Query 020008
Match_columns 332
No_of_seqs 281 out of 1741
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul1_X Flap endonuclease-1; pr 100.0 3.2E-74 1.1E-78 560.3 19.9 326 2-331 52-378 (379)
2 3q8k_A Flap endonuclease 1; he 100.0 2.9E-72 9.8E-77 538.9 30.0 290 2-295 52-341 (341)
3 3ory_A Flap endonuclease 1; hy 100.0 2.2E-72 7.7E-77 543.2 22.4 288 2-296 61-361 (363)
4 2izo_A FEN1, flap structure-sp 100.0 3.4E-68 1.2E-72 512.4 20.4 289 2-294 44-346 (346)
5 1b43_A Protein (FEN-1); nuclea 100.0 2.3E-66 7.9E-71 498.7 22.3 283 2-295 47-339 (340)
6 1rxw_A Flap structure-specific 100.0 8.8E-65 3E-69 487.0 25.5 280 2-294 47-336 (336)
7 1a76_A Flap endonuclease-1 pro 100.0 9.6E-66 3.3E-70 491.8 17.3 277 2-295 47-326 (326)
8 3qe9_Y Exonuclease 1; exonucle 100.0 6.2E-53 2.1E-57 406.1 18.1 233 5-241 47-291 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 5.5E-44 1.9E-48 334.2 9.6 224 4-260 36-281 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 8.7E-46 3E-50 390.0 -10.7 233 2-267 33-279 (832)
11 3h7i_A Ribonuclease H, RNAse H 99.9 4.3E-28 1.5E-32 225.7 8.5 163 2-193 32-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 97.9 7.5E-05 2.6E-09 80.8 13.8 178 15-193 63-299 (1140)
13 3pie_A 5'->3' exoribonuclease 97.8 7.9E-05 2.7E-09 80.0 11.1 178 14-192 62-301 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 97.6 0.00022 7.6E-09 74.5 10.7 178 14-192 83-349 (899)
15 2a1j_A DNA repair endonuclease 96.7 0.00086 2.9E-08 47.9 2.5 26 185-210 7-32 (63)
16 1z00_B DNA repair endonuclease 96.2 0.0027 9.2E-08 48.0 3.2 26 185-210 21-46 (84)
17 1z00_A DNA excision repair pro 94.9 0.02 6.7E-07 43.3 3.6 27 185-211 22-48 (89)
18 1x2i_A HEF helicase/nuclease; 94.9 0.021 7.2E-07 41.2 3.6 26 186-211 18-43 (75)
19 1kft_A UVRC, excinuclease ABC 94.9 0.01 3.6E-07 43.7 1.9 27 185-211 27-53 (78)
20 2a1j_B DNA excision repair pro 94.4 0.029 9.8E-07 42.6 3.5 25 186-210 36-60 (91)
21 2nrt_A Uvrabc system protein C 94.0 0.03 1E-06 49.7 3.2 26 185-210 171-196 (220)
22 3c65_A Uvrabc system protein C 91.0 0.042 1.4E-06 49.0 0.0 28 184-211 175-202 (226)
23 2bgw_A XPF endonuclease; hydro 88.7 0.19 6.7E-06 44.0 2.5 25 186-210 166-190 (219)
24 1ixr_A Holliday junction DNA h 87.6 0.25 8.7E-06 42.8 2.4 88 186-278 76-170 (191)
25 4gfj_A Topoisomerase V; helix- 85.9 0.48 1.6E-05 45.8 3.4 25 186-210 472-496 (685)
26 1cuk_A RUVA protein; DNA repai 84.6 0.43 1.5E-05 41.7 2.4 18 187-204 78-95 (203)
27 2ztd_A Holliday junction ATP-d 82.0 0.69 2.4E-05 40.7 2.6 42 162-209 73-114 (212)
28 1s5l_U Photosystem II 12 kDa e 75.6 0.67 2.3E-05 37.7 0.5 24 186-209 67-92 (134)
29 1vq8_Y 50S ribosomal protein L 73.2 0.7 2.4E-05 41.4 0.0 25 185-209 18-43 (241)
30 2ziu_A MUS81 protein; helix-ha 70.5 3.2 0.00011 38.2 3.8 29 186-214 241-269 (311)
31 3sgi_A DNA ligase; HET: DNA AM 67.8 1.1 3.7E-05 45.5 0.0 27 185-211 532-558 (615)
32 2w9m_A Polymerase X; SAXS, DNA 67.7 6.6 0.00023 39.4 5.7 27 186-212 101-128 (578)
33 2owo_A DNA ligase; protein-DNA 67.3 3 0.0001 42.8 3.1 26 185-210 515-540 (671)
34 2duy_A Competence protein come 65.5 2.9 0.0001 29.9 2.0 17 186-202 31-47 (75)
35 2bcq_A DNA polymerase lambda; 65.3 3.9 0.00013 38.3 3.3 26 186-211 100-126 (335)
36 3c1y_A DNA integrity scanning 63.8 3.3 0.00011 39.5 2.5 25 187-211 320-344 (377)
37 3maj_A DNA processing chain A; 63.2 10 0.00035 36.2 5.8 41 167-213 17-57 (382)
38 2fmp_A DNA polymerase beta; nu 61.9 3.9 0.00013 38.3 2.6 25 186-210 102-127 (335)
39 1jms_A Terminal deoxynucleotid 61.8 4.6 0.00016 38.5 3.1 25 186-210 125-150 (381)
40 3b0x_A DNA polymerase beta fam 60.9 5.4 0.00018 40.0 3.6 28 186-213 97-126 (575)
41 2i5h_A Hypothetical protein AF 59.7 6.9 0.00024 34.0 3.5 46 167-212 112-167 (205)
42 2ihm_A POL MU, DNA polymerase 59.6 5 0.00017 37.9 2.9 24 186-209 106-130 (360)
43 1dgs_A DNA ligase; AMP complex 59.1 4.5 0.00015 41.5 2.6 25 185-209 510-534 (667)
44 3arc_U Photosystem II 12 kDa e 59.1 2.4 8.1E-05 32.5 0.5 23 186-208 30-54 (97)
45 4glx_A DNA ligase; inhibitor, 53.8 8.5 0.00029 38.8 3.6 14 89-102 241-254 (586)
46 2ztd_A Holliday junction ATP-d 47.3 9.4 0.00032 33.4 2.4 26 177-203 117-144 (212)
47 3vdp_A Recombination protein R 46.5 8.2 0.00028 33.7 1.9 15 186-200 30-44 (212)
48 2g3q_A Protein YBL047C; endocy 44.8 15 0.00052 23.1 2.6 26 250-277 2-27 (43)
49 1rvv_A Riboflavin synthase; tr 43.3 30 0.001 28.6 4.8 44 82-125 26-76 (154)
50 1hqk_A 6,7-dimethyl-8-ribityll 41.6 31 0.0011 28.5 4.6 44 82-125 26-76 (154)
51 1vdd_A Recombination protein R 40.9 11 0.00039 33.2 1.9 15 186-200 16-30 (228)
52 3nq4_A 6,7-dimethyl-8-ribityll 40.9 24 0.00082 29.3 3.8 44 82-125 26-77 (156)
53 2edu_A Kinesin-like protein KI 40.6 14 0.00047 27.8 2.2 17 186-202 44-60 (98)
54 1di0_A Lumazine synthase; tran 39.0 20 0.00069 29.7 3.1 44 82-125 24-74 (158)
55 1kz1_A 6,7-dimethyl-8-ribityll 38.8 35 0.0012 28.4 4.5 43 83-125 32-82 (159)
56 1ixr_A Holliday junction DNA h 38.5 16 0.00054 31.3 2.4 19 185-203 110-128 (191)
57 4glx_A DNA ligase; inhibitor, 38.0 21 0.0007 36.0 3.5 26 185-210 515-540 (586)
58 3b0x_A DNA polymerase beta fam 37.9 32 0.0011 34.3 4.9 40 159-201 107-147 (575)
59 2zvk_U DNA polymerase ETA, pro 37.6 5.2 0.00018 22.7 -0.5 14 284-298 7-20 (26)
60 3umv_A Deoxyribodipyrimidine p 37.4 54 0.0018 32.2 6.4 31 87-118 97-127 (506)
61 2ekk_A UBA domain from E3 ubiq 37.4 30 0.001 22.2 3.1 26 250-277 7-32 (47)
62 1c2y_A Protein (lumazine synth 37.3 35 0.0012 28.2 4.3 44 82-125 27-76 (156)
63 2dak_A Ubiquitin carboxyl-term 36.7 41 0.0014 23.1 4.0 26 250-277 7-32 (63)
64 2qip_A Protein of unknown func 36.7 63 0.0022 26.3 5.9 49 87-135 63-125 (165)
65 2obx_A DMRL synthase 1, 6,7-di 36.3 22 0.00075 29.5 2.9 44 82-125 25-75 (157)
66 4fp9_B Mterf domain-containing 34.4 1.8E+02 0.0062 26.8 9.2 102 163-276 54-171 (335)
67 2zix_A Crossover junction endo 34.3 4.2 0.00014 37.4 -2.1 29 186-214 237-265 (307)
68 1cuk_A RUVA protein; DNA repai 32.9 20 0.00068 31.0 2.2 17 186-202 112-128 (203)
69 3fhg_A Mjogg, N-glycosylase/DN 32.7 20 0.00069 30.8 2.2 16 186-201 121-136 (207)
70 2dag_A Ubiquitin carboxyl-term 32.3 46 0.0016 23.8 3.7 27 250-278 7-33 (74)
71 1whz_A Hypothetical protein; a 31.7 82 0.0028 21.7 5.0 66 105-174 4-69 (70)
72 1ejb_A Lumazine synthase; anal 31.4 62 0.0021 27.0 4.9 44 82-125 30-85 (168)
73 1wji_A Tudor domain containing 30.8 56 0.0019 22.6 3.9 26 250-277 7-32 (63)
74 3r8n_M 30S ribosomal protein S 30.6 37 0.0013 26.6 3.2 17 187-203 21-37 (114)
75 3tvs_A Cryptochrome-1; circadi 30.1 64 0.0022 31.9 5.6 32 87-118 63-97 (538)
76 3fhf_A Mjogg, N-glycosylase/DN 30.1 25 0.00087 30.5 2.4 17 186-202 129-145 (214)
77 1pu6_A 3-methyladenine DNA gly 29.2 23 0.0008 30.7 2.0 16 186-201 125-140 (218)
78 3n0u_A Probable N-glycosylase/ 29.2 22 0.00076 31.0 1.9 18 186-203 134-151 (219)
79 1z96_A DNA-damage, UBA-domain 28.7 77 0.0026 19.1 3.9 26 251-277 2-27 (40)
80 1wiv_A UBP14, ubiquitin-specif 27.7 62 0.0021 23.0 3.7 27 249-277 26-52 (73)
