Query 020007
Match_columns 332
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 10:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020007.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020007hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qzga1 a.29.14.1 (A:4-91) Unc 34.5 6.7 0.00049 29.6 1.4 43 236-278 4-46 (88)
2 d1lsha1 a.118.4.1 (A:285-620) 30.1 46 0.0034 28.4 6.4 53 236-292 202-254 (336)
3 d1pjqa3 e.37.1.1 (A:114-215) S 28.2 51 0.0037 23.9 5.5 34 14-47 39-72 (102)
4 d1cjxa2 d.32.1.3 (A:154-356) 4 26.1 19 0.0014 29.2 2.8 50 47-102 87-138 (203)
5 d2qsba1 a.29.14.1 (A:2-86) Unc 25.1 11 0.00079 28.3 1.0 39 240-278 6-44 (85)
6 d1cb8a1 a.102.3.2 (A:26-335) C 24.2 28 0.002 30.1 3.8 78 216-311 22-112 (310)
7 d1bjfa_ a.39.1.5 (A:) Neurocal 21.6 1.4E+02 0.01 21.6 7.3 73 18-90 3-87 (181)
8 d2c4ja1 a.45.1.1 (A:86-218) Cl 20.3 48 0.0035 24.0 4.0 61 191-261 60-128 (133)
9 d1jbob_ a.1.1.3 (B:) Phycocyan 19.8 22 0.0016 28.9 2.0 21 249-270 66-86 (172)
10 d1allb_ a.1.1.3 (B:) Allophyco 18.2 28 0.002 27.7 2.3 21 249-270 65-85 (161)
No 1
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=34.48 E-value=6.7 Score=29.63 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=32.1
Q ss_pred cchhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 020007 236 MTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 278 (332)
Q Consensus 236 ~tT~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr 278 (332)
+....|+|.|.+=+..=-.=.=+||-||++|-++.+.|-=.++
T Consensus 4 ~~~~e~i~~~~~~L~qI~~D~sVPRNIRr~a~~~~~~L~n~~~ 46 (88)
T d2qzga1 4 LSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQ 46 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTS
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHCCCc
Confidence 4556678888877766644455899999999999998865443
No 2
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=30.06 E-value=46 Score=28.40 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=40.3
Q ss_pred cchhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHhhc
Q 020007 236 MTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLY 292 (332)
Q Consensus 236 ~tT~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr~~Rh~VslfFRLLh 292 (332)
+.+--.|..|+-+..+++. -.|..||.+|..||..+ |. ..|+-+.+.+.++++
T Consensus 202 p~~i~~l~~~l~~~~~~~~--~~~~~vR~aAi~Alr~~-~~-~~p~~v~~~l~~i~~ 254 (336)
T d1lsha1 202 PNSIKKIQRFLPGQGKSLD--EYSTRVQAEAIMALRNI-AK-RDPRKVQEIVLPIFL 254 (336)
T ss_dssp GGGHHHHHTTSTTSSSCCC--CSCHHHHHHHHHTTTTG-GG-TCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhcccccccc--cccHHHHHHHHHHHHHh-hh-cCcHHHHHHHHHHHc
Confidence 4577889999988876654 26788999999999986 43 568877777776643
No 3
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=28.22 E-value=51 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.424 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 020007 14 AYLNALTQEIEKKLQRALASPSQRRNLLQELFAD 47 (332)
Q Consensus 14 ~~~~~L~~ei~kkL~~Al~s~~qr~~ll~eLFaD 47 (332)
.-+-.+..+...++...+.+..+|+.+++++|+|
T Consensus 39 ~~l~~~~~~~R~~vk~~~~~~~~Rr~fw~~~~~~ 72 (102)
T d1pjqa3 39 GQVARYAGQLRARVKKQFATMGERRRFWEKFFVN 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHcC
Confidence 4445556666777777788889999999999865
No 4
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}
Probab=26.12 E-value=19 Score=29.15 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred hhhhhhchHHHH--hhhcCCCCCCCCcccCCCccchHHHHHHHHhhhCCcchhhHHHH
Q 020007 47 DIALEVDDRARD--IILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDL 102 (332)
