Query 020007
Match_columns 332
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 06:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00170 cpcA phycocyanin alph 68.7 3.1 6.7E-05 37.6 1.8 19 248-266 65-83 (162)
2 TIGR01338 phycocy_alpha phycoc 66.4 3.9 8.3E-05 36.9 1.9 19 248-266 64-82 (161)
3 cd03572 ENTH_epsin_related ENT 57.7 13 0.00029 32.0 3.6 21 256-276 100-120 (122)
4 PF11707 Npa1: Ribosome 60S bi 55.4 1.1E+02 0.0023 29.6 9.6 101 203-310 160-300 (330)
5 PF07216 LcrG: LcrG protein; 50.0 25 0.00054 29.8 3.9 39 23-63 10-48 (93)
6 COG4114 FhuF Uncharacterized F 40.8 60 0.0013 31.7 5.4 71 82-156 59-132 (251)
7 PRK04330 hypothetical protein; 40.6 20 0.00043 30.0 2.0 41 238-278 7-47 (88)
8 CHL00172 cpeB phycoerythrin be 38.2 26 0.00057 32.3 2.5 23 248-271 65-87 (177)
9 COG5186 PAP1 Poly(A) polymeras 37.6 23 0.0005 37.0 2.3 50 244-300 221-272 (552)
10 PRK10647 ferric iron reductase 34.8 36 0.00079 32.8 3.0 69 81-154 69-142 (262)
11 CHL00173 cpeA phycoerythrin al 33.6 36 0.00079 30.8 2.6 23 248-271 65-87 (164)
12 PF03685 UPF0147: Uncharacteri 33.2 24 0.00051 29.4 1.3 39 240-278 6-44 (85)
13 COG1698 Uncharacterized protei 33.1 31 0.00067 29.3 2.0 25 256-280 29-53 (93)
14 PF12491 ApoB100_C: Apolipopro 32.1 32 0.0007 27.0 1.8 44 81-127 9-52 (58)
15 COG3687 Predicted metal-depend 31.3 45 0.00097 33.0 3.0 37 247-285 21-57 (280)
16 TIGR01339 phycocy_beta phycocy 29.7 36 0.00078 31.1 2.0 23 248-271 63-85 (170)
17 PF04648 MF_alpha: Yeast matin 29.2 28 0.0006 20.3 0.7 7 251-257 7-13 (13)
18 PF08628 Nexin_C: Sorting nexi 28.7 1.3E+02 0.0029 24.3 5.0 72 200-291 21-108 (113)
19 PRK02866 cyanate hydratase; Va 27.4 1.3E+02 0.0028 27.1 5.0 47 51-104 58-105 (147)
20 cd06845 Bcl-2_like Apoptosis r 27.0 63 0.0014 27.2 2.9 81 10-107 33-124 (144)
21 cd08049 TAF8 TATA Binding Prot 26.0 1.2E+02 0.0027 22.3 3.9 44 182-225 3-53 (54)
22 cd06931 NR_LBD_HNF4_like The l 25.7 94 0.002 27.6 3.9 71 204-274 119-205 (222)
23 cd03562 CID CID (CTD-Interacti 24.1 2.2E+02 0.0048 22.8 5.4 80 14-113 33-112 (114)
24 PF02338 OTU: OTU-like cystein 24.1 1.1E+02 0.0024 24.1 3.6 33 75-108 2-38 (121)
25 TIGR02573 LcrG_PcrG type III s 23.0 1E+02 0.0022 26.1 3.3 38 23-62 7-44 (90)
26 PF12464 Mac: Maltose acetyltr 23.0 82 0.0018 22.4 2.4 28 21-48 25-53 (55)
27 KOG2089 Metalloendopeptidase f 21.8 1.7E+02 0.0037 32.4 5.4 108 17-142 558-676 (718)
28 PF11880 DUF3400: Domain of un 20.9 58 0.0012 24.5 1.3 29 196-227 8-36 (45)
29 PF12022 DUF3510: Domain of un 20.6 4E+02 0.0087 22.6 6.5 57 6-62 27-85 (125)
30 PRK06718 precorrin-2 dehydroge 20.4 2E+02 0.0043 26.0 4.9 30 23-52 158-187 (202)
31 CHL00086 apcA allophycocyanin 20.4 80 0.0017 28.4 2.3 22 249-271 65-86 (161)
32 KOG3745 Exocyst subunit - Sec1 20.1 6.6E+02 0.014 28.4 9.4 123 11-144 461-597 (763)
No 1
>CHL00170 cpcA phycocyanin alpha subunit; Reviewed
Probab=68.68 E-value=3.1 Score=37.59 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.4
Q ss_pred ccCCCCCCCCCChHHHHHH
Q 020007 248 SFTSPGGPMYPTRAVRHAA 266 (332)