81 2csb_A Topoisomerase V, TOP61; 27.5 39 0.0013 30.6 3.2 104 157-267 352-492 (519)
82 1veg_A NEDD8 ultimate buster-1 27.3 64 0.0022 23.7 3.8 27 249-277 26-52 (83)
83 2crn_A Ubash3A protein; compac 27.2 30 0.001 24.0 1.9 28 249-278 6-33 (64)
84 1kea_A Possible G-T mismatches 26.9 27 0.00093 30.2 2.0 15 187-201 120-134 (221)
85 2k6x_A Sigma-A, RNA polymerase 26.8 97 0.0033 21.7 4.7 36 69-104 26-62 (72)
86 2ziu_B Crossover junction endo 26.8 51 0.0017 30.6 4.0 29 186-214 259-287 (341)
87 3iz6_M 40S ribosomal protein S 26.5 10 0.00036 31.3 -0.7 17 187-203 33-49 (152)
88 1kg2_A A/G-specific adenine gl 26.3 28 0.00096 30.2 2.0 14 187-200 114-127 (225)
89 2h56_A DNA-3-methyladenine gly 26.3 28 0.00097 30.5 2.0 15 186-200 142-156 (233)
90 3v32_B Ribonuclease ZC3H12A; r 26.2 2.3E+02 0.0079 23.9 7.7 35 94-129 91-134 (185)
91 2otd_A Glycerophosphodiester p 26.1 72 0.0025 27.6 4.7 43 89-132 198-240 (247)
92 1ify_A HHR23A, UV excision rep 25.6 38 0.0013 22.1 2.1 25 251-277 7-31 (49)
93 1orn_A Endonuclease III; DNA r 23.7 34 0.0012 29.8 2.0 14 187-200 118-131 (226)
94 2i0f_A 6,7-dimethyl-8-ribityll 23.7 69 0.0024 26.4 3.8 44 82-125 26-78 (157)
95 3p87_G Ribonuclease H2 subunit 23.5 20 0.00068 19.9 0.3 13 285-297 3-15 (23)
96 1whc_A RSGI RUH-027, UBA/UBX 3 23.5 45 0.0015 23.1 2.2 27 250-278 7-33 (64)
97 2abk_A Endonuclease III; DNA-r 23.5 33 0.0011 29.4 1.9 14 187-200 114-127 (211)
98 2dai_A Ubadc1, ubiquitin assoc 23.3 87 0.003 22.9 3.9 26 250-277 27-52 (83)
99 3mk7_B Cytochrome C oxidase, C 23.0 41 0.0014 29.1 2.3 33 88-120 154-197 (203)
100 3m66_A Mterf3, mterf domain-co 22.9 1.1E+02 0.0038 26.8 5.4 107 161-278 47-172 (270)
101 1vg5_A RSGI RUH-014, rhomboid 22.9 1E+02 0.0035 22.0 4.1 27 249-277 26-52 (73)
102 1vek_A UBP14, ubiquitin-specif 22.7 88 0.003 22.9 3.8 26 250-277 27-52 (84)
103 3s6i_A DNA-3-methyladenine gly 22.4 37 0.0013 29.6 2.0 15 186-200 143-157 (228)
104 3i0w_A 8-oxoguanine-DNA-glycos 21.8 38 0.0013 30.7 2.0 15 186-200 215-229 (290)
105 2yg9_A DNA-3-methyladenine gly 21.6 39 0.0013 29.4 2.0 15 186-200 150-164 (225)
106 4ae4_A Ubiquitin-associated pr 21.6 2.5E+02 0.0086 21.7 6.6 24 252-277 76-99 (118)
107 2cpw_A CBL-interacting protein 21.5 49 0.0017 22.9 2.1 25 251-277 18-42 (64)
108 1vd6_A Glycerophosphoryl diest 21.3 74 0.0025 27.1 3.7 44 88-132 176-219 (224)
109 3ch0_A Glycerophosphodiester p 21.2 84 0.0029 27.5 4.2 43 89-132 227-269 (272)
110 4b21_A Probable DNA-3-methylad 20.9 42 0.0014 29.4 2.0 15 186-200 154-168 (232)
111 2xw6_A MGS, methylglyoxal synt 20.9 1.2E+02 0.004 24.3 4.5 35 91-125 41-79 (134)
112 3u5c_S 40S ribosomal protein S 20.8 55 0.0019 26.7 2.6 17 187-203 35-51 (146)
113 1mpg_A ALKA, 3-methyladenine D 20.1 43 0.0015 30.0 2.0 15 186-200 211-225 (282)
114 2jhn_A ALKA, 3-methyladenine D 20.1 43 0.0015 30.3 2.0 37 162-200 175-228 (295)
No 1
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=3.2e-74 Score=560.34 Aligned_cols=326 Identities=53% Similarity=0.949 Sum_probs=249.9
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|++|++|+|++||++++++|+++||+|+|||||.+|++|++++++||++|.++++.++.+++.|+.+++.+|++++++
T Consensus 52 l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (379)
T 1ul1_X 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (379)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC-----------------------------CCC
T ss_pred cCcCCCCCchHHHHHHHHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCCccEEEeHHHH
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~~~~~~~~~~v 161 (332)
||..|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+||||+++|++++...+.++.++.+|+.+.+
T Consensus 132 vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v 211 (379)
T 1ul1_X 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (379)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877543333456889999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHHhCCCCcCCcc
Q 020008 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (332)
Q Consensus 162 ~~~~gl~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~f~~p~V~~~~ 241 (332)
++.+|++++||+|+|+|+||||+|||||||+|||++||++||++|+|+++++..+..+|++|++.+++.+|++|+|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~k~~~~~~~~~~~ar~l~l~~~v~~~~ 291 (379)
T 1ul1_X 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (379)
T ss_dssp HHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCTTSCCCSSCCHHHHHHHHHSCCCCCGG
T ss_pred HHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhhcccCCCcCCHHHHHHHhcCCeeCCCC
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999877
Q ss_pred chhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCCccccccCcccCCCCccccCCCCCCccccccccc
Q 020008 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKS 321 (332)
Q Consensus 242 ~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (332)
++ ++.|..||.++|++||+++++|+++||++.++||.++....+|+|||+||++.++.. +.+++.... +...++++
T Consensus 292 ~~-~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~~~~~~q~~l~~ff~~~~~~~-~~~~~~~~~--~~~~~~~~ 367 (379)
T 1ul1_X 292 SV-ELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKEPEP--KGSTKKKA 367 (379)
T ss_dssp GC-CCCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHSCCSBCCHHHHSEEEEEEE-CCCCCC-------------
T ss_pred Cc-cCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcHHhhcCCCCCCc-ccccccccc--cccccccc
Confidence 77 899999999999999889999999999999999998888889999999998755322 234443222 22333444
Q ss_pred cCCC-CCCCCC
Q 020008 322 KAGG-GGGRKR 331 (332)
Q Consensus 322 ~~~~-~~~~~~ 331 (332)
+.++ ++++++
T Consensus 368 ~~~~~~~~~~~ 378 (379)
T 1ul1_X 368 KTGAAGKFKRG 378 (379)
T ss_dssp -----------
T ss_pred ccCCcccccCC
Confidence 4444 444444
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=2.9e-72 Score=538.89 Aligned_cols=290 Identities=53% Similarity=0.977 Sum_probs=275.9
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|++|++|+|++||++++++|++++|+|+|||||.+|++|++++++||++|+++.+.+.++++.|+.+++.+|++|+++
T Consensus 52 l~~~~G~~T~al~g~~~~~~~ll~~~i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~ 131 (341)
T 3q8k_A 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (341)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTTTCEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCC
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHCCCCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhccc
Confidence 78999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCCccEEEeHHHH
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~~~~~~~~~~v 161 (332)
||++|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|||+++.|++++..+..++.++..|+.+.+
T Consensus 132 vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 211 (341)
T 3q8k_A 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (341)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887544334456789999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHHhCCCCcCCcc
