~~~rva~S--l~~~~~~~g~~v~~~~ 180 (307)
T 2i6u_A 157 GANNMAHS--LLLGGVTAGIHVTVAA 180 (307)
T ss_dssp TTSHHHHH--HHHHHHHTTCEEEEEC
T ss_pred CCcCcHHH--HHHHHHHCCCEEEEEC
Confidence 3 33333 3345677798887633
No 240
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=44.90 E-value=53 Score=30.90 Aligned_cols=43 Identities=9% Similarity=0.299 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHH---HHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK---LQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~---l~~~Gi~vv~ 245 (332)
++...+.+++.|.+ |+.|++-+...+.+++++. |++.|+++..
T Consensus 19 ~~~l~~~l~~~g~~--------~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~ 64 (386)
T 1rrm_A 19 VGALTDEVKRRGYQ--------KALIVTDKTLVQCGVVAKVTDKMDAAGLAWAI 64 (386)
T ss_dssp GGGHHHHHHHHTCC--------EEEEECBHHHHHTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCC--------EEEEEECcchhhchHHHHHHHHHHHcCCeEEE
Confidence 44455556655543 8888887777666666544 5566888753
No 241
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=44.55 E-value=29 Score=33.04 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=13.0
Q ss_pred cCeEEEEeCCChHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLV 102 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~ 102 (332)
||+|+|+|| |+ .+..+.+.+.
T Consensus 2 ~k~ilI~g~-g~-~~~~~~~a~~ 22 (449)
T 2w70_A 2 LDKIVIANR-GE-IALRILRACK 22 (449)
T ss_dssp CSEEEECCC-HH-HHHHHHHHHH
T ss_pred CceEEEeCC-cH-HHHHHHHHHH
Confidence 689999975 54 3444444443
No 242
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=43.97 E-value=1.1e+02 Score=28.46 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhC-CCCeeechH--------HHHHH--HHHh-cCCCCcCCCCceEEE
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPFLHVSE--------CVAKE--LKEA-NMKPLEAGSPLRIGV 220 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~-~iPii~Ive--------~t~~~--l~~~-g~k~~~~~~~~rVGl 220 (332)
.+.+.++-|.+. +|+|+|=... |...+++.+.+ ++||||..+ +.++. +++. |. -.+.+|++
T Consensus 87 sl~DTarvls~~-~D~iviR~~~-~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~ 159 (310)
T 3csu_A 87 TLADTISVISTY-VDAIVMRHPQ-EGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGR-----LDNLHVAM 159 (310)
T ss_dssp HHHHHHHHHTTT-CSEEEEEESS-TTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSC-----SSSCEEEE
T ss_pred cHHHHHHHHHHh-CCEEEEECCC-hhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCC-----cCCcEEEE
Confidence 355667778877 7999998774 77789999999 999999865 12111 2222 21 13458999
Q ss_pred Eech---hhhchhhHHHHHHhc-CCeEEecCc
Q 020005 221 LAKN---AILTAGFYQEKLQHE-GFEVVLPDK 248 (332)
Q Consensus 221 LaT~---~T~~s~lY~~~l~~~-Gi~vv~P~~ 248 (332)
+|-- .+.. -+-..+... |+++.+..+
T Consensus 160 vGD~~~~rva~--Sl~~~~~~~~g~~v~~~~P 189 (310)
T 3csu_A 160 VGDLKYGRTVH--SLTQALAKFDGNRFYFIAP 189 (310)
T ss_dssp ESCTTTCHHHH--HHHHHHHTSSSCEEEEECC
T ss_pred ECCCCCCchHH--HHHHHHHhCCCCEEEEECC
Confidence 9963 3333 344567778 988876433
No 243
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=43.84 E-value=2.4e+02 Score=27.66 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch-----hhHHHHhhhCC-CCeee---chHHHHHHHHHhcCCCCcCCCCceEEE-----
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH-----IWHDEVCKGCS-VPFLH---VSECVAKELKEANMKPLEAGSPLRIGV----- 220 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH-----~~~d~l~~~~~-iPii~---Ive~t~~~l~~~g~k~~~~~~~~rVGl----- 220 (332)
.+.++.|.++|+|+|++-+...| .++.++++.++ +|++- ...+.++.+.+.|.+ -|-+
T Consensus 258 ~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad--------~i~vg~g~g 329 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGAN--------VVKVGIGPG 329 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCS--------EEEECSSCS
T ss_pred HHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCC--------EEEECCCCc
Q ss_pred ----------EechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEE
Q 020005 221 ----------LAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVI 290 (332)
Q Consensus 221 ----------LaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VI 290 (332)
++.+..-.-.--.+.+.+.++.++. .|.+....+..+ ..+.|||+|+
T Consensus 330 si~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa------------------~GGI~~~~di~k-----ala~GA~~V~ 386 (511)
T 3usb_A 330 SICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIA------------------DGGIKYSGDMVK-----ALAAGAHVVM 386 (511)
T ss_dssp TTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEE------------------ESCCCSHHHHHH-----HHHTTCSEEE
T ss_pred cccccccccCCCCCcHHHHHHHHHHHHhCCCcEEE------------------eCCCCCHHHHHH-----HHHhCchhhe
Q ss_pred EC
Q 020005 291 LA 292 (332)
Q Consensus 291 LG 292 (332)
+|
T Consensus 387 vG 388 (511)
T 3usb_A 387 LG 388 (511)
T ss_dssp ES
T ss_pred ec
No 244
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=43.02 E-value=42 Score=32.72 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=45.5
Q ss_pred cCCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcC
Q 020005 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEG 240 (332)
Q Consensus 164 ~Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~G 240 (332)
.|+|++|+.-.- .|+.+.+.++ .++|+++-.+...+.+.. . +.|+|-||.| |-.+.+....|+..|
T Consensus 77 ~~a~~vv~s~~i~~~~p~~~~a~~-~~ipvl~~~~~l~~~~~~--~--------~vI~VTGTnGKTTTt~ml~~iL~~~G 145 (491)
T 2f00_A 77 RDASVVVVSSAISADNPEIVAAHE-ARIPVIRRAEMLAELMRF--R--------HGIAIAGTHGKTTTTAMVSSIYAEAG 145 (491)
T ss_dssp TTCSEEEECTTCCTTCHHHHHHHH-TTCCEEEHHHHHHHHHTT--S--------EEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-cCCcEEEHHHHHHHHHcC--C--------CEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 489988886432 1454444433 489999998866554321 1 2799999987 445567788888888
Q ss_pred Ce
Q 020005 241 FE 242 (332)
Q Consensus 241 i~ 242 (332)
..
T Consensus 146 ~~ 147 (491)
T 2f00_A 146 LD 147 (491)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 245
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=42.91 E-value=2.1e+02 Score=27.02 Aligned_cols=85 Identities=11% Similarity=0.045 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|++=.. .|..++++.+.+++||||... +.+.. +++. |. -.+.+|+++|-
T Consensus 112 l~DTarvLs~~-~D~IviR~~-~~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E~~g~-----l~gl~va~vGD 184 (359)
T 2w37_A 112 TSDTAKVLGSM-FDGIEFRGF-KQSDAEILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGK-----LQGLTLTFMGD 184 (359)
T ss_dssp HHHHHHHHHHH-CSEEEEESS-CHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-cCEEEEecC-ChHHHHHHHHhCCCCEEcCCCCCCCccHHHHHHHHHHHHhCC-----cCCeEEEEECC
Confidence 45666778888 799999987 488889999999999999743 22211 2222 21 13458999997
Q ss_pred h--hhhchhhHHHHHHhcCCeEEecC
Q 020005 224 N--AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 224 ~--~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
- .+..| +-..+...|+++.+..
T Consensus 185 ~~~rva~S--l~~~~~~lG~~v~~~~ 208 (359)
T 2w37_A 185 GRNNVANS--LLVTGAILGVNIHIVA 208 (359)
T ss_dssp TTSHHHHH--HHHHHHHHTCEEEEEC
T ss_pred CccchHHH--HHHHHHHcCCEEEEEC
Confidence 3 33333 3344666798887633
No 246
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=42.57 E-value=42 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=25.5
Q ss_pred ceEEEEechhhhchhhHHHHHHhcCCeEEecCc
Q 020005 216 LRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDK 248 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~ 248 (332)
++|+|+|+ |||-+++ ...+...|++|++-|.
T Consensus 7 ~~VaViGa-G~MG~gi-A~~~a~~G~~V~l~D~ 37 (319)
T 3ado_A 7 GDVLIVGS-GLVGRSW-AMLFASGGFRVKLYDI 37 (319)
T ss_dssp CEEEEECC-SHHHHHH-HHHHHHTTCCEEEECS
T ss_pred CeEEEECC-cHHHHHH-HHHHHhCCCeEEEEEC
Confidence 48999999 9999884 5667888999987554
No 247
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=42.40 E-value=2.1e+02 Score=26.56 Aligned_cols=79 Identities=14% Similarity=0.025 Sum_probs=43.6
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh------------HHHHhhhCCCCeeech--------HHHHHHHHHhcCCCCcCCCCc
Q 020005 158 RVFLE-KAGARCIVMPCHLSHIW------------HDEVCKGCSVPFLHVS--------ECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 158 ~~~Le-~~Gad~IvI~CNTaH~~------------~d~l~~~~~iPii~Iv--------e~t~~~l~~~g~k~~~~~~~~ 216 (332)
++... +.|||+|-|.+-...+- .+.+++.+++|+ +|- ..+++++.+.+.. .
T Consensus 86 A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPl-sIDg~~~~T~~~eV~eaAleagag-------~ 157 (323)
T 4djd_D 86 AQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPL-VVVGCGDVEKDHEVLEAVAEAAAG-------E 157 (323)
T ss_dssp HHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCE-EEECCSCHHHHHHHHHHHHHHTTT-------S
T ss_pred HHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceE-EEECCCCCCCCHHHHHHHHHhcCC-------C
Confidence 34444 89999999976544542 567777888884 433 2455555554421 1
Q ss_pred eEEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
+--|-+..+---... -....++|..++.
T Consensus 158 ~~lINsv~~~~~~~m-~~laa~~g~~vVl 185 (323)
T 4djd_D 158 NLLLGNAEQENYKSL-TAACMVHKHNIIA 185 (323)
T ss_dssp CCEEEEEBTTBCHHH-HHHHHHHTCEEEE
T ss_pred CCeEEECCcccHHHH-HHHHHHhCCeEEE
Confidence 222333322211122 2345677888877
No 248
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=42.27 E-value=1.4e+02 Score=24.28 Aligned_cols=28 Identities=4% Similarity=0.039 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeC
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPC 173 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~C 173 (332)
..++..+.+.+.++.+.+.+.+..+|-|
T Consensus 90 ~~~~~~~~l~~ii~~l~~~~p~~~ii~~ 117 (200)
T 4h08_A 90 TEEEYDKSFPKLIKIIRKYAPKAKLIWA 117 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhhCCCccEEEe
Confidence 4456777788888889888877644433
No 249
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=42.21 E-value=51 Score=29.32 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHcCCcEEEEeCC------Cchhh-HHHHh---hhCCCCeeechHH-----------------HHHHHHHhcCCCCcCCC
Q 020005 162 EKAGARCIVMPCH------LSHIW-HDEVC---KGCSVPFLHVSEC-----------------VAKELKEANMKPLEAGS 214 (332)
Q Consensus 162 e~~Gad~IvI~CN------TaH~~-~d~l~---~~~~iPii~Ive~-----------------t~~~l~~~g~k~~~~~~ 214 (332)
++.|||-|=+|+| |..+- +..++ +.+++||.=|+.+ -++.+++.|.+..
T Consensus 18 ~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGv---- 93 (224)
T 2bdq_A 18 DKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDAL---- 93 (224)
T ss_dssp CTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEE----
T ss_pred HHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEE----
Q ss_pred CceEEEEechhhhchhhHHHHHHhc-CCeEEecCccchhhchHHHHHHH--hcCChHHHHHHHHHHHHHHHhCCCCEEE
Q 020005 215 PLRIGVLAKNAILTAGFYQEKLQHE-GFEVVLPDKATMEHTLIPALDAL--NRKDVEGARNLLRIALQVLLVRAVNTVI 290 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~~~l~~~-Gi~vv~P~~~~q~~~l~~~i~~i--k~g~~~~a~~~l~~~~~~L~~~gad~VI 290 (332)
-+|+|..++++....-++.++.. |+++.. |.- ++.+ .. ..++++.|.+.|++.|.
T Consensus 94 --V~G~Lt~dg~iD~~~~~~Li~~a~~~~vTF-------HRA---FD~~~~~d---------~~~ale~L~~lGv~rIL 151 (224)
T 2bdq_A 94 --VLGILTSNNHIDTEAIEQLLPATQGLPLVF-------HMA---FDVIPKSD---------QKKSIDQLVALGFTRIL 151 (224)
T ss_dssp --EECCBCTTSSBCHHHHHHHHHHHTTCCEEE-------CGG---GGGSCTTT---------HHHHHHHHHHTTCCEEE
T ss_pred --EEeeECCCCCcCHHHHHHHHHHhCCCeEEE-------ECc---hhccCCcC---------HHHHHHHHHHcCCCEEE
No 250
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=42.13 E-value=1.1e+02 Score=25.03 Aligned_cols=92 Identities=13% Similarity=-0.053 Sum_probs=50.4
Q ss_pred chhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEec-CCcch-hhhhhcC-CCchhhccccCCCCCCCHHH
Q 020005 74 DALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCS-DPLLN-KELLSHD-RSSFSSLNCKGGGVQLDDSL 149 (332)
Q Consensus 74 ~~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s-~p~ip-~~ll~~~-~~~~~~~~~~~~~~~~d~~~ 149 (332)
...+...++|-++| |.+..++.+|..++... ..++...+ ++... ..+..-+ .|.+-.. ...+.-.+
T Consensus 33 ~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~-----g~~~~~~~~~~~~~~~~~~~~~~~d~~i~i-----S~sG~t~~ 102 (187)
T 3sho_A 33 VEAICRADHVIVVGMGFSAAVAVFLGHGLNSL-----GIRTTVLTEGGSTLTITLANLRPTDLMIGV-----SVWRYLRD 102 (187)
T ss_dssp HHHHHHCSEEEEECCGGGHHHHHHHHHHHHHT-----TCCEEEECCCTHHHHHHHHTCCTTEEEEEE-----CCSSCCHH
T ss_pred HHHHHhCCEEEEEecCchHHHHHHHHHHHHhc-----CCCEEEecCCchhHHHHHhcCCCCCEEEEE-----eCCCCCHH
Confidence 34566678999998 77777777777777542 24444444 33321 1111111 1111111 01112222
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
+.+.++.+++.|+..|+|.+|.-.+.
T Consensus 103 ----~~~~~~~ak~~g~~vi~IT~~~~s~l 128 (187)
T 3sho_A 103 ----TVAALAGAAERGVPTMALTDSSVSPP 128 (187)
T ss_dssp ----HHHHHHHHHHTTCCEEEEESCTTSHH
T ss_pred ----HHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence 34456678889999999999875543
No 251
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=41.47 E-value=65 Score=30.29 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhhch--hhHHHH---HHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA--GFYQEK---LQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s--~lY~~~---l~~~Gi~vv~ 245 (332)
++...+.+++.|.+ |+.|+.-+...+. +++++. |++.|++++.
T Consensus 21 ~~~l~~~l~~~g~~--------~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~ 68 (387)
T 3bfj_A 21 ISVVGERCQLLGGK--------KALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAI 68 (387)
T ss_dssp GGGHHHHHHHTTCS--------EEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCC--------EEEEEECcchhhccchHHHHHHHHHHHcCCeEEE
Confidence 34455556655433 8988887777666 566644 5667888743
No 252
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=41.13 E-value=29 Score=32.87 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=20.5
Q ss_pred ceEEEEechhhhchhhHHHH---HHhcCCeEE
Q 020005 216 LRIGVLAKNAILTAGFYQEK---LQHEGFEVV 244 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~---l~~~Gi~vv 244 (332)
+|+.|++-+...+.+++++. |++.|+++.
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~ 63 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSA 63 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEE
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEE
Confidence 38888888776666666544 666788774
No 253
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=40.81 E-value=87 Score=28.08 Aligned_cols=58 Identities=14% Similarity=0.415 Sum_probs=32.8
Q ss_pred CceEEEEechhhhchhhHH-------HHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCC
Q 020005 215 PLRIGVLAKNAILTAGFYQ-------EKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVN 287 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~-------~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad 287 (332)
.++||++-.. +...+|. +.++++|+.+++-..... +...+.++.+..+++|
T Consensus 64 ~~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~--------------------~~~~~~~~~l~~~~vd 121 (333)
T 3jvd_A 64 SALVGVIVPD--LSNEYYSESLQTIQQDLKAAGYQMLVAEANSV--------------------QAQDVVMESLISIQAA 121 (333)
T ss_dssp CCEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECCSH--------------------HHHHHHHHHHHHHTCS
T ss_pred CCEEEEEeCC--CcChHHHHHHHHHHHHHHHCCCEEEEECCCCh--------------------HHHHHHHHHHHhCCCC
Confidence 4579998764 2334443 345556877765211100 1112334456667899
Q ss_pred EEEECCC
Q 020005 288 TVILASD 294 (332)
Q Consensus 288 ~VILGCT 294 (332)
.||+..+
T Consensus 122 GiIi~~~ 128 (333)
T 3jvd_A 122 GIIHVPV 128 (333)
T ss_dssp EEEECCC
T ss_pred EEEEcch
Confidence 9999876
No 254
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=39.60 E-value=1.5e+02 Score=25.17 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=29.9
Q ss_pred HHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCeeech----HHHHHHHHHhcC
Q 020005 157 KRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFLHVS----ECVAKELKEANM 207 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~ 207 (332)
.++.+++.|+|.|.+-.-+. ..++.++++.+++|++-.. ..-+..+.+.|.
T Consensus 159 ~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga 221 (253)
T 1h5y_A 159 WAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGA 221 (253)
T ss_dssp HHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 34567889999987643221 1246777777788887322 133344445554
No 255
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=39.47 E-value=1.4e+02 Score=26.65 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCcEEEEe
Q 020005 156 RKRVFLEKAGARCIVMP 172 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~ 172 (332)
+.++.++++|+|.|.+.
T Consensus 180 ~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 180 PIAKAVEAAGADGLTMI 196 (311)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 44677899999999984
No 256
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=39.31 E-value=2e+02 Score=25.42 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=36.0
Q ss_pred ceEEEEechhh-hchhhHHHHHHhcCCeEEec---CccchhhchHHHHHHHhcCChH-----HHHHHHHHHHHHHHhCCC
Q 020005 216 LRIGVLAKNAI-LTAGFYQEKLQHEGFEVVLP---DKATMEHTLIPALDALNRKDVE-----GARNLLRIALQVLLVRAV 286 (332)
Q Consensus 216 ~rVGlLaT~~T-~~s~lY~~~l~~~Gi~vv~P---~~~~q~~~l~~~i~~ik~g~~~-----~a~~~l~~~~~~L~~~ga 286 (332)
+++.++....+ ...++.+...+..|.+++.- .....+ +...+..+++.+.+ ........+++.+.+.|.
T Consensus 144 ~~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d--~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~ 221 (353)
T 4gnr_A 144 KKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTD--FQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGI 221 (353)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCC--CHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCC--HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 35666654432 23344444445567776531 111111 33345566654321 111223344555666777
Q ss_pred CEEEECCC
Q 020005 287 NTVILASD 294 (332)
Q Consensus 287 d~VILGCT 294 (332)
+.-+++..
T Consensus 222 ~~~~~~~~ 229 (353)
T 4gnr_A 222 DKPIVGGD 229 (353)
T ss_dssp CSCEEECG
T ss_pred CCcEEEec
Confidence 66666654
No 257
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=39.26 E-value=73 Score=25.44 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=42.4
Q ss_pred EEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHH
Q 020005 83 VGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (332)
Q Consensus 83 IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (332)
+-++. |.+...+.+++.++-+..... ++.+|++.- -..|.. ...+.++..+.+.+.++.+
T Consensus 39 ~~v~n~g~~G~~~~~~~~~~~~~~~~~-~pd~vvi~~-G~ND~~-----------------~~~~~~~~~~~~~~~i~~~ 99 (185)
T 3hp4_A 39 IVLINASISGETSGGALRRLDALLEQY-EPTHVLIEL-GANDGL-----------------RGFPVKKMQTNLTALVKKS 99 (185)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHH-CCSEEEEEC-CHHHHH-----------------TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcCCccHHHHHHHHHHHHhhc-CCCEEEEEe-ecccCC-----------------CCcCHHHHHHHHHHHHHHH
Confidence 44443 565556666666665443321 566776651 112211 0124566777888888999
Q ss_pred HHcCCcEEEEeC
Q 020005 162 EKAGARCIVMPC 173 (332)
Q Consensus 162 e~~Gad~IvI~C 173 (332)
.+.|+..+++..
T Consensus 100 ~~~~~~vvl~~~ 111 (185)
T 3hp4_A 100 QAANAMTALMEI 111 (185)
T ss_dssp HHTTCEEEEECC
T ss_pred HHcCCeEEEEeC
Confidence 999999888743
No 258
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=39.14 E-value=96 Score=27.63 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=19.9
Q ss_pred CCceEEEEechhhhchhhHH-------HHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKNAILTAGFYQ-------EKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~-------~~l~~~Gi~vv~ 245 (332)
+.++||++-....+...+|. +.++++|+++++
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 98 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL 98 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence 34689999875324444543 445667888765
No 259
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=38.75 E-value=84 Score=29.83 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCCCcCCCCceEEEEechhhh-chhhHHH---HHHhcCCeEEe
Q 020005 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQE---KLQHEGFEVVL 245 (332)
Q Consensus 195 ve~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~-~s~lY~~---~l~~~Gi~vv~ 245 (332)
++...+.+++.|.+ |+.|+....++ +.+++++ .|++.|+++.+
T Consensus 31 l~~l~~~l~~~g~~--------r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~ 77 (407)
T 1vlj_A 31 IPKIGEEIKNAGIR--------KVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVE 77 (407)
T ss_dssp GGGHHHHHHHTTCC--------EEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCC--------eEEEEECchHHhhccHHHHHHHHHHHcCCeEEE
Confidence 44455556655533 89888874444 4456654 45666888754
No 260
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=38.56 E-value=2.3e+02 Score=26.70 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcC-CCCcCCCCceEEEEech
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANM-KPLEAGSPLRIGVLAKN 224 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~-k~~~~~~~~rVGlLaT~ 224 (332)
+.++-++.|.+.+-...++|||+|+ |+.-+.--...|+ +.+-+.|+ . .|.||+=.
T Consensus 153 ~ND~Tl~~Lak~Als~A~AGAdiVA-PSdMMDGrV~aIR---------------~aLd~~G~~~--------~v~ImsYs 208 (342)
T 1h7n_A 153 NRERSVSRLAAVAVNYAKAGAHCVA-PSDMIDGRIRDIK---------------RGLINANLAH--------KTFVLSYA 208 (342)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEE-ECCCCTTHHHHHH---------------HHHHHTTCTT--------TCEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeee-cccccccHHHHHH---------------HHHHHCCCcc--------CceEeech
Confidence 5667778888888888999999654 7776665544443 34556666 3 79999987
Q ss_pred hhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 225 AILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 225 ~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
.-..|.||.-.-...|=..-..|...-+ + +....++.++++...+ ++|||.|+.
T Consensus 209 aKyASafYGPFRdAa~Sap~~GDRktYQ--m----------dpaN~~EAlre~~~Di-~EGAD~vMV 262 (342)
T 1h7n_A 209 AKFSGNLYGPFRDAACSAPSNGDRKCYQ--L----------PPAGRGLARRALERDM-SEGADGIIV 262 (342)
T ss_dssp EEBCSSCCHHHHHHHTCCCSSSCSTTTS--B----------CTTCHHHHHHHHHHHH-HTTCSEEEE
T ss_pred HHHhHHhhHHHHHHHhcCCCCCCccccC--C----------CCCCHHHHHHHHHhhH-HhCCCeEEE
Confidence 7788888875433333221111111100 0 1122455666665554 479997765
No 261
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=38.10 E-value=1.7e+02 Score=25.00 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh---hHHHHhhhCCCC-----eeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~---~~d~l~~~~~iP-----ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.++.|.+.|..++++..|+... +.+.++ ..+++ ++.-..++...+++... .+++.++|+.+
T Consensus 23 ~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~-~lg~~~~~~~i~~~~~~~~~~l~~~~~-------~~~v~viG~~~- 93 (263)
T 1zjj_A 23 RELIEFLKERGIPFAFLTNNSTKTPEMYREKLL-KMGIDVSSSIIITSGLATRLYMSKHLD-------PGKIFVIGGEG- 93 (263)
T ss_dssp HHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHH-TTTCCCCGGGEEEHHHHHHHHHHHHSC-------CCCEEEESCHH-
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH-HCCCCCChhhEEecHHHHHHHHHHhCC-------CCEEEEEcCHH-
Confidence 345667888999888887776433 345554 34554 67767777777776521 23799999853
Q ss_pred hchhhHHHHHHhcCCeEEe
Q 020005 227 LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~vv~ 245 (332)
..+.++++|++++.