Q Consensus 248 SfTsPGgP~Y~pR~VR~aA 266 (332)
.+|+|||++|++|.+|.||
T Consensus 65 ~l~~pgGn~y~~~~~~~aa 83 (162)
T CHL00170 65 YTTQMPGPTYASSAIGKAK 83 (162)
T ss_pred CcCCCCCCccccchhHHHH
Confidence 4699999999999987765
No 2
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=66.36 E-value=3.9 Score=36.89 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.0
Q ss_pred ccCCCCCCCCCChHHHHHH
Q 020007 248 SFTSPGGPMYPTRAVRHAA 266 (332)
Q Consensus 248 SfTsPGgP~Y~pR~VR~aA 266 (332)
.+|+|||++|++|.+|.+|
T Consensus 64 ~~~~pgGn~y~~~~~~~aa 82 (161)
T TIGR01338 64 YTTQMNGPNYASTATGKAK 82 (161)
T ss_pred CcCCCCCCCccchhhHHHH
Confidence 3599999999999986655
No 3
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=57.72 E-value=13 Score=32.04 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.6
Q ss_pred CCCChHHHHHHHHhhhhhcCC
Q 020007 256 MYPTRAVRHAAWDALDFLFPV 276 (332)
Q Consensus 256 ~Y~pR~VR~aA~~~LD~LFP~ 276 (332)
.-+-..||.+|.++++++|..
T Consensus 100 d~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred cchhHHHHHHHHHHHHHHhcc
Confidence 445677999999999999964
No 4
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=55.41 E-value=1.1e+02 Score=29.57 Aligned_cols=101 Identities=25% Similarity=0.362 Sum_probs=72.7
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHh--hhhcCCccccchhhh---------HhhhhhccCCCCCCCCCChHHHHHHHHhhh
Q 020007 203 VIEVADQLQKLKVEPVLLHYLSQI--KVLQGMELRMTTSTR---------LKTCLYSFTSPGGPMYPTRAVRHAAWDALD 271 (332)
Q Consensus 203 V~ev~dqL~~iK~E~vLlhYL~~~--~~lkg~eL~~tT~~R---------LqacLYSfTsPGgP~Y~pR~VR~aA~~~LD 271 (332)
+..+.+.|.+ +..+++...|+-+ .|+++-.++.+|+.+ |.+ ||+...+ -..++|+.+|-+-|-
T Consensus 160 ~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~-Ly~~~~~----~~~~~~~~~vh~fL~ 233 (330)
T PF11707_consen 160 MSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS-LYSRDGE----DEKSSVADLVHEFLL 233 (330)
T ss_pred HHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH-HhcccCC----cccchHHHHHHHHHH
Confidence 7888888888 8888888888877 478887877777765 555 8988877 556779999999886
Q ss_pred h---------hcCC-CCccH-------------------HHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 020007 272 F---------LFPV-GQYPR-------------------HVISLFFRLLYPWCWPSSCWNFIMSWLKA 310 (332)
Q Consensus 272 ~---------LFP~-Gr~~R-------------------h~VslfFRLLhPyywp~S~wn~i~~~ik~ 310 (332)
. +||+ |=|+| .++.-|-+.|.||.-+. -.+-++++.++
T Consensus 234 ~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~-q~~Lvl~Il~~ 300 (330)
T PF11707_consen 234 ALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDR-QQELVLKILKA 300 (330)
T ss_pred HHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHH-HHHHHHHHHHH
Confidence 5 4663 33333 56677777899999773 45555555544
No 5
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=49.97 E-value=25 Score=29.85 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcC
Q 020007 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSG 63 (332)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~~ 63 (332)
+.++-..||+...+|..|++|+.+++ -|++.+-+.+++.