Q 020008 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (332)
Q Consensus 162 ~~~~gl~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~f~~p~V~~~~ 241 (332)
++.+|++|+||+|+|+|+||||+|||||||||||++||++|||+|+|+++++..+.++|++|++.+++.+|++|+|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~ 291 (341)
T 3q8k_A 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (341)
T ss_dssp HHHHTCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTT
T ss_pred HHHhCCCHHHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999998765
Q ss_pred chhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCCccccccC
Q 020008 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (332)
Q Consensus 242 ~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff~ 295 (332)
+ .+|.|..||.++|++||+++++|+++||++.++||.++.+ |++||+||.
T Consensus 292 ~-~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 292 S-VELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp T-SCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred c-cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCcHhhhcC
Confidence 5 4899999999999999999999999999999999998875 999999994
No 3
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=2.2e-72 Score=543.23 Aligned_cols=288 Identities=39% Similarity=0.674 Sum_probs=256.7
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|++|.+|+|++|||+|+++|+++||+|+|||||.+|++|++++++||++|+++++++..+++.|+.+++.++++++++
T Consensus 61 l~~~~G~~T~al~gf~~r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~ 140 (363)
T 3ory_A 61 LMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAK 140 (363)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCC
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCC---------c
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~---------~ 152 (332)
||++|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+||||+++|+++++..+.++. .
T Consensus 141 vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~ 220 (363)
T 3ory_A 141 LTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVK 220 (363)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988764321100 2
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 020008 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (332)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~-~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~ 231 (332)
...|+.+.+++.+|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++++. ..+| |++.+++++
T Consensus 221 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--~~~~--~~~~~~~~~ 296 (363)
T 3ory_A 221 PELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--SPIE--VDVIAIKKY 296 (363)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--CSSC--CCHHHHHHH
T ss_pred eEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--ccCC--CCHHHHHHH
Confidence 368999999999999999999999999999999 99999999999999999999999999874 2343 678999999
Q ss_pred hCCCCcCCccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc---cCCCCccccccCc
Q 020008 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKP 296 (332)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~Q~~l~~ff~~ 296 (332)
|++|.|+. +. +|+|+.||.++|++||+++++|+++||++.++||.++.+ +.+|+|||+||+.
T Consensus 297 f~~p~v~~--~~-~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~~~~q~~l~~~f~~ 361 (363)
T 3ory_A 297 FLQPQVTD--NY-RIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFSK 361 (363)
T ss_dssp HHSCCCCS--CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred hcCCCCCC--CC-CCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcccccCcCCCHHHhcCC
Confidence 99999995 44 699999999999999999999999999999999988765 4799999999973
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-68 Score=512.43 Aligned_cols=289 Identities=39% Similarity=0.663 Sum_probs=208.0
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|++|.+|+|++||++++++|+++||+|+|||||.+|++|++++++||++|.++++++..+++.|+.+++.+|+++++.
T Consensus 44 l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 123 (346)
T 2izo_A 44 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILR 123 (346)
T ss_dssp CBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC---------------------------------------------
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCC---------c
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~---------~ 152 (332)
+|+.|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+||||+++|++++...+.++. .
T Consensus 124 vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~ 203 (346)
T 2izo_A 124 LSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIK 203 (346)
T ss_dssp -CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987754332211 3
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 020008 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (332)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~-~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~ 231 (332)
+..|+.+.+++.+|++++||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++++.. ++|++|++.+++.+
T Consensus 204 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~--k~~~~~~~~~l~~i 281 (346)
T 2izo_A 204 PELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEIS--KKDINFNIDEIRGL 281 (346)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC-------------------CTTHHHH
T ss_pred eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhc--cCCCCccHHHHHHH
Confidence 567999999999999999999999999999999 999999999999999999999999999876 48999988899999
Q ss_pred hCCCCcCCccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc----CCCCcccccc
Q 020008 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294 (332)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~----~~Q~~l~~ff 294 (332)
|.+|.|+.+ ..++.|..||.++|.+||+++++|+++||.++++||.++.+. ++|+|||+||
T Consensus 282 ~~~~~v~~~--~~~l~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~~~~~~~~q~~l~~ff 346 (346)
T 2izo_A 282 FLNPQVVKP--EEALDLNEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346 (346)
T ss_dssp HHSCCCCCC--C-CCCCCCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTBCCGGGCC
T ss_pred hhCCCCCCc--cccCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcccCCCCCcchhhcC
Confidence 999999854 347999999999999999899999999999999999887653 6899999999
No 5
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=2.3e-66 Score=498.70 Aligned_cols=283 Identities=42% Similarity=0.746 Sum_probs=263.4
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|+.|.+|+|++||++++++|++++++|+|||||.+|++|++++++|+.+|+++.+.+.++++.|+.+.+.+++++++.
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~ 126 (340)
T 1b43_A 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATR 126 (340)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGG
T ss_pred cccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCC---------c
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~---------~ 152 (332)
+|+.|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++...+.++. .