Q Consensus 47 Dial~vDdra~~--~i~~~~~d~Is~~~~~~~~~~cfY~vLA~yy~~vPe~~~~~l~L 102 (332)
=||+.+||=... .+.+. ++...+. ++-+||+.|+..+...++..+.+..+
T Consensus 87 HIAf~vdDI~aav~~L~~~---Gv~fL~~---pp~~Yy~~l~~~~~~~~~~~~~l~~~ 138 (203)
T d1cjxa2 87 HVAFLTDDLVKTWDALKKI---GMRFMTA---PPDTYYEMLEGRLPDHGEPVDQLQAR 138 (203)
T ss_dssp EEEEEESCHHHHHHHHHHT---TCCBCCC---CCHHHHHTHHHHSTTCCCCHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHhc---CCccccC---chhhHHHHHHHhhccccchHHHHHHc
Confidence 478888876432 33332 3333211 24599999998888888777776653
No 5
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=25.07 E-value=11 Score=28.31 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=27.0
Q ss_pred hhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 020007 240 TRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 278 (332)
Q Consensus 240 ~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr 278 (332)
.+||.|.+=+..=-.=.=+||-||++|-++.+.|-=.++
T Consensus 6 ~~l~~~~~~L~~I~~D~sVPRNIRr~a~e~~~~L~n~~~ 44 (85)
T d2qsba1 6 NLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENE 44 (85)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHCCCc
Confidence 345666665554433445799999999999999865444
No 6
>d1cb8a1 a.102.3.2 (A:26-335) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=24.23 E-value=28 Score=30.12 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhhhhcC-Cc-cc----------c-chhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHH
Q 020007 216 EPVLLHYLSQIKVLQG-ME-LR----------M-TTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRH 282 (332)
Q Consensus 216 E~vLlhYL~~~~~lkg-~e-L~----------~-tT~~RLqacLYSfTsPGgP~Y~pR~VR~aA~~~LD~LFP~Gr~~Rh 282 (332)
+....+||+.++- .| |+ |+ + +.-.||+.=-..++.||++-|.-..|+.+-.++||.++...
T Consensus 22 dk~~~~~l~~l~~-dg~w~DidY~d~~~~~~~~~~hl~rl~~mA~AY~~pgs~ly~d~~l~~~I~~al~~~~~~~----- 95 (310)
T d1cb8a1 22 DKVAEKNLNTLQP-DGSWKDVPYKDDAMTNWLPNNHLLQLETIIQAYIEKDSHYYGDDKVFDQISKAFKYWYDSD----- 95 (310)
T ss_dssp HHHHHHHHHHCCT-TSCCTTSCTTCCCSSSCTTHHHHHHHHHHHHHHHCTTSTTTTCHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHhCc-CCCCCCCCCcccccccCCHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHHHHHHHhCC-----
Confidence 5566688877753 22 21 21 1 11257877777778999999999999999999999875422
Q ss_pred HHHHHHHhhcccCCcchhHHHHHHHHHHH
Q 020007 283 VISLFFRLLYPWCWPSSCWNFIMSWLKAV 311 (332)
Q Consensus 283 ~VslfFRLLhPyywp~S~wn~i~~~ik~v 311 (332)
++.+.-|+|-|-+=+++
T Consensus 96 ------------~~~~NWW~~eIG~P~~l 112 (310)
T d1cb8a1 96 ------------PKSRNWWHNEIATPQAL 112 (310)
T ss_dssp ------------CCCSSHHHHHTHHHHHH
T ss_pred ------------CCCCCchHHhcccHHHH
Confidence 34577899988776554
No 7
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.59 E-value=1.4e+02 Score=21.61 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHhhh--hhhhchHHH-HhhhcCCCCCCC-C--------cccCCCccchHHHHH
Q 020007 18 ALTQEIEKKLQRALASPSQRRNLLQELFADI--ALEVDDRAR-DIILSGEEGGIC-P--------AEDGIDSRLCFYDVL 85 (332)
Q Consensus 18 ~L~~ei~kkL~~Al~s~~qr~~ll~eLFaDi--al~vDdra~-~~i~~~~~d~Is-~--------~~~~~~~~~cfY~vL 85 (332)
+|+.|+.++|.+......+.-+-+.+.|.|. ...++...- +.+........+ + .+...+|.+.|.|.+
T Consensus 3 ~l~~~~~~~L~~~t~fs~~ei~~l~~~F~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eFl 82 (181)
T d1bjfa_ 3 KLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFI 82 (181)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHH
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCcEeHHHHH
Confidence 4678899999999987766677777777665 444554432 333322222111 1 167777888888877
Q ss_pred HHHhh
Q 020007 86 ADHYV 90 (332)
Q Consensus 86 A~yy~ 90 (332)
+--..