T Consensus 10 ti~~AE~AI~dsd~R~~llqEm~~gL--g~~p~ag~lLf~~ 48 (93)
T PF07216_consen 10 TIEQAELAIRDSDHRNDLLQEMLEGL--GLGPVAGELLFGG 48 (93)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCChhHHHHHhcC
Confidence 34556789999999999999999998 6788888888766
No 6
>COG4114 FhuF Uncharacterized Fe-S protein [General function prediction only]
Probab=40.81 E-value=60 Score=31.70 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=41.8
Q ss_pred HHHHHHHhh-hCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHhHhcCCchhhhhhhhHHhhcccc--eeeeeccc
Q 020007 82 YDVLADHYV-RMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATN--VFWIDIQT 156 (332)
Q Consensus 82 Y~vLA~yy~-~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfe~~l~~~e~~lr~~n~lv~GAtn--lFW~Di~s 156 (332)
-++-+|||+ ++|..-+. .-..+||||-|++.+=-=+.+--++..+.=. +.-.|.-+.-+-.+. .||.|+.-
T Consensus 59 ~~~y~dh~y~d~~~~pr~--k~laSlwSqwY~glmtpP~mlal~l~~qal~--~~~en~~v~fhetgr~~~f~~~~~~ 132 (251)
T COG4114 59 LAVYSDHYYGDQPGMPRE--KALASLWSQWYFGLMTPPLMLALLLQEQALD--VSPENFHVEFHETGRPACFYVDVCE 132 (251)
T ss_pred HHhhhhhhhccCCCCchH--HHHHHHHHHHHHHhhhHHHHHHHHHhhhccC--CChHHeEEEeccCCCcceEEeeecc
Confidence 345566777 55555444 6678999999998875544444444443222 233444444443334 89999853
No 7
>PRK04330 hypothetical protein; Provisional
Probab=40.63 E-value=20 Score=30.00 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.1
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 020007 238 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 278 (332)
Q Consensus 238 T~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr 278 (332)
...++|.|++=+..=-.=.=+||-+|+||-++.+.|-=.+.
T Consensus 7 ~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~ 47 (88)
T PRK04330 7 NEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEE 47 (88)
T ss_pred hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCc
Confidence 44567777777766666667899999999999999976554
No 8
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=38.21 E-value=26 Score=32.27 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.4
Q ss_pred ccCCCCCCCCCChHHHHHHHHhhh
Q 020007 248 SFTSPGGPMYPTRAVRHAAWDALD 271 (332)
Q Consensus 248 SfTsPGgP~Y~pR~VR~aA~~~LD 271 (332)
.+|.|||++|++|. ..|.++=+|
T Consensus 65 ~l~~pGGn~y~~~r-~aaClRD~~ 87 (177)
T CHL00172 65 GLISPGGNCYTNRR-MAACLRDGE 87 (177)
T ss_pred CCCCCCCCCCcHHH-HHHHHHHHH
Confidence 47999999999998 666666554
No 9
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=37.62 E-value=23 Score=37.02 Aligned_cols=50 Identities=24% Similarity=0.631 Sum_probs=33.4
Q ss_pred hhhhc--cCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHhhcccCCcchh
Q 020007 244 TCLYS--FTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSC 300 (332)
Q Consensus 244 acLYS--fTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr~~Rh~VslfFRLLhPyywp~S~ 300 (332)
.|.|. |--|||-++.-=- .-.=.|+|. .-|--.|+=||++||-|.||.-+
T Consensus 221 RavYaN~~GfpGGVAwam~V------ARiCQLYPN-A~S~vIv~kFF~ils~WnWPqPv 272 (552)
T COG5186 221 RAVYANPYGFPGGVAWAMCV------ARICQLYPN-ASSFVIVCKFFEILSSWNWPQPV 272 (552)
T ss_pred hhhhccccCCcchHHHHHHH------HHHHhhccC-cchHhHHHHHHHHHHhcCCCCCe
Confidence 57775 4457774332111 113479994 55667899999999999999753
No 10
>PRK10647 ferric iron reductase involved in ferric hydroximate transport; Provisional
Probab=34.77 E-value=36 Score=32.82 Aligned_cols=69 Identities=25% Similarity=0.447 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhCCcchhhHHHHHHHHhhhhhHHHH-----HHHHHHHHHHhHhcCCchhhhhhhhHHhhcccceeeeec
Q 020007 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHI-----FALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDI 154 (332)
Q Consensus 81 fY~vLA~yy~~vPe~~~~~l~L~~qLwsq~~~~~I-----falLF~~WLfe~~l~~~e~~lr~~n~lv~GAtnlFW~Di 154 (332)
.=+..+++|+..-+.+.+-+.-+.+||+|-|++.+ ++++-+..-+....++--+.+. -+|--..||+|.