T Consensus 127 vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~ 206 (340)
T 1b43_A 127 VNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIK 206 (340)
T ss_dssp GTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987754322111 2
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 020008 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (332)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~-~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~ 231 (332)
+..|+.+.+++.+|++++||+|+|+|+||||++ ||||||+|||++||++||++++|+++ |++|++.+++.+
T Consensus 207 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~--------~~~~~~~~~~~~ 278 (340)
T 1b43_A 207 PELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK--------QSDVDLYAIKEF 278 (340)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG--------GCSSCHHHHHHH
T ss_pred eeEEEHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC--------CCCccHHHHHHH
Confidence 467999999999999999999999999999999 99999999999999999999999987 466777789999
Q ss_pred hCCCCcCCccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCCccccccC
Q 020008 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (332)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff~ 295 (332)
|++|.|++ ..++.|..||.++|.+||+++++|+++||++.++|+.+..++.+|+|||+||+
T Consensus 279 ~~~~~v~d---~~~~~~~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~q~~l~~~f~ 339 (340)
T 1b43_A 279 FLNPPVTD---NYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339 (340)
T ss_dssp HHSCCCCC---CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHTTGGGCCSSCC
T ss_pred HhCCCCCC---cccCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCCHHHhhC
Confidence 99998885 34799999999999999989999999999999999998887789999999996
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=8.8e-65 Score=487.00 Aligned_cols=280 Identities=39% Similarity=0.666 Sum_probs=246.0
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|++|.+|+|++||++++++|++++|+|+|||||.+|++|++++++||++|.++++.+..+++.|+ +++.+++++++.
T Consensus 47 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~ 125 (336)
T 1rxw_A 47 LKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGR 125 (336)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCC
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCEEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhcc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999 888999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCC---------Cc
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK---------IP 152 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~---------~~ 152 (332)
||+.|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|++||++++|++++...+.++ ..
T Consensus 126 vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~ 205 (336)
T 1rxw_A 126 VDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVK 205 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998876543210 13
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCc-hHHHHHH
Q 020008 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRL 231 (332)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~-~~~~~~~ 231 (332)
+..|+.+.+++.+|++|+||+|+|+|+||||++||||||+|||++||++|||+|+|+++++ ++|+ ..+.+.+
T Consensus 206 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~-------~~l~~~~~l~~i 278 (336)
T 1rxw_A 206 PEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK-------VNIDHVEEIRNF 278 (336)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT-------C----CHHHHHH
T ss_pred eEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC-------CCCccHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999986 3333 4588899
Q ss_pred hCCCCcCCccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCCcccccc
Q 020008 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294 (332)
Q Consensus 232 f~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~Q~~l~~ff 294 (332)
|.+|.|+. .+++.|..||.++|.+||+++++|+++||.+.++||.++.. +|+|||+||
T Consensus 279 ~~~~~v~~---~~~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~--~q~~l~~~f 336 (336)
T 1rxw_A 279 FLNPPVTD---DYRIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336 (336)
T ss_dssp HHSCCCCC---CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC--------------
T ss_pred HhCCCCCC---cccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhhhc--cCcchhhcC
Confidence 99999982 34799999999999999989999999999999999987654 799999998
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=9.6e-66 Score=491.78 Aligned_cols=277 Identities=40% Similarity=0.714 Sum_probs=249.3
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhc
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~ 81 (332)
|+|++|.+|+|++||++++++|+.++|+|+|||||.+|++|++++++||++|+++++++..+++.|+.+++.+|++++++
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 126 (326)
T 1a76_A 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSY 126 (326)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCS
T ss_pred cccccCCccHHHHHHHHHHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 78999999999999999999998899999999999999999999999999999999998878888888899999999999
Q ss_pred cCHHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCCccEEEeHHHH
Q 020008 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~~~~~~~~~~v 161 (332)
+|+.|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+||||+++|++++...+ ..++.|+.+.+
T Consensus 127 vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~---~~~~~~~~~~v 203 (326)
T 1a76_A 127 LTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK---EMPELIELNEV 203 (326)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS---SCCEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC---CceEEEEHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988775432 25789999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHH-HHHHhhcCCCCCCCchHHHHHHhCCCCcCC
Q 020008 162 LEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETIL-ENINRERYQIPEDWPYQEARRLFKEPEVVT 239 (332)
Q Consensus 162 ~~~~gl~~~q~id~~~L~G~Dy~~-~ipgiG~ktA~~li~~~~sle~il-~~~~~~~~~~~~~~~~~~~~~~f~~p~V~~ 239 (332)
++.+|++|+||+|+|+|+||||++ ||||||||||++||++ |++++|+ ++++. +.+++.+|++|.|..
T Consensus 204 ~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~----------~~~~~~~~l~~~l~~ 272 (326)
T 1a76_A 204 LEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY----------YDEIKRIFKEPKVTD 272 (326)
T ss_dssp HHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT----------HHHHHHHHHSCCCCC
T ss_pred HHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH----------HHHHHHHHhCCCCCC
Confidence 999999999999999999999999 9999999999999999 9999999 99752 357889999999985
Q ss_pred ccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc-CCCCccccccC
Q 020008 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-SSQGRLESFFK 295 (332)
Q Consensus 240 ~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~-~~Q~~l~~ff~ 295 (332)
++ ++.|..||.++|++||+++++|+++||++.++|+.+..+. .+|+|||+||+
T Consensus 273 --~~-~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~~q~~l~~~f~ 326 (326)
T 1a76_A 273 --NY-SLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326 (326)
T ss_dssp --CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --Cc-cCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCcCchhhhcC
Confidence 55 8999999999999998799999999999999999887764 78999999995
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=6.2e-53 Score=406.14 Aligned_cols=233 Identities=29% Similarity=0.450 Sum_probs=212.9
Q ss_pred CCCCchhHHHHHHHHHHHHH-HcCCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhhccC
Q 020008 5 EAGEVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 83 (332)
Q Consensus 5 ~~G~~t~~l~g~~~r~~~ll-~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~~vt 83 (332)
+.|++|+|+.|+|+|+++++ ++||+|||||||.+++.|.++..+|+.+|+++.+..++++++|+.+++.+++++++.+|
T Consensus 47 ~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt 126 (352)
T 3qe9_Y 47 AKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINIT 126 (352)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCC
Confidence 58999999999999999975 79999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCCccEEEeHHHH--
Q 020008 84 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-- 161 (332)
Q Consensus 84 ~~~~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~~~~~~~~~~v-- 161 (332)
++|++.++++|++|||||++||+|||||||+|+++|++++|+|+|+|+||||+++|++++...+. ...++.+.+
T Consensus 127 ~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~----~~~~~~~~~~~ 202 (352)
T 3qe9_Y 127 HAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGN----GLEIDQARLGM 202 (352)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTSE----EEEEEGGGGTT
T ss_pred HHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCCC----cEEEeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877654321 245777765
Q ss_pred HHHcC--CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHc--CCHHHHHHHHHhh---cCCCCCCCc--hHHHHHHh
Q 020008 162 LEELN--LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH--GSIETILENINRE---RYQIPEDWP--YQEARRLF 232 (332)
Q Consensus 162 ~~~~g--l~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~~--~sle~il~~~~~~---~~~~~~~~~--~~~~~~~f 232 (332)
++++| ++++||+|+|+|+||||++||||||+|||++||++| ++++++++++++. ++.+|++|. +.+|+.+|
T Consensus 203 ~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F 282 (352)
T 3qe9_Y 203 CRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTF 282 (352)
T ss_dssp CCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 68889 999999999999999999999999999999999999 7999999998753 568999998 67899999
Q ss_pred CCCCcCCcc
Q 020008 233 KEPEVVTDE 241 (332)
Q Consensus 233 ~~p~V~~~~ 241 (332)
.++.|.++.