T Consensus 94 -----l~~~l~~~G~~~~~ 107 (263)
T 1zjj_A 94 -----LVKEMQALGWGIVT 107 (263)
T ss_dssp -----HHHHHHHHTSCBCC
T ss_pred -----HHHHHHHcCCeecc
Confidence 24567778887643
No 262
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=37.97 E-value=90 Score=27.20 Aligned_cols=62 Identities=6% Similarity=0.101 Sum_probs=34.4
Q ss_pred CceEEEEechhh--hch-hh---HHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCE
Q 020005 215 PLRIGVLAKNAI--LTA-GF---YQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNT 288 (332)
Q Consensus 215 ~~rVGlLaT~~T--~~s-~l---Y~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~ 288 (332)
+++||++-...+ .-. .+ .++.++++|+.+++-... ++. +...+.++.+.++++|+
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---------------~~~----~~~~~~~~~l~~~~vdG 73 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG---------------GSS----EREVEIWKMFQSHRIDG 73 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT---------------TCH----HHHHHHHHHHHHTTCSE
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC---------------CCh----HHHHHHHHHHHhCCCCE
Confidence 458999876432 111 22 245567778887652211 011 11133445667789999
Q ss_pred EEECCCC
Q 020005 289 VILASDD 295 (332)
Q Consensus 289 VILGCTE 295 (332)
||+..+.
T Consensus 74 iIi~~~~ 80 (301)
T 3miz_A 74 VLYVTMY 80 (301)
T ss_dssp EEEEEEE
T ss_pred EEEecCC
Confidence 9987654
No 263
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=37.72 E-value=49 Score=31.11 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=22.6
Q ss_pred HHHcCCcEEEEeCCC-chhh--HHHHhhhCC----CCeeechHHH
Q 020005 161 LEKAGARCIVMPCHL-SHIW--HDEVCKGCS----VPFLHVSECV 198 (332)
Q Consensus 161 Le~~Gad~IvI~CNT-aH~~--~d~l~~~~~----iPii~Ive~t 198 (332)
|++..+|+++|++-+ .|.- ...+++..+ -|+-.-.+++
T Consensus 92 l~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea 136 (412)
T 4gqa_A 92 VNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQA 136 (412)
T ss_dssp HHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHH
T ss_pred hcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHH
Confidence 556789999999865 4432 455655433 3554444443
No 264
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=37.38 E-value=1.5e+02 Score=28.54 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
+.+.++.++++|+|.|+ ..||
T Consensus 285 i~~iA~~a~~aGaDgIi-v~Nt 305 (415)
T 3i65_A 285 KKEIADVLLETNIDGMI-ISNT 305 (415)
T ss_dssp HHHHHHHHHHHTCSEEE-ECCC
T ss_pred HHHHHHHHHHcCCcEEE-EeCC
Confidence 45667889999999886 4555
No 265
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=36.82 E-value=2e+02 Score=31.87 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHcCCcEEEEeCCCch--hhHHHHhhhCCCCeeechHHHHH
Q 020005 159 VFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHVSECVAK 200 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH--~~~d~l~~~~~iPii~Ive~t~~ 200 (332)
+..++.|+|+|+..+.... ..+.+..+..++|+++--..+++
T Consensus 97 ~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~ 140 (1236)
T 3va7_A 97 NAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIR 140 (1236)
T ss_dssp HHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHH
T ss_pred HHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHH
Confidence 3456789998765543222 22445555678999876555443
No 266
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=36.60 E-value=1.6e+02 Score=27.60 Aligned_cols=110 Identities=10% Similarity=0.000 Sum_probs=59.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCC-CCCEE-EecCCc--chhh-hhhcCCCchhhccccCCCCCCCHH-HHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLLGKLVQLSGEEN-DFPFL-LCSDPL--LNKE-LLSHDRSSFSSLNCKGGGVQLDDS-LIVENLR 155 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y~kI~~~t~~d~-~~~~v-i~s~p~--ip~~-ll~~~~~~~~~~~~~~~~~~~d~~-~i~~~l~ 155 (332)
+|.++-|.-|.. -.+.-|++...++. .+.+. +..-.+ +-+. +...+..|-..+.-. ....... .+...+.
T Consensus 29 kI~~v~Gtr~~~--~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~--~~~~~~~~~~~~~~~ 104 (403)
T 3ot5_A 29 KVMSIFGTRPEA--IKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIM--KKGQTLAEITSRVMN 104 (403)
T ss_dssp EEEEEECSHHHH--HHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCCCSEECCCC--C-CCCHHHHHHHHHH
T ss_pred eEEEEEecChhH--HHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcccccC--CCCCCHHHHHHHHHH
Confidence 789997777765 33355665555442 35543 444333 3222 111222221111100 0112333 3455666
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH-HHHhhhCCCCeeech
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVS 195 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~-d~l~~~~~iPii~Iv 195 (332)
+..+.|++...|++++-..+.+.+. .......++|++|+.
T Consensus 105 ~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 105 GINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp HHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 6778889999999999887777664 333446789999864
No 267
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=36.36 E-value=1.6e+02 Score=27.60 Aligned_cols=41 Identities=5% Similarity=-0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc-------hhhHHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLS-------HIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTa-------H~~~d~l~~~~~iPii~I 194 (332)
..+.++.|+++|+|+|.+..-|. ..+..++++.+++||+..
T Consensus 252 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~ 299 (365)
T 2gou_A 252 YTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYA 299 (365)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEe
Confidence 34567889999999999987542 123455666666666653
No 268
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=36.35 E-value=85 Score=27.28 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
+.+.++.++++|+|+| -+||
T Consensus 134 ~~~~a~~a~eaGad~I--~tst 153 (225)
T 1mzh_A 134 IKKAVEICIEAGADFI--KTST 153 (225)
T ss_dssp HHHHHHHHHHHTCSEE--ECCC
T ss_pred HHHHHHHHHHhCCCEE--EECC
Confidence 4556778899999999 5555
No 269
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=36.32 E-value=2e+02 Score=26.90 Aligned_cols=41 Identities=12% Similarity=-0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-------hhHHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH-------IWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH-------~~~d~l~~~~~iPii~I 194 (332)
..+.++.|+++|+|+|-+.+-+.+ .+..++++.+++||+..
T Consensus 253 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~ 300 (364)
T 1vyr_A 253 ALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGA 300 (364)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEE
Confidence 345678899999999999875421 23456666666776653
No 270
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=36.23 E-value=82 Score=27.53 Aligned_cols=75 Identities=20% Similarity=0.039 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCeee-----chHHHHHHHHHhcCCCCcCCCCceEEEEe
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLH-----VSECVAKELKEANMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii~-----Ive~t~~~l~~~g~k~~~~~~~~rVGlLa 222 (332)
+.++.++++||+.|.+..-++. ..+.++++.+++|++- -.+.+ +.+.+.|.. -.+++
T Consensus 34 ~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i-~~~~~~Gad---------~v~lg 103 (266)
T 2w6r_A 34 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHF-LEAFLAGAD---------KALAA 103 (266)
T ss_dssp HHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHH-HHHHHHTCS---------EEECC
T ss_pred HHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHH-HHHHHcCCc---------Hhhhh
Confidence 4456788999999998663321 2467888888999984 23443 445556653 44566
Q ss_pred chhh-h--chhhHHHHHHhcC
Q 020005 223 KNAI-L--TAGFYQEKLQHEG 240 (332)
Q Consensus 223 T~~T-~--~s~lY~~~l~~~G 240 (332)
+..- . ....+.+.++..|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~g 124 (266)
T 2w6r_A 104 SVFHFREIDMRELKEYLKKHG 124 (266)
T ss_dssp CCC------CHHHHHHCC---
T ss_pred HHHHhCCCCHHHHHHHHHHcC
Confidence 6433 2 4555666655555
No 271
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=36.02 E-value=1.2e+02 Score=21.96 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=14.9
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLV 102 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~ 102 (332)
.+++|+|+|+ |..... ..+.+.
T Consensus 4 ~~~~v~I~G~-G~iG~~-~~~~l~ 25 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQM-IAALLK 25 (118)
T ss_dssp TCEEEEEECC-SHHHHH-HHHHHH
T ss_pred CcCeEEEECC-CHHHHH-HHHHHH
Confidence 3578999998 987754 333343
No 272
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=36.01 E-value=2.6e+02 Score=26.25 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHcCCcEEEE--eCCCchhh---HHHHhhhC-CCCee--ech-HHHHHHHHHhcCC
Q 020005 158 RVFLEKAGARCIVM--PCHLSHIW---HDEVCKGC-SVPFL--HVS-ECVAKELKEANMK 208 (332)
Q Consensus 158 ~~~Le~~Gad~IvI--~CNTaH~~---~d~l~~~~-~iPii--~Iv-e~t~~~l~~~g~k 208 (332)
++.+.++|+|+|.+ ++.....+ ++++++.+ ++||+ ++. ...++.+.+.|.+
T Consensus 158 a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad 217 (404)
T 1eep_A 158 VEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGAD 217 (404)
T ss_dssp HHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCS
T ss_pred HHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCC
Confidence 44567899999998 22221112 35667777 78877 222 2334455555553
No 273
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=35.99 E-value=87 Score=28.17 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=22.8
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhC-CCCeeec
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC-SVPFLHV 194 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~-~iPii~I 194 (332)
++.|.+.|+|.|++........+.++.+.. ++||+.+
T Consensus 55 l~~l~~~~~dgIi~~~~~~~~~~~~~a~~~p~~p~v~i 92 (318)
T 2fqx_A 55 LSAFADENMGLVVACGSFLVEAVIETSARFPKQKFLVI 92 (318)
T ss_dssp HHHHHHTTCSEEEEESTTTHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHcCCCEEEECChhHHHHHHHHHHHCCCCEEEEE
Confidence 456778899999987644333344554433 5676654
No 274
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=35.50 E-value=1.2e+02 Score=27.70 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
+.+.++.++++|+|+|.+...|
T Consensus 227 ~~~~a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 227 LIQVADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp HHHHHHHHHHTTCSEEEECCCB
T ss_pred HHHHHHHHHHcCCcEEEEeCCc
Confidence 3455778999999999986543
No 275
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=34.95 E-value=78 Score=26.57 Aligned_cols=88 Identities=10% Similarity=0.194 Sum_probs=45.3
Q ss_pred chhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
...|.+.++|-++| |-+-..+.+|..++...- .++...+++..+. + ...|-+-.. ...+.-.+
T Consensus 41 ~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-----~~~~~~~~~~~~~--~-~~~DvvI~i-----S~SG~t~~--- 104 (200)
T 1vim_A 41 IKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLG-----YTVYVVGETVTPR--I-TDQDVLVGI-----SGSGETTS--- 104 (200)
T ss_dssp HHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTT-----CCEEETTSTTCCC--C-CTTCEEEEE-----CSSSCCHH---
T ss_pred HHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcC-----CeEEEeCCccccC--C-CCCCEEEEE-----eCCCCcHH---
Confidence 34555678899997 656666777777775432 1222222211100 0 001110000 00111122
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
+.+.++.+++.|+..|+|.+|.-.+
T Consensus 105 -~i~~~~~ak~~g~~vI~IT~~~~s~ 129 (200)
T 1vim_A 105 -VVNISKKAKDIGSKLVAVTGKRDSS 129 (200)
T ss_dssp -HHHHHHHHHHHTCEEEEEESCTTSH
T ss_pred -HHHHHHHHHHCCCeEEEEECCCCCh
Confidence 3445667888999999999987543
No 276
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=34.74 E-value=1.9e+02 Score=24.78 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-----h---hHHHHhhhCCCCeeech----HHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH-----I---WHDEVCKGCSVPFLHVS----ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH-----~---~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.++.++++|+|.|.+.--++. . .+.++++.+++|++-.. ..-++.+.+.|.. -.++++
T Consensus 35 ~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad---------~V~lg~ 105 (252)
T 1ka9_F 35 EAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGAD---------KVSVNS 105 (252)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCS---------EEEECH
T ss_pred HHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCC---------EEEECh
Confidence 4556788999998877533321 1 25777888899998520 2334555666653 446777
Q ss_pred hhhhchhhHHHHHHhcC
Q 020005 224 NAILTAGFYQEKLQHEG 240 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~G 240 (332)
..--....+.+..+..|
T Consensus 106 ~~l~~p~~~~~~~~~~~ 122 (252)
T 1ka9_F 106 AAVRRPELIRELADHFG 122 (252)
T ss_dssp HHHHCTHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHHcC
Confidence 55545555666666655
No 277
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=34.60 E-value=2.1e+02 Score=26.90 Aligned_cols=22 Identities=9% Similarity=-0.142 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
..+.++.|+++|+|+|-+..-+
T Consensus 257 ~~~la~~le~~Gvd~i~v~~~~ 278 (377)
T 2r14_A 257 AFYLAGELDRRGLAYLHFNEPD 278 (377)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeCCc
Confidence 3456788999999999997754
No 278
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=34.60 E-value=2.1e+02 Score=26.11 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=15.8
Q ss_pred cCCcEEEEeCCCchh-hHHHHhhhCCCCeeec
Q 020005 164 AGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV 194 (332)
Q Consensus 164 ~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~I 194 (332)
.++|+|+..+-.... ..+.+ +..++|+.+=
T Consensus 61 ~~~d~v~~~~e~~~~~~~~~l-~~~gi~~~~~ 91 (380)
T 3ax6_A 61 KGSDVTTYDLEHIDVQTLKKL-YNEGYKIHPS 91 (380)
T ss_dssp HTCSEEEESCSCSCHHHHHHH-HHTTCEESSC
T ss_pred hcCCEEEecccCCCHHHHHHH-HHCCCeECCC
Confidence 468987654432222 24444 4567885443
No 279
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=34.56 E-value=56 Score=29.56 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh---------hHHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI---------WHDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~---------~~d~l~~~~~iPii 192 (332)
+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 81 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPii 126 (286)
T 2r91_A 81 ALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVF 126 (286)
T ss_dssp HHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 44567889999988775433221 47888888889865
No 280
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=34.13 E-value=82 Score=29.56 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL 192 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii 192 (332)
.|.+.+.+.+.+ ..++.+.|.|+-.+-........+++.+++|-.
T Consensus 58 ~d~~~~~~~~~~---~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg~ 102 (425)
T 3vot_A 58 EDEEAAMDVVRQ---TFVEFPFDGVMTLFEPALPFTAKAAEALNLPGL 102 (425)
T ss_dssp TCHHHHHHHHHH---HHHHSCCSEEECCCGGGHHHHHHHHHHTTCSSC
T ss_pred CCHHHHHHHHHH---hhhhcCCCEEEECCchhHHHHHHHHHHcCCCCC
Confidence 455666555443 345678997753333333456788888888843
No 281
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=33.85 E-value=24 Score=33.21 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=84.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec--hHHHHHHHHHhcCCCCcCCCCceEEEEec--hhhhchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMKPLEAGSPLRIGVLAK--NAILTAGFY 232 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I--ve~t~~~l~~~g~k~~~~~~~~rVGlLaT--~~T~~s~lY 232 (332)
.++.|+.+|+|-++.- -.|. ++++..+++|+-|+ ....++++++... ..+...|++. .+......+
T Consensus 112 vA~lL~~~G~drvit~--DlH~--~qiqgfF~ipvd~l~a~p~l~~~i~~~~~------~~~~~vVVspd~Ggv~~A~~l 181 (326)
T 3s5j_B 112 VANMLSVAGADHIITM--DLHA--SQIQGFFDIPVDNLYAEPAVLKWIRENIS------EWRNCTIVSPDAGGAKRVTSI 181 (326)
T ss_dssp HHHHHHHHTCSEEEEE--SCSS--GGGGGGCSSCEEEECSHHHHHHHHHHHCT------TGGGCEEEESSGGGHHHHHHH
T ss_pred HHHHHHHcCCCEEEEE--eCCC--hHHHhhcCCceeceEcHHHHHHHHHHhcC------cCCCcEEEEECCCchHHHHHH
Confidence 3577889999977642 2454 67888899999776 4556677776421 0014555554 233433444
Q ss_pred HHHHHhcCCeEEecCccchh-hc--hHHHHHHHhcCC-h---H---HHHHHHHHHHHHHHhCCCCEEEECCCCcccCCCC
Q 020005 233 QEKLQHEGFEVVLPDKATME-HT--LIPALDALNRKD-V---E---GARNLLRIALQVLLVRAVNTVILASDDMQDLLPP 302 (332)
Q Consensus 233 ~~~l~~~Gi~vv~P~~~~q~-~~--l~~~i~~ik~g~-~---~---~a~~~l~~~~~~L~~~gad~VILGCTElpli~~~ 302 (332)
.+.| |+.+..-...... .. .+.....++ |. . + ..-..+.++++.|++.|+..|...||| +++...
T Consensus 182 A~~L---~~~~~~i~K~r~~~~~v~~~~l~g~v~-gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH-~v~~~~ 256 (326)
T 3s5j_B 182 ADRL---NVDFALIHKERKKANEVDRMVLVGDVK-DRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTH-GIFSGP 256 (326)
T ss_dssp HHHH---TCEEEEEEEC-------CCEEEESCCT-TSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEE-ECCCTT
T ss_pred HHHc---CCCEEEEEEEecCCCeeeEEeccccCC-CCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEEEe-cccCch
Confidence 4444 5544332111000 00 000011122 21 0 1 133567888889999999999999986 222111
Q ss_pred ---------C------CC----------CCCceechHHHHHHHHHHHH
Q 020005 303 ---------D------DP----------LLKKCIDPMDALARSTIKWV 325 (332)
Q Consensus 303 ---------~------~~----------~~ipvID~~~~lA~a~v~~a 325 (332)
. +. ..+.++|-...+|+++.+..
T Consensus 257 a~e~l~~~~i~~vv~t~tip~~~~~~~~~k~~~lsva~lla~aI~~i~ 304 (326)
T 3s5j_B 257 AISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTH 304 (326)
T ss_dssp HHHHHHHSCCSEEEEETTSCCHHHHHTCTTEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEecCCCChhhhccCCCeEEEEcHHHHHHHHHHHH
Confidence 0 00 12347899999999987654
No 282
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=33.76 E-value=38 Score=31.31 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCC-ch-------hhHHHHhhhCCCCeee
Q 020005 155 RRKRVFLEKAGARCIVMPCHL-SH-------IWHDEVCKGCSVPFLH 193 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNT-aH-------~~~d~l~~~~~iPii~ 193 (332)
.+.++.+...|.|+|+|. .| .. .+++.+++.+++|++=
T Consensus 56 ~~~~~~~~~sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 56 VEKAAELTRLGFAAVLLA-STDYESFESHMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp HHHHHHHHHTTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHhcCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 344566788999999999 43 23 2467788888999776
No 283
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=33.73 E-value=23 Score=32.77 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHH-HhhhCCCCeeechH--------HHHHH--HHHh-cCCCCcCCCCceEEEE
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDE-VCKGCSVPFLHVSE--------CVAKE--LKEA-NMKPLEAGSPLRIGVL 221 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~-l~~~~~iPii~Ive--------~t~~~--l~~~-g~k~~~~~~~~rVGlL 221 (332)
+.+.++-|.+.++|+|+|=... |..+++ +.+.+++||||-.+ +.++. +++. |. -.+.+|+++
T Consensus 79 l~DTarvls~~~~D~iviR~~~-~~~~~~~la~~~~vPVINAG~g~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~v 152 (291)
T 3d6n_B 79 FFDTLKTFEGLGFDYVVFRVPF-VFFPYKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIKEHFGE-----VKDLRVLYV 152 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEEESS-CCCSCHHHHHTCSSEEEEEEETTTBCHHHHHHHHHHHHHHHSC-----CTTCEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEcCC-hHHHHHHHHHhCCCCEEeCccCCCcCcHHHHHHHHHHHHHhCC-----cCCcEEEEE
Confidence 5566788999999999998875 666777 88899999999322 22211 2222 21 134589999
Q ss_pred ec---hhhhchhhHHHHHHhcCCeEEe
Q 020005 222 AK---NAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 222 aT---~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
|- ..+..| +-..+...|+++.+
T Consensus 153 GDl~~~rva~S--l~~~~~~~g~~v~~ 177 (291)
T 3d6n_B 153 GDIKHSRVFRS--GAPLLNMFGAKIGV 177 (291)
T ss_dssp SCCTTCHHHHH--HHHHHHHTTCEEEE
T ss_pred CCCCCCchHHH--HHHHHHHCCCEEEE
Confidence 97 334433 34557777988765
No 284
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=33.71 E-value=1.6e+02 Score=27.66 Aligned_cols=74 Identities=9% Similarity=-0.021 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechH---HHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSE---CVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive---~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
..+.++.|+++|+|+|-+..-+.. .+..++++.+++||+.... ..++.+.+.|.- -..-+|.......
T Consensus 244 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~a--------D~V~iGR~~lanP 315 (362)
T 4ab4_A 244 FTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKA--------DAVAFGVPFIANP 315 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSC--------SEEEESHHHHHCT
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCc--------cEEEECHHhHhCc
Confidence 345678899999999999876521 3577888888888876422 333344443310 2444565554444
Q ss_pred hhHHHH
Q 020005 230 GFYQEK 235 (332)
Q Consensus 230 ~lY~~~ 235 (332)
.+..+.
T Consensus 316 dl~~k~ 321 (362)
T 4ab4_A 316 DLPARL 321 (362)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 444443
No 285
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=33.70 E-value=1.3e+02 Score=29.27 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=48.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHH
Q 020005 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (332)
Q Consensus 81 k~IGIiGGmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (332)
.++||+ ||..|-....++.......- -...+-+.|-...|+ . +.+.++
T Consensus 266 ~~V~Ii--~gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~-------------------------~----~~~~~~ 314 (425)
T 2h31_A 266 CRVVVL--MGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPD-------------------------E----TLRIKA 314 (425)
T ss_dssp CEEEEE--ESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHH-------------------------H----HHHHHH
T ss_pred CeEEEE--ecCcccHHHHHHHHHHHHHcCCceEEeeeeccCCHH-------------------------H----HHHHHH
Confidence 478888 88888888888877665432 123344444222222 2 233445
Q ss_pred HHHHcCCc-E-EEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 160 FLEKAGAR-C-IVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 160 ~Le~~Gad-~-IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
..++.|+. + |+++--.+|- ---+...+..|||++.
T Consensus 315 ~~~~~g~~~viIa~AG~~a~L-pgvva~~t~~PVIgvP 351 (425)
T 2h31_A 315 EYEGDGIPTVFVAVAGRSNGL-GPVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHTTCCCEEEEEECCSSCCH-HHHHHHHCSSCEEECC
T ss_pred HHHHCCCCeEEEEEcCcccch-HhHHhccCCCCEEEee
Confidence 67788995 4 3333333343 2556667889999875
No 286
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.97 E-value=2.3e+02 Score=25.13 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=18.2
Q ss_pred CCceEEEEechhhhchhhH-------HHHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKNAILTAGFY-------QEKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY-------~~~l~~~Gi~vv~ 245 (332)
+.++||++-... ...+| ++.++++|+++++
T Consensus 57 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~ 93 (340)
T 1qpz_A 57 HTKSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLIL 93 (340)
T ss_dssp CCSEEEEEESCS--CSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEE
Confidence 345899987532 33444 3445667888765
No 287
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=32.95 E-value=1.7e+02 Score=27.66 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=46.8
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEe-cCccchhhchHHHHHHHhc-CCh---H---HHHHHHHHHHHHHHhCCCCEE
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVL-PDKATMEHTLIPALDALNR-KDV---E---GARNLLRIALQVLLVRAVNTV 289 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~-P~~~~q~~~l~~~i~~ik~-g~~---~---~a~~~l~~~~~~L~~~gad~V 289 (332)
+.++.|..-.++ -+.|+++|+.++. ++.+.|.-.+ ++.+.+ |.. . ...+.+..+++.+.+.|.+.+
T Consensus 92 i~~~st~fD~~s---vd~l~~~~v~~~KI~S~~~~N~pL---L~~va~~gKPviLstGmstl~Ei~~Ave~i~~~g~~vi 165 (350)
T 3g8r_A 92 FKAICTPFDEES---VDLIEAHGIEIIKIASCSFTDWPL---LERIARSDKPVVASTAGARREDIDKVVSFMLHRGKDLT 165 (350)
T ss_dssp CEEEEEECSHHH---HHHHHHTTCCEEEECSSSTTCHHH---HHHHHTSCSCEEEECTTCCHHHHHHHHHHHHTTTCCEE
T ss_pred CcEEeccCCHHH---HHHHHHcCCCEEEECcccccCHHH---HHHHHhhCCcEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 668888776553 2557778888874 7777665323 444432 211 0 135667777788887888988
Q ss_pred EECCC-Ccc
Q 020005 290 ILASD-DMQ 297 (332)
Q Consensus 290 ILGCT-Elp 297 (332)
+|=|| .||
T Consensus 166 LlhC~s~YP 174 (350)
T 3g8r_A 166 IMHCVAEYP 174 (350)
T ss_dssp EEECCCCSS
T ss_pred EEecCCCCC
Confidence 88776 344
No 288
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=32.83 E-value=2.8e+02 Score=25.12 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++..-.. -.+|.+|.+.+++||+ ++-.+++..+.+ ++ .