T Consensus 69 lL~~y~~~~~~~~~~~~~~~ral~SlWsk~Yf~ll~pp~l~a~l~~~~~L~l~~~~~~v~~~-----~~G~P~~~~~~~ 142 (262)
T PRK10647 69 LLAVYSDHIYRNQPTLKRENKPLYSLWAQWYIGLMVPPLMLALLTQPQALDVSPEHFHVEFH-----ETGRAACFWYDV 142 (262)
T ss_pred HHHHHHHHhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEeC-----CCCCcceEEecc
Confidence 44456667766655567777889999999988873 3333333322222222111111 136667999999
No 11
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=33.63 E-value=36 Score=30.80 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.2
Q ss_pred ccCCCCCCCCCChHHHHHHHHhhh
Q 020007 248 SFTSPGGPMYPTRAVRHAAWDALD 271 (332)
Q Consensus 248 SfTsPGgP~Y~pR~VR~aA~~~LD 271 (332)
.+|.|||+.|++|. ..|.|+-+|
T Consensus 65 ~l~~pGG~~y~~~r-~aaC~RD~~ 87 (164)
T CHL00173 65 YLKNPGEAGDSQEK-VNKCYRDVD 87 (164)
T ss_pred CCCCCCCCCccchH-HHHHHHHHH
Confidence 47999999999998 666666554
No 12
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=33.25 E-value=24 Score=29.38 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=26.1
Q ss_pred hhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 020007 240 TRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 278 (332)
Q Consensus 240 ~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr 278 (332)
.++|.|++=+..--.=.=.||-||++|-++.|.|-=.|.
T Consensus 6 ~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~ 44 (85)
T PF03685_consen 6 EKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEE 44 (85)
T ss_dssp HHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 455555555544444455799999999999999987766
No 13
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.13 E-value=31 Score=29.28 Aligned_cols=25 Identities=32% Similarity=0.330 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHhhhhhcCCCCcc
Q 020007 256 MYPTRAVRHAAWDALDFLFPVGQYP 280 (332)
Q Consensus 256 ~Y~pR~VR~aA~~~LD~LFP~Gr~~ 280 (332)
.=+||-||+||-++.+.|--.|.-|
T Consensus 29 ttVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 29 TTVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred ccccHHHHHHHHHHHHHHhCCCCCc
Confidence 3479999999999999998777654
No 14
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=32.11 E-value=32 Score=27.02 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 020007 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEV 127 (332)
Q Consensus 81 fY~vLA~yy~~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfe~ 127 (332)
||+.|++||-+.-.+++++.+|-.|=+. ++..|-+=+-+||-..
T Consensus 9 ~sdqls~~yEK~IaeskrLIDLsIqnY~---~Fl~yi~eLL~~lq~a 52 (58)
T PF12491_consen 9 FSDQLSDYYEKFIAESKRLIDLSIQNYH---MFLRYITELLKELQSA 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999887442 3344444444555443
No 15
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=31.33 E-value=45 Score=33.01 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=30.7
Q ss_pred hccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHH
Q 020007 247 YSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVIS 285 (332)
Q Consensus 247 YSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr~~Rh~Vs 285 (332)
++||.-+++-.+--+|+..-+++|-.|||.|. |++|.
T Consensus 21 Fd~s~~p~hw~~G~p~~T~vfNaLs~LlP~GE--~fFvd 57 (280)
T COG3687 21 FDLSDTPRHWVPGEPVATHVFNALSLLLPAGE--RFFVD 57 (280)
T ss_pred CccCCCCCCCCCCChHHHHHHHHHHHhccchh--HHHHH
Confidence 67888777777888899999999999999995 44443
No 16