T Consensus 283 ~~q~V~dp~ 291 (352)
T 3qe9_Y 283 LYQLVFDPI 291 (352)
T ss_dssp HHCEEEETT
T ss_pred CCCEEECCC
Confidence 999988664
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=5.5e-44 Score=334.19 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=182.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcCCCc---EEEEeCCCCchhhhhHHHHhhchhhch-------HHHHHHHHcCCHHHHH
Q 020008 4 NEAGEVTSHLQGMFTRTIRLLEAGMKP---IYVFDGQPPDLKKQELAKRYSKRADAT-------DDLAEAVEAGNKEDIE 73 (332)
Q Consensus 4 ~~~G~~t~~l~g~~~r~~~ll~~gi~P---v~VFDG~~~~~K~~~~~~rk~~R~~~~-------~~l~~~~~~g~~~~~~ 73 (332)
|++|.| |++||++++.++++. ++| ++||||.+++||++++++||++|.++| +++
T Consensus 36 ~~~G~p--av~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L------------- 99 (290)
T 1exn_A 36 NNSKKP--FASSYVSTIQSLAKS-YSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKAL------------- 99 (290)
T ss_dssp HCSSSC--CHHHHHHHHHHHHHH-TTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHH-------------
T ss_pred CCCCch--HHHHHHHHHHHHHHH-cCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhH-------------
Confidence 688999 999999999999986 778 789999999999999999999999999 555
Q ss_pred HHhhhhhccCHHH-HHHHHHHHHH--cCCCEEeccc-chHHHHHHHHHc----CCeEEEecCCCccccccCCceEEEeec
Q 020008 74 KFSKRTVKVTKQH-NDDCKRLLKL--MGVPVVEAPS-EAEAQCAALCKS----GQVYAVASEDMDSLTFGAPRFLRHLMD 145 (332)
Q Consensus 74 k~~~r~~~vt~~~-~~~~~~lL~~--~Gi~~i~ap~-EADaq~A~L~~~----g~v~~V~S~DsD~l~fg~~~vi~~l~~ 145 (332)
..| ++.++++|++ ||||++.+|| ||||+||+|+++ |..+.|+|+|+|++||++++|. +..
T Consensus 100 ----------~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~--v~~ 167 (290)
T 1exn_A 100 ----------DEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS--RFS 167 (290)
T ss_dssp ----------HHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEE--EEE
T ss_pred ----------HHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEE--EEE
Confidence 566 9999999999 9999999998 999999999985 7777799999999999999873 222
Q ss_pred CCCCCCccEEEeHHHHHHHcCCCH-HHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhh-cCCCCC
Q 020008 146 PSSRKIPVMEFEVAKILEELNLTM-DQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPE 221 (332)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~gl~~-~q~id~~~L~G--~Dy~~~ipgiG~ktA~~li~~~~sle~il~~~~~~-~~~~~~ 221 (332)
+. ....++.+.+.++||++| +||+|+|+|+| ||+.+||||||||||++||++|||+|+|+++++.. +.++.+
T Consensus 168 ~~----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~ 243 (290)
T 1exn_A 168 FT----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQ 243 (290)
T ss_dssp TT----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHH
T ss_pred CC----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHH
Confidence 22 367899999999999999 99999999999 99999999999999999999999999999999876 433333
Q ss_pred CCchHHHHHHhCCCCcCCccchhccccCCCCHHHHHHHH
Q 020008 222 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260 (332)
Q Consensus 222 ~~~~~~~~~~f~~p~V~~~~~~~~l~~~~pd~~~l~~fl 260 (332)
++.........+..++++.+++ ++....-+...+..|.
T Consensus 244 ~L~~~~~~~~ls~~L~~i~~d~-~~~~~~~~l~~~~~~~ 281 (290)
T 1exn_A 244 NLNASEELLFRNLILVDLPTYC-VDAIAAVGQDVLDKFT 281 (290)
T ss_dssp HHHTCHHHHHHHHHHHCHHHHH-HHHHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhceeeeCC-CCCCChhhhhhhccch
Confidence 3332233334444556655554 3333333444444443
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=8.7e-46 Score=390.05 Aligned_cols=233 Identities=27% Similarity=0.379 Sum_probs=202.1
Q ss_pred CcCCCCCchhHHHHHHHHHHHHHHc-CCCcEEEEeCCCCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHHHhhhhh
Q 020008 2 LTNEAGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV 80 (332)
Q Consensus 2 l~~~~G~~t~~l~g~~~r~~~ll~~-gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k~~~r~~ 80 (332)
|+|++|.+|+|++||++++.++++. ++.|+|||||.++++|+++++.||++|+++|+++
T Consensus 33 l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe~l-------------------- 92 (832)
T 1bgx_T 33 LTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPEDF-------------------- 92 (832)
T ss_dssp CBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCCTTS--------------------
T ss_pred cccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHhccccChHHH--------------------
Confidence 7899999999999999999999974 6899999999999999999999999999999888
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEeccc-chHHHHHHHHH----cCCeEEEecCCCccccccCCceEEEeecCCCCCCccEE
Q 020008 81 KVTKQHNDDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 155 (332)
Q Consensus 81 ~vt~~~~~~~~~lL~~~Gi~~i~ap~-EADaq~A~L~~----~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~~~~~ 155 (332)
..|++.++++|++||||++++|| ||||+||+|++ .|+.++|+|+|+|++||++++|++... ++ ..
T Consensus 93 ---~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~---~g----~~ 162 (832)
T 1bgx_T 93 ---PRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP---EG----YL 162 (832)
T ss_dssp ---TTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS---SS----CC
T ss_pred ---HHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC---CC----cE
Confidence 57889999999999999999998 99999999988 688888999999999999999865432 11 56
Q ss_pred EeHHHHHHHcCCCHHHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHH-----H
Q 020008 156 FEVAKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-----A 228 (332)
Q Consensus 156 ~~~~~v~~~~gl~~~q~id~~~L~G--~Dy~~~ipgiG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~-----~ 228 (332)
|+.+.+.+++|++|+||+|+|+|+| |||++||||||+|||++||++|||+|+|++++++++.++++++.... .
T Consensus 163 ~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls 242 (832)
T 1bgx_T 163 ITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLS 242 (832)
T ss_dssp BCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSG
T ss_pred EcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHH
Confidence 8899999999999999999999999 99999999999999999999999999999999877666665554211 2
Q ss_pred HHHh-CCCCcCCccchhccccCCCCHHHHHHHHHHhcCCC
Q 020008 229 RRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 267 (332)
Q Consensus 229 ~~~f-~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~ 267 (332)
+.+. ..++|+...++ + .|..||.++|.+|| ++++|+
T Consensus 243 ~~L~~i~~d~~~~~~~-~-~~~~~d~~~l~~~~-~~~~f~ 279 (832)
T 1bgx_T 243 WDLAKVRTDLPLEVDF-A-KRREPDRERLRAFL-ERLEFG 279 (832)
T ss_dssp GGSSCCCSCCCCCCCC-C-CCCCCCHHHHHHHH-TTTTCC
T ss_pred HHHHhhccCCCCCCCh-h-HcCCccHHHHHHHH-HHcCCH
Confidence 2222 34444444455 4 89999999999999 699997
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.95 E-value=4.3e-28 Score=225.67 Aligned_cols=163 Identities=15% Similarity=0.085 Sum_probs=130.2
Q ss_pred CcCCCCCchhHHHH-HHHHHHHHHHc--CCCc---EEEEeCC-CCchhhhhHHHHhhchhhchHHHHHHHHcCCHHHHHH
Q 020008 2 LTNEAGEVTSHLQG-MFTRTIRLLEA--GMKP---IYVFDGQ-PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74 (332)
Q Consensus 2 l~~~~G~~t~~l~g-~~~r~~~ll~~--gi~P---v~VFDG~-~~~~K~~~~~~rk~~R~~~~~~l~~~~~~g~~~~~~k 74 (332)
+++++|.+|++++| |++.+.++++. +.+| +++||+. .++||++.++.||++|.++|+++.. ..+.+
T Consensus 32 f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~~-----Q~~~l-- 104 (305)
T 3h7i_A 32 FPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTW-----DWEGY-- 104 (305)
T ss_dssp SCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCSS-----CHHHH--
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHHH-----HHHHh--
Confidence 67899999999988 88888888763 2466 5579986 6899999999999999999999810 00000
Q ss_pred HhhhhhccCHHHH-HHHHHHHHHcCCCEEeccc-chHHHHHHHHH----cCCeEEEecCCCccccccC-CceEEEeecCC
Q 020008 75 FSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGA-PRFLRHLMDPS 147 (332)
Q Consensus 75 ~~~r~~~vt~~~~-~~~~~lL~~~Gi~~i~ap~-EADaq~A~L~~----~g~v~~V~S~DsD~l~fg~-~~vi~~l~~~~ 147 (332)
.+|+ +.++++|++||||++..|| ||||.||+|++ .|.-..|+|+|+|++|+.. ++|. ++...