T Consensus 100 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------n 170 (304)
T 3l21_A 100 IRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS--HP-------N 170 (304)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHT--ST-------T
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc--CC-------C
Confidence 3455678899999987765321 1247888888899975 344456666653 21 1
Q ss_pred eEEEEechhhhchhhHHHHHHhcCCeEEecCc
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHEGFEVVLPDK 248 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~ 248 (332)
-||+==|.+.+ ..+.+.+...++.++..++
T Consensus 171 IvgiKdssgd~--~~~~~~~~~~~f~v~~G~d 200 (304)
T 3l21_A 171 IVGVXDAKADL--HSGAQIMADTGLAYYSGDD 200 (304)
T ss_dssp EEEEEECSCCH--HHHHHHHHHHCCEEEESSG
T ss_pred EEEEECCCCCH--HHHHHHhcCCCeEEEeCch
Confidence 46665555433 2344444444677766543
No 289
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=32.79 E-value=1.7e+02 Score=22.46 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=21.8
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhh
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKEL 125 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~l 125 (332)
.|+++.|+|+ |... ..+.+.+.+. .+--++++.+++-.+.+
T Consensus 5 ~~~~v~I~G~-G~iG-~~la~~L~~~----g~~V~~id~~~~~~~~~ 45 (141)
T 3llv_A 5 GRYEYIVIGS-EAAG-VGLVRELTAA----GKKVLAVDKSKEKIELL 45 (141)
T ss_dssp -CCSEEEECC-SHHH-HHHHHHHHHT----TCCEEEEESCHHHHHHH
T ss_pred CCCEEEEECC-CHHH-HHHHHHHHHC----CCeEEEEECCHHHHHHH
Confidence 4678999965 8754 3355555432 23333444555544333
No 290
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=32.70 E-value=1.2e+02 Score=26.35 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=51.3
Q ss_pred cCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcch--hhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLN--KELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 80 ~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip--~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
|++|+|+. |-|. -++.|++..... ..+..|+.+.|..+ .+-...+- |.-..... .-.++++.-
T Consensus 2 m~riavl~Sg~Gs-----nl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gI-p~~~~~~~---~~~~r~~~d-- 70 (211)
T 3p9x_A 2 MKRVAIFASGSGT-----NAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEI-PVCALDPK---TYPSKEAYE-- 70 (211)
T ss_dssp -CEEEEECCTTCH-----HHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTC-CEEECCGG---GSSSHHHHH--
T ss_pred CCEEEEEEeCCch-----HHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCC-CEEEeChh---hcCchhhhH--
Confidence 67899985 6663 367777766543 23555666656654 22122221 11110000 001221111
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+|+++... +..=+++-+.....+||+
T Consensus 71 -~~~~~~l~~~~~Dliv~agy~-~Il~~~~l~~~~~~~iNi 109 (211)
T 3p9x_A 71 -IEVVQQLKEKQIDFVVLAGYM-RLVGPTLLGAYEGRIVNI 109 (211)
T ss_dssp -HHHHHHHHHTTCCEEEESSCC-SCCCHHHHHHHTTSEEEE
T ss_pred -HHHHHHHHhcCCCEEEEeCch-hhcCHHHHhhccCCeEEE
Confidence 233467889999999998764 444344444444556665
No 291
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=32.47 E-value=3.2e+02 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=20.5
Q ss_pred ceEEEEechh-hhchhhHHHHHHhcCCeE
Q 020005 216 LRIGVLAKNA-ILTAGFYQEKLQHEGFEV 243 (332)
Q Consensus 216 ~rVGlLaT~~-T~~s~lY~~~l~~~Gi~v 243 (332)
+-|+|-||+| |-...+....|++.|.++
T Consensus 53 ~vI~VtGTNGKgSt~~~l~~iL~~~G~~v 81 (437)
T 3nrs_A 53 KIFTVAGTNGKGTTCCTLEAILLAAGLRV 81 (437)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEECCcChHHHHHHHHHHHHHCCCcE
Confidence 4688889877 344566777788888776
No 292
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=32.32 E-value=1.9e+02 Score=26.23 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=55.3
Q ss_pred cCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHH
Q 020005 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (332)
Q Consensus 80 ~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (332)
+++|+|++ |-|. .++.|.+..... ..+..|+.|+|.....-..++- |+-.... ...+..+.- .
T Consensus 90 ~~ri~vl~Sg~g~-----~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gI-p~~~~~~----~~~~r~~~~---~ 156 (286)
T 3n0v_A 90 RPKVVIMVSKADH-----CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKI-PYYHFAL----DPKDKPGQE---R 156 (286)
T ss_dssp CCEEEEEESSCCH-----HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTC-CEEECCC----BTTBHHHHH---H
T ss_pred CcEEEEEEeCCCC-----CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCC-CEEEeCC----CcCCHHHHH---H
Confidence 55788886 7773 455666555432 3466777777776542222222 1111100 111222211 1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
+..+.|++.++|+|+++... +..=+++-+...-.+||+
T Consensus 157 ~~~~~l~~~~~Dlivla~y~-~il~~~~l~~~~~~~iNi 194 (286)
T 3n0v_A 157 KVLQVIEETGAELVILARYM-QVLSPELCRRLDGWAINI 194 (286)
T ss_dssp HHHHHHHHHTCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHHHhcCCCEEEecccc-cccCHHHHhhhcCCeEEe
Confidence 33467888999999998764 544455555666667776
No 293
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=32.29 E-value=1.2e+02 Score=28.58 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCcEEEEeC
Q 020005 155 RRKRVFLEKAGARCIVMPC 173 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~C 173 (332)
....+.+++.++|+|+..+
T Consensus 72 ~~l~~~~~~~~~d~V~~~~ 90 (433)
T 2dwc_A 72 DFLWSVVEREKPDAIIPEI 90 (433)
T ss_dssp HHHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHHHcCCCEEEECc
Confidence 5556667778999887654
No 294
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=32.28 E-value=2.5e+02 Score=26.17 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++-++.|.+.+-...++|||+|+ |+.-+.--...|+ +.+-+.|+. .|.||+=..
T Consensus 138 ~ND~Tl~~Lak~Als~A~AGAdiVA-PSdMMDGrV~aIR---------------~aLd~~G~~--------~v~ImsYsa 193 (323)
T 1l6s_A 138 DNDATLENLGKQAVVAAAAGADFIA-PSAAMDGQVQAIR---------------QALDAAGFK--------DTAIMSYST 193 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEE-ECSCCTTHHHHHH---------------HHHHHTTCT--------TCEEBCCCE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEe-cccccccHHHHHH---------------HHHHhCCCC--------CceeeehhH
Confidence 5667777788888888899999554 7776665544443 445566764 699999877
Q ss_pred hhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 226 ILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
-..|.||.-.-...|=..- .|...-+ + +....++.++++...+ ++|||.|+.
T Consensus 194 KyASafYGPFRdAa~Sap~-GDRktYQ--m----------dpaN~~EAlre~~~Di-~EGAD~vMV 245 (323)
T 1l6s_A 194 KFASSFYGPFREAAGSALK-GDRKSYQ--M----------NPMNRREAIRESLLDE-AQGADCLMV 245 (323)
T ss_dssp EBCCSCCHHHHHHHTCCCS-SCCTTTS--B----------CTTCHHHHHHHHHHHH-HTTCSBEEE
T ss_pred HHhHHhhHHHHHHhcCCCC-CCccccC--C----------CCCCHHHHHHHHHhhH-HhCCceEEE
Confidence 7888888754333333211 1111100 0 1122456666666554 479997765
No 295
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=31.99 E-value=1.3e+02 Score=27.38 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=53.0
Q ss_pred ccCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCCc-chhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPL-LNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 79 ~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~-ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
.+++|+|+. |-|. -++.|.+..... -.+..|+.|+|. +-.+-..++- |+-... ....+..+.-
T Consensus 87 ~~~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gI-p~~~~~----~~~~~r~~~~-- 154 (287)
T 3nrb_A 87 DRKKVVIMVSKFDH-----CLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDI-PFHYLP----VTPATKAAQE-- 154 (287)
T ss_dssp CCCEEEEEECSCCH-----HHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTS-CEEECC----CCGGGHHHHH--
T ss_pred CCcEEEEEEeCCCc-----CHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCC-CEEEEe----ccCcchhhHH--
Confidence 466788875 7773 445555554432 346667777776 4322111111 111110 0011111111
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+|+++... +..=+++-+...-.+|||
T Consensus 155 -~~~~~~l~~~~~Dlivlagym-~il~~~~l~~~~~~~iNi 193 (287)
T 3nrb_A 155 -SQIKNIVTQSQADLIVLARYM-QILSDDLSAFLSGRCINI 193 (287)
T ss_dssp -HHHHHHHHHHTCSEEEESSCC-SCCCHHHHHHHTTSEEEE
T ss_pred -HHHHHHHHHhCCCEEEhhhhh-hhcCHHHHhhccCCeEEE
Confidence 233467888999999998774 444455555555567776
No 296
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=31.68 E-value=60 Score=30.36 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch----------------hhHHHHhhhC-CCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH----------------IWHDEVCKGC-SVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH----------------~~~d~l~~~~-~iPii~I 194 (332)
+.+.++.|+++|+|.|.+-+-|.- .++.++++.+ ++||+.-
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVian 203 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTN 203 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEE
Confidence 345567899999999999876531 1256677777 7887754
No 297
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=31.35 E-value=2.1e+02 Score=26.83 Aligned_cols=74 Identities=9% Similarity=-0.006 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-hhHHHHhhhCCCCeeechH---HHHHHHHHhcCCCCcCCCCceEEEEechhhhch
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSE---CVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH-~~~d~l~~~~~iPii~Ive---~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s 229 (332)
..+.++.|+++|+|+|-+..-+.- .+..++++.+++||+.... ..++++.+.|.- -..-+|.......
T Consensus 252 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~a--------D~V~iGR~~ladP 323 (361)
T 3gka_A 252 FGHVARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQA--------DAVAWGKLFIANP 323 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSC--------SEEEESHHHHHCT
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCc--------cEEEECHHhHhCc
Confidence 345678899999999999876521 3567888888888875432 333344443310 2444555555454
Q ss_pred hhHHHH
Q 020005 230 GFYQEK 235 (332)
Q Consensus 230 ~lY~~~ 235 (332)
.+..+.
T Consensus 324 dl~~k~ 329 (361)
T 3gka_A 324 DLPRRF 329 (361)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 544443
No 298
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=31.31 E-value=61 Score=29.41 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCch---------hhHHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH---------IWHDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH---------~~~d~l~~~~~iPii 192 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+
T Consensus 82 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPii 127 (288)
T 2nuw_A 82 ELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLY 127 (288)
T ss_dssp HHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4456788999999877543221 147888888899965
No 299
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=31.27 E-value=1.6e+02 Score=23.94 Aligned_cols=88 Identities=9% Similarity=0.006 Sum_probs=46.4
Q ss_pred chhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHH
Q 020005 74 DALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVE 152 (332)
Q Consensus 74 ~~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~ 152 (332)
...+...++|-++| |.+..++.++..++.+.- .+....+++..+. + ...|.+-... ..+.-.+
T Consensus 31 ~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-----~~~~~~~~~~~~~--~-~~~d~vI~iS-----~sG~t~~--- 94 (186)
T 1m3s_A 31 ADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMG-----FNAHIVGEILTPP--L-AEGDLVIIGS-----GSGETKS--- 94 (186)
T ss_dssp HHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTT-----CCEEETTSTTCCC--C-CTTCEEEEEC-----SSSCCHH---
T ss_pred HHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcC-----CeEEEeCcccccC--C-CCCCEEEEEc-----CCCCcHH---
Confidence 34556678999997 666666677777775432 2222222221110 0 0011111110 1111122
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 153 NLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
+.+.++.+++.|+..|+|.++...+
T Consensus 95 -~~~~~~~ak~~g~~vi~IT~~~~s~ 119 (186)
T 1m3s_A 95 -LIHTAAKAKSLHGIVAALTINPESS 119 (186)
T ss_dssp -HHHHHHHHHHTTCEEEEEESCTTSH
T ss_pred -HHHHHHHHHHCCCEEEEEECCCCCc
Confidence 3445677889999999999986443
No 300
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=31.25 E-value=1.5e+02 Score=28.24 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=45.2
Q ss_pred CCcEEEEeCCC--chhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CNT--aH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
|+|++|+..-- .|+.+...+ .-++|+++-++...+. ... +.|+|-||.| |-.+.+....|+..|.
T Consensus 64 ~~d~vV~s~gi~~~~p~~~~a~-~~~~~v~~~~~~~~~~---~~~--------~vI~VTGTnGKTTT~~ml~~iL~~~g~ 131 (439)
T 2x5o_A 64 AADLIVASPGIALAHPSLSAAA-DAGIEIVGDIELFCRE---AQA--------PIVAITGSNGKSTVTTLVGEMAKAAGV 131 (439)
T ss_dssp TCSEEEECTTSCTTCHHHHHHH-HTTCEEECHHHHHHHH---CCS--------CEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEeCCCCCCCCHHHHHHH-HCCCcEEEHHHHHHHh---cCC--------CEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 89988886542 233333332 3579999987766543 222 2899999987 4456677788888887
Q ss_pred eEEe
Q 020005 242 EVVL 245 (332)
Q Consensus 242 ~vv~ 245 (332)
.+..
T Consensus 132 ~~~~ 135 (439)
T 2x5o_A 132 NVGV 135 (439)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6643
No 301
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=31.23 E-value=50 Score=30.23 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=23.0
Q ss_pred HHHcCCcEEEEeCCCchhh---HHHHhhhCC----CCeeechHHH
Q 020005 161 LEKAGARCIVMPCHLSHIW---HDEVCKGCS----VPFLHVSECV 198 (332)
Q Consensus 161 Le~~Gad~IvI~CNTaH~~---~d~l~~~~~----iPii~Ive~t 198 (332)
|++..+|+|+|++-+...+ ...+++..+ -|+-.-++++
T Consensus 71 l~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea 115 (390)
T 4h3v_A 71 LERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEA 115 (390)
T ss_dssp TTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHH
T ss_pred hcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHH
Confidence 5567899999988664333 355555432 4655545544
No 302
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=31.23 E-value=69 Score=25.90 Aligned_cols=22 Identities=14% Similarity=0.133 Sum_probs=15.4
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEe
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
+-|+||.+|- +.|++.|+++..
T Consensus 51 f~i~AT~GTa------~~L~~~Gi~v~~ 72 (143)
T 2yvq_A 51 FKLFATEATS------DWLNANNVPATP 72 (143)
T ss_dssp CEEEEEHHHH------HHHHHTTCCCEE
T ss_pred CEEEECchHH------HHHHHcCCeEEE
Confidence 4499999983 346678887644
No 303
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=31.23 E-value=1.7e+02 Score=26.28 Aligned_cols=21 Identities=5% Similarity=-0.113 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCH 174 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CN 174 (332)
+.+.++.++++|+|+|.+..-
T Consensus 174 ~~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 174 FDIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp HHHHHHHHTTSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCcEEEecCC
Confidence 345567899999999988644
No 304
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=31.18 E-value=1.8e+02 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCcEEEE
Q 020005 155 RRKRVFLEKAGARCIVM 171 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI 171 (332)
.+.++.|+++|+|.|=+
T Consensus 35 ~~~~~~l~~~Gad~iel 51 (262)
T 1rd5_A 35 AEALRLLDGCGADVIEL 51 (262)
T ss_dssp HHHHHHHHHTTCSSEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 44566788888988766
No 305
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=30.86 E-value=2.5e+02 Score=26.45 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred hccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHH
Q 020005 78 NQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (332)
Q Consensus 78 ~~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (332)
+.||+|.|+| +...+..+.+.+.+.- +--+++++++.-...-...-...+..........-.|.+.+.+.+.
T Consensus 4 m~~~kiLI~g--~g~~a~~i~~aa~~~G----~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~-- 75 (446)
T 3ouz_A 4 MEIKSILIAN--RGEIALRALRTIKEMG----KKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAE-- 75 (446)
T ss_dssp TCCCEEEECC--CHHHHHHHHHHHHHTT----CEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHH--
T ss_pred cccceEEEEC--CCHHHHHHHHHHHHcC----CEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHH--
Q ss_pred HHHHHHcCCcEEEEeCCCch--hhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHH
Q 020005 158 RVFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK 235 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH--~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~ 235 (332)
+.++|+|+-.+-... ..+.+..+..++|+++.-..+++.+..+ ...++.
T Consensus 76 -----~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK------------------------~~~~~~ 126 (446)
T 3ouz_A 76 -----IAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDK------------------------SKAKQV 126 (446)
T ss_dssp -----HHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSH------------------------HHHHHH
T ss_pred -----HhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCH------------------------HHHHHH
Q ss_pred HHhcCCeE
Q 020005 236 LQHEGFEV 243 (332)
Q Consensus 236 l~~~Gi~v 243 (332)
+++.|+.+
T Consensus 127 l~~~Gip~ 134 (446)
T 3ouz_A 127 MQRAGVPV 134 (446)
T ss_dssp HHHTTCCB
T ss_pred HHHcCCCc
No 306
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=30.82 E-value=73 Score=31.38 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=46.3
Q ss_pred CCcEEEEeCC--CchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh-hhchhhHHHHHHhcCC
Q 020005 165 GARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 165 Gad~IvI~CN--TaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~-T~~s~lY~~~l~~~Gi 241 (332)
++|+||+.-- -.|+.+.+.++ .++||++=+|...+.+.+ .. +.|||-||.| |-.+.+....|+..|.
T Consensus 80 ~~d~vV~Spgi~~~~p~l~~a~~-~gi~v~~~~e~l~~~~~~-~~--------~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 80 APDLVVVGNAMKRGMDVIEYMLD-TGLRYTSGPQFLSEQVLQ-SR--------HVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp CCSEEEECTTCCTTSHHHHHHHH-HTCCEEEHHHHHHHHTGG-GS--------EEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCcCCCCHHHHHHHH-CCCcEEEHHHHHHHHHhc-cC--------cEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 6888887432 23556655554 489999998866654322 11 2699999988 4456677788888887
Q ss_pred eE
Q 020005 242 EV 243 (332)
Q Consensus 242 ~v 243 (332)
++
T Consensus 150 ~~ 151 (524)
T 3hn7_A 150 DA 151 (524)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 307
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=30.61 E-value=1.9e+02 Score=26.41 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=55.8
Q ss_pred ccCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHH
Q 020005 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (332)
Q Consensus 79 ~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (332)
.+++|+|+. |-|. .++.|.+..... -.+..|+.|+|.....-..++- |+-... ....+..+.-
T Consensus 94 ~~~ri~vl~Sg~g~-----~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gI-p~~~~~----~~~~~r~~~~--- 160 (292)
T 3lou_A 94 ARPKVLIMVSKLEH-----CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGL-PFRHFP----ITADTKAQQE--- 160 (292)
T ss_dssp SCCEEEEEECSCCH-----HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTC-CEEECC----CCSSCHHHHH---
T ss_pred CCCEEEEEEcCCCc-----CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCC-CEEEeC----CCcCCHHHHH---
Confidence 356788875 7773 455555554432 3566777777776543222222 111110 0112222211
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+|+++... +..=+++-+...-.+||+
T Consensus 161 ~~~~~~l~~~~~Dlivla~y~-~il~~~~l~~~~~~~iNi 199 (292)
T 3lou_A 161 AQWLDVFETSGAELVILARYM-QVLSPEASARLANRAINI 199 (292)
T ss_dssp HHHHHHHHHHTCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEecCch-hhCCHHHHhhhcCCeEEe
Confidence 123467888999999998774 444455555566667776
No 308
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=30.60 E-value=63 Score=30.18 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||... +.++. +++. |. -.+.+|+++|-
T Consensus 91 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 163 (321)
T 1oth_A 91 LTDTARVLSSM-ADAVLARVYK-QSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSS-----LKGLTLSWIGD 163 (321)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEeCCC-hhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45666788888 7999998774 88889999999999999743 12211 2222 21 13458999997
Q ss_pred h-hhhchhhHHHHHHhcCCeEEe
Q 020005 224 N-AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~-~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
- .+..| +-..+...|+++.+
T Consensus 164 ~~~va~S--l~~~~~~~G~~v~~ 184 (321)
T 1oth_A 164 GNNILHS--IMMSAAKFGMHLQA 184 (321)
T ss_dssp SSHHHHH--HHTTTGGGTCEEEE
T ss_pred chhhHHH--HHHHHHHcCCeEEE
Confidence 3 23222 33345566888765
No 309
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.44 E-value=1.3e+02 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=15.7
Q ss_pred hhccCeEEEEeCCChHHHHHHHHHH
Q 020005 77 LNQANTVGIVGGASVDSTLNLLGKL 101 (332)
Q Consensus 77 ~~~~k~IGIiGGmGp~AT~~~y~kI 101 (332)
|+.+-+|||| |.|..+...+.+.+
T Consensus 4 M~~~~rvgii-G~G~~g~~~~~~~~ 27 (352)
T 3kux_A 4 MADKIKVGLL-GYGYASKTFHAPLI 27 (352)
T ss_dssp TTCCEEEEEE-CCSHHHHHTHHHHH
T ss_pred ccCCceEEEE-CCCHHHHHHHHHHH
Confidence 5555689999 57887754344433
No 310
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=30.43 E-value=1.3e+02 Score=25.00 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (332)
|+|..-|.+++.++-+..... ++.+|++. --..|...+ ....+.+...+.+...++.+.+.|+.
T Consensus 57 Gi~G~tt~~~l~r~~~~v~~~-~Pd~vvi~-~G~ND~~~~--------------~~~~~~~~~~~~l~~ii~~~~~~~~~ 120 (209)
T 4hf7_A 57 GISGQTSYQFLLRFREDVINL-SPALVVIN-AGTNDVAEN--------------TGAYNEDYTFGNIASMAELAKANKIK 120 (209)
T ss_dssp ECTTCCHHHHHHHHHHHTGGG-CCSEEEEC-CCHHHHTTS--------------SSSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccCcccHHHHHHHHHHHHHhc-CCCEEEEE-eCCCcCccc--------------cccccHHHHHHHHHHhhHHHhccCce
Confidence 677777888887776544332 56676655 111221100 01234556777788888888889999
Q ss_pred EEEEe
Q 020005 168 CIVMP 172 (332)
Q Consensus 168 ~IvI~ 172 (332)
.+++.
T Consensus 121 iil~~ 125 (209)
T 4hf7_A 121 VILTS 125 (209)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88763
No 311
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=30.00 E-value=80 Score=28.96 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=43.8
Q ss_pred CceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHH----HHhcCChHHHHHHHHHHHHHHHhCCCCEEE
Q 020005 215 PLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALD----ALNRKDVEGARNLLRIALQVLLVRAVNTVI 290 (332)
Q Consensus 215 ~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~----~ik~g~~~~a~~~l~~~~~~L~~~gad~VI 290 (332)
.+||+|..|.||--+...-+.+.+.|+..++-.+-.++.....+.+ -+..|.+..-.--++.+.+.|.+.|.+ +
T Consensus 195 vgkIaV~~GgGtsG~~~~i~~a~~~GvDt~ITGe~~~~~~~~~A~E~ginVI~AGHyATEt~Gv~aL~~~Le~~Gle--v 272 (278)
T 3rxy_A 195 LGKIAVVHGAGTNGGYAVARAYFDHGVRTVLYIHIAPEEAERLRREGGGNLIVTGHIASDLVGINRYVQALEERGVE--V 272 (278)
T ss_dssp CCSEEECCSSSSCCHHHHHHHHHHTTCCEEEESCCCHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHHHTTCE--E
T ss_pred CCEEEEEcCCCCCCcHHHHHHHHHcCCCEEEEecCchHHHHHHHHHcCCeEEEeccchHhHHHHHHHHHHHHHcCCe--e
Confidence 3789999998886544444445667998877543322211011111 022344422222345555666678998 4
Q ss_pred ECCCCc
Q 020005 291 LASDDM 296 (332)
Q Consensus 291 LGCTEl 296 (332)
+.|..|
T Consensus 273 i~~sGl 278 (278)
T 3rxy_A 273 VRMSGL 278 (278)
T ss_dssp EECTTC
T ss_pred eccCCC
Confidence 488764
No 312
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=29.68 E-value=92 Score=26.17 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=18.5
Q ss_pred CceEEEEechhhhc-------------hhhHHHHHHhcCCeEE
Q 020005 215 PLRIGVLAKNAILT-------------AGFYQEKLQHEGFEVV 244 (332)
Q Consensus 215 ~~rVGlLaT~~T~~-------------s~lY~~~l~~~Gi~vv 244 (332)
..||+|+.|...+. +.+....|++.|++++
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~ 57 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKII 57 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEE
Confidence 44899999864321 2334566677777654
No 313
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=29.65 E-value=2.8e+02 Score=26.63 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=20.5
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHh
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLS 105 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t 105 (332)
.++|-||||.-..+-+.-+++|.+..