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=29.66 E-value=36 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=17.3
Q ss_pred ccCCCCCCCCCChHHHHHHHHhhh
Q 020007 248 SFTSPGGPMYPTRAVRHAAWDALD 271 (332)
Q Consensus 248 SfTsPGgP~Y~pR~VR~aA~~~LD 271 (332)
..|+|||++|+||. ..|.|+=+|
T Consensus 63 ~l~~pGG~~y~~~r-~~aClRD~~ 85 (170)
T TIGR01339 63 QLIAPGGNAYTSRR-MAACLRDME 85 (170)
T ss_pred CCCCCCCCCCcHHH-HHHHHhhcc
Confidence 35899999999998 556665444
No 17
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=29.17 E-value=28 Score=20.30 Aligned_cols=7 Identities=86% Similarity=1.668 Sum_probs=6.0
Q ss_pred CCCCCCC
Q 020007 251 SPGGPMY 257 (332)
Q Consensus 251 sPGgP~Y 257 (332)
+||-|||
T Consensus 7 ~~GqP~Y 13 (13)
T PF04648_consen 7 SPGQPMY 13 (13)
T ss_pred cCCCcCC
Confidence 6899988
No 18
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=28.73 E-value=1.3e+02 Score=24.32 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=47.6
Q ss_pred chhHHHHHHHhhhhcchhHHHHHHHHhhhhcCCccccchhhhHhhhhhccCCCCC---CCCCChH------HHHHHHHhh
Q 020007 200 DFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGG---PMYPTRA------VRHAAWDAL 270 (332)
Q Consensus 200 D~FV~ev~dqL~~iK~E~vLlhYL~~~~~lkg~eL~~tT~~RLqacLYSfTsPGg---P~Y~pR~------VR~aA~~~L 270 (332)
|.+=+-+-+++..+..|+.+.+||...+-. +. ||| |.++||. -|..|.+.|
T Consensus 21 ~tI~r~i~~~v~~l~se~~v~~~i~~l~~~----------------lw----P~g~~~~~~~~Rt~~ek~~tr~~A~~~L 80 (113)
T PF08628_consen 21 STIERKIRDQVEWLTSEEQVARYIQLLRES----------------LW----PNGKLAEPPPPRTEEEKLRTRQEARELL 80 (113)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHh----------------hC----CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 566667788888999999999999876431 11 444 2233432 677888899
Q ss_pred hhhcCC------CC-ccHHHHHHHHHhh
Q 020007 271 DFLFPV------GQ-YPRHVISLFFRLL 291 (332)
Q Consensus 271 D~LFP~------Gr-~~Rh~VslfFRLL 291 (332)
..++|+ |+ -.|.-+..+|..|
T Consensus 81 ~~~~P~~l~~vvG~~~~~~g~~~if~~L 108 (113)
T PF08628_consen 81 LSLLPDTLKKVVGSENSRRGARRIFEML 108 (113)
T ss_pred HHhcHHHHHHccCHHHHHHHHHHHHHHH
Confidence 888884 33 3455555555544
No 19
>PRK02866 cyanate hydratase; Validated
Probab=27.38 E-value=1.3e+02 Score=27.11 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=29.4
Q ss_pred hhchHHHHhhhcCCCCCCCCcccCCCccch-HHHHHHHHhhhCCcchhhHHHHHH
Q 020007 51 EVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADHYVRMPESGQRILDLIV 104 (332)
Q Consensus 51 ~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fY~vLA~yy~~vPe~~~~~l~L~~ 104 (332)
.+|+.+..++..--.-+..+..--.|+-+| |||++..| |..+-.||+
T Consensus 58 gL~~~~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY-------G~~~K~~i~ 105 (147)
T PRK02866 58 GLDEDAVALLQEVPYRGSLPPAVPTDPLIYRFYEMVQVY-------GTTLKALIH 105 (147)
T ss_pred CCCHHHHHHHhcCCcCCCCCCCCCCCcHHHHHHHHHHHh-------hHHHHHHHH
Confidence 788887776665433332222233477888 99999988 455555554
No 20
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=27.02 E-value=63 Score=27.24 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCchhHH----HHHHHHHhhhhhhhchHHHHhhhcCCCC-CCCCcccCCCccch----
Q 020007 10 HRGSAYLNALTQEIEKKLQRALASPSQRR----NLLQELFADIALEVDDRARDIILSGEEG-GICPAEDGIDSRLC---- 80 (332)
Q Consensus 10 ~~~s~~~~~L~~ei~kkL~~Al~s~~qr~----~ll~eLFaDial~vDdra~~~i~~~~~d-~Is~~~~~~~~~~c---- 80 (332)
...+.-+.+++.|+|+|.+.++..-.++. ..-.+.|..|+-++ + +| +|.= ||+.