T Consensus 83 ~~~~~ 87 (181)
T d1bjfa_ 83 IALSV 87 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 8
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.34 E-value=48 Score=24.05 Aligned_cols=61 Identities=20% Similarity=0.386 Sum_probs=39.9
Q ss_pred CcccccC---CcchhHHHHHHHhhhhcch-----hHHHHHHHHhhhhcCCccccchhhhHhhhhhccCCCCCCCCCChH
Q 020007 191 NAFLVGG---SADFFVIEVADQLQKLKVE-----PVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRA 261 (332)
Q Consensus 191 n~~lvgg---~aD~FV~ev~dqL~~iK~E-----~vLlhYL~~~~~lkg~eL~~tT~~RLqacLYSfTsPGgP~Y~pR~ 261 (332)
|.+++|. -+|+.+-++++.+..+..+ |-|..|.+++.-.- .+|+.|-|=-....|.+++.+
T Consensus 60 ~~~l~G~~~T~aD~~~~~~l~~~~~~~~~~l~~~P~L~~~~~rv~~~P----------~ik~yl~s~~~~~~p~~~~~a 128 (133)
T d2c4ja1 60 QPWFLGDKITFVDFIAYDVLERNQVFEPSCLDAFPNLKDFISRFEGLE----------KISAYMKSSRFLPRPVFSKMA 128 (133)
T ss_dssp CSBTTBSSCCHHHHHHHHHHHHHHHHSTTTTTTCHHHHHHHHHHHHSH----------HHHHHHHSTTCCCCCSSCTTC
T ss_pred CCeeecCCccHHHHHHHHHHHHHHHhCchhhhhCchHHHHHHHHHhCH----------HHHHHHhCcccCCCCCCCccc
Confidence 3467775 5999999999998776432 56677777765443 366666554444566666654
No 9
>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=19.79 E-value=22 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=14.7
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 020007 249 FTSPGGPMYPTRAVRHAAWDAL 270 (332)
Q Consensus 249 fTsPGgP~Y~pR~VR~aA~~~L 270 (332)
+|+|||+.|+||.-- |.|+=+
T Consensus 66 l~~~GG~~y~~~r~~-aC~RD~ 86 (172)
T d1jbob_ 66 LIQPGGNAYTNRRMA-ACLRDM 86 (172)
T ss_dssp GTSTTSTTCSHHHHH-HHHHHH
T ss_pred ccCCCCCCchHHHHH-HHHHHH
Confidence 689999999987432 444433
No 10
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=18.20 E-value=28 Score=27.75 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=15.1
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 020007 249 FTSPGGPMYPTRAVRHAAWDAL 270 (332)
Q Consensus 249 fTsPGgP~Y~pR~VR~aA~~~L 270 (332)
+|.|||..|++|.- .|.|+=+
T Consensus 65 ~~~pgG~~y~~~r~-~aC~RD~ 85 (161)
T d1allb_ 65 VTRPGGNMYTTRRY-AACIRDL 85 (161)
T ss_dssp TTSTTSTTCSHHHH-HHHHHHH
T ss_pred ccCCCCCCCChHHH-HHHHHHH
Confidence 79999999998863 4444434
Done!