T Consensus 169 ~~~VNilg~~~~~~d~~eik~lL~~~ 194 (458)
T 1mio_B 169 NGKINVIPGFVGPADMREIKRLFEAM 194 (458)
T ss_dssp CSCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHc
Confidence 45799999987777777788888766
No 314
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=29.56 E-value=2.1e+02 Score=25.72 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCch
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSH 177 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH 177 (332)
.+++++.+.+....+ ++..+|+++|++-+..
T Consensus 54 ~~~~~ll~~~~~l~~--~~~~vD~V~I~tP~~~ 84 (312)
T 3o9z_A 54 TEPEAFEAYLEDLRD--RGEGVDYLSIASPNHL 84 (312)
T ss_dssp SCHHHHHHHHHHHHH--TTCCCSEEEECSCGGG
T ss_pred CCHHHHHHHhhhhcc--cCCCCcEEEECCCchh
Confidence 356666544322111 4678999999887643
No 315
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=29.53 E-value=54 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=19.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWH 180 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~ 180 (332)
+.++.++.|+|+++++--|+|-.|
T Consensus 160 a~~Fv~~TgvD~LAvaiGt~HG~Y 183 (307)
T 3n9r_A 160 AEQFVKESQVDYLAPAIGTSHGAF 183 (307)
T ss_dssp HHHHHHHHCCSEEEECSSCCSSSB
T ss_pred HHHHHHHHCCCEEEEecCCccccc
Confidence 345567789999999999999643
No 316
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=29.46 E-value=2.7e+02 Score=26.20 Aligned_cols=39 Identities=8% Similarity=-0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch------hhHHHHhhhCCCCeee
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH------IWHDEVCKGCSVPFLH 193 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH------~~~d~l~~~~~iPii~ 193 (332)
..+.++.|++.|+|+|-+.+-+.+ . ..++++.+++||+.
T Consensus 268 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~iPvi~ 312 (379)
T 3aty_A 268 TKHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYSGVKIS 312 (379)
T ss_dssp HHHHHHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCCCcEEE
Confidence 345678899999999999885521 2 34455555555554
No 317
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.36 E-value=76 Score=28.73 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee--e--------chHHHHHHHHHhcCCCCcCCCCce
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL--H--------VSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii--~--------Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+ | +-..++..+.+. ++ +-
T Consensus 86 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~-~p-------ni 157 (289)
T 2yxg_A 86 ELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEE-YS-------NI 157 (289)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH-CT-------TE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHHh-CC-------CE
Confidence 4456778899999877543321 147888888889864 3 444555666522 11 14
Q ss_pred EEEEechhhhchhhHHHHHHhcCCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHHH
Q 020005 218 IGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLRI 276 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~~ 276 (332)
||+==|.+.+ ..+.+.++..++.++.-+++.. .+.+..++++.++|+.+++++...+
T Consensus 158 vgiK~s~gd~--~~~~~~~~~~~f~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~ 233 (289)
T 2yxg_A 158 SAVKEANPNL--SQVSELIHDAKITVLSGNDELTLPIIALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYK 233 (289)
T ss_dssp EEEEECCSCT--HHHHHHHHHTCSEEEESCGGGHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEEEeCCCCH--HHHHHHHHhCCeEEEECcHHHHHHHHHCCCCEEEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5664443432 2233333322565555433210 0112233566777888777654443
No 318
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=29.32 E-value=2.6e+02 Score=26.28 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred HHHHcCCcEEEEeCCCc--hhhHHHHhhhCCCCeeechHH
Q 020005 160 FLEKAGARCIVMPCHLS--HIWHDEVCKGCSVPFLHVSEC 197 (332)
Q Consensus 160 ~Le~~Gad~IvI~CNTa--H~~~d~l~~~~~iPii~Ive~ 197 (332)
..++.++|+|+..+-.. ...+.++.+..++|+++.-..
T Consensus 68 ~~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~ 107 (451)
T 2vpq_A 68 IATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQ 107 (451)
T ss_dssp HHHHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHH
T ss_pred HHHHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHH
Confidence 44567899877654321 222334445678998875433
No 319
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=29.17 E-value=3.3e+02 Score=24.79 Aligned_cols=110 Identities=15% Similarity=0.028 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++.+-... .+|.+|.+.+++||+ ++-.+++..+... .+ +
T Consensus 109 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~-~p-------n 180 (315)
T 3na8_A 109 VRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVRE-VD-------N 180 (315)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH-ST-------T
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhc-CC-------C
Confidence 34556788999999888654321 157888888899974 3444566666222 11 1
Q ss_pred eEEEEechhhhchhhHHHHHHhc--CCeEEecCccchh-------------------hchHHHHHHHhcCChHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATME-------------------HTLIPALDALNRKDVEGARNLL 274 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q~-------------------~~l~~~i~~ik~g~~~~a~~~l 274 (332)
-||+=-|.+.+ ..+.+.++.. ++.++..+++.-- +.+..++++.++|+.+++++..
T Consensus 181 IvgiKdssgd~--~~~~~~~~~~~~~f~v~~G~D~~~l~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~ 257 (315)
T 3na8_A 181 VTMVKESTGDI--QRMHKLRLLGEGRVPFYNGCNPLALEAFVAGAKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALF 257 (315)
T ss_dssp EEEEEECSSCH--HHHHHHHHHTTTCSCEEECCGGGHHHHHHHTCSEEEESGGGTCHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred EEEEECCCCCH--HHHHHHHHHcCCCEEEEeCchHHHHHHHHCCCCEEEechhhhCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46665554433 2344444432 4666554432110 1122335667788887665443
No 320
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=29.15 E-value=3.2e+02 Score=25.48 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++-++.+.+.+-...++|||.|+ |+.-+.--...|+ +.+-+.|+. .|.||+=..
T Consensus 144 ~ND~Tl~~L~k~Als~A~AGADiVA-PSdMMDGrV~aIR---------------~aLd~~G~~--------~v~ImsYsa 199 (328)
T 1w1z_A 144 LNDETVEVLQKMAVSHAEAGADFVS-PSDMMDGRIGAIR---------------EALDETDHS--------DVGILSYAA 199 (328)
T ss_dssp EHHHHHHHHHHHHHHHHHHTCSEEE-ECSCCTTHHHHHH---------------HHHHHTTCT--------TSEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEe-cccccccHHHHHH---------------HHHHhCCCC--------CceeeehhH
Confidence 4566677787777778899999554 7777665544444 445566765 699999888
Q ss_pred hhchhhHHHHHHhcCC
Q 020005 226 ILTAGFYQEKLQHEGF 241 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi 241 (332)
-..|.||.-.-...|=
T Consensus 200 KyASafYGPFRdAa~S 215 (328)
T 1w1z_A 200 KYASSFYGPFRDALHS 215 (328)
T ss_dssp EBCCTTCHHHHHHTTC
T ss_pred HHhhhccchHHHHhcc
Confidence 8889999765444443
No 321
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=29.08 E-value=81 Score=28.61 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 81 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 130 (294)
T 2ehh_A 81 THEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPII 130 (294)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
No 322
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.06 E-value=2e+02 Score=24.93 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=19.3
Q ss_pred CCceEEEEech---hhhchhhHH-------HHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKN---AILTAGFYQ-------EKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~---~T~~s~lY~-------~~l~~~Gi~vv~ 245 (332)
++++|||+-.. ..+...+|. +.++++|+.+++
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~ 47 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQT 47 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEE
Confidence 34589999743 234444554 445566888765
No 323
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.00 E-value=1.3e+02 Score=25.80 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=33.4
Q ss_pred CCceEEEEechhhhchhhHH-------HHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCC
Q 020005 214 SPLRIGVLAKNAILTAGFYQ-------EKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAV 286 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY~-------~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~ga 286 (332)
++++|||+.... ...+|. +.++++|+++++-+.. ++. +...+.++.+..+++
T Consensus 7 ~~~~Igvv~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---------------~~~----~~~~~~~~~l~~~~v 65 (291)
T 3egc_A 7 RSNVVGLIVSDI--ENVFFAEVASGVESEARHKGYSVLLANTA---------------EDI----VREREAVGQFFERRV 65 (291)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECT---------------TCH----HHHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC--cchHHHHHHHHHHHHHHHCCCEEEEEeCC---------------CCH----HHHHHHHHHHHHCCC
Confidence 345899998642 233443 4455668877652111 000 111233445666788
Q ss_pred CEEEECCCC
Q 020005 287 NTVILASDD 295 (332)
Q Consensus 287 d~VILGCTE 295 (332)
|+||+..+.
T Consensus 66 dgiIi~~~~ 74 (291)
T 3egc_A 66 DGLILAPSE 74 (291)
T ss_dssp SEEEECCCS
T ss_pred CEEEEeCCC
Confidence 888887764
No 324
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=28.90 E-value=78 Score=31.15 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCcEEEEe
Q 020005 156 RKRVFLEKAGARCIVMP 172 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~ 172 (332)
+.++.|.++|||+|++.
T Consensus 284 e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 284 EGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhCCCEEEEC
Confidence 34577899999999984
No 325
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=28.83 E-value=81 Score=28.57 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++..-.. -.+|.+|.+.+++||+ ++-..++..+.+. ++ +
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~-~p-------n 156 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFED-CP-------N 156 (292)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH-CT-------T
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhh-CC-------C
Confidence 3445678899999987755421 1146788888899974 3455666666541 11 1
Q ss_pred eEEEEechhhhchhhHHHHHHhc--CCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLR 275 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~ 275 (332)
-+|+==|.+.+ ..+.+.++.. ++.++.-+++.- .+.+...+++.++|+.+++++...
T Consensus 157 IvgiK~s~gd~--~~~~~~~~~~~~~f~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~ 234 (292)
T 2vc6_A 157 VKGVXDATGNL--LRPSLERMACGEDFNLLTGEDGTALGYMAHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQD 234 (292)
T ss_dssp EEEEEECSCCT--HHHHHHHHHSCTTSEEEESCGGGHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEecCCCCH--HHHHHHHHHcCCCEEEEECchHHHHHHHHcCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45664444432 2234444333 455554433210 011223356677888877765444
Q ss_pred HH
Q 020005 276 IA 277 (332)
Q Consensus 276 ~~ 277 (332)
++
T Consensus 235 ~l 236 (292)
T 2vc6_A 235 RL 236 (292)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 326
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.56 E-value=2.2e+02 Score=22.48 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=41.4
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhH---HH
Q 020005 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFY---QE 234 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY---~~ 234 (332)
++..++.++|+|+++|-..|.. +. +..+++.+++.+.+ ..+|.+=|. .++...-| .+
T Consensus 47 v~~a~~~~~d~v~lS~~~~~~~-~~------------~~~~i~~l~~~g~~------~i~v~vGG~-~~~~~~~~~~~~~ 106 (137)
T 1ccw_A 47 IKAAIETKADAILVSSLYGQGE-ID------------CKGLRQKCDEAGLE------GILLYVGGN-IVVGKQHWPDVEK 106 (137)
T ss_dssp HHHHHHHTCSEEEEEECSSTHH-HH------------HTTHHHHHHHTTCT------TCEEEEEES-CSSSSCCHHHHHH
T ss_pred HHHHHhcCCCEEEEEecCcCcH-HH------------HHHHHHHHHhcCCC------CCEEEEECC-CcCchHhhhhhHH
Confidence 3445677899999988765544 22 23455667776542 125544443 23222234 55
Q ss_pred HHHhcCCeEEecCc
Q 020005 235 KLQHEGFEVVLPDK 248 (332)
Q Consensus 235 ~l~~~Gi~vv~P~~ 248 (332)
.+++.|++.+.++.
T Consensus 107 ~~~~~G~d~~~~~g 120 (137)
T 1ccw_A 107 RFKDMGYDRVYAPG 120 (137)
T ss_dssp HHHHTTCSEECCTT
T ss_pred HHHHCCCCEEECCC
Confidence 68888998877544
No 327
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=28.36 E-value=1.6e+02 Score=26.75 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=11.9
Q ss_pred hhccCeEEEEeCCChHHH
Q 020005 77 LNQANTVGIVGGASVDST 94 (332)
Q Consensus 77 ~~~~k~IGIiGGmGp~AT 94 (332)
|+.+.+|||| |.|..+.
T Consensus 2 M~~~~~vgii-G~G~~g~ 18 (354)
T 3db2_A 2 MYNPVGVAAI-GLGRWAY 18 (354)
T ss_dssp CCCCEEEEEE-CCSHHHH
T ss_pred CCCcceEEEE-ccCHHHH
Confidence 3345689999 5787764
No 328
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.33 E-value=85 Score=28.55 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc---h-----hhHHHHhhhCCCCee--e--------chHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS---H-----IWHDEVCKGCSVPFL--H--------VSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa---H-----~~~d~l~~~~~iPii--~--------Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++..-.. . .+|.+|.+.+++||+ | +-.+++..+.+ ++ +
T Consensus 92 i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------n 162 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAE--IP-------N 162 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT--ST-------T
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHc--CC-------C
Confidence 3445678899999987754321 1 157888888899974 3 33344444442 11 2
Q ss_pred eEEEEechhhhchhhHHHHHHhc--CCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLR 275 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~ 275 (332)
-+|+==|.+.+ ..+.+.++.. ++.++.-+++.- .+.+..++++.++|+.+++++...
T Consensus 163 ivgiKdssgd~--~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~ 240 (297)
T 3flu_A 163 IVGVKEASGNI--GSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMCRAALQGDIALARELND 240 (297)
T ss_dssp EEEEEECSCCH--HHHHHHHHHSCTTCEEEECCGGGHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred EEEEEeCCCCH--HHHHHHHHhcCCCeEEEECcHHHHHHHHhCCCCEEEechHhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45665554433 2344444443 566655443211 011223355677788877766544
Q ss_pred HHH
Q 020005 276 IAL 278 (332)
Q Consensus 276 ~~~ 278 (332)
.+.
T Consensus 241 ~l~ 243 (297)
T 3flu_A 241 RLI 243 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 329
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=28.28 E-value=71 Score=27.26 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=19.5
Q ss_pred ceEEEEechhhh-------chhhHHHHHHhcCCeEE
Q 020005 216 LRIGVLAKNAIL-------TAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 216 ~rVGlLaT~~T~-------~s~lY~~~l~~~Gi~vv 244 (332)
.||+|+.|-..+ .+.+....|++.|++++
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~ 66 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVD 66 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEE
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEE
Confidence 489999986544 23445567777787764
No 330
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=28.27 E-value=1.3e+02 Score=27.23 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHH---HHcCCcEEEEeCCCchhh---HHHHhhhC----CCCeeechHH---HHHHHHHhc
Q 020005 145 LDDSLIVENLRRKRVFL---EKAGARCIVMPCHLSHIW---HDEVCKGC----SVPFLHVSEC---VAKELKEAN 206 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~L---e~~Gad~IvI~CNTaH~~---~d~l~~~~----~iPii~Ive~---t~~~l~~~g 206 (332)
.+++++.+.+. .| .+..+|+++|++-+...+ ...+++.. .-|+-.-.+. .++.+++.|
T Consensus 54 ~~~~~ll~~~~----~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 124 (318)
T 3oa2_A 54 TEFEFFLDHAS----NLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETD 124 (318)
T ss_dssp SSHHHHHHHHH----HHTTSTTTSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhhh----hhhhccCCCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 35666554432 33 367899999998764332 34454432 3465444333 334444443
No 331
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=28.13 E-value=59 Score=30.09 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh-cCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA-NMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~-g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++. +++. |. -.+.+|+++|-
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~la~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~ia~vGD 162 (301)
T 2ef0_A 90 VRDVAKNLERF-VEGIAARVFR-HETVEALARHAKVPVVNALSDRAHPLQALADLLTLKEVFGG-----LAGLEVAWVGD 162 (301)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred hHHHHHHHHHh-CCEEEEecCC-hHHHHHHHHHCCCCEEeCCCCccCchHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45666778887 7999998874 88889999999999999743 22211 2222 21 13458999997
Q ss_pred h-hhhchhhHHHHHHhcCCeEEe
Q 020005 224 N-AILTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 224 ~-~T~~s~lY~~~l~~~Gi~vv~ 245 (332)
- .+.. -+-..+...|+++.+
T Consensus 163 ~~rva~--Sl~~~~~~~g~~v~~ 183 (301)
T 2ef0_A 163 GNNVLN--SLLEVAPLAGLKVRV 183 (301)
T ss_dssp CCHHHH--HHHHHHHHHTCEEEE
T ss_pred CchhHH--HHHHHHHHcCCEEEE
Confidence 3 3333 334456677988865
No 332
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=28.09 E-value=2e+02 Score=27.07 Aligned_cols=40 Identities=10% Similarity=-0.223 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch---------hhHHHHhhhCCCCeee
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH---------IWHDEVCKGCSVPFLH 193 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH---------~~~d~l~~~~~iPii~ 193 (332)
..+.++.|++.|+|+|-+..-+.+ .+..++++.+++||+.
T Consensus 258 ~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~ 306 (376)
T 1icp_A 258 GLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIV 306 (376)
T ss_dssp HHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEE
Confidence 345678899999999999875432 1235566666666653
No 333
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=28.08 E-value=1.1e+02 Score=27.70 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=14.8
Q ss_pred hhccCeEEEEeCCChHHHHHHHHHHH
Q 020005 77 LNQANTVGIVGGASVDSTLNLLGKLV 102 (332)
Q Consensus 77 ~~~~k~IGIiGGmGp~AT~~~y~kI~ 102 (332)
|+.+.+|||| |.|..+.. +.+.+.
T Consensus 1 M~~~~rvgii-G~G~~g~~-~~~~l~ 24 (344)
T 3euw_A 1 MSLTLRIALF-GAGRIGHV-HAANIA 24 (344)
T ss_dssp --CCEEEEEE-CCSHHHHH-HHHHHH
T ss_pred CCCceEEEEE-CCcHHHHH-HHHHHH
Confidence 4456689999 57887763 444443
No 334
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=27.76 E-value=65 Score=29.76 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH--------HHHHH--HHHh-cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE--------CVAKE--LKEA-NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive--------~t~~~--l~~~-g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++. +++. |. -.+.+|+++|
T Consensus 84 l~DTarvls~~-~D~iviR~~~-~~~~~~la~~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~-----l~gl~va~vG 156 (299)
T 1pg5_A 84 LADTIRMLNNY-SDGIVMRHKY-DGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNT-----IDGLVFALLG 156 (299)
T ss_dssp HHHHHHHHHHH-CSEEEEEESS-BTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHHHHHHHHSC-----STTCEEEEEE
T ss_pred HHHHHHHHHHh-CCEEEEeCCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCC-----cCCcEEEEEC
Confidence 55667788888 7999998764 77789999999999999733 22221 2222 21 1345899999
Q ss_pred ch---hhhchhhHHHHHHhc-CCeEEe
Q 020005 223 KN---AILTAGFYQEKLQHE-GFEVVL 245 (332)
Q Consensus 223 T~---~T~~s~lY~~~l~~~-Gi~vv~ 245 (332)
-- .+.. -+-..+... |+++.+
T Consensus 157 D~~~~rva~--Sl~~~~~~~~g~~v~~ 181 (299)
T 1pg5_A 157 DLKYARTVN--SLLRILTRFRPKLVYL 181 (299)
T ss_dssp CCSSCHHHH--HHHHHGGGSCCSEEEE
T ss_pred CCCCCchHH--HHHHHHHhCCCCEEEE
Confidence 63 3333 334456777 888765
No 335
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=27.75 E-value=85 Score=28.72 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 93 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 142 (306)
T 1o5k_A 93 TEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIV 142 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
No 336
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=27.70 E-value=2.3e+02 Score=28.16 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-------h-hhHHHHhhhCCCCeee
Q 020005 156 RKRVFLEKAGARCIVMPCHLS-------H-IWHDEVCKGCSVPFLH 193 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa-------H-~~~d~l~~~~~iPii~ 193 (332)
+.++.+++.||+.|++-+-+. . ..+.++.+.+++|||-
T Consensus 456 e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIa 501 (555)
T 1jvn_A 456 ELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIA 501 (555)
T ss_dssp HHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEE
Confidence 456789999999998755332 1 2368888889999985
No 337
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.68 E-value=87 Score=28.56 Aligned_cols=111 Identities=11% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCee--e--------chHHHHHHHHHhcCCCCcCCCCce
Q 020005 156 RKRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFL--H--------VSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPii--~--------Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
+.++..++.|||++++..-.. -.+|.+|.+.+++||+ | |-..++..+.+ .+ +-
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------nI 168 (301)
T 1xky_A 98 DLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE--IE-------NI 168 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT--ST-------TE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc--CC-------CE
Confidence 445678899999887754322 1147888888888864 3 33445555543 21 24
Q ss_pred EEEEechhhhchhhHHHHHHhc--CCeEEecCccchh-------------------hchHHHHHHHhcCChHHHHHHHHH
Q 020005 218 IGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATME-------------------HTLIPALDALNRKDVEGARNLLRI 276 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q~-------------------~~l~~~i~~ik~g~~~~a~~~l~~ 276 (332)
||+==|.+-+ ..+.+.++.. ++.++.-+++..- +.+..++++.++|+.++++++..+
T Consensus 169 vgiKdssgd~--~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~ 246 (301)
T 1xky_A 169 VAIKDAGGDV--LTMTEIIEKTADDFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQL 246 (301)
T ss_dssp EEEEECSSCH--HHHHHHHHHSCTTCEEEESSGGGHHHHHHTTCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEEEcCCCCH--HHHHHHHHhcCCCeEEEECcHHHHHHHHHcCCCEEEcCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6665444433 2344444433 4666554432110 112223456677888777654443
Q ss_pred H
Q 020005 277 A 277 (332)
Q Consensus 277 ~ 277 (332)
+
T Consensus 247 l 247 (301)
T 1xky_A 247 L 247 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 338
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=27.66 E-value=3.9e+02 Score=25.07 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++-++.|.+.+-...++|||+|+ |+.-+.--...|+ +.+-+.|+. .|.||+=..