T Consensus 33 ~~~~~~Lr~~~dele~~~~~~f~~~~~~l~~~~~~~~~~f~~v~~~l--------f---~dg~inW------GRIval~~ 95 (144)
T cd06845 33 SEVAETLRRVGDELEEKHRRLFENMCRQLNISPDNAYEVFQEVAREL--------F---EDGGINW------GRIVALFA 95 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--------h---ccCCCCh------HHHHHHHH
Confidence 34556778888999998888776544442 22233333332221 1 11 2222 2433
Q ss_pred HHHHHHHHhhhC--CcchhhHHHHHHHHh
Q 020007 81 FYDVLADHYVRM--PESGQRILDLIVQLW 107 (332)
Q Consensus 81 fY~vLA~yy~~v--Pe~~~~~l~L~~qLw 107 (332)
|=-.||.+.+.. |+-++.+...+.+.-
T Consensus 96 f~~~la~~~~~~~~~~~v~~i~~~~~~fi 124 (144)
T cd06845 96 FGGRLAVKCVEQGLPELVRSIAEWTSDFL 124 (144)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 556788888733 666666665554443
No 21
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=25.96 E-value=1.2e+02 Score=22.34 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCccCCCCCCc-------ccccCCcchhHHHHHHHhhhhcchhHHHHHHHH
Q 020007 182 IPVQFPVFPNA-------FLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQ 225 (332)
Q Consensus 182 ipvqFp~f~n~-------~lvgg~aD~FV~ev~dqL~~iK~E~vLlhYL~~ 225 (332)
||.-+|.||.. .......|.-.+-.-..-+..++|..|.+.+.+
T Consensus 3 IP~~LP~FP~~HTY~~Tp~~~~~~~d~~~~r~~~~~~~r~~e~aL~~l~~~ 53 (54)
T cd08049 3 IPSWLPPFPDPHTYKRTPTYSERETDPKKLREELASQRRLAEKALLRLQQK 53 (54)
T ss_pred CCcCCCCCCCchhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888874 223356788777777777899999999988654
No 22
>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes. The ligand binding domain of hepatocyte nuclear factor 4 (HNF4) like proteins: HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is constitutively active as a transcription activator. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, HNF4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal lig
Probab=25.74 E-value=94 Score=27.65 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=48.3
Q ss_pred HHHHHHhhhhcchhHHHHHHHHhhhhc----CC---ccccchhhhHhhhhhccCCCCCCCCCCh---------HHHHHHH
Q 020007 204 IEVADQLQKLKVEPVLLHYLSQIKVLQ----GM---ELRMTTSTRLKTCLYSFTSPGGPMYPTR---------AVRHAAW 267 (332)
Q Consensus 204 ~ev~dqL~~iK~E~vLlhYL~~~~~lk----g~---eL~~tT~~RLqacLYSfTsPGgP~Y~pR---------~VR~aA~ 267 (332)
.++++.+..++..++=.-+|..+.+|. |+ +.-..-+.+++.||..+..-..|.++.| .+|+.++
T Consensus 119 ~~~~~~l~~L~l~~~E~~lLkaiil~~p~~~~ls~~~~i~~~r~~~~~aL~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~ 198 (222)
T cd06931 119 DELVLPLRDLNIDDNEYACLKAIVFFDPDAKGLSDPQKIKRLRFQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITW 198 (222)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 467788887777666666677776664 22 1122344567788988876566777777 6888888
Q ss_pred Hhhhhhc
Q 020007 268 DALDFLF 274 (332)
Q Consensus 268 ~~LD~LF 274 (332)
+..+.+|
T Consensus 199 ~~~e~l~ 205 (222)
T cd06931 199 QMIEQIQ 205 (222)
T ss_pred HHHHHHh
Confidence 8777765
No 23
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.11 E-value=2.2e+02 Score=22.77 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcCCCCCCCCcccCCCccchHHHHHHHHhhhCC
Q 020007 14 AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMP 93 (332)
Q Consensus 14 ~~~~~L~~ei~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~~~~d~Is~~~~~~~~~~cfY~vLA~yy~~vP 93 (332)
.+-..+..-+++.++++ .+.|+..++ -|-+||......++..... ..+.+++.+=|..+|
T Consensus 33 ~~a~~iv~~i~~~i~~~--~~~~KL~~L-YL~dsIvkn~~~~~~~~~~-----------------~~~~~~f~~~~~~~~ 92 (114)
T cd03562 33 KHAKEIVEIIEKHIKKC--PPEQKLPLL-YLLDSIVKNVGRKYKEFFS-----------------EFLVPLFLDAYEKVD 92 (114)
T ss_pred HHHHHHHHHHHHHHHhC--CcccchHHH-HHHHHHHHHcccchHHHHH-----------------HHHHHHHHHHHHhCC
Confidence 34445556666666555 345665544 4667777766666554221 134778888888999
Q ss_pred cchhhHHHHHHHHhhhhhHH
Q 020007 94 ESGQRILDLIVQLWSQLFVS 113 (332)
Q Consensus 94 e~~~~~l~L~~qLwsq~~~~ 113 (332)
++.+.=+.=+...|.+...+
T Consensus 93 ~~~r~kl~rl~~iW~~~~~f 112 (114)
T cd03562 93 EKTRKKLERLLNIWEERFVF 112 (114)
T ss_pred HHHHHHHHHHHHHccCCCCC
Confidence 99998888888999887543
No 24
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=24.06 E-value=1.1e+02 Score=24.15 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=28.2
Q ss_pred CCccchHHHHHHHHhh----hCCcchhhHHHHHHHHhh
Q 020007 75 IDSRLCFYDVLADHYV----RMPESGQRILDLIVQLWS 108 (332)
Q Consensus 75 ~~~~~cfY~vLA~yy~----~vPe~~~~~l~L~~qLws 108 (332)
.||. |+|.-+|+-.. ...+..+.|+..|++--.