T Consensus 105 ---------~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~--~~~~~ 173 (305)
T 3h7i_A 105 ---------FESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVK--QWSPM 173 (305)
T ss_dssp ---------HHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEE--EEETT
T ss_pred ---------hhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeE--EEecC
Confidence 2344 7899999999999999999 99999999987 4666679999999999998 6663 22222
Q ss_pred CCCCccEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCCCC---CCccHH
Q 020008 148 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI---RGIGGQ 193 (332)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~i---pgiG~k 193 (332)
. .+.|.+++|+ |+|++|+++|+| |.+||| ||||+.
T Consensus 174 ~---------~~~V~ek~Gv-P~q~iD~~aL~G-DsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 174 H---------KKWVKIKSGS-AEIDCMTKILKG-DKKDNVASVKVRSDF 211 (305)
T ss_dssp T---------TEEECSSCSC-HHHHHHHHHHHC-BGGGTBCCTTSCTTH
T ss_pred C---------HHHHHHHhCC-HHHHhhHHheeC-ccccCCCCCCcCCcc
Confidence 1 1346778998 999999999999 999876 578975
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.93 E-value=7.5e-05 Score=80.77 Aligned_cols=178 Identities=19% Similarity=0.281 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCCc---EE-EEeCCCCchhhhhHHHHhhchhh-chHHHHHHHHcCCHHHHHHHhhhhhccCHHHHHH
Q 020008 15 GMFTRTIRLLEAGMKP---IY-VFDGQPPDLKKQELAKRYSKRAD-ATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 89 (332)
Q Consensus 15 g~~~r~~~ll~~gi~P---v~-VFDG~~~~~K~~~~~~rk~~R~~-~~~~l~~~~~~g~~~~~~k~~~r~~~vt~~~~~~ 89 (332)
.+|..+-+|+.. ++| +| .+||.+|-.|......|+-+... +.....++...|....-..|-..++..-.+.+..
T Consensus 63 ~if~yid~l~~~-vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~ 141 (1140)
T 2y35_A 63 EIFNYVDKLFYL-IKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFDSNCITPGTEFMVR 141 (1140)
T ss_dssp HHHHHHHHHHHH-HCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSGGGSTTSHHHHH
T ss_pred HHHHHHHHHHhe-eccceeEEEEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccccccCCccccCCCcHHHHH
Confidence 334433344443 566 44 69999997776554444332211 1112223444454332222323333332233333
Q ss_pred HHHHHHH------------cCCCEEec----ccchHHHHHHHHHc---------CCeEEEecCCCcccccc----CCce-
Q 020008 90 CKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APRF- 139 (332)
Q Consensus 90 ~~~lL~~------------~Gi~~i~a----p~EADaq~A~L~~~---------g~v~~V~S~DsD~l~fg----~~~v- 139 (332)
+.+.|+. -++.+|.+ |||+|.-|-...+. +..++|++.|.|+++++ .+++
T Consensus 142 l~~~L~~~i~~k~~~d~~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ 221 (1140)
T 2y35_A 142 LQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFV 221 (1140)
T ss_dssp HHHHHHHHHHHHHHHCGGGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHHHHHhccCccccceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEE
Confidence 3332222 36778876 89999876666552 35678999999999987 2332
Q ss_pred -EEEeecCCC--C-----CCccEEEeHHHHHHHc------------CCC----HHHHHHHHHHhCCCCCCCCCCccHH
Q 020008 140 -LRHLMDPSS--R-----KIPVMEFEVAKILEEL------------NLT----MDQFIDLCILSGCDYCDSIRGIGGQ 193 (332)
Q Consensus 140 -i~~l~~~~~--~-----~~~~~~~~~~~v~~~~------------gl~----~~q~id~~~L~G~Dy~~~ipgiG~k 193 (332)
+|.-...+. + ...+..++...+.+.+ .++ .+.|+-+|.|+|+||.+++|++.+.
T Consensus 222 ilRe~v~f~~~~~~~~~~~~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~ 299 (1140)
T 2y35_A 222 VLREEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299 (1140)
T ss_dssp EEEESSCTTCCTTCCCGGGCEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTT
T ss_pred EeecccccccccccccccccceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccC
Confidence 332111110 0 1234566765544432 233 3577889999999999999988643
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=97.81 E-value=7.9e-05 Score=80.05 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCCc---E-EEEeCCCCchhhhhHHHHhhchh-hchHHHHHHHHcCCHH-HHHHHhhhhhccCHHHH
Q 020008 14 QGMFTRTIRLLEAGMKP---I-YVFDGQPPDLKKQELAKRYSKRA-DATDDLAEAVEAGNKE-DIEKFSKRTVKVTKQHN 87 (332)
Q Consensus 14 ~g~~~r~~~ll~~gi~P---v-~VFDG~~~~~K~~~~~~rk~~R~-~~~~~l~~~~~~g~~~-~~~k~~~r~~~vt~~~~ 87 (332)
..+|..+-+|+.. ++| + ..+||.+|-.|......|+-+.. ++.....++...|... ....|-..++..-.+.+
T Consensus 62 ~~if~yid~l~~~-vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM 140 (1155)
T 3pie_A 62 SKIFSYIDHLFHT-IKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFM 140 (1155)
T ss_pred HHHHHHHHHHHHh-cCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHH
Confidence 3445444455553 788 3 36999999777665554443222 1223344455555321 11223333443333444
Q ss_pred HHHHHHHHH------------cCCCEEec----ccchHHHHHHHHHc---------CCeEEEecCCCccccccC----Cc
Q 020008 88 DDCKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFGA----PR 138 (332)
Q Consensus 88 ~~~~~lL~~------------~Gi~~i~a----p~EADaq~A~L~~~---------g~v~~V~S~DsD~l~fg~----~~ 138 (332)
..+...|+. -++.+|.+ |||+|.-|....+. +..++|++.|+|+++++- ++
T Consensus 141 ~~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~ 220 (1155)
T 3pie_A 141 AKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHH 220 (1155)
T ss_pred HHHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCc
Confidence 444444432 25667766 89999877776652 346789999999999972 22
Q ss_pred --eEEEe--ecCCC------CCCccEEEeHHHHHHHc-------------CCC----HHHHHHHHHHhCCCCCCCCCCcc
Q 020008 139 --FLRHL--MDPSS------RKIPVMEFEVAKILEEL-------------NLT----MDQFIDLCILSGCDYCDSIRGIG 191 (332)
Q Consensus 139 --vi~~l--~~~~~------~~~~~~~~~~~~v~~~~-------------gl~----~~q~id~~~L~G~Dy~~~ipgiG 191 (332)
++|.- +.... ...++..++..-+.+.+ .++ -+.|+-+|.|+|+||.+++|.+.