T Consensus 149 ~ND~Tl~~L~k~Als~A~AGADiVA-PSdMMDGrV~aIR---------------~aLd~~G~~--------~v~ImsYsa 204 (337)
T 1w5q_A 149 LNDVSIDVLVRQALSHAEAGAQVVA-PSDMMDGRIGAIR---------------EALESAGHT--------NVRVMAYSA 204 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEE-ECSCCTTHHHHHH---------------HHHHHTTCT--------TCEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEe-cccccccHHHHHH---------------HHHHHCCCC--------CceeehhHH
Confidence 5667777788878788899999554 7777665544444 445566765 799999888
Q ss_pred hhchhhHHHHH
Q 020005 226 ILTAGFYQEKL 236 (332)
Q Consensus 226 T~~s~lY~~~l 236 (332)
-..|.||.-.-
T Consensus 205 KyASafYGPFR 215 (337)
T 1w5q_A 205 KYASAYYGPFR 215 (337)
T ss_dssp EBCCGGGHHHH
T ss_pred HHHHHHHHHHH
Confidence 88899997643
No 339
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=27.66 E-value=87 Score=29.01 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
..+++.+.++.+.+.|+-.|..+|.+ ..+++.+.+ +++-++++
T Consensus 229 ~~p~~~~i~~~i~~~g~~~i~~~~G~-~~~l~~l~~-~g~d~~~~ 271 (359)
T 2inf_A 229 IKPVMNRIFSELAKENVPLIMFGVGA-SHLAGDWHD-LPLDVVGL 271 (359)
T ss_dssp THHHHHHHHHHHGGGCSCEEEECTTC-GGGHHHHHT-SSCSEEEC
T ss_pred hHHHHHHHHHHHHHcCCcEEEEcCCc-HHHHHHHHH-hCCCEEEe
Confidence 34455555555655566666666666 445555543 44445554
No 340
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=27.64 E-value=86 Score=28.38 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCce
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+ ++-.+++..+.+ ++ +-
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------ni 157 (291)
T 3tak_A 87 ELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAE--IP-------NI 157 (291)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTT--ST-------TE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHc--CC-------CE
Confidence 4456788999999877542211 147888888899974 333445555542 11 24
Q ss_pred EEEEechhhhchhhHHHHHHhc--CCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHHH
Q 020005 218 IGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLRI 276 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~~ 276 (332)
+|+==|.+.+ ..+.+.++.. ++.++.-+++.- .+.+..++++.++|+.+++++...+
T Consensus 158 vgiK~ssgd~--~~~~~~~~~~~~~f~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~ 235 (291)
T 3tak_A 158 VGIKDATGDV--PRGKALIDALNGKMAVYSGDDETAWELMLLGADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNK 235 (291)
T ss_dssp EEEEECSCCH--HHHHHHHHHHTTSSEEEECCHHHHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred EEEEeCCCCH--HHHHHHHHHcCCCeEEEECcHHHHHHHHHCCCCEEEechhhhcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6665554433 2234444332 566655433211 0112233566778888776654433
No 341
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=27.60 E-value=83 Score=28.92 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii 192 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 141 (314)
T 3d0c_A 97 ELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSI 141 (314)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 4456788999999887554221 147888888999974
No 342
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=27.54 E-value=2.9e+02 Score=23.58 Aligned_cols=52 Identities=19% Similarity=-0.031 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCeeech----HHHHHHHHHhcC
Q 020005 156 RKRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFLHVS----ECVAKELKEANM 207 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPii~Iv----e~t~~~l~~~g~ 207 (332)
+.++.+++.|++.|++...+. -..+.++++.+++|++-.. ..-+..+.+.|.
T Consensus 155 e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Ga 218 (253)
T 1thf_D 155 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGA 218 (253)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCC
Confidence 334567889999888754321 1136778888899998643 244445556554
No 343
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=27.49 E-value=98 Score=28.30 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCch----------hhHHHHhhhCCCCee--e--------chHHHHHHHHHhcCCCCcCCCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH----------IWHDEVCKGCSVPFL--H--------VSECVAKELKEANMKPLEAGSP 215 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH----------~~~d~l~~~~~iPii--~--------Ive~t~~~l~~~g~k~~~~~~~ 215 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+ | |-.+++..+.+ ++
T Consensus 100 ~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p------- 170 (307)
T 3s5o_A 100 EMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ--HP------- 170 (307)
T ss_dssp HHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT--ST-------
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc--CC-------
Confidence 4456788999999887432211 147888888888874 3 34455555553 21
Q ss_pred ceEEEEechhhhchhhHHHHHHh---cCCeEEecCccchh-------------------hchHHHHHHHhcCChHHHHHH
Q 020005 216 LRIGVLAKNAILTAGFYQEKLQH---EGFEVVLPDKATME-------------------HTLIPALDALNRKDVEGARNL 273 (332)
Q Consensus 216 ~rVGlLaT~~T~~s~lY~~~l~~---~Gi~vv~P~~~~q~-------------------~~l~~~i~~ik~g~~~~a~~~ 273 (332)
.-||+==|.+.+ ..+.+.++. .++.++.-+++.-- +.+..++++.++|+.++++++
T Consensus 171 nIvgiKdssgd~--~~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l 248 (307)
T 3s5o_A 171 NIVGMXDSGGDV--TRIGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKL 248 (307)
T ss_dssp TEEEEEECSCCH--HHHHHHHHHTTTSSCEEEESSGGGHHHHHHHTCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEcCCCCH--HHHHHHHHhccCCCeEEEeCcHHHHHHHHHcCCCEEEechhhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 256666555543 233444433 25777665443110 112234566778888777655
Q ss_pred HHHH
Q 020005 274 LRIA 277 (332)
Q Consensus 274 l~~~ 277 (332)
..++
T Consensus 249 ~~~l 252 (307)
T 3s5o_A 249 QHRL 252 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 344
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=27.46 E-value=3e+02 Score=25.77 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechh
Q 020005 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (332)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~ 225 (332)
+.++-++.|.+.+-...++|||+|+ |+.-+.--...| -+.+-+.|+. .||.||+=..
T Consensus 142 ~ND~Tl~~La~~Als~A~AGAdiVA-PSdMMDGrV~aI---------------R~aLd~~G~~-------~~v~ImsYsa 198 (330)
T 1pv8_A 142 RAEESRQRLAEVALAYAKAGCQVVA-PSDMMDGRVEAI---------------KEALMAHGLG-------NRVSVMSYSA 198 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEE-ECC--CCHHHHH---------------HHHHHHTTCT-------TTCEEBCCCE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeee-cccccccHHHHH---------------HHHHHhCCCc-------CCceEeehhH
Confidence 3456677777777788899999654 776655543333 3445566663 2599999888
Q ss_pred hhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 226 ILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 226 T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
-..|.||.-.-...|=..-..|... ++ =+....++.++++...+ ++|||.|+.
T Consensus 199 KyASafYGPFRdAa~Sap~~GDRkt--------YQ----mdpaN~~EAlre~~~Di-~EGAD~vMV 251 (330)
T 1pv8_A 199 KFASCFYGPFRDAAKSSPAFGDRRC--------YQ----LPPGARGLALRAVDRDV-REGADMLMV 251 (330)
T ss_dssp ECCCGGGHHHHHCC-------------------------CCTTCHHHHHHHHHHHH-HTTCSBEEE
T ss_pred HHhHhhhhHHHHHHhcCCCCCCccc--------cC----CCCCCHHHHHHHHHhhH-HhCCceEEE
Confidence 8889999764333232211111100 11 01122456667666554 479997765
No 345
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=27.31 E-value=2.9e+02 Score=23.75 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCeEEecCccchh--hchHHHHHHHh--------
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATME--HTLIPALDALN-------- 263 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~--~~l~~~i~~ik-------- 263 (332)
|++-+++.+++.+.+ +| +++|. ...+.+.+.+.|++++.-.++.+. ..+..+...+.
T Consensus 29 li~~~l~~l~~~~~~--------~i-vVv~~----~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~d~vl 95 (252)
T 3oam_A 29 MIQWVYEQAMQAGAD--------RV-IIATD----DERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVV 95 (252)
T ss_dssp HHHHHHHHHHHTTCS--------EE-EEEES----CHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTSEEE
T ss_pred HHHHHHHHHHhCCCC--------eE-EEECC----HHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCCCEEE
Confidence 566777777776654 67 44553 245667777889988763322221 11333334441
Q ss_pred --cCChHH-HHHHHHHHHHHHHhCCCCEEEECC
Q 020005 264 --RKDVEG-ARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 264 --~g~~~~-a~~~l~~~~~~L~~~gad~VILGC 293 (332)
.|+.+- ....+..+++.+.+.++++.++++
T Consensus 96 v~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~ 128 (252)
T 3oam_A 96 NVQGDEPLIPPAIIRQVADNLAACSAPMATLAV 128 (252)
T ss_dssp ECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred EEeCCeeecCHHHHHHHHHHHHhcCCCEEEEee
Confidence 133211 245677777777777888777653
No 346
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=27.23 E-value=85 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 81 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 130 (297)
T 2rfg_A 81 PVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPII 130 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
No 347
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=27.17 E-value=82 Score=30.72 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
+.+.++.++++|+|.|++..-|
T Consensus 313 ~~~iA~~~~~aGaDgI~v~ntt 334 (443)
T 1tv5_A 313 KKEIADVLLETNIDGMIISNTT 334 (443)
T ss_dssp HHHHHHHHHHTTCSEEEECCCB
T ss_pred HHHHHHHHHHcCCCEEEEECCC
Confidence 4556778999999998775433
No 348
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=27.04 E-value=92 Score=28.45 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 97 t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPii 146 (304)
T 3cpr_A 97 TRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPIC 146 (304)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
No 349
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=26.82 E-value=1.6e+02 Score=27.90 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhC-CCCeee--ch-HHHHHHHHHhcCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGC-SVPFLH--VS-ECVAKELKEANMK 208 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~-~iPii~--Iv-e~t~~~l~~~g~k 208 (332)
+.++.+.++|+|+|.+-++.-|. +++.+++.. ++||+- +. .+.++.+.+.|.+
T Consensus 103 e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD 164 (361)
T 3r2g_A 103 QRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGAD 164 (361)
T ss_dssp HHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCC
Confidence 45677889999999885443222 245566654 566654 21 2233445555543
No 350
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=26.82 E-value=93 Score=28.61 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCee--e--------chHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFL--H--------VSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPii--~--------Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++..-.. -.+|.+|.+.+++||+ | +-.+++..+.+ .+ +
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------n 178 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK--VP-------N 178 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT--ST-------T
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc--CC-------C
Confidence 3455678899999987765321 1157888888899874 3 33455555553 21 2
Q ss_pred eEEEEechhhhchhhHHHHHHhc--CCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLR 275 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~ 275 (332)
-||+==|.+.+ ..+.+.++.. ++.++..+++.- .+.+..++++.++|+.+++++...
T Consensus 179 IvgiKdssgd~--~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~Ga~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~ 256 (314)
T 3qze_A 179 IIGIKEATGDL--QRAKEVIERVGKDFLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAIND 256 (314)
T ss_dssp EEEEEECSCCH--HHHHHHHHHSCTTSEEEESCGGGHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEcCCCCH--HHHHHHHHHcCCCeEEEecChHHHHHHHHCCCCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46665554443 2344544443 566665543211 011223356677888877765544
Q ss_pred HH
Q 020005 276 IA 277 (332)
Q Consensus 276 ~~ 277 (332)
++
T Consensus 257 ~l 258 (314)
T 3qze_A 257 RL 258 (314)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 351
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=26.81 E-value=85 Score=29.68 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNT 175 (332)
+.+.++.++++|||.|++..-|
T Consensus 236 ~~~ia~~~~~aGadgi~v~ntt 257 (367)
T 3zwt_A 236 KEDIASVVKELGIDGLIVTNTT 257 (367)
T ss_dssp HHHHHHHHHHHTCCEEEECCCB
T ss_pred HHHHHHHHHHcCCCEEEEeCCC
Confidence 4556778999999998865333
No 352
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=26.66 E-value=2e+02 Score=21.52 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=14.4
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLV 102 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~ 102 (332)
.++++.|+|+ |..... +.+.+.
T Consensus 5 ~~~~v~I~G~-G~iG~~-~a~~l~ 26 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGS-IVKELH 26 (144)
T ss_dssp -CCSEEEECC-SHHHHH-HHHHHH
T ss_pred cCCcEEEECC-CHHHHH-HHHHHH
Confidence 3678999987 888754 344443
No 353
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=26.58 E-value=2.4e+02 Score=23.63 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.+.++.+++.|+..|+|.++.-.+
T Consensus 148 i~~~~~ak~~G~~vIaIT~~~~s~ 171 (212)
T 2i2w_A 148 IKAIAAAREKGMKVITLTGKDGGK 171 (212)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCGG
T ss_pred HHHHHHHHHCCCeEEEEECCCCCc
Confidence 445567788899999998875333
No 354
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=26.47 E-value=85 Score=29.17 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii 192 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+
T Consensus 120 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPii 164 (332)
T 2r8w_A 120 ALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLA 164 (332)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4456778899999887554321 147888888888864
No 355
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=26.38 E-value=1.3e+02 Score=27.71 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=15.8
Q ss_pred cCeEEEEeCCChHHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLV 102 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~ 102 (332)
+.+|||| |.|..+...+.+.+.
T Consensus 5 ~~rigiI-G~G~~g~~~~~~~l~ 26 (359)
T 3m2t_A 5 LIKVGLV-GIGAQMQENLLPSLL 26 (359)
T ss_dssp CEEEEEE-CCSHHHHHTHHHHHH
T ss_pred cceEEEE-CCCHHHHHHHHHHHH
Confidence 3479999 688887655666654
No 356
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=26.33 E-value=2.7e+02 Score=25.52 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=54.8
Q ss_pred ccCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHH
Q 020005 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (332)
Q Consensus 79 ~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (332)
.+++|+|++ |-|. .++.|.+..... -.+..|+.|+|.....-...+- |+-.... ...+..+.-
T Consensus 104 ~~~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~gI-p~~~~~~----~~~~r~~~~--- 170 (302)
T 3o1l_A 104 QKKRVVLMASRESH-----CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDI-PYYHVPV----DPKDKEPAF--- 170 (302)
T ss_dssp SCCEEEEEECSCCH-----HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTTC-CEEECCC----CSSCCHHHH---
T ss_pred CCcEEEEEEeCCch-----hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcCC-CEEEcCC----CcCCHHHHH---
Confidence 466788886 6663 456666655432 3466777778877543222221 2111100 011211111
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+||++-.. +..=+++-+...-.+|||
T Consensus 171 ~~~~~~l~~~~~DliVlagym-~IL~~~~l~~~~~~~INi 209 (302)
T 3o1l_A 171 AEVSRLVGHHQADVVVLARYM-QILPPQLCREYAHQVINI 209 (302)
T ss_dssp HHHHHHHHHTTCSEEEESSCC-SCCCTTHHHHTTTCEEEE
T ss_pred HHHHHHHHHhCCCEEEHhHhh-hhcCHHHHhhhhCCeEEe
Confidence 123467889999999998763 443344444555566766
No 357
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=26.15 E-value=2.6e+02 Score=25.24 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 24 ~iD~~~l----~~lv~~li~~Gv~gl~~~GttGE~ 54 (297)
T 3flu_A 24 SIHYEQL----RDLIDWHIENGTDGIVAVGTTGES 54 (297)
T ss_dssp CBCHHHH----HHHHHHHHHTTCCEEEESSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEeCccccCc
Confidence 4566665 445568889999999999988654
No 358
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=26.14 E-value=82 Score=28.73 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++..-... .+|.+|.+.+++||+ ++-..++..+.+ .+ .
T Consensus 89 i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------n 159 (300)
T 3eb2_A 89 VAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAE--HP-------R 159 (300)
T ss_dssp HHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHT--ST-------T
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHc--CC-------C
Confidence 34456788999998777543211 157888888888874 344566666643 21 1
Q ss_pred eEEEEechhhhchhhHHHHHHhc--CCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHE--GFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLR 275 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~--Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~ 275 (332)
-||+==|.+.+ ..+.+.++.. ++.++..+++.- .+.+..++++.++|+.+++++...
T Consensus 160 IvgiKdssgd~--~~~~~~~~~~~~~f~v~~G~d~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~ 237 (300)
T 3eb2_A 160 IRYIKDASTNT--GRLLSIINRCGDALQVFSASAHIPAAVMLIGGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQR 237 (300)
T ss_dssp EEEEEECSSBH--HHHHHHHHHHGGGSEEEECTTSCHHHHHHTTCCEEEEGGGGTCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEcCCCCH--HHHHHHHHHcCCCeEEEeCcHHHHHHHHhCCCCEEEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46666555443 2234444332 566665443211 011223456777888877665443
No 359
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.09 E-value=2.4e+02 Score=22.97 Aligned_cols=24 Identities=0% Similarity=-0.236 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.+.++.+++.|+..|+|.++.-.+
T Consensus 126 i~~~~~ak~~g~~vI~IT~~~~s~ 149 (196)
T 2yva_A 126 VKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCCch
Confidence 345567788899999998876444
No 360
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=26.07 E-value=3.6e+02 Score=24.57 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=11.4
Q ss_pred HHHHHHhCCCCEEEECC
Q 020005 277 ALQVLLVRAVNTVILAS 293 (332)
Q Consensus 277 ~~~~L~~~gad~VILGC 293 (332)
.++...+.|++.++.|-
T Consensus 242 ~v~~ai~aGA~Gv~vGR 258 (295)
T 3glc_A 242 MCWQAIDQGASGVDMGR 258 (295)
T ss_dssp HHHHHHHTTCSEEEESH
T ss_pred HHHHHHHhCCeEEEeHH
Confidence 33344467999998884
No 361
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=25.96 E-value=72 Score=29.53 Aligned_cols=61 Identities=18% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCcEEEEeCC------C-----------chhhHHHHhhhCCCCeee-----chHHHHHHHHHhcCCCCcCC
Q 020005 156 RKRVFLEKAGARCIVMPCH------L-----------SHIWHDEVCKGCSVPFLH-----VSECVAKELKEANMKPLEAG 213 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CN------T-----------aH~~~d~l~~~~~iPii~-----Ive~t~~~l~~~g~k~~~~~ 213 (332)
+.++.++++|||+|++... | .-..+.++++.+++|||- -.+-+++.+ ..|.
T Consensus 161 e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kal-alGA------ 233 (336)
T 1ypf_A 161 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSI-RFGA------ 233 (336)
T ss_dssp HHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHH-HTTC------
T ss_pred HHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH-HcCC------
Confidence 4677899999999999321 1 011256666777888886 133344443 3565
Q ss_pred CCceEEEEechhh
Q 020005 214 SPLRIGVLAKNAI 226 (332)
Q Consensus 214 ~~~rVGlLaT~~T 226 (332)
....+||...
T Consensus 234 ---daV~iGr~~l 243 (336)
T 1ypf_A 234 ---TMVMIGSLFA 243 (336)
T ss_dssp ---SEEEESGGGT
T ss_pred ---CEEEeChhhh
Confidence 4666777554
No 362
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=25.92 E-value=1.1e+02 Score=29.86 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCcEEEE
Q 020005 156 RKRVFLEKAGARCIVM 171 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI 171 (332)
+.++.|+++|||+|.+
T Consensus 282 e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 282 EAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3467799999999998
No 363
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=25.90 E-value=95 Score=28.42 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=8.3
Q ss_pred eEEEEeCCChHHHHHHH
Q 020005 82 TVGIVGGASVDSTLNLL 98 (332)
Q Consensus 82 ~IGIiGGmGp~AT~~~y 98 (332)
.+|.+|| |...+.|+
T Consensus 133 lig~~~~--P~tla~~l 147 (338)
T 2eja_A 133 VIGFAGA--PFTLLSYL 147 (338)
T ss_dssp EEEEEEC--HHHHHHHH
T ss_pred EEEecch--HHHHHHHH
Confidence 5666654 66655443
No 364
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=25.89 E-value=1.5e+02 Score=28.97 Aligned_cols=53 Identities=23% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhhhC-CCCeee---chHHHHHHHHHhcCC
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGC-SVPFLH---VSECVAKELKEANMK 208 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-----~~d~l~~~~-~iPii~---Ive~t~~~l~~~g~k 208 (332)
+.++.|.++|+|+|++-+..-|. ++.++++.+ ++|++- ...+.++.+.+.|.+
T Consensus 232 ~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD 293 (490)
T 4avf_A 232 ERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGAD 293 (490)
T ss_dssp HHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCC
Confidence 34567888999999986554442 356677776 677632 223344666677764
No 365
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=25.63 E-value=3.5e+02 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=13.2
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLV 102 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~ 102 (332)
.+.+|||| |.|..+.. +.+.+.
T Consensus 12 ~~~rvgii-G~G~~g~~-~~~~l~ 33 (354)
T 3q2i_A 12 RKIRFALV-GCGRIANN-HFGALE 33 (354)
T ss_dssp SCEEEEEE-CCSTTHHH-HHHHHH
T ss_pred CcceEEEE-cCcHHHHH-HHHHHH
Confidence 35689999 56766653 334443
No 366
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=25.62 E-value=81 Score=28.61 Aligned_cols=116 Identities=10% Similarity=0.164 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCce
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPLR 217 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~r 217 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+ ++-..++..+.+ ++ .-
T Consensus 88 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~p-------ni 158 (292)
T 3daq_A 88 QASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ--HP-------YI 158 (292)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT--ST-------TE
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc--CC-------CE
Confidence 4456788899998877653211 157888888888874 334455555554 21 14
Q ss_pred EEEEechhhhchhhHHHHHHhc---CCeEEecCccchh-------------------hchHHHHHHHhcC-ChHHHHHHH
Q 020005 218 IGVLAKNAILTAGFYQEKLQHE---GFEVVLPDKATME-------------------HTLIPALDALNRK-DVEGARNLL 274 (332)
Q Consensus 218 VGlLaT~~T~~s~lY~~~l~~~---Gi~vv~P~~~~q~-------------------~~l~~~i~~ik~g-~~~~a~~~l 274 (332)
||+=-|.+.+ ..+++.++.. ++.++..+++.-- +.+..+++..++| +.+++++.+
T Consensus 159 vgiK~ssgd~--~~~~~~~~~~~~~~f~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~g~d~~~A~~~l 236 (292)
T 3daq_A 159 VALKDATNDF--EYLEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPI 236 (292)
T ss_dssp EEEEECCCCH--HHHHHHHTTSCTTTSEEEESCGGGHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EEEEeCCCCH--HHHHHHHHHCCCCCEEEEECCHHHHHHHHhcCCCEEEeCHHHhhHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665555543 2344544433 3666654443110 1122335667788 887776655
Q ss_pred HHHHHHHH
Q 020005 275 RIALQVLL 282 (332)
Q Consensus 275 ~~~~~~L~ 282 (332)
....+.+.
T Consensus 237 ~~l~~~~~ 244 (292)
T 3daq_A 237 GTLLSALS 244 (292)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55554443
No 367
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=25.49 E-value=95 Score=28.98 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 112 t~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPii 161 (343)
T 2v9d_A 112 ARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVM 161 (343)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
No 368
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=25.47 E-value=73 Score=28.94 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-h--------hhHHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLS-H--------IWHDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTa-H--------~~~d~l~~~~~iPii 192 (332)
+.++..++.|||++++..-.. . .+|.+|.+.+++||+
T Consensus 82 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPii 127 (293)
T 1w3i_A 82 RLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVY 127 (293)
T ss_dssp HHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 445667889999877644322 1 147888888888864
No 369
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=25.44 E-value=88 Score=29.25 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc---hhhHHHHhhhCCCC-----eeechHHHHHHHHHhcCCCCcCCCCceEEEEechhh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa---H~~~d~l~~~~~iP-----ii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T 226 (332)
.+.++.|++.|..++++.-|+. ....+.+++..++| |+.-..+++..+. ..++|-++|+.+
T Consensus 35 ~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~~~i~ts~~~~~~~~~----------~~~~v~viG~~~- 103 (352)
T 3kc2_A 35 SDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSPLQIIQSHTPYKSLVN----------KYSRILAVGTPS- 103 (352)
T ss_dssp HHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCCGGGEECTTGGGGGGTT----------TCSEEEEESSTT-
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCChhhEeehHHHHHHHHh----------cCCEEEEECCHH-
Confidence 4456789999999999888853 44567777656665 3333333333221 124899999863
Q ss_pred hchhhHHHHHHhcCCeEEe
Q 020005 227 LTAGFYQEKLQHEGFEVVL 245 (332)
Q Consensus 227 ~~s~lY~~~l~~~Gi~vv~ 245 (332)
..+.+++.|++.+.
T Consensus 104 -----l~~~l~~~G~~~v~ 117 (352)
T 3kc2_A 104 -----VRGVAEGYGFQDVV 117 (352)
T ss_dssp -----HHHHHHHHTCSEEE
T ss_pred -----HHHHHHhCCCeEec
Confidence 35677888999874
No 370
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=25.44 E-value=1.8e+02 Score=25.30 Aligned_cols=100 Identities=9% Similarity=0.097 Sum_probs=52.2
Q ss_pred hhccCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcchh--hhhhcCCCchhhccccCCCCCCCHHHH
Q 020005 77 LNQANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNK--ELLSHDRSSFSSLNCKGGGVQLDDSLI 150 (332)
Q Consensus 77 ~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip~--~ll~~~~~~~~~~~~~~~~~~~d~~~i 150 (332)
|+.+++|+|+- |-|. +++.|.+..... ..+..|+.+.|...- +-..++- |+-... ..+...