T Consensus 2 gDGn-ClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~ 38 (121)
T PF02338_consen 2 GDGN-CLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLR 38 (121)
T ss_dssp SSTT-HHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHH
T ss_pred CCcc-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4666 99999999999 888999999999976654
No 25
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=23.05 E-value=1e+02 Score=26.12 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhc
Q 020007 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILS 62 (332)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~ 62 (332)
+...-..||+...+|..|++|+.+++.+ -+.+-+.|++
T Consensus 7 tl~~AElAI~dsd~R~~llqEm~~gLgl--~p~ag~~Lf~ 44 (90)
T TIGR02573 7 TLQAAELAIRDSDERNDLLQEMWQGLGL--GPVAGEVLFG 44 (90)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHcCC--ChHHHHHHHc
Confidence 3345578999999999999999998764 3455555555
No 26
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=23.01 E-value=82 Score=22.36 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHhhh
Q 020007 21 QEIEKKLQRALA-SPSQRRNLLQELFADI 48 (332)
Q Consensus 21 ~ei~kkL~~Al~-s~~qr~~ll~eLFaDi 48 (332)
++...+.+..-. ...+|.+||++||..+
T Consensus 25 ~~l~~~~N~~~~~d~~~r~~llk~l~g~~ 53 (55)
T PF12464_consen 25 KRLLQRYNQTPPEDPEERQELLKELFGSV 53 (55)
T ss_dssp HHHHHHHHHSHTTTHHHHHHHHHHHSSBE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhhc
Confidence 333444444433 4599999999999754
No 27
>KOG2089 consensus Metalloendopeptidase family - saccharolysin & thimet oligopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.81 E-value=1.7e+02 Score=32.45 Aligned_cols=108 Identities=29% Similarity=0.395 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhhhhchH----HHHhhhcC-CCCCCCCcccCCCccchHHHHHH-----
Q 020007 17 NALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDR----ARDIILSG-EEGGICPAEDGIDSRLCFYDVLA----- 86 (332)
Q Consensus 17 ~~L~~ei~kkL~~Al~s~~qr~~ll~eLFaDial~vDdr----a~~~i~~~-~~d~Is~~~~~~~~~~cfY~vLA----- 86 (332)
+.|+.|+-+||.++.-.++-=..+=|..|+|+-++|-.- ..+.+.+. .+=.+.|.....+++-||=++.|
T Consensus 558 e~l~eEl~~kl~~~r~~~~gl~tlrqL~~a~~D~~lht~~d~~~~~~~~~l~~~i~~~p~~~~d~~pcsF~hifa~gy~A 637 (718)
T KOG2089|consen 558 EPLPEELLKKLILTRTVNAGLFTLRQLVLADFDLELHTKTDADLADTYRQLCQEISIVPATPGDNMPCSFGHIFAGGYAA 637 (718)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccchHHHHHHhchhheecCCCCCCCCCccccchhcCchHH
Confidence 368899999999888777766666677789998887322 22333333 23344666666666766988887
Q ss_pred HHhhhCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHhHhcCCc-hhhhhhhhHH
Q 020007 87 DHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNND-EVLLRYSSAL 142 (332)
Q Consensus 87 ~yy~~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfe~~l~~~-e~~lr~~n~l 142 (332)
.|| -.||+.-+++-||+.-|-+ --.+|. ++-.||=|.+
T Consensus 638 ~yY--------------~yLWsEv~aaDif~t~fe~----~g~~N~~~~G~ryR~ti 676 (718)
T KOG2089|consen 638 GYY--------------SYLWSEVLAADIFSTFFEQ----EGEDNIKEVGMRYRNTI 676 (718)
T ss_pred HHH--------------HHHHHHHHHHHHHHHHhhh----cCCccHHHHHHHHHHhh
Confidence 444 3689999999999987642 223333 5556665543
No 28
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=20.91 E-value=58 Score=24.52 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=22.9
Q ss_pred cCCcchhHHHHHHHhhhhcchhHHHHHHHHhh
Q 020007 196 GGSADFFVIEVADQLQKLKVEPVLLHYLSQIK 227 (332)
Q Consensus 196 gg~aD~FV~ev~dqL~~iK~E~vLlhYL~~~~ 227 (332)
|..+|+.|.|++++| --|.-+..|+.++.
