Query 020007
Match_columns 332
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 10:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imu_A Structural polyprotein 39.8 13 0.00046 26.9 1.8 20 260-279 8-27 (46)
2 2qsb_A UPF0147 protein TA0600; 31.6 20 0.00067 29.0 1.7 41 238-278 8-48 (89)
3 2qzg_A Conserved uncharacteriz 30.5 23 0.00078 28.9 2.0 41 238-278 12-52 (94)
4 3b2a_A TON_1937, putative unch 28.1 1.2E+02 0.0042 28.5 6.6 75 212-292 85-160 (265)
5 3n1e_A Vacuolar protein sortin 27.9 1.6E+02 0.0053 25.1 6.7 49 9-58 47-98 (141)
6 2j96_A Phycoerythrocyanin alph 23.6 41 0.0014 28.7 2.4 14 248-261 65-78 (162)
7 1dw9_A Cyanate lyase; cyanate 23.1 62 0.0021 28.1 3.4 39 50-88 65-104 (156)
8 3o18_A C-phycocyanin alpha sub 22.1 38 0.0013 28.9 1.9 22 249-270 66-88 (162)
9 2pbi_A Regulator of G-protein 20.5 9.1 0.00031 37.4 -2.6 17 285-301 100-116 (424)
10 1kn1_B Allophycocyanin; helix- 20.4 49 0.0017 28.1 2.2 21 249-270 65-85 (161)
11 1v54_H AED, cytochrome C oxida 20.0 43 0.0015 26.3 1.7 25 250-274 13-37 (85)
No 1
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=39.78 E-value=13 Score=26.86 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhhhhcCCCCc
Q 020007 260 RAVRHAAWDALDFLFPVGQY 279 (332)
Q Consensus 260 R~VR~aA~~~LD~LFP~Gr~ 279 (332)
|++|+.|.-++|-|||.-+=
T Consensus 8 r~irr~a~PVvsTlfP~Aap 27 (46)
T 2imu_A 8 RAIRRIAVPVVSTLFPPAAP 27 (46)
T ss_dssp HHHHHHSHHHHHHHCSSTTH
T ss_pred HHHHHhhhhhhhccCCCcch
Confidence 78999999999999997653
No 2
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=31.63 E-value=20 Score=29.02 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=29.8
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 020007 238 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 278 (332)
Q Consensus 238 T~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr 278 (332)
+..++|.|++=+..--.=.=+||-+|+||-++.+.|.=.+.
T Consensus 8 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 48 (89)
T 2qsb_A 8 DQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENE 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTS
T ss_pred cHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 34456666665554444556899999999999999987654
No 3
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=30.50 E-value=23 Score=28.87 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=29.3
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 020007 238 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 278 (332)
Q Consensus 238 T~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr 278 (332)
+..++|.|++=+..--.=.=+||-+|++|-++.+.|.=.+.
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 52 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQ 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTS
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 34456666665544444455899999999999999987554
No 4
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=28.07 E-value=1.2e+02 Score=28.53 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=62.0
Q ss_pred hhcchhHHHHHHHHhhhh-cCCccccchhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHh
Q 020007 212 KLKVEPVLLHYLSQIKVL-QGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRL 290 (332)
Q Consensus 212 ~iK~E~vLlhYL~~~~~l-kg~eL~~tT~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr~~Rh~VslfFRL 290 (332)
+=+.|.|.++=+.-++.+ .|.++..-+=+|+-.+|=+.-+-|.| .+|-.|-++|+.| ++-..+|.++++.|||
T Consensus 85 k~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~-----il~~eaae~Lgkl-kv~~~~~~V~~~l~sL 158 (265)
T 3b2a_A 85 SQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDD-----MMRIETIDVLSKL-QPLEDSKLVRTYINEL 158 (265)
T ss_dssp CSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCH-----HHHHHHHHHHHHC-CBSCCCHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCc-----hHHHHHHHHhCcC-CcccchHHHHHHHHHH
Confidence 446777777777777554 89999999999999999887664332 4889999999999 8888899999999999
Q ss_pred hc
Q 020007 291 LY 292 (332)
Q Consensus 291 Lh 292 (332)
++
T Consensus 159 l~ 160 (265)
T 3b2a_A 159 VV 160 (265)
T ss_dssp HT
T ss_pred Hh
Confidence 96
No 5
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=27.92 E-value=1.6e+02 Score=25.05 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhhhhchHHHH
Q 020007 9 THRGSAYLNALTQEIEKKLQRALA---SPSQRRNLLQELFADIALEVDDRARD 58 (332)
Q Consensus 9 ~~~~s~~~~~L~~ei~kkL~~Al~---s~~qr~~ll~eLFaDial~vDdra~~ 58 (332)
++-.|.|.+.|++|+- |||+||. .++|=+.|...+|+...-.+.+..++
T Consensus 47 ~pvpS~~m~tl~Ke~~-kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~ 98 (141)
T 3n1e_A 47 APVPSPCFRNICKQMT-KMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSH 98 (141)
T ss_dssp SSSSCHHHHHHHHHHH-HHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999985 7999999 55898999999999888777776665
No 6
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=23.62 E-value=41 Score=28.70 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.4
Q ss_pred ccCCCCCCCCCChH
Q 020007 248 SFTSPGGPMYPTRA 261 (332)
Q Consensus 248 SfTsPGgP~Y~pR~ 261 (332)
.+|+|||++|++|.