T Consensus 5 ~~~~~ri~vl~SG~gs-----nl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gI-p~~~~~------~~~~~~- 71 (215)
T 3kcq_A 5 MKKELRVGVLISGRGS-----NLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGI-PTFVVK------RKPLDI- 71 (215)
T ss_dssp --CCEEEEEEESSCCH-----HHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTC-CEEECC------BTTBCH-
T ss_pred CCCCCEEEEEEECCcH-----HHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCC-CEEEeC------cccCCh-
Confidence 34567888874 6665 456676666543 234445555555431 2122221 111100 011100
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+|+++... +..=+++-+...-.+||+
T Consensus 72 ----~~~~~~L~~~~~Dlivlagy~-~IL~~~~l~~~~~~~iNi 110 (215)
T 3kcq_A 72 ----EHISTVLREHDVDLVCLAGFM-SILPEKFVTDWHHKIINI 110 (215)
T ss_dssp ----HHHHHHHHHTTCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred ----HHHHHHHHHhCCCEEEEeCCc-eEeCHHHHhhccCCeEEE
Confidence 233467889999999998764 544455555566667776
No 371
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=25.41 E-value=3.3e+02 Score=23.60 Aligned_cols=107 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEE--EEeCCCchh--------hHHHHhhhCCCCee----------------echHHHHHHHHHhcCCCCc
Q 020005 158 RVFLEKAGARCI--VMPCHLSHI--------WHDEVCKGCSVPFL----------------HVSECVAKELKEANMKPLE 211 (332)
Q Consensus 158 ~~~Le~~Gad~I--vI~CNTaH~--------~~d~l~~~~~iPii----------------~Ive~t~~~l~~~g~k~~~ 211 (332)
++...+.|+|.| .+-...... -+-++....++|++ +.++.+++.+.+.|.+
T Consensus 105 v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad--- 181 (273)
T 2qjg_A 105 VEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD--- 181 (273)
T ss_dssp HHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS---
T ss_pred HHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC---
Q ss_pred CCCCceEEEEechhhhchhhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 212 AGSPLRIGVLAKNAILTAGFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 212 ~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
++++..+..-..+++..+..++.++.-. |.-....+.+.+.+..+.+.|++.|..
T Consensus 182 --------~i~~~~~~~~~~l~~i~~~~~ipvva~G-----------------Gi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 182 --------IVKTSYTGDIDSFRDVVKGCPAPVVVAG-----------------GPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp --------EEEECCCSSHHHHHHHHHHCSSCEEEEC-----------------CSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred --------EEEECCCCCHHHHHHHHHhCCCCEEEEe-----------------CCCCCCHHHHHHHHHHHHHcCCcEEEe
Q ss_pred C
Q 020005 292 A 292 (332)
Q Consensus 292 G 292 (332)
|
T Consensus 237 g 237 (273)
T 2qjg_A 237 G 237 (273)
T ss_dssp C
T ss_pred e
No 372
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=25.39 E-value=1.1e+02 Score=23.75 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH---HHhhhCCCCeeec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHD---EVCKGCSVPFLHV 194 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d---~l~~~~~iPii~I 194 (332)
+..+.+++..+.+++++.|+...... .+.+..++|+++.
T Consensus 33 ~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 33 TVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHF 74 (112)
T ss_dssp HHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECC
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 45567888889999999999765544 4456678999887
No 373
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.29 E-value=2.5e+02 Score=22.19 Aligned_cols=86 Identities=12% Similarity=0.222 Sum_probs=50.5
Q ss_pred chHHHHHHHHHhcCCCCcCCCCceEEEEechhhhch-hhHHHHHHhcCCeEEecCccchhhchHHHHHHHhcC--Ch---
Q 020005 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA-GFYQEKLQHEGFEVVLPDKATMEHTLIPALDALNRK--DV--- 267 (332)
Q Consensus 194 Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s-~lY~~~l~~~Gi~vv~P~~~~q~~~l~~~i~~ik~g--~~--- 267 (332)
|..+.+++++..|. ||.+|.+..--+. +---+.+++.|+.+-..... + .+..-|.+|... +.
T Consensus 14 ilkeivreikrqgv---------rvvllysdqdekrrrerleefekqgvdvrtvedk--e-dfrenireiwerypqldvv 81 (162)
T 2l82_A 14 ILKEIVREIKRQGV---------RVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDK--E-DFRENIREIWERYPQLDVV 81 (162)
T ss_dssp HHHHHHHHHHHTTC---------EEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSH--H-HHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCe---------EEEEEecCchHHHHHHHHHHHHHcCCceeeeccH--H-HHHHHHHHHHHhCCCCcEE
Confidence 45677788888876 7888887654322 22224567789988664321 1 122223333211 10
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCEEEE
Q 020005 268 ----EGARNLLRIALQVLLVRAVNTVIL 291 (332)
Q Consensus 268 ----~~a~~~l~~~~~~L~~~gad~VIL 291 (332)
...++-++..++...++|+++.+.
T Consensus 82 vivttddkewikdfieeakergvevfvv 109 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKERGVEVFVV 109 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEecCcHHHHHHHHHHHHhcCcEEEEE
Confidence 123566777788888899987764
No 374
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=25.11 E-value=46 Score=28.80 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=41.2
Q ss_pred HHHHHcCCcEEEEeCCCchhh------HHHHhh-hCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhh
Q 020005 159 VFLEKAGARCIVMPCHLSHIW------HDEVCK-GCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF 231 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~------~d~l~~-~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~l 231 (332)
+.|++.|+++.-+++....+. .+.++. ..++=++. -..+++.+.+.- + .....++..+|- .
T Consensus 127 ~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ft-S~s~v~~~~~~~-~---~~~~~~~~aIG~-------~ 194 (229)
T 3p9z_A 127 TILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFT-AISHAKAFLHYF-E---FLENYTAISIGN-------T 194 (229)
T ss_dssp HHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEEC-SHHHHHHHHHHS-C---CCTTCEEEESSH-------H
T ss_pred HHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEE-CHHHHHHHHHHh-C---cccCCEEEEECH-------H
Confidence 467888988877776654332 123322 12222222 234445554431 0 012224444443 2
Q ss_pred HHHHHHhcCCeEEecCccchh
Q 020005 232 YQEKLQHEGFEVVLPDKATME 252 (332)
Q Consensus 232 Y~~~l~~~Gi~vv~P~~~~q~ 252 (332)
-.+.++++|+++++|+....+
T Consensus 195 Ta~~l~~~G~~v~va~~~~~e 215 (229)
T 3p9z_A 195 TALYLQEQGIPSYIAKKPSLE 215 (229)
T ss_dssp HHHHHHHTTCCEEECSSSSHH
T ss_pred HHHHHHHcCCCceeCCCCCHH
Confidence 356678889888777655433
No 375
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=25.04 E-value=3.1e+02 Score=24.48 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHhhhCCCCeeech----------HHHHHHHHHhcCCCCcCCCCceEEEEechhhhc-hhhHHHHHHhcCCeEE
Q 020005 180 HDEVCKGCSVPFLHVS----------ECVAKELKEANMKPLEAGSPLRIGVLAKNAILT-AGFYQEKLQHEGFEVV 244 (332)
Q Consensus 180 ~d~l~~~~~iPii~Iv----------e~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~-s~lY~~~l~~~Gi~vv 244 (332)
..++++..++|++-|. +.-++.+.+.|.+ |++.-+.+.+ ..-|.+.+.++|++.+
T Consensus 83 v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~d----------Gviv~Dl~~ee~~~~~~~~~~~gl~~i 148 (271)
T 1ujp_A 83 VREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGAT----------GVILPDLPPDEDPGLVRLAQEIGLETV 148 (271)
T ss_dssp HHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCC----------EEECTTCCGGGCHHHHHHHHHHTCEEE
T ss_pred HHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCC----------EEEecCCCHHHHHHHHHHHHHcCCceE
Confidence 5677777788887753 2233445555542 4554444432 3446666777776543
No 376
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=24.96 E-value=3.8e+02 Score=24.05 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=35.8
Q ss_pred EEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHc
Q 020005 85 IVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKA 164 (332)
Q Consensus 85 IiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~ 164 (332)
+=.|+...-..+..+++.+.. -+.|+++...- ||.... . +.+-++.+.++
T Consensus 75 L~~G~~~~~~~~~v~~~r~~~---~~~Pivlm~Y~-----------n~v~~~---------g-------~~~f~~~~~~a 124 (271)
T 3nav_A 75 LAAKTTPDICFELIAQIRARN---PETPIGLLMYA-----------NLVYAR---------G-------IDDFYQRCQKA 124 (271)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC---TTSCEEEEECH-----------HHHHHT---------C-------HHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhcC---CCCCEEEEecC-----------cHHHHH---------h-------HHHHHHHHHHC
Confidence 335788877777777766441 26788775411 111000 0 23345678899
Q ss_pred CCcEEEEeCCC
Q 020005 165 GARCIVMPCHL 175 (332)
Q Consensus 165 Gad~IvI~CNT 175 (332)
|+|.+++|--+
T Consensus 125 GvdGvIipDlp 135 (271)
T 3nav_A 125 GVDSVLIADVP 135 (271)
T ss_dssp TCCEEEETTSC
T ss_pred CCCEEEECCCC
Confidence 99999997443
No 377
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=24.90 E-value=1e+02 Score=28.83 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhH
Q 020005 157 KRVFLEKAGARCIVMPCHLSHIWH 180 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTaH~~~ 180 (332)
+.++.++.|+|+++++--|+|-.|
T Consensus 158 a~~Fv~~TgvD~LAvaiGt~HG~Y 181 (323)
T 2isw_A 158 AKKFVELTGVDALAVAIGTSHGAY 181 (323)
T ss_dssp HHHHHHHHCCSEEEECSSCCSSSB
T ss_pred HHHHHHHHCCCEEEEecCcccccc
Confidence 345677889999999999999754
No 378
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.71 E-value=3.6e+02 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHhcCCCCcC------CCCceEEEEechhhhchhhH-------HHHHHhcCCeEEe
Q 020005 201 ELKEANMKPLEA------GSPLRIGVLAKNAILTAGFY-------QEKLQHEGFEVVL 245 (332)
Q Consensus 201 ~l~~~g~k~~~~------~~~~rVGlLaT~~T~~s~lY-------~~~l~~~Gi~vv~ 245 (332)
.+++.|+.|... ++.++||++-... ...+| ++.++++|+.+++
T Consensus 48 ~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~ 103 (344)
T 3kjx_A 48 AAKELGYVPNKIAGALASNRVNLVAVIIPSL--SNMVFPEVLTGINQVLEDTELQPVV 103 (344)
T ss_dssp HHHHHTCCCCCCCSCSTTSCCSEEEEEESCS--SSSSHHHHHHHHHHHHTSSSSEEEE
T ss_pred HHHHhCCCCCHHHHHhhcCCCCEEEEEeCCC--CcHHHHHHHHHHHHHHHHCCCEEEE
Confidence 355667765442 2346799987532 22333 3445566888765
No 379
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.63 E-value=88 Score=28.34 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 85 t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPii 134 (293)
T 1f6k_A 85 LKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMI 134 (293)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
No 380
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=24.58 E-value=3.8e+02 Score=24.01 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCCEEEECCC
Q 020005 272 NLLRIALQVLLVRAVNTVILASD 294 (332)
Q Consensus 272 ~~l~~~~~~L~~~gad~VILGCT 294 (332)
+.+.++++.+.+.|+|.|.|+=|
T Consensus 159 ~~~~~~~~~~~~~G~d~i~l~DT 181 (302)
T 2ftp_A 159 RQVAWVARELQQMGCYEVSLGDT 181 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC
Confidence 45666677777889998888733
No 381
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=24.57 E-value=2e+02 Score=25.86 Aligned_cols=22 Identities=5% Similarity=0.079 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcC-CcEEEEeCCC
Q 020005 154 LRRKRVFLEKAG-ARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~~G-ad~IvI~CNT 175 (332)
+.+.++.++++| +|+|.+..-|
T Consensus 176 ~~~~a~~~~~aG~~d~i~v~~~~ 198 (314)
T 2e6f_A 176 FDTAAAVLNEFPLVKFVTCVNSV 198 (314)
T ss_dssp HHHHHHHHHTCTTEEEEEECCCE
T ss_pred HHHHHHHHHhcCCceEEEEeCCC
Confidence 344567889999 9999887644
No 382
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=24.36 E-value=65 Score=29.86 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH--------HHHH--HHHHhcCCCCcCCCCceEEEEec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE--------CVAK--ELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive--------~t~~--~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
+.+.++-|.+. +|+|+|=... |..++++.+.+++||||..+ +.++ .+++..- + -.+.+|+++|-
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~la~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g-~---l~gl~va~vGD 163 (308)
T 1ml4_A 90 LRDTIKTVEQY-CDVIVIRHPK-EGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFG-R---IDGLKIGLLGD 163 (308)
T ss_dssp HHHHHHHHTTT-CSEEEEEESS-TTHHHHHHHTCSSCEEEEEETTSCCHHHHHHHHHHHHHHSS-C---SSSEEEEEESC
T ss_pred HHHHHHHHHHh-CcEEEEecCC-hhHHHHHHHhCCCCEEeCccCCccCcHHHHHHHHHHHHHhC-C---CCCeEEEEeCC
Confidence 55667778877 7999998774 77889999999999999865 1221 1333211 1 13458999996
Q ss_pred h---hhhchhhHHHHHHhcCCeEEecC
Q 020005 224 N---AILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 224 ~---~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
- .+.. -+-..+...|+++.+-.
T Consensus 164 ~~~~rva~--Sl~~~~~~~G~~v~~~~ 188 (308)
T 1ml4_A 164 LKYGRTVH--SLAEALTFYDVELYLIS 188 (308)
T ss_dssp TTTCHHHH--HHHHHGGGSCEEEEEEC
T ss_pred CCcCchHH--HHHHHHHHCCCEEEEEC
Confidence 3 2333 23345666798876633
No 383
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=24.26 E-value=1.7e+02 Score=23.53 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=44.4
Q ss_pred hhhhccCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 75 ALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 75 ~~~~~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
..+...+.|-++| |-+..++.++..++.+.. .+....+++..+. + ...|.+-... ..+.-.+
T Consensus 35 ~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-----~~~~~~~~~~~~~--~-~~~d~vi~iS-----~sG~t~~---- 97 (180)
T 1jeo_A 35 DRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLG-----FKSYFVGETTTPS--Y-EKDDLLILIS-----GSGRTES---- 97 (180)
T ss_dssp HHHHHCSSEEEECCHHHHHHHHHHHHHHHHTT-----CCEEETTSTTCCC--C-CTTCEEEEEE-----SSSCCHH----
T ss_pred HHHHhCCEEEEEeecHHHHHHHHHHHHHHHcC-----CeEEEeCCCcccc--C-CCCCEEEEEe-----CCCCcHH----
Confidence 4455678899997 655566667777776432 2222222221100 0 0011111110 0111122
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSH 177 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH 177 (332)
+.+.++.+++.|+..|+|.++.-.
T Consensus 98 ~~~~~~~ak~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 98 VLTVAKKAKNINNNIIAIVCECGN 121 (180)
T ss_dssp HHHHHHHHHTTCSCEEEEESSCCG
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCh
Confidence 345567788999999999998644
No 384
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=24.24 E-value=84 Score=29.40 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCC---C------chhhHHHHhhhCCCCeeechHH-------HHHH--HHHh-cCCCCcCCC
Q 020005 154 LRRKRVFLEKAGARCIVMPCH---L------SHIWHDEVCKGCSVPFLHVSEC-------VAKE--LKEA-NMKPLEAGS 214 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CN---T------aH~~~d~l~~~~~iPii~Ive~-------t~~~--l~~~-g~k~~~~~~ 214 (332)
+.+.++-|.+. +|+|+|=+. + .|..++++.+.+++||||..+. .+.. +++. |.++ -.
T Consensus 93 l~DTarvLs~y-~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~---l~ 168 (324)
T 1js1_X 93 LLEAIPVMGCY-CDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTAR---PK 168 (324)
T ss_dssp HHHHHHHHHHT-CSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHHHHHHCSSSS---CE
T ss_pred HHHHHHHHHHh-CcEEEEecccccccccccccchHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHcCCCC---ee
Confidence 45666788888 799999765 1 4777899999999999997552 2221 3332 2000 12
Q ss_pred CceEEE-----EechhhhchhhHHHHHHhcCCeEEecC
Q 020005 215 PLRIGV-----LAKNAILTAGFYQEKLQHEGFEVVLPD 247 (332)
Q Consensus 215 ~~rVGl-----LaT~~T~~s~lY~~~l~~~Gi~vv~P~ 247 (332)
.+|++ +|-..+..| +-..+...|+++.+-.
T Consensus 169 -l~ia~a~~~~vGD~rva~S--l~~~~~~~G~~v~~~~ 203 (324)
T 1js1_X 169 -VVMTWAPHPRPLPQAVPNS--FAEWMNATDYEFVITH 203 (324)
T ss_dssp -EEEECCCCSSCCCSHHHHH--HHHHHHTSSSEEEEEC
T ss_pred -EEEEEEcccccCCcchHHH--HHHHHHHCCCEEEEeC
Confidence 47888 887444433 3455777898887633
No 385
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=24.19 E-value=3e+02 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=14.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKL 101 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI 101 (332)
+.+|||| |.|..+...+.+.+
T Consensus 6 ~~~igiI-G~G~~g~~~~~~~l 26 (308)
T 3uuw_A 6 NIKMGMI-GLGSIAQKAYLPIL 26 (308)
T ss_dssp CCEEEEE-CCSHHHHHHTHHHH
T ss_pred cCcEEEE-ecCHHHHHHHHHHH
Confidence 4589999 67887765444444
No 386
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=24.16 E-value=2.2e+02 Score=25.91 Aligned_cols=102 Identities=8% Similarity=-0.017 Sum_probs=53.9
Q ss_pred ccCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecC-CcchhhhhhcCCCchhhccccCCCCCCCHHHHHHH
Q 020005 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSD-PLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVEN 153 (332)
Q Consensus 79 ~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~-p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~ 153 (332)
.+++|+|+. |-|. -++.|.+..... -.+..|+.|+ |.+..+-..++- |+-... ....+..+.-
T Consensus 88 ~~~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gI-p~~~~~----~~~~~r~~~~-- 155 (288)
T 3obi_A 88 TRRKVMLLVSQSDH-----CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDI-PFYHFP----VNKDTRRQQE-- 155 (288)
T ss_dssp SCEEEEEEECSCCH-----HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTC-CEEECC----CCTTTHHHHH--
T ss_pred CCcEEEEEEcCCCC-----CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCC-CEEEeC----CCcccHHHHH--
Confidence 356788875 7775 445555555432 2466677777 555332111121 111110 0111222211
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+|+++... +..=+++-+...-.+||+
T Consensus 156 -~~~~~~l~~~~~Dlivlagy~-~il~~~~l~~~~~~~iNi 194 (288)
T 3obi_A 156 -AAITALIAQTHTDLVVLARYM-QILSDEMSARLAGRCINI 194 (288)
T ss_dssp -HHHHHHHHHHTCCEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred -HHHHHHHHhcCCCEEEhhhhh-hhCCHHHHhhhcCCeEEe
Confidence 233467888999999998763 554455555566667776
No 387
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=24.12 E-value=1.5e+02 Score=29.54 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc-----------hhhHHHHhhhCCCCee---echH------------HHHHHHHHhcCC
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS-----------HIWHDEVCKGCSVPFL---HVSE------------CVAKELKEANMK 208 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa-----------H~~~d~l~~~~~iPii---~Ive------------~t~~~l~~~g~k 208 (332)
.+.++.++++|||.+.+.--++ ...+.++.+.+.+|++ +|-+ +.++.+.+.|.+
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad 362 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD 362 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCC
Confidence 4567788999999886652222 1235777778899998 6644 446777777764
Q ss_pred CCcCCCCceEEEEechhhhc-------------hhhHHHHHHhcC
Q 020005 209 PLEAGSPLRIGVLAKNAILT-------------AGFYQEKLQHEG 240 (332)
Q Consensus 209 ~~~~~~~~rVGlLaT~~T~~-------------s~lY~~~l~~~G 240 (332)
.-+++|....+ ..+.++..+++|
T Consensus 363 ---------~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 398 (555)
T 1jvn_A 363 ---------KVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYG 398 (555)
T ss_dssp ---------EEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHC
T ss_pred ---------EEEECCHHhhCchhhccccccccCHHHHHHHHHHhC
Confidence 55778765321 356777777777
No 388
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=24.09 E-value=3.9e+02 Score=23.88 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=35.6
Q ss_pred EeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 020005 86 VGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAG 165 (332)
Q Consensus 86 iGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~G 165 (332)
-.|+......+..+++.+.. -+.|+++...- ||.... -+.+-++.+.++|
T Consensus 74 ~~G~~~~~~~~~v~~ir~~~---~~~Pivlm~Y~-----------npv~~~----------------g~e~f~~~~~~aG 123 (267)
T 3vnd_A 74 AAGTTSSDCFDIITKVRAQH---PDMPIGLLLYA-----------NLVFAN----------------GIDEFYTKAQAAG 123 (267)
T ss_dssp HTTCCHHHHHHHHHHHHHHC---TTCCEEEEECH-----------HHHHHH----------------CHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhcC---CCCCEEEEecC-----------cHHHHh----------------hHHHHHHHHHHcC
Confidence 35888888788888876541 15677764310 111000 0233356788999
Q ss_pred CcEEEEeCCC
Q 020005 166 ARCIVMPCHL 175 (332)
Q Consensus 166 ad~IvI~CNT 175 (332)
+|.+++|--.
T Consensus 124 vdgvii~Dlp 133 (267)
T 3vnd_A 124 VDSVLIADVP 133 (267)
T ss_dssp CCEEEETTSC
T ss_pred CCEEEeCCCC
Confidence 9999997443
No 389
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=23.95 E-value=2.9e+02 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 29 ~iD~~~l----~~lv~~li~~Gv~gl~v~GtTGE~ 59 (301)
T 1xky_A 29 NIDFAKT----TKLVNYLIDNGTTAIVVGGTTGES 59 (301)
T ss_dssp SBCHHHH----HHHHHHHHHTTCCEEEESSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECccccCh
Confidence 4566665 445568889999999998887544
No 390
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=23.70 E-value=66 Score=24.52 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCee
Q 020005 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL 192 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii 192 (332)
+..++.++|.|||....- ...+.+-..+++|++
T Consensus 103 ~~a~~~~~dliV~G~~g~-sv~~~vl~~a~~PVl 135 (138)
T 1q77_A 103 KFVEGKGYELVVWACYPS-AYLCKVIDGLNLASL 135 (138)
T ss_dssp HHHTTSCCSEEEECSCCG-GGTHHHHHHSSSEEE
T ss_pred HHHHhcCCCEEEEeCCCC-chHHHHHHhCCCceE
Confidence 345567899999988753 445666666677765
No 391
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=23.63 E-value=1.9e+02 Score=25.32 Aligned_cols=76 Identities=28% Similarity=0.263 Sum_probs=51.7
Q ss_pred HHHHHHHcCCcEEEEeCCCc--------hhhHHHHhhhCCCCe-----eechHHHHHHHHHhcCCCCcCCCCceEEEEec
Q 020005 157 KRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPF-----LHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (332)
Q Consensus 157 ~~~~Le~~Gad~IvI~CNTa--------H~~~d~l~~~~~iPi-----i~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT 223 (332)
.++.+++.|||-+.+---++ ..+.+++.+.+.+|+ |.-. +.++.+.+.|.. || +++|
T Consensus 36 ~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~-e~~~~~l~~Gad--------kV-ii~t 105 (243)
T 4gj1_A 36 KFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSK-EEVKALLDCGVK--------RV-VIGS 105 (243)
T ss_dssp HHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHCCSEEEEESSCCCH-HHHHHHHHTTCS--------EE-EECT
T ss_pred HHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhcCCCeEeccccccH-HHHHHHHHcCCC--------EE-EEcc
Confidence 35668889999877653322 234677888888886 2223 344566677765 66 6788
Q ss_pred hhhhchhhHHHHHHhcCCe
Q 020005 224 NAILTAGFYQEKLQHEGFE 242 (332)
Q Consensus 224 ~~T~~s~lY~~~l~~~Gi~ 242 (332)
...-...+..+..+.+|-+
T Consensus 106 ~a~~~p~li~e~~~~~g~q 124 (243)
T 4gj1_A 106 MAIKDATLCLEILKEFGSE 124 (243)
T ss_dssp TTTTCHHHHHHHHHHHCTT
T ss_pred ccccCCchHHHHHhcccCc
Confidence 8877888888888888744
No 392
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=23.61 E-value=26 Score=33.50 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.4
Q ss_pred cCeEEEEe-CCChHHHHHHHHHH
Q 020005 80 ANTVGIVG-GASVDSTLNLLGKL 101 (332)
Q Consensus 80 ~k~IGIiG-GmGp~AT~~~y~kI 101 (332)
||+|-||| |++.++++.++.+-
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~ 23 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA 23 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT
T ss_pred CCCEEEECCcHHHHHHHHHHHHC
Confidence 78999999 99999999888763
No 393
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.61 E-value=2.5e+02 Score=25.45 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 32 ~iD~~~l----~~lv~~li~~Gv~gi~v~GttGE~ 62 (304)
T 3l21_A 32 SLDTATA----ARLANHLVDQGCDGLVVSGTTGES 62 (304)
T ss_dssp CBCHHHH----HHHHHHHHHTTCSEEEESSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEeCccccch
Confidence 4566665 445568889999999999988654
No 394
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=23.33 E-value=74 Score=30.78 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=45.8
Q ss_pred eEEEEechhhhchhhHHHHHHhcCCeEEecC----------------ccchh---hchHHHHHHHhc-CChHHHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQHEGFEVVLPD----------------KATME---HTLIPALDALNR-KDVEGARNLLRI 276 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~~Gi~vv~P~----------------~~~q~---~~l~~~i~~ik~-g~~~~a~~~l~~ 276 (332)
-|.|.|.+|+=++.+-.+..+..+.+++..| .+++. +-+++..+ ... -...+-.+....