T Consensus 221 f~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~ 300 (1155)
T 3pie_A 221 FCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLH 300 (1155)
T ss_pred EEEEeeccccCcccccccccccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccC
Confidence 34431 11111 01234567765444332 122 24677799999999999999886
Q ss_pred H
Q 020008 192 G 192 (332)
Q Consensus 192 ~ 192 (332)
+
T Consensus 301 I 301 (1155)
T 3pie_A 301 L 301 (1155)
T ss_pred c
Confidence 5
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=97.62 E-value=0.00022 Score=74.55 Aligned_cols=178 Identities=21% Similarity=0.317 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCCc---E-EEEeCCCCchhhhhHHHHhhchhhchH--------HHHHHHHcCCHHHH-----HHHh
Q 020008 14 QGMFTRTIRLLEAGMKP---I-YVFDGQPPDLKKQELAKRYSKRADATD--------DLAEAVEAGNKEDI-----EKFS 76 (332)
Q Consensus 14 ~g~~~r~~~ll~~gi~P---v-~VFDG~~~~~K~~~~~~rk~~R~~~~~--------~l~~~~~~g~~~~~-----~k~~ 76 (332)
..+|..+-+|+.. |+| + +.+||.+|-.|-.....|+-+.....+ ..+.+...|..... ..|-
T Consensus 83 ~~If~yid~l~~~-vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fD 161 (899)
T 3fqd_A 83 VAVFEYTDRILAM-VRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWD 161 (899)
T ss_dssp HHHHHHHHHHHHH-HCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHSCCCCC
T ss_pred HHHHHHHHHHHHH-cCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCccccccccCCC
Confidence 3444444445543 677 2 368999998777665555432211111 11112233421100 0111
Q ss_pred hhhhccCHHHHHHHHHHHHH------------cCCCEEec----ccchHHHHHHHHHc---------CCeEEEecCCCcc
Q 020008 77 KRTVKVTKQHNDDCKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDS 131 (332)
Q Consensus 77 ~r~~~vt~~~~~~~~~lL~~------------~Gi~~i~a----p~EADaq~A~L~~~---------g~v~~V~S~DsD~ 131 (332)
..+++.-...+..+...|+. -++.+|.+ |||+|.-|....+. +..++|++.|.|+
T Consensus 162 sN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADL 241 (899)
T 3fqd_A 162 SNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADL 241 (899)
T ss_dssp GGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTH
T ss_pred cCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccH
Confidence 22333322344444444432 26778876 89999988777662 3567899999999
Q ss_pred cccc----CCc--eEEEe--ecCCC------------------------CCCccEEEeHHHHHHHc----CC-------C
Q 020008 132 LTFG----APR--FLRHL--MDPSS------------------------RKIPVMEFEVAKILEEL----NL-------T 168 (332)
Q Consensus 132 l~fg----~~~--vi~~l--~~~~~------------------------~~~~~~~~~~~~v~~~~----gl-------~ 168 (332)
+++| .++ |+|-- +..+. ...++..+++.-+.+.+ .+ +
T Consensus 242 ImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d 321 (899)
T 3fqd_A 242 IMLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFD 321 (899)
T ss_dssp HHHHHHTTCSSEEEEEECCC---------CTTTTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCC
T ss_pred hHHhhhccCCceEEEeeecccCcCccccchhhhccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCch
Confidence 9997 233 33321 11000 01234566766554433 22 2
Q ss_pred ----HHHHHHHHHHhCCCCCCCCCCccH
Q 020008 169 ----MDQFIDLCILSGCDYCDSIRGIGG 192 (332)
Q Consensus 169 ----~~q~id~~~L~G~Dy~~~ipgiG~ 192 (332)
-+.||-+|.|+|+||.+++|.+-+
T Consensus 322 ~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 322 LERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp HHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred hhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 258888999999999999997654
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.65 E-value=0.00086 Score=47.90 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
+.|||||++++..|++.|||+++|.+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 57999999999999999999988864
No 16
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.24 E-value=0.0027 Score=48.01 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
+.|||||++++..||+.|||+++|.+
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~ 46 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAA 46 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 36899999999999999999998865
No 17
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=94.92 E-value=0.02 Score=43.29 Aligned_cols=27 Identities=15% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~~ 211 (332)
.+|||||+++|..|++.||++++++..
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 369999999999999999999888753
No 18
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.86 E-value=0.021 Score=41.23 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILEN 211 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~~ 211 (332)
+|||||+++|..|+..|+++++++..
T Consensus 18 ~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 18 GLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp TSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 69999999999999999999888653
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.86 E-value=0.01 Score=43.71 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~~ 211 (332)
.+|||||+++|.+|+..|++++++.+.
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 368999999999999999999888754
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.41 E-value=0.029 Score=42.60 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
+|||||+++|..|+..|++++++++
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~~~l~~ 60 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSLEQLIA 60 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHS
T ss_pred cCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 5899999999999999999988764
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=93.99 E-value=0.03 Score=49.73 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
++|||||+++|..|++.|||+++|.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 78999999999999999999988754
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=90.98 E-value=0.042 Score=49.00 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHHH
Q 020008 184 CDSIRGIGGQTALKLIRQHGSIETILEN 211 (332)
Q Consensus 184 ~~~ipgiG~ktA~~li~~~~sle~il~~ 211 (332)
.++|||||+++|..|++.|||+++|.+.
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp ----------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 3689999999999999999999887653
No 23
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=88.73 E-value=0.19 Score=44.04 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.6
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
+|||||+++|..|++.||+++++++
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~ 190 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFT 190 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTT
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 5999999999999999999888753
No 24
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=87.65 E-value=0.25 Score=42.78 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHhhc----CCCCCCCchHHHHHHh--CCCCcCC-ccchhccccCCCCHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF--KEPEVVT-DEEQLQIKWSAPDEEGLIN 258 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~~~~~~~----~~~~~~~~~~~~~~~f--~~p~V~~-~~~~~~l~~~~pd~~~l~~ 258 (332)
+|||||||+|..|+..|++ +.+.+.+.... .++| ......|..++ ++..+.. .... . .-.....+.+.+
T Consensus 76 ~v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d~~~L~~vp-GIG~K~A~rI~~~lk~k~~~~~~~~-~-~~~~~~~~ea~~ 151 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPP-RLLARALLEGDARLLTSAS-GVGRRLAERIALELKGKVPPHLLAG-E-KVESEAAEEAVM 151 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHTTST-TCCHHHHHHHHHHHTTTSCSCC------------------
T ss_pred cCCCcCHHHHHHHHHhCCh-HHHHHHHHhCCHHHHHhCC-CCCHHHHHHHHHHHHHhhccccccc-c-ccccccHHHHHH
Confidence 3999999999999999997 33433332110 1222 12223333332 1222210 0000 0 000112234555
Q ss_pred HHHHhcCCChHHHHHHHHHH
Q 020008 259 FLVSENGFNSDRVTKAIEKI 278 (332)
Q Consensus 259 fl~~~~~f~~~rv~~~~~~l 278 (332)
-| ..+||++..+.+++..+
T Consensus 152 AL-~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 152 AL-AALGFKEAQARAVVLDL 170 (191)
T ss_dssp --------------------
T ss_pred HH-HHcCCCHHHHHHHHHHH
Confidence 55 48999998888888766
No 25
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=85.86 E-value=0.48 Score=45.80 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=23.0
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
.||||||.+|..||.+|||++.+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHh
Confidence 4899999999999999999998875
No 26
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=84.64 E-value=0.43 Score=41.70 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHcCC
Q 020008 187 IRGIGGQTALKLIRQHGS 204 (332)
Q Consensus 187 ipgiG~ktA~~li~~~~s 204 (332)
|+|||||+|..|+..|++
T Consensus 78 V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSA 95 (203)
T ss_dssp SSSCCHHHHHHHHHHSCH
T ss_pred CCCcCHHHHHHHHhhCCh
Confidence 999999999999999997
No 27
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=82.01 E-value=0.69 Score=40.70 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHH
Q 020008 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 209 (332)
Q Consensus 162 ~~~~gl~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~~~sle~il 209 (332)
...||+....-.++..++. +|+|||||+|..+|..|+. +.+.