T Consensus 65 ~l~~~ggn~y~~~~ 78 (162)
T 2j96_A 65 YTTQMQGPQYASTP 78 (162)
T ss_dssp GGTSSCSSSSCCSH
T ss_pred CccCCCCCCCccch
Confidence 35899999999988
No 7
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.10 E-value=62 Score=28.07 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=23.6
Q ss_pred hhhchHHHHhhhcCCCCCCCCcccCCCccch-HHHHHHHH
Q 020007 50 LEVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADH 88 (332)
Q Consensus 50 l~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fY~vLA~y 88 (332)
+.+|+.+..++...-.-+-.+..--.|+-+| |||++-.|
T Consensus 65 LgL~~e~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY 104 (156)
T 1dw9_A 65 LDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVY 104 (156)
T ss_dssp TTCCHHHHHHTTSBCCCCCCSSSSCCSHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHhcCCcCCCCCCCCCCCCeehhHHHHHHHh
Confidence 4677777665553333322222234477888 99999888
No 8
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=22.11 E-value=38 Score=28.94 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=15.2
Q ss_pred cCCCCCCCCCChHH-HHHHHHhh
Q 020007 249 FTSPGGPMYPTRAV-RHAAWDAL 270 (332)
Q Consensus 249 fTsPGgP~Y~pR~V-R~aA~~~L 270 (332)
+|+|||+.|+++.- ..|.+.=+
T Consensus 66 l~~~gG~~y~~~~~~~~~C~RD~ 88 (162)
T 3o18_A 66 TTTMQGSQYASTPEGKAKCARDI 88 (162)
T ss_dssp GGTSCSTTSSSSHHHHHHHHHHH
T ss_pred ccCCCCCCCcchhHHHHHHHHHH
Confidence 58999999999764 23444433
No 9
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=20.47 E-value=9.1 Score=37.36 Aligned_cols=17 Identities=35% Similarity=1.109 Sum_probs=15.2
Q ss_pred HHHHHhhcccCCcchhH
Q 020007 285 SLFFRLLYPWCWPSSCW 301 (332)
Q Consensus 285 slfFRLLhPyywp~S~w 301 (332)
+.|.|+-+||+||+.+|
T Consensus 100 ~~~Yrfq~py~wps~~w 116 (424)
T 2pbi_A 100 SSLYRFQTPYFWPTQQW 116 (424)
T ss_dssp SCEEEECCGGGSCCSSC
T ss_pred CeeEEeCCcccCcccCC
Confidence 46789999999999998
No 10
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=20.42 E-value=49 Score=28.13 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=15.4
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 020007 249 FTSPGGPMYPTRAVRHAAWDAL 270 (332)
Q Consensus 249 fTsPGgP~Y~pR~VR~aA~~~L 270 (332)
+++|||.+|++|. ..|.++=+
T Consensus 65 l~~pgg~~y~~~r-~~~ClRD~ 85 (161)
T 1kn1_B 65 ITRPGGNMYTTRR-YAACIRDL 85 (161)
T ss_dssp GGSTTSTTCSHHH-HHHHHHHH
T ss_pred ccCCCCCCccHHH-HHHHHHHH
Confidence 5899999999988 44444433
No 11
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=20.02 E-value=43 Score=26.26 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCCCCCCCCChHHHHHHHHhhhhhc
Q 020007 250 TSPGGPMYPTRAVRHAAWDALDFLF 274 (332)
Q Consensus 250 TsPGgP~Y~pR~VR~aA~~~LD~LF 274 (332)
|.|++|++|.+.-|+.-|.+-|-.|
T Consensus 13 tap~D~rFPn~nq~k~Cw~~y~df~ 37 (85)
T 1v54_H 13 TAPFDSRFPNQNQTRNCWQNYLDFH 37 (85)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHH
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHH
Confidence 8999999999999999998866543
Done!