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~-~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVD-WSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBC-TTSCCCHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccC-hHhHhhHHHHHHHHHH
Confidence 5788999888787777666666676665432 22221 11111110 100 011112344456
Q ss_pred HHHHHHhCCCCEEEECCCCcc
Q 020005 277 ALQVLLVRAVNTVILASDDMQ 297 (332)
Q Consensus 277 ~~~~L~~~gad~VILGCTElp 297 (332)
+++.+.++|--.|+.|.|.|=
T Consensus 83 ~i~~i~~~g~~pilVGGTglY 103 (409)
T 3eph_A 83 AIEDIHRRGKIPIVVGGTHYY 103 (409)
T ss_dssp HHHHHHTTTCEEEEECSCGGG
T ss_pred HHHHHHhcCCCEEEECChHHH
Confidence 667777788889999999984
No 395
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=23.05 E-value=1.4e+02 Score=27.65 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHH-Hc------CCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 149 LIVENLRRKRVFLE-KA------GARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 149 ~i~~~l~~~~~~Le-~~------Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
-+.+++.+.++.+. +. |+-.|..+|++ ..+++.+.+ +++-++++.
T Consensus 232 f~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~~~l~~l~~-~g~d~i~~d 283 (367)
T 1r3s_A 232 FALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-HFALEELAQ-AGYEVVGLD 283 (367)
T ss_dssp HTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-GGGHHHHTT-SSCSEEECC
T ss_pred HhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-HHHHHHHHh-cCCCEEEeC
Confidence 45667777778887 66 68899999999 777788865 567777763
No 396
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=22.99 E-value=3.9e+02 Score=23.50 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=61.3
Q ss_pred cCCcEEEEeCCCchhhH-HHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhchhhHHHHHHhcCCe
Q 020005 164 AGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEGFE 242 (332)
Q Consensus 164 ~Gad~IvI~CNTaH~~~-d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~s~lY~~~l~~~Gi~ 242 (332)
....+|+.|--...-+= ..+..-.+.| |++-+++.+++.+.+ +|.| +|. ...+.+.+.+.|++
T Consensus 17 M~~~aIIlA~G~stRlp~K~L~~i~GkP---mi~~~l~~l~~~~i~--------~IvV-~t~----~~~i~~~~~~~g~~ 80 (264)
T 3k8d_A 17 MSFVVIIPARYASTRLPGKPLVDINGKP---MIVHVLERARESGAE--------RIIV-ATD----HEDVARAVEAAGGE 80 (264)
T ss_dssp -CCEEEEECCSCCSSSTTGGGCEETTEE---HHHHHHHHHHHTTCS--------EEEE-EES----CHHHHHHHHHTTCE
T ss_pred CceEEEEEcCCCCCCCCCcceeeECCeE---HHHHHHHHHHhCCCC--------EEEE-ECC----HHHHHHHHHHcCCE
Confidence 34555555554443331 2222222444 566777777776654 6744 553 24466777788999
Q ss_pred EEecCccchh--hchHHHHHHHh----------cCChHH-HHHHHHHHHHHHHhCCCCEEEECC
Q 020005 243 VVLPDKATME--HTLIPALDALN----------RKDVEG-ARNLLRIALQVLLVRAVNTVILAS 293 (332)
Q Consensus 243 vv~P~~~~q~--~~l~~~i~~ik----------~g~~~~-a~~~l~~~~~~L~~~gad~VILGC 293 (332)
++...++.+. ..+..++..++ .|+.+- ..+.+..+++.+.+.++++.++++
T Consensus 81 v~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~ 144 (264)
T 3k8d_A 81 VCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAV 144 (264)
T ss_dssp EEECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 8763222221 11333444442 122211 245677777777777888887775
No 397
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.94 E-value=2.8e+02 Score=24.81 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 18 ~iD~~~l----~~lv~~li~~Gv~gl~~~GttGE~ 48 (291)
T 3tak_A 18 GVDWKSL----EKLVEWHIEQGTNSIVAVGTTGEA 48 (291)
T ss_dssp CBCHHHH----HHHHHHHHHHTCCEEEESSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHCCCCEEEECcccccc
Confidence 4566655 445568889999999999888654
No 398
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=22.91 E-value=90 Score=26.88 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=45.2
Q ss_pred CcEEEE-eCCCchhhHHHHh------hhCCCCeeechHHHHHHHHHhcCCCCcCC----------------CCceEEEEe
Q 020005 166 ARCIVM-PCHLSHIWHDEVC------KGCSVPFLHVSECVAKELKEANMKPLEAG----------------SPLRIGVLA 222 (332)
Q Consensus 166 ad~IvI-~CNTaH~~~d~l~------~~~~iPii~Ive~t~~~l~~~g~k~~~~~----------------~~~rVGlLa 222 (332)
.|.+++ .-|....|++.++ ...++|+.-+.+.|++++++.|.++...+ .++||.++.
T Consensus 38 ~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~r 117 (229)
T 3p9z_A 38 FNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLR 117 (229)
T ss_dssp CSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEE
T ss_pred CCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEEC
Confidence 454443 3344444454443 23468899999999999999887643222 123554443
Q ss_pred chhhhchhhHHHHHHhcCCeEE
Q 020005 223 KNAILTAGFYQEKLQHEGFEVV 244 (332)
Q Consensus 223 T~~T~~s~lY~~~l~~~Gi~vv 244 (332)
+........+.|++.|+++.
T Consensus 118 --g~~~~~~L~~~L~~~G~~v~ 137 (229)
T 3p9z_A 118 --AKEIVSSLDTILLEHGIDFK 137 (229)
T ss_dssp --ESSCSSCHHHHHHHTTCEEE
T ss_pred --CccchHHHHHHHHHCCCeEE
Confidence 33344566777888887653
No 399
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=22.82 E-value=2.6e+02 Score=25.30 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 24 ~iD~~~l----~~lv~~li~~Gv~gl~v~GttGE~ 54 (301)
T 3m5v_A 24 KVDEQSY----ARLIKRQIENGIDAVVPVGTTGES 54 (301)
T ss_dssp EECHHHH----HHHHHHHHHTTCCEEECSSTTTTG
T ss_pred CCCHHHH----HHHHHHHHHcCCCEEEECccccCh
Confidence 3466554 445578889999999999988654
No 400
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.74 E-value=79 Score=23.08 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh---HHHHhhhCCCCeeech
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSVPFLHVS 195 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~---~d~l~~~~~iPii~Iv 195 (332)
+..+.+++..+.+++|+.|....+ +..+.+..++|++.+-
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 445667788899999999997655 4555566799999875
No 401
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=22.68 E-value=4.7e+02 Score=24.74 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHc-CC
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKA-GA 166 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~-Ga 166 (332)
-+-|.+|+.|=+.|-..--. -.+.+..--..+.-||....+.++..+...... |
T Consensus 58 aiDWdaTLafR~~Lws~GLG------------------------VAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~pg- 112 (396)
T 4dnh_A 58 AIDWERTLAFRHRLWDLGLG------------------------VAESMDTAQRGMGLGWPEARELIRRSLAEARGRPD- 112 (396)
T ss_dssp CBCHHHHHHHHHHHHHTTCE------------------------EEETCGGGTBTTTBCHHHHHHHHHHHHHHHHTSSS-
T ss_pred cCChHHHHHHHHHHHHcccc------------------------HHHHHHHhhccCCCCcHHHHHHHHHHHHHHhcCCC-
Confidence 57899999998888644321 001110000135679998888888766666554 5
Q ss_pred cEEEEeCCCchhh------HHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc--------hhhH
Q 020005 167 RCIVMPCHLSHIW------HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT--------AGFY 232 (332)
Q Consensus 167 d~IvI~CNTaH~~------~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~--------s~lY 232 (332)
..|+.-|.|-|.- ++++... -++-++.+.+.|. ++-|+|++.--. ..+|
T Consensus 113 ~~ia~G~GTDqL~~~~~~~l~~V~~A--------Y~EQ~~~Ve~~G~---------~~ILMASRaLA~~A~~pdDY~~VY 175 (396)
T 4dnh_A 113 ALIACGAGTDHLAPGPDVSIDDILAA--------YESQIEAIEAEGG---------RIILMASRALAAAAKGPEDYIRVY 175 (396)
T ss_dssp CCEEEEECCTTSCCCTTCCHHHHHHH--------HHHHHHHHHHTTC---------CEEECCCHHHHHHCCSHHHHHHHH
T ss_pred CeeeeccCcCCCCCCCCCCHHHHHHH--------HHHHHHHHHHcCC---------eEEEehhHHHHHHhCCHHHHHHHH
Confidence 4588899998832 2332221 2334444555543 799999876432 4679
Q ss_pred HHHHHhcCCeEEe
Q 020005 233 QEKLQHEGFEVVL 245 (332)
Q Consensus 233 ~~~l~~~Gi~vv~ 245 (332)
.+.|.+..-.||+
T Consensus 176 ~~vL~q~~~PVIL 188 (396)
T 4dnh_A 176 DRVLSQVKEPVII 188 (396)
T ss_dssp HHHHHHCSSCEEE
T ss_pred HHHHHhcCCCEEE
Confidence 9999887666665
No 402
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=22.64 E-value=4.7e+02 Score=24.36 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCch--------hhccccCCCCCCCHHHH
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSF--------SSLNCKGGGVQLDDSLI 150 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~--------~~~~~~~~~~~~d~~~i 150 (332)
.+|+|+|+| +...+..+.+.+.+.- +-.+++++++.-...-.......+ .+..
T Consensus 1 m~k~ilI~g--~g~~~~~~~~a~~~~G----~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d------------- 61 (451)
T 1ulz_A 1 MVNKVLVAN--RGEIAVRIIRACKELG----IPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLN------------- 61 (451)
T ss_dssp CCSSEEECC--CHHHHHHHHHHHHHHT----CCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHC-------------
T ss_pred CCceEEEEC--CcHHHHHHHHHHHHcC----CeEEEEechhhcccchhhhCcEEEEcCCCcccccCC-------------
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCc--hhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCceEEEEechhhhc
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLS--HIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTa--H~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~rVGlLaT~~T~~ 228 (332)
.....+..++.++|+|+..+-.. +..+.++.+..++|+++--..+++....+
T Consensus 62 ---~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK----------------------- 115 (451)
T 1ulz_A 62 ---KQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDK----------------------- 115 (451)
T ss_dssp ---HHHHHHHHHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSH-----------------------
T ss_pred ---HHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCH-----------------------
Q ss_pred hhhHHHHHHhcCCeE
Q 020005 229 AGFYQEKLQHEGFEV 243 (332)
Q Consensus 229 s~lY~~~l~~~Gi~v 243 (332)
...++.++++|+.+
T Consensus 116 -~~~k~~l~~~gip~ 129 (451)
T 1ulz_A 116 -ARSKEVMKKAGVPV 129 (451)
T ss_dssp -HHHHHHHHHTTCCB
T ss_pred -HHHHHHHHHcCCCC
No 403
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=22.54 E-value=2.6e+02 Score=25.16 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~~ 179 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.+
T Consensus 19 ~iD~~~l----~~lv~~li~~Gv~gl~v~GttGE~~ 50 (292)
T 3daq_A 19 KVNLEAL----KAHVNFLLENNAQAIIVNGTTAESP 50 (292)
T ss_dssp EECHHHH----HHHHHHHHHTTCCEEEESSGGGTGG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECccccccc
Confidence 3455554 4456788899999999999886543
No 404
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=22.54 E-value=1.1e+02 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=19.3
Q ss_pred ceEEEEechhhhc--------hhhHHHHHHhcCCeEE
Q 020005 216 LRIGVLAKNAILT--------AGFYQEKLQHEGFEVV 244 (332)
Q Consensus 216 ~rVGlLaT~~T~~--------s~lY~~~l~~~Gi~vv 244 (332)
.||+||.|-..+. +.+....|++.|++++
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~ 44 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSA 44 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEEC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEE
Confidence 3899999965442 2344566777788763
No 405
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=22.49 E-value=3.7e+02 Score=23.88 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=19.4
Q ss_pred ccCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEec
Q 020005 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCS 117 (332)
Q Consensus 79 ~~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s 117 (332)
.|++|||| |.|...+.- -+.+.+. . .++++++
T Consensus 20 ~m~~I~iI-G~G~mG~~~-A~~l~~~----G-~~V~~~d 51 (310)
T 3doj_A 20 HMMEVGFL-GLGIMGKAM-SMNLLKN----G-FKVTVWN 51 (310)
T ss_dssp CSCEEEEE-CCSHHHHHH-HHHHHHT----T-CEEEEEC
T ss_pred cCCEEEEE-CccHHHHHH-HHHHHHC----C-CeEEEEe
Confidence 47799999 688877652 2333321 2 3566666
No 406
>2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B), SUA5 domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.30 E-value=1.4e+02 Score=22.94 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh----hHHHHhhhCC
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI----WHDEVCKGCS 188 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~----~~d~l~~~~~ 188 (332)
.|..++...|-...+.|.+.|+|.|++...-.+- ..++|++...
T Consensus 52 ~~~~~~A~~Lf~~LR~~D~~~~~~I~~e~~p~~g~g~Ai~nRL~kAA~ 99 (105)
T 2yv4_A 52 SSVEEVAKNLFKALRYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASG 99 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCSEEEEEEESGGGHHHHHHHHC---CC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCcChHHHHHHHHHHhcC
Confidence 4667777778888889999999999987664442 2455555543
No 407
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.28 E-value=1e+02 Score=27.92 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh---------hHHHHhhhC---CCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI---------WHDEVCKGC---SVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~---------~~d~l~~~~---~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+ ++||+
T Consensus 84 t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPii 137 (294)
T 3b4u_A 84 IEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDIL 137 (294)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEE
No 408
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.27 E-value=81 Score=28.58 Aligned_cols=42 Identities=5% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhhhCCCCee
Q 020005 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (332)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI~CNTaH~--------~~d~l~~~~~iPii 192 (332)
.....+.++..++.|||++++..-.... +|.+|.+.+++||+
T Consensus 82 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 131 (292)
T 2ojp_A 82 TAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQI 131 (292)
T ss_dssp HHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
No 409
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=22.24 E-value=1.6e+02 Score=22.23 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHH---hhhCCCCeeech
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEV---CKGCSVPFLHVS 195 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l---~~~~~iPii~Iv 195 (332)
+..+.+++..+.+++++.+........+ .+..++|++...
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeec
Confidence 3446678888999999999987664444 556789998873
No 410
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=22.22 E-value=4.3e+02 Score=23.73 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee----------echHHHHHHHHHhcCCCCcCCCCc
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL----------HVSECVAKELKEANMKPLEAGSPL 216 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii----------~Ive~t~~~l~~~g~k~~~~~~~~ 216 (332)
.+.++..++.|||++++..-... .+|.+|.+.+++||+ ++-.+++..+.+... +
T Consensus 93 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~p--------n 164 (301)
T 3m5v_A 93 VGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE--------N 164 (301)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCT--------T
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCC--------C
Confidence 34556788999999877653211 147888888899986 455566666665311 1
Q ss_pred eEEEEechhhhchhhHHHHHHh-cCCeEEecCccch-------------------hhchHHHHHHHhcCChHHHHHHHHH
Q 020005 217 RIGVLAKNAILTAGFYQEKLQH-EGFEVVLPDKATM-------------------EHTLIPALDALNRKDVEGARNLLRI 276 (332)
Q Consensus 217 rVGlLaT~~T~~s~lY~~~l~~-~Gi~vv~P~~~~q-------------------~~~l~~~i~~ik~g~~~~a~~~l~~ 276 (332)
-||+==|.+.+ ..+.+.++. .++.++..+++.- .+.+..++++.++|+.+++++...+
T Consensus 165 ivgiKdssgd~--~~~~~~~~~~~~f~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~ 242 (301)
T 3m5v_A 165 IYGVKEASGNI--DKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMISALTHFALDENYKEAKKINDE 242 (301)
T ss_dssp EEEEEECSSCH--HHHHHHHHHCTTSEEEECCGGGHHHHHHTTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEEeCCCCH--HHHHHHHHhCCCeEEEEccHHHHHHHHHcCCCEEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46665554433 223343333 3566655443211 0112233566778888777655444
No 411
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=22.15 E-value=1.1e+02 Score=26.44 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=11.8
Q ss_pred HHHHHcCCcEEEEeCCCc
Q 020005 159 VFLEKAGARCIVMPCHLS 176 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTa 176 (332)
+.|++.|+++.-++|...
T Consensus 150 ~~L~~~G~~v~~~~vY~~ 167 (254)
T 4es6_A 150 ERLRGQGVQVDYLPLYRR 167 (254)
T ss_dssp HHHHHTTCEEEEEECEEE
T ss_pred HHHHHCCCEEEEEeEEEe
Confidence 456677777777766543
No 412
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.13 E-value=1.8e+02 Score=21.71 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH---HHHhhhCCCCeeec
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWH---DEVCKGCSVPFLHV 194 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~---d~l~~~~~iPii~I 194 (332)
+..+.+++..+.+++++.+..--.. ..+.+..++|++..
T Consensus 22 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 22 ETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4456788888999999999765554 44445668887654
No 413
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=21.99 E-value=2.4e+02 Score=23.97 Aligned_cols=36 Identities=17% Similarity=-0.014 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeee
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~ 193 (332)
.+.++.++++|++.+-+- + -.+++.+++.+++||+.
T Consensus 39 ~~~a~~~~~~G~~~i~~~--~-~~~i~~i~~~~~~p~i~ 74 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRAN--S-VRDIKEIQAITDLPIIG 74 (234)
T ss_dssp HHHHHHHHHHTCSEEEEE--S-HHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHCCCcEeecC--C-HHHHHHHHHhCCCCEEe
Confidence 345667889999998763 3 34578999999999974
No 414
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=21.95 E-value=1.5e+02 Score=26.36 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=10.6
Q ss_pred hhccCeEEEEeCCChHHHH
Q 020005 77 LNQANTVGIVGGASVDSTL 95 (332)
Q Consensus 77 ~~~~k~IGIiGGmGp~AT~ 95 (332)
|+.+++|||| |.|...+.
T Consensus 12 M~~~~~I~vI-G~G~mG~~ 29 (296)
T 3qha_A 12 TTEQLKLGYI-GLGNMGAP 29 (296)
T ss_dssp ---CCCEEEE-CCSTTHHH
T ss_pred ccCCCeEEEE-CcCHHHHH
Confidence 4445689999 56766643
No 415
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=21.93 E-value=2.7e+02 Score=23.28 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=23.3
Q ss_pred ccCeEEEEe-CCChHHHHHHHHHHHHHhccC-CCCCEEEec-CCc
Q 020005 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE-NDFPFLLCS-DPL 120 (332)
Q Consensus 79 ~~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d-~~~~~vi~s-~p~ 120 (332)
+.++|=++| |-+-..+.+|..++....... -.+|.+..+ ++.
T Consensus 45 ~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~ 89 (201)
T 3trj_A 45 NGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVA 89 (201)
T ss_dssp TTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHH
T ss_pred CCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChH
Confidence 458999997 555556667777776433222 345555554 443
No 416
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.88 E-value=3.7e+02 Score=22.81 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=33.2
Q ss_pred CCceEEEEechhhhchhhH-------HHHHHhcCCe-EEecCccchhhchHHHHHHHhcCChHHHHHHHHHHHHHHHhCC
Q 020005 214 SPLRIGVLAKNAILTAGFY-------QEKLQHEGFE-VVLPDKATMEHTLIPALDALNRKDVEGARNLLRIALQVLLVRA 285 (332)
Q Consensus 214 ~~~rVGlLaT~~T~~s~lY-------~~~l~~~Gi~-vv~P~~~~q~~~l~~~i~~ik~g~~~~a~~~l~~~~~~L~~~g 285 (332)
++++||++-... ...+| ++.++++|++ +++-.... +. +...+.++.+..++
T Consensus 9 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~----~~~~~~~~~l~~~~ 67 (277)
T 3hs3_A 9 KSKMIGIIIPDL--NNRFYAQIIDGIQEVIQKEGYTALISFSTNS---------------DV----KKYQNAIINFENNN 67 (277)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECSSC---------------CH----HHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCC--CChhHHHHHHHHHHHHHHCCCCEEEEEeCCC---------------Ch----HHHHHHHHHHHhCC
Confidence 345899987542 23333 3446667888 65422110 00 01123345577789
Q ss_pred CCEEEECC
Q 020005 286 VNTVILAS 293 (332)
Q Consensus 286 ad~VILGC 293 (332)
+|+||+..
T Consensus 68 vdgiIi~~ 75 (277)
T 3hs3_A 68 VDGIITSA 75 (277)
T ss_dssp CSEEEEEC
T ss_pred CCEEEEcc
Confidence 99999876
No 417
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=21.82 E-value=2.5e+02 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|+|.|++.+.|--.
T Consensus 41 ~iD~~~l----~~lv~~li~~Gv~Gi~v~GtTGE~ 71 (315)
T 3na8_A 41 GLDLPAL----GRSIERLIDGGVHAIAPLGSTGEG 71 (315)
T ss_dssp SBCHHHH----HHHHHHHHHTTCSEEECSSGGGTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECccccCh
Confidence 4566665 445568889999999999988554
No 418
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=21.70 E-value=1.2e+02 Score=28.40 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCch---------hhHHHHhh-hCCCCee---------echHHHHHHH
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH---------IWHDEVCK-GCSVPFL---------HVSECVAKEL 202 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH---------~~~d~l~~-~~~iPii---------~Ive~t~~~l 202 (332)
+.++..++.|||++++..-... .+|.+|.+ .+++||+ +|-..++..+
T Consensus 109 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L 174 (344)
T 2hmc_A 109 AHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFAL 174 (344)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHH
Confidence 4456678899998877443221 14788888 7888864 3445566666
No 419
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.65 E-value=3e+02 Score=24.60 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 19 iD~~~l----~~lv~~li~~Gv~gl~~~GttGE~ 48 (291)
T 3a5f_A 19 VDFDKL----SELIEWHIKSKTDAIIVCGTTGEA 48 (291)
T ss_dssp BCHHHH----HHHHHHHHHTTCCEEEESSGGGTG
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECccccCh
Confidence 466654 445578889999999998887544
No 420
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=21.55 E-value=2e+02 Score=24.67 Aligned_cols=103 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCCcch--hhhhhcCCCchhhccccCCCCCCCHHHHHHHH
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLN--KELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d---~~~~~vi~s~p~ip--~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (332)
|++|+|+ .+|.-+ +.+.+.+..... ..+..|+.+.|+-+ .+-..++-..+.. .+.+...-.++=
T Consensus 3 m~ki~vl-~sG~g~---~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~-------~~~~~~~~~~~~ 71 (212)
T 3av3_A 3 MKRLAVF-ASGSGT---NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVF-------SPKDYPSKAAFE 71 (212)
T ss_dssp CEEEEEE-CCSSCH---HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEEC-------CGGGSSSHHHHH
T ss_pred CcEEEEE-EECCcH---HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEe-------CcccccchhhhH
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~I 194 (332)
.+..+.|++.++|+|+++... +..=+++-+.....+||+
T Consensus 72 ~~~~~~l~~~~~Dliv~a~y~-~il~~~~l~~~~~~~iNi 110 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAGYM-RLIGPTLLSAYEGKIVNI 110 (212)
T ss_dssp HHHHHHHHHTTCCEEEESSCC-SCCCHHHHHHTTTCEEEE
T ss_pred HHHHHHHHhcCCCEEEEchhh-hhCCHHHHhhhcCCEEEE
No 421
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=21.55 E-value=2.8e+02 Score=25.11 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=23.3
Q ss_pred cCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEec
Q 020005 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCS 117 (332)
Q Consensus 80 ~k~IGIiGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s 117 (332)
+-+|||+ =+|-.+|..+...+.+.-..++.+.+-+++
T Consensus 3 vvKiGii-KlGNigts~~idl~LDErAdRedI~vrv~g 39 (283)
T 1qv9_A 3 VAKAIFI-KCGNLGTSMMMDMLLDERADREDVEFRVVG 39 (283)
T ss_dssp CEEEEEE-ECSCCHHHHHTTGGGSTTSCCSSEEEEEEE
T ss_pred eEEEEEE-EecccchHHHHHHHHHhhhccCCceEEEec
Confidence 4589999 688888877666665444333555554433
No 422
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.53 E-value=2.9e+02 Score=25.19 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|+|.|++.+.|--.
