BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020007
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HJH|A Chain A, Iodide Sad Phased Crystal Structure Of A
           Phosphoglucomutase From Brucella Melitensis Complexed
           With Glucose-6-Phosphate
 pdb|4HJH|B Chain B, Iodide Sad Phased Crystal Structure Of A
           Phosphoglucomutase From Brucella Melitensis Complexed
           With Glucose-6-Phosphate
          Length = 481

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 137 RYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPV 188
           RY+  L +G+ N   + +  +S   + L  YLL  + +EP  L +  +  PV
Sbjct: 166 RYAGFLGKGSLNGLRVGVYQHSSVARDLLMYLLTTLGVEPVALGRSDIFVPV 217


>pdb|2L5P|A Chain A, Solution Nmr Structure Of Protein Lipocalin 12 From Rat
           Epididymis
          Length = 184

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 185 QFPVFPNAFLVGGS-------ADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMT 237
           Q P  P  F    S        ++FV+ +AD   K +  P+L  +++  K+    E ++T
Sbjct: 3   QSPTMPQGFSQMTSFQSNKFQGEWFVLGLADNTYKREHRPLLHSFITLFKLRDNSEFQVT 62

Query: 238 TS-TRLKTC---LYSFTSPGGPMYPTRAVRHAA 266
            S TR K C    Y+      P   TR  R + 
Sbjct: 63  NSMTRGKHCSTWSYTLIPTNKPGQFTRDNRGSG 95


>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
 pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
 pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
 pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
          Length = 513

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 27  LQRALASPSQRRNLLQELFADI---ALEVDDR--ARDIILSGEEGGICPAEDGIDSRLCF 81
           L RAL  P +R  +L    ADI    +  +DR  A D +L+ +        DG++     
Sbjct: 333 LYRALDGPERR--ILTGYGADIPLGGMHREDRLPALDTVLAHDMATF----DGLNEMSPV 386

Query: 82  YDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSA 141
              LA H+   P   + +LDL+V L + L   H       KW+    + +         A
Sbjct: 387 LSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHG----RDKWVLRAAMAD---------A 433

Query: 142 LVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALE 175
           L     N   + +   S    S  R LL+    E
Sbjct: 434 LPAETVNRPKLGVHEGSGTTSSFSRLLLDHGVAE 467


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,555,971
Number of Sequences: 62578
Number of extensions: 378470
Number of successful extensions: 852
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 6
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)