T Consensus 8 ~~~aDYIVVEmA~~l---LGe~W~~~~v~~a~ 36 (45)
T PF11880_consen 8 GLEADYIVVEMARHL---LGENWQQDYVERAN 36 (45)
T ss_pred CCccceehHHHHHHH---hhhhHHHHHHHHHH
Confidence 568999999999984 45777778887763
No 29
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=20.61 E-value=4e+02 Score=22.61 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHhhhhhhhchHHHHhhhc
Q 020007 6 SSSTHRGSAYLNALTQEIEKKLQRA--LASPSQRRNLLQELFADIALEVDDRARDIILS 62 (332)
Q Consensus 6 ~~~~~~~s~~~~~L~~ei~kkL~~A--l~s~~qr~~ll~eLFaDial~vDdra~~~i~~ 62 (332)
...|...|.|-..+-+-+..=+... ...++.+.++++.++++++-..-..+.+.|.+
T Consensus 27 k~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~evL~s 85 (125)
T PF12022_consen 27 KPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIASEVLTS 85 (125)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778888887766665544444 34678899999999999999999998887766
No 30
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.44 E-value=2e+02 Score=25.96 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhh
Q 020007 23 IEKKLQRALASPSQRRNLLQELFADIALEV 52 (332)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFaDial~v 52 (332)
+.++++..+..+++|++++++++.|=.+..
T Consensus 158 ~R~~~k~~~~~~~~R~~~~~~~~~~~~~~~ 187 (202)
T PRK06718 158 CRQKIKELQIEKREKQILLQEVLSSEYLNE 187 (202)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhhhhhh
Confidence 334444445567899999999987655443
No 31
>CHL00086 apcA allophycocyanin alpha subunit
Probab=20.40 E-value=80 Score=28.39 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=16.0
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 020007 249 FTSPGGPMYPTRAVRHAAWDALD 271 (332)
Q Consensus 249 fTsPGgP~Y~pR~VR~aA~~~LD 271 (332)
.++|||+.|++|. ..|.|.=++
T Consensus 65 l~~~gG~~y~~~r-~~aC~RD~~ 86 (161)
T CHL00086 65 IVSPGGNAYGEEM-TATCLRDLD 86 (161)
T ss_pred CcCCCCCCccHHH-HHHHHHHHH
Confidence 5899999999987 455555443
No 32
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=6.6e+02 Score=28.36 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhc-C-chh-HHHHHHHHHhhhhhhhchHHHHhhhcCCCCCCCCcccCCCccchHHHHHHH
Q 020007 11 RGSAYLNALTQEIEKKLQRALA-S-PSQ-RRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLAD 87 (332)
Q Consensus 11 ~~s~~~~~L~~ei~kkL~~Al~-s-~~q-r~~ll~eLFaDial~vDdra~~~i~~~~~d~Is~~~~~~~~~~cfY~vLA~ 87 (332)
-+.++-..+-+|+..++.||-. . ++. =++++ ++|.=+-..+-+..-+.-+..---+||+.+.++++.++|.++++
T Consensus 461 is~dl~~~iLqe~kes~~Ra~~l~~~~dlp~~~l-~i~~iLl~~L~~~hv~~ale~a~~~is~a~~~vep~l~Fl~~I~- 538 (763)
T KOG3745|consen 461 ISEDLAIKILQETKESLARAKVLIDPQDLPLNIL-EIFKILLKFLGQEHVDYALETALAGISSADTRVEPNLYFLEVIN- 538 (763)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccccchHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCCCcchHHHHHHH-
Confidence 3567777788899999999866 2 322 22333 55554444444443333333336699999999999999999986
Q ss_pred HhhhCCcchhhHHHHHHHHhhhhhHH------HHHHHHHHHH-----HHhHhcCCchhhhhhhhHHhh
Q 020007 88 HYVRMPESGQRILDLIVQLWSQLFVS------HIFALLFHKW-----IFEVQLNNDEVLLRYSSALVQ 144 (332)
Q Consensus 88 yy~~vPe~~~~~l~L~~qLwsq~~~~------~IfalLF~~W-----Lfe~~l~~~e~~lr~~n~lv~ 144 (332)
.++-|++|+-........+ -+++-...+| ..|-.++ +++-+-+|+++-
T Consensus 539 -------~~~~I~~l~s~~~~~~~iP~i~~t~d~~~~~i~~kk~~i~~iE~~v~--~gL~~tIn~li~ 597 (763)
T KOG3745|consen 539 -------KGDIILQLMSKFFKSELIPLISVTPDKLSEVIQKKKSFIQSIEEKVA--FGLDRTINVLIG 597 (763)
T ss_pred -------HhhHHHHHHHHHHhcccCccccCChhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 5788888888888777665 2566666666 3344443 477888899987
Done!