T Consensus 40 ~iD~~~l----~~lv~~li~~Gv~Gl~v~GtTGE~ 70 (314)
T 3qze_A 40 RLDWDSL----AKLVDFHLQEGTNAIVAVGTTGES 70 (314)
T ss_dssp CBCHHHH----HHHHHHHHHHTCCEEEESSGGGTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECccccCh
Confidence 4566665 445568889999999998888554
No 423
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=21.51 E-value=2.1e+02 Score=26.31 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=44.3
Q ss_pred hhhhc--cCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhh--hhcCCCchhhccccCCCCCCCHHH
Q 020005 75 ALLNQ--ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKEL--LSHDRSSFSSLNCKGGGVQLDDSL 149 (332)
Q Consensus 75 ~~~~~--~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~l--l~~~~~~~~~~~~~~~~~~~d~~~ 149 (332)
..+.. .+.|-|+| |.+..++.++..++.+.. .+++....+.+..... .....|.+-.. ...+.-.+
T Consensus 47 ~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~----g~~~~~~~~~e~~~~~~~~l~~~dlvI~i-----S~SG~t~e 117 (355)
T 2a3n_A 47 DEIYQAGFSSLFFASVGGSLAPMMAINEFAKELT----TLPVYVEQAAELIHKGNKRLNKDSVVITL-----SKSGDTKE 117 (355)
T ss_dssp HHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHC----CSCEEEEEHHHHHHHCCTTCCTTCEEEEE-----CSSSCCHH
T ss_pred HHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhc----CCeEEEcCcHHHHhhchhcCCCCCEEEEE-----eCCCCCHH
Confidence 34444 67899998 766666666555555433 3344433322221000 00011111111 01112222
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCc
Q 020005 150 IVENLRRKRVFLEKAGARCIVMPCHLS 176 (332)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvI~CNTa 176 (332)
+ .+.++..++.|+..|+|.|+.-
T Consensus 118 ~----~~a~~~ak~~Ga~vi~IT~~~~ 140 (355)
T 2a3n_A 118 S----VAIAEWCKAQGIRVVAITKNAD 140 (355)
T ss_dssp H----HHHHHHHHHTTCEEEEEESCTT
T ss_pred H----HHHHHHHHHCCCeEEEEECCCC
Confidence 2 3455677889999999999853
No 424
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.45 E-value=1.1e+02 Score=27.91 Aligned_cols=37 Identities=5% Similarity=0.062 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCC-CCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCS-VPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~-iPii 192 (332)
+.++..++.|||++++..-... .+|.+|.+.++ +||+
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPii 142 (303)
T 2wkj_A 97 QLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMV 142 (303)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4456778899998877543221 14688888888 8864
No 425
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=21.24 E-value=1.6e+02 Score=29.09 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeCCCchhhHHHHhhhCCCCeeechHHHHHHHHHhcCCCCcCCCCce-EEEEechhhhch
Q 020005 152 ENLRRKRVFLEKAGARCIV-MPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLR-IGVLAKNAILTA 229 (332)
Q Consensus 152 ~~l~~~~~~Le~~Gad~Iv-I~CNTaH~~~d~l~~~~~iPii~Ive~t~~~l~~~g~k~~~~~~~~r-VGlLaT~~T~~s 229 (332)
......++.|++.|++.|. +|-...-++++.+.+.-++.++....+-...-...|+- .-++| ..+++|.|+=..
T Consensus 12 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyA----r~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 12 DYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLA----KASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHH----HHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHH----HhhCCCEEEEECCchhhh
Confidence 3344456889999998655 56665567789998766788777765544332222210 00124 446777776444
Q ss_pred hhHHHHHHhc--CCeEE
Q 020005 230 GFYQEKLQHE--GFEVV 244 (332)
Q Consensus 230 ~lY~~~l~~~--Gi~vv 244 (332)
.++....+++ ++.++
T Consensus 88 N~~~gia~A~~d~vPll 104 (578)
T 3lq1_A 88 NYFPAVAEANLSQIPLI 104 (578)
T ss_dssp TTHHHHHHHHHTTCCEE
T ss_pred hhhHHHHHHHhcCCCeE
Confidence 4444433333 45544
No 426
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=21.16 E-value=2e+02 Score=26.90 Aligned_cols=24 Identities=8% Similarity=-0.141 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.+.++..++.|+..|+|.||.-.+
T Consensus 114 l~a~~~ak~~Ga~~IaIT~~~~S~ 137 (366)
T 3knz_A 114 LAAMERARNVGHITASMAGVAPAT 137 (366)
T ss_dssp HHHHHHHHHTTCEEEEEESSSSCG
T ss_pred HHHHHHHHHcCCCEEEEECCCCCh
Confidence 345667888999999999986444
No 427
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.07 E-value=3.1e+02 Score=25.23 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 51 ~iD~~~l----~~lv~~li~~Gv~Gl~v~GtTGE~ 81 (332)
T 2r8w_A 51 RVDIEAF----SALIARLDAAEVDSVGILGSTGIY 81 (332)
T ss_dssp CBCHHHH----HHHHHHHHHHTCSEEEESSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECccccCh
Confidence 4466654 445578889999999999888544
No 428
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=21.04 E-value=1.2e+02 Score=25.95 Aligned_cols=91 Identities=10% Similarity=0.135 Sum_probs=49.8
Q ss_pred chhhhc-----cCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchh---hhhhcCCCchhhccccCCCCC
Q 020005 74 DALLNQ-----ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNK---ELLSHDRSSFSSLNCKGGGVQ 144 (332)
Q Consensus 74 ~~~~~~-----~k~IGIiG-GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~---~ll~~~~~~~~~~~~~~~~~~ 144 (332)
...|.. .+.|-++| |.+..++.++..++.+.. .+....++.+... ..+ ...|.+-... ..
T Consensus 48 ~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg-----~~~~~~~~~~~~~~~~~~~-~~~DlvI~iS-----~S 116 (220)
T 3etn_A 48 VELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTG-----IPSVFLHPSEAQHGDLGIL-QENDLLLLIS-----NS 116 (220)
T ss_dssp HHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTT-----CCEEECCTTGGGBTGGGGC-CTTCEEEEEC-----SS
T ss_pred HHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcC-----CcEEEeCCHHHHHhhhccC-CCCCEEEEEc-----CC
Confidence 345555 78999998 666667777777777532 2333333333211 011 1122221110 11
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCcEEEEeCCCchhh
Q 020005 145 LDDSLIVENLRRKRVFLEK--AGARCIVMPCHLSHIW 179 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~--~Gad~IvI~CNTaH~~ 179 (332)
+.-.+ +.+.++.+++ .|+..|+|.++...+.
T Consensus 117 G~t~~----~i~~~~~ak~~~~Ga~vI~IT~~~~s~L 149 (220)
T 3etn_A 117 GKTRE----IVELTQLAHNLNPGLKFIVITGNPDSPL 149 (220)
T ss_dssp SCCHH----HHHHHHHHHHHCTTCEEEEEESCTTSHH
T ss_pred CCCHH----HHHHHHHHHhcCCCCeEEEEECCCCChh
Confidence 12223 3455667888 9999999999875544
No 429
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.01 E-value=3.1e+02 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 28 ~iD~~~l----~~lv~~li~~Gv~Gl~v~GtTGE~ 58 (303)
T 2wkj_A 28 ALDKASL----RRLVQFNIQQGIDGLYVGGSTGEA 58 (303)
T ss_dssp SBCHHHH----HHHHHHHHHTTCSEEEESSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECeeccCh
Confidence 4566665 445568889999999999887544
No 430
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=20.96 E-value=2e+02 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeC
Q 020005 149 LIVENLRRKRVFLEKAGARCIVMPC 173 (332)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvI~C 173 (332)
...+.+.+.++.+.+.|+..|++..
T Consensus 109 ~~~~~l~~~i~~~~~~g~~vil~tp 133 (233)
T 1k7c_A 109 TFPAYLENAAKLFTAKGAKVILSSQ 133 (233)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4666777788888889998888754
No 431
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=20.95 E-value=1.3e+02 Score=22.87 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhh---hCCCCeee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCK---GCSVPFLH 193 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~---~~~iPii~ 193 (332)
+..+.+++..+.+++++.|........+.. ..++|+++
T Consensus 29 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~ 69 (104)
T 4a18_G 29 STIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHH 69 (104)
T ss_dssp HHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 455678888899999999998766555543 44899886
No 432
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.94 E-value=3.1e+02 Score=23.22 Aligned_cols=32 Identities=13% Similarity=0.396 Sum_probs=19.0
Q ss_pred CCceEEEEechhh---hchhhHH-------HHHHhcCCeEEe
Q 020005 214 SPLRIGVLAKNAI---LTAGFYQ-------EKLQHEGFEVVL 245 (332)
Q Consensus 214 ~~~rVGlLaT~~T---~~s~lY~-------~~l~~~Gi~vv~ 245 (332)
++++||++-.... +...+|. +.++++|+++++
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 48 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM 48 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3458999876511 3333443 445666888766
No 433
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=20.66 E-value=4.3e+02 Score=23.46 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeech
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Iv 195 (332)
....+.+++.+.|+|+.-+ +...+...+.+..++|+++..
T Consensus 92 ~~l~~~l~~~~pD~Vi~d~-~~~~~~~~aA~~~giP~v~~~ 131 (402)
T 3ia7_A 92 RAAEEALGDNPPDLVVYDV-FPFIAGRLLAARWDRPAVRLT 131 (402)
T ss_dssp HHHHHHHTTCCCSEEEEES-TTHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhccCCCEEEECc-hHHHHHHHHHHhhCCCEEEEe
Confidence 3445666778999888633 334445556677899999864
No 434
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=20.52 E-value=89 Score=27.73 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHcCCcEEEEe-CCCchh--h---HHHHhhhCCCCeeec
Q 020005 158 RVFLEKAGARCIVMP-CHLSHI--W---HDEVCKGCSVPFLHV 194 (332)
Q Consensus 158 ~~~Le~~Gad~IvI~-CNTaH~--~---~d~l~~~~~iPii~I 194 (332)
++.|.++|+|+|.+- .+-... . ..++++ .++|++=|
T Consensus 26 ~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~ 67 (234)
T 2f6u_A 26 IKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVE 67 (234)
T ss_dssp HHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEEC
T ss_pred HHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEe
Confidence 467889999999987 222111 2 466666 68887644
No 435
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.48 E-value=3.2e+02 Score=24.95 Aligned_cols=31 Identities=6% Similarity=-0.025 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|+|.|++.+.|--.
T Consensus 39 ~iD~~~l----~~li~~li~~Gv~Gl~v~GtTGE~ 69 (315)
T 3si9_A 39 AIDEKAF----CNFVEWQITQGINGVSPVGTTGES 69 (315)
T ss_dssp CBCHHHH----HHHHHHHHHTTCSEEECSSTTTTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEeCccccCc
Confidence 4566665 445578889999999998888554
No 436
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=20.45 E-value=1.3e+02 Score=27.27 Aligned_cols=68 Identities=13% Similarity=0.002 Sum_probs=44.4
Q ss_pred EeCCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 020005 86 VGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAG 165 (332)
Q Consensus 86 iGGmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~G 165 (332)
.||+-|-... ++.+.+.+ ++|+.+.=.|.-- ||. | +.++ ++.+.+.++.+.+.|
T Consensus 33 ~GGlTPS~g~--i~~~~~~~----~ipv~vMIRPR~G--------dF~-Y----------s~~E-~~~M~~Di~~~~~~G 86 (256)
T 1twd_A 33 EGGLTPSLGV--LKSVRQRV----TIPVHPIIRPRGG--------DFC-Y----------SDGE-FAAILEDVRTVRELG 86 (256)
T ss_dssp GTCBCCCHHH--HHHHHHHC----CSCEEEBCCSSSS--------CSC-C----------CHHH-HHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHH--HHHHHHHc----CCceEEEECCCCC--------CCc-C----------CHHH-HHHHHHHHHHHHHcC
Confidence 5788886544 45555444 5777665545421 221 1 2222 345777888999999
Q ss_pred CcEEEEeCCCchhh
Q 020005 166 ARCIVMPCHLSHIW 179 (332)
Q Consensus 166 ad~IvI~CNTaH~~ 179 (332)
+|-+|+-|-|..-.
T Consensus 87 adGvV~G~Lt~dg~ 100 (256)
T 1twd_A 87 FPGLVTGVLDVDGN 100 (256)
T ss_dssp CSEEEECCBCTTSS
T ss_pred CCEEEEeeECCCCC
Confidence 99999999998764
No 437
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=20.42 E-value=2.6e+02 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|+|.|++.+.|--.
T Consensus 28 ~iD~~~l----~~lv~~li~~Gv~gl~v~GtTGE~ 58 (318)
T 3qfe_A 28 TLDLASQ----ERYYAYLARSGLTGLVILGTNAEA 58 (318)
T ss_dssp EECHHHH----HHHHHHHHTTTCSEEEESSGGGTG
T ss_pred CCCHHHH----HHHHHHHHHcCCCEEEeCccccCh
Confidence 3466554 445678999999999999988654
No 438
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=20.34 E-value=82 Score=29.55 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhhhCCCCeeechH-------HHHHH--HHHh--cCCCCcCCCCceEEEEe
Q 020005 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-------CVAKE--LKEA--NMKPLEAGSPLRIGVLA 222 (332)
Q Consensus 154 l~~~~~~Le~~Gad~IvI~CNTaH~~~d~l~~~~~iPii~Ive-------~t~~~--l~~~--g~k~~~~~~~~rVGlLa 222 (332)
+.+.++-|.+. +|+|++=.. .|..++++.+.+++||||... +.++. +++. |. ++ .+.+|+++|
T Consensus 89 l~DTarvLs~~-~D~IviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQ~LaDl~Ti~e~~~g~-~l---~gl~ia~vG 162 (333)
T 1duv_G 89 IKDTARVLGRM-YDGIQYRGY-GQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGK-AF---NEMTLVYAG 162 (333)
T ss_dssp HHHHHHHHTTT-CSEEEEECS-CHHHHHHHHHHHSSCEEESCCSSCCHHHHHHHHHHHHHHSTTC-CG---GGCEEEEES
T ss_pred HHHHHHHHHHh-CCEEEEEcC-CchHHHHHHHhCCCCeEcCCCCCCCchHHHHHHHHHHHHhcCC-CC---CCcEEEEEC
Confidence 45566778877 799999987 488889999999999999743 22221 3332 20 01 235899999
Q ss_pred ch--hhhchhhHHHHHHhcCCeEEec
Q 020005 223 KN--AILTAGFYQEKLQHEGFEVVLP 246 (332)
Q Consensus 223 T~--~T~~s~lY~~~l~~~Gi~vv~P 246 (332)
-- .+..|- -..+...|+++.+-
T Consensus 163 D~~~~va~Sl--~~~~~~~G~~v~~~ 186 (333)
T 1duv_G 163 DARNNMGNSM--LEAAALTGLDLRLV 186 (333)
T ss_dssp CTTSHHHHHH--HHHHHHHCCEEEEE
T ss_pred CCccchHHHH--HHHHHHcCCEEEEE
Confidence 73 333333 34466679888653
No 439
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.33 E-value=76 Score=28.75 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhhhCCCCee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL 192 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH--------~~~d~l~~~~~iPii 192 (332)
+.++..++.|||++++..-... .+|.+|.+.+++||+
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 131 (291)
T 3a5f_A 87 AMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPII 131 (291)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4456788999999877654321 134667777788864
No 440
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.32 E-value=2.8e+02 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|+|.|++.+.|--.
T Consensus 25 ~iD~~~l----~~lv~~li~~Gv~Gl~v~GtTGE~ 55 (313)
T 3dz1_A 25 KIDDVSI----DRLTDFYAEVGCEGVTVLGILGEA 55 (313)
T ss_dssp CBCHHHH----HHHHHHHHHTTCSEEEESTGGGTG
T ss_pred CcCHHHH----HHHHHHHHHCCCCEEEeCccCcCh
Confidence 4566654 445578999999999999888554
No 441
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.30 E-value=1.1e+02 Score=28.04 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc-----h---hhHHHHhhhCCCCee--e----chHHHHHHHHHhcCCCCcCCCCceEEE
Q 020005 155 RRKRVFLEKAGARCIVMPCHLS-----H---IWHDEVCKGCSVPFL--H----VSECVAKELKEANMKPLEAGSPLRIGV 220 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTa-----H---~~~d~l~~~~~iPii--~----Ive~t~~~l~~~g~k~~~~~~~~rVGl 220 (332)
.+.++..++.|||++++.+--. - .+|.+|.+.+++||+ | +-.+++..+.+ ++ +-||+
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~--~p-------nIvgi 166 (316)
T 3e96_A 96 IELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAP--LQ-------NLVGV 166 (316)
T ss_dssp HHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTT--CT-------TEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHc--CC-------CEEEE
Confidence 3445678889999988743211 1 147888888889975 3 44455555542 11 14566
Q ss_pred EechhhhchhhHHHHHHhc---CCe-EEecCccchh--------------------hchHHHHHHHhcCChHHHHHHHHH
Q 020005 221 LAKNAILTAGFYQEKLQHE---GFE-VVLPDKATME--------------------HTLIPALDALNRKDVEGARNLLRI 276 (332)
Q Consensus 221 LaT~~T~~s~lY~~~l~~~---Gi~-vv~P~~~~q~--------------------~~l~~~i~~ik~g~~~~a~~~l~~ 276 (332)
==|.+.+ ..+.+.++.. ++. ++..+++..- ..+..++++.++|+.+++++...+
T Consensus 167 Kdssgd~--~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~ 244 (316)
T 3e96_A 167 KYAINDL--PRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKGFTSGLVNLLPQKAVEMLEALRNNDNDAVWRIWED 244 (316)
T ss_dssp EECCCCH--HHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHTCCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeCCCCH--HHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCCCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554433 2344444332 344 4443322100 112234566778998877665544
Q ss_pred H
Q 020005 277 A 277 (332)
Q Consensus 277 ~ 277 (332)
+
T Consensus 245 l 245 (316)
T 3e96_A 245 I 245 (316)
T ss_dssp H
T ss_pred H
Confidence 3
No 442
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=20.27 E-value=2.1e+02 Score=25.33 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=15.8
Q ss_pred HHHHHHHHHH-cCCcEEEEeCCC
Q 020005 154 LRRKRVFLEK-AGARCIVMPCHL 175 (332)
Q Consensus 154 l~~~~~~Le~-~Gad~IvI~CNT 175 (332)
+.+.++.+++ +|+|.|-+-.+.
T Consensus 113 ~~~~a~~~~~~~g~d~iei~~~~ 135 (311)
T 1ep3_A 113 YVAVCAKIGDAANVKAIELNISC 135 (311)
T ss_dssp HHHHHHHHTTSTTEEEEEEECCS
T ss_pred HHHHHHHHhccCCCCEEEEeCCC
Confidence 3455677777 999999886553
No 443
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=20.25 E-value=1.8e+02 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-hHHHHhhhCCCCeee
Q 020005 156 RKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLH 193 (332)
Q Consensus 156 ~~~~~Le~~Gad~IvI~CNTaH~-~~d~l~~~~~iPii~ 193 (332)
+.++.|++.|++.|=-||..... .+.+|++.+++||..
T Consensus 236 ~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa~ 274 (410)
T 2gl5_A 236 QFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIAT 274 (410)
T ss_dssp HHHHHHGGGCEEEEECSSCSSCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHhcCCCeEECCCChhhHHHHHHHHhhCCCCEEe
Confidence 44567899999998888764332 367888888888764
No 444
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.25 E-value=2.9e+02 Score=25.10 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
.-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 25 ~iD~~~l----~~lv~~li~~Gv~gl~v~GtTGE~ 55 (309)
T 3fkr_A 25 DLDLASQ----KRAVDFMIDAGSDGLCILANFSEQ 55 (309)
T ss_dssp SBCHHHH----HHHHHHHHHTTCSCEEESSGGGTG
T ss_pred CcCHHHH----HHHHHHHHHcCCCEEEECccccCc
Confidence 4566654 445568889999999998888554
No 445
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=20.17 E-value=92 Score=27.51 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=11.8
Q ss_pred HHHHHcCCcEEEEeCCCc
Q 020005 159 VFLEKAGARCIVMPCHLS 176 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTa 176 (332)
+.|++.|+++.-++|...
T Consensus 158 ~~L~~~G~~v~~~~vY~~ 175 (269)
T 3re1_A 158 EQLRERGVGVDYLPLYRR 175 (269)
T ss_dssp HHHHHTTCEEEEEECEEE
T ss_pred HHHHHCCCEEEEEeEEEE
Confidence 456677777777766543
No 446
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=20.06 E-value=3.2e+02 Score=24.38 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 020005 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (332)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvI~CNTaH~ 178 (332)
-|++.+ .+.+++|.+.|++.|++.+.|--.
T Consensus 18 iD~~~l----~~lv~~li~~Gv~gl~~~GttGE~ 47 (289)
T 2yxg_A 18 VDFDGL----EENINFLIENGVSGIVAVGTTGES 47 (289)
T ss_dssp ECHHHH----HHHHHHHHHTTCSEEEESSTTTTG
T ss_pred cCHHHH----HHHHHHHHHCCCCEEEECccccCh
Confidence 455554 445678889999999998887544
No 447
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=20.06 E-value=2.4e+02 Score=22.51 Aligned_cols=76 Identities=8% Similarity=-0.035 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCCcchhhhhhcCCCchhhccccCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 020005 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (332)
Q Consensus 88 GmGp~AT~~~y~kI~~~t~~d~~~~~vi~s~p~ip~~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (332)
|.|...+.+++.++.+..... .+.+|++. --..|........... ....+.+...+.+.+.++.+.+.|+.
T Consensus 62 g~~G~~~~~~~~~~~~~~~~~-~pd~vvi~-~G~ND~~~~~~~~~~~-------~~~~~~~~~~~~l~~~i~~~~~~~~~ 132 (216)
T 3rjt_A 62 GTSGNTVADVARRWEDDVMAL-QPDYVSLM-IGVNDVWRQFDMPLVV-------ERHVGIDEYRDTLRHLVATTKPRVRE 132 (216)
T ss_dssp CCTTCCHHHHHHHHHHHTGGG-CCSEEEEE-CCHHHHHHHHHSTTCG-------GGCCCHHHHHHHHHHHHHHHGGGSSE
T ss_pred CCCCccHHHHHHHHHhHHhhc-CCCEEEEE-eeccccchhhcccccc-------ccCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 777777777777776544433 56777765 1122321111000000 01335677888889999999999999
Q ss_pred EEEEe
Q 020005 168 CIVMP 172 (332)
Q Consensus 168 ~IvI~ 172 (332)
.|++.
T Consensus 133 vil~~ 137 (216)
T 3rjt_A 133 MFLLS 137 (216)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99884
No 448
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=20.04 E-value=3.7e+02 Score=23.66 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=18.6
Q ss_pred HHHHHcCCcEEEEeCCCc-hhhHHHHhh---hCCCCeeechH
Q 020005 159 VFLEKAGARCIVMPCHLS-HIWHDEVCK---GCSVPFLHVSE 196 (332)
Q Consensus 159 ~~Le~~Gad~IvI~CNTa-H~~~d~l~~---~~~iPii~Ive 196 (332)
+.+++.++|+|+ |++-. ..+...+++ ..++|+++--.
T Consensus 66 ~~~~~~~~d~vi-~~~~~~~~~~a~~~~~l~~~g~~~~~~~~ 106 (331)
T 2pn1_A 66 TLCQDEGVTALL-TLIDPELGLLAQATERFQAIGVTVIVSPY 106 (331)
T ss_dssp HHHHHHTCCEEE-ESSHHHHHHHHHTHHHHHTTTCEECCCCH
T ss_pred HHHHHcCCCEEE-eCCchhHHHHHHHHHHHHhCCcEEecCCH
Confidence 345567899764 55421 112333333 33787765533
No 449
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=20.03 E-value=1.9e+02 Score=23.00 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch-h---hHHHHhhhCCCCeeec
Q 020005 155 RRKRVFLEKAGARCIVMPCHLSH-I---WHDEVCKGCSVPFLHV 194 (332)
Q Consensus 155 ~~~~~~Le~~Gad~IvI~CNTaH-~---~~d~l~~~~~iPii~I 194 (332)
.+..+.+++..|.+++|+.|... . ++..+.+..+||++-+
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v 73 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSV 73 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEE
Confidence 44566788889999999999843 3 3567777779998854
Done!