T Consensus 73 ~~LyGF~~~~Er~lf~~L~-----sv~GIGpk~A~~Ils~~~~-~~l~ 114 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLL-----SVSGVGPRLAMAALAVHDA-PALR 114 (212)
T ss_dssp EEEEEESSHHHHHHHHHHH-----TSTTCCHHHHHHHHHHSCH-HHHH
T ss_pred cceEecCcHHHHHHHHHhc-----CcCCcCHHHHHHHHHhCCH-HHHH
Confidence 4456775445555555444 2999999999999999874 4443
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=75.62 E-value=0.67 Score=37.71 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.2
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ--HGSIETIL 209 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~--~~sle~il 209 (332)
.+|||||++|-++|+. |.++|+++
T Consensus 67 ~LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 3799999999999953 45666554
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=73.24 E-value=0.7 Score=41.45 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQ-HGSIETIL 209 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~-~~sle~il 209 (332)
..||||||++|..|+.. |++++.|.
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp --------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 46899999999999998 88988875
No 30
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=70.47 E-value=3.2 Score=38.17 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=26.7
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~~~~~ 214 (332)
.||||++..|..++.+|+|+..+++.++.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 47999999999999999999999998864
No 31
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=67.83 E-value=1.1 Score=45.54 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~~ 211 (332)
-||||||+++|..|++.|+|++.+.+.
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp ---------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 478999999999999999999887654
No 32
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=67.65 E-value=6.6 Score=39.43 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ-HGSIETILENI 212 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~-~~sle~il~~~ 212 (332)
+|+|||||+|..|+.. +.|++++.+.+
T Consensus 101 ~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 101 GVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 5788888888888875 45777776653
No 33
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=67.31 E-value=3 Score=42.82 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
.||||||+++|..|++.|+|++.+.+
T Consensus 515 lgi~~VG~~~Ak~La~~Fgsl~~l~~ 540 (671)
T 2owo_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (671)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred hcccCccHHHHHHHHHHcCCHHHHHh
Confidence 47899999999999999999998754
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=65.53 E-value=2.9 Score=29.88 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHc
Q 020008 186 SIRGIGGQTALKLIRQH 202 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (332)
.|||||+++|.+++..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 57999999999999864
No 35
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=65.25 E-value=3.9 Score=38.28 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ-HGSIETILEN 211 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~-~~sle~il~~ 211 (332)
+||||||+||.+|..+ +.|++++.+.
T Consensus 100 ~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 6899999999999876 3488887764
No 36
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=63.83 E-value=3.3 Score=39.46 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHH
Q 020008 187 IRGIGGQTALKLIRQHGSIETILEN 211 (332)
Q Consensus 187 ipgiG~ktA~~li~~~~sle~il~~ 211 (332)
||+||++.|-+|+.+|||+++|+.+
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 7999999999999999999998854
No 37
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=63.19 E-value=10 Score=36.17 Aligned_cols=41 Identities=34% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHH
Q 020008 167 LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 213 (332)
Q Consensus 167 l~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~~~sle~il~~~~ 213 (332)
++.++......|.- +||||++++.+|+..||+.+++++.+.
T Consensus 17 m~~~e~~~wL~L~~------~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLIR------AENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHHT------STTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 45556666666653 689999999999999999999887653
No 38
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=61.92 E-value=3.9 Score=38.28 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~-~~sle~il~ 210 (332)
+||||||+||.+|..+ +.|++++.+
T Consensus 102 ~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 102 RVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 6899999999999887 237888776
No 39
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=61.82 E-value=4.6 Score=38.52 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.6
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~-~~sle~il~ 210 (332)
+||||||+||.+|..+ +.|++++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 5899999999999887 237887774
No 40
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=60.89 E-value=5.4 Score=40.00 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ--HGSIETILENIN 213 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~--~~sle~il~~~~ 213 (332)
+|+|||||+|..++.. +.+++++...+.
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4789999999999886 467888776553
No 41
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=59.70 E-value=6.9 Score=33.95 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhCCC---CC--CCCCCccHHHHHHHHHH-----cCCHHHHHHHH
Q 020008 167 LTMDQFIDLCILSGCD---YC--DSIRGIGGQTALKLIRQ-----HGSIETILENI 212 (332)
Q Consensus 167 l~~~q~id~~~L~G~D---y~--~~ipgiG~ktA~~li~~-----~~sle~il~~~ 212 (332)
-+.+.|+++..-++-- .. ..+||||+++|..+|.. |.|++++.+.+
T Consensus 112 ~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV 167 (205)
T 2i5h_A 112 QDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV 167 (205)
T ss_dssp TTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred hchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 4567888876555521 11 14799999999999974 67888877654
No 42
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=59.62 E-value=5 Score=37.91 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=19.8
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ-HGSIETIL 209 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~-~~sle~il 209 (332)
+||||||+||.+|..+ +.|++++.
T Consensus 106 ~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 6899999999999887 23777766
No 43
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=59.08 E-value=4.5 Score=41.46 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.6
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETIL 209 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il 209 (332)
-||||||+++|..|++.|++++.+.
T Consensus 510 lGI~~VG~~~Ak~La~~Fgsl~~l~ 534 (667)
T 1dgs_A 510 LGLPGVGEVLARNLARRFGTMDRLL 534 (667)
T ss_dssp TTCSSCCHHHHHHHHHTTSBHHHHT
T ss_pred hccCCccHHHHHHHHHHcCCHHHHH
Confidence 4799999999999999999998874
No 44
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=59.08 E-value=2.4 Score=32.53 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHH
Q 020008 186 SIRGIGGQTALKLIRQ--HGSIETI 208 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~--~~sle~i 208 (332)
.+||||++.|.++|.. |.+++++
T Consensus 30 ~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 30 QYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 4799999999999983 3344443
No 45
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=53.82 E-value=8.5 Score=38.80 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.1
Q ss_pred HHHHHHHHcCCCEE
Q 020008 89 DCKRLLKLMGVPVV 102 (332)
Q Consensus 89 ~~~~lL~~~Gi~~i 102 (332)
...+.|+.+|+|+.
T Consensus 241 e~l~~L~~~Gf~v~ 254 (586)
T 4glx_A 241 GRLLQFKKWGLPVS 254 (586)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCc
Confidence 45567888998864
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=47.28 E-value=9.4 Score=33.35 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHhCCCCC--CCCCCccHHHHHHHHHHcC
Q 020008 177 ILSGCDYC--DSIRGIGGQTALKLIRQHG 203 (332)
Q Consensus 177 ~L~G~Dy~--~~ipgiG~ktA~~li~~~~ 203 (332)
++.+ |.. ..|||||+|+|-+++.++.
T Consensus 117 I~~~-d~~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 117 LADG-NVAALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHTT-CHHHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHhC-CHHHHhhCCCCCHHHHHHHHHHHH
Confidence 4445 554 3689999999999988754
No 47
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=46.51 E-value=8.2 Score=33.71 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=12.9
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.+||||+|+|.+|.-
T Consensus 30 ~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAF 44 (212)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 689999999988864
No 48
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.78 E-value=15 Score=23.13 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
.|+.+.+..++ ++||+++++..+|+.
T Consensus 2 ~p~e~~i~~L~--~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 2 TPKSLAVEELS--GMGFTEEEAHNALEK 27 (43)
T ss_dssp CHHHHHHHHHH--TTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 35667776664 899999988888765
No 49
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=43.28 E-value=30 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHHHHcCCC-----EEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~-----~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
|+..+++-+.+.|...|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1rvv_A 26 ITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAII 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 3456788888999999864 788999 7777888889888788877
No 50
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=41.61 E-value=31 Score=28.46 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHHHHcCCC-----EEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~-----~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
|+..+++-+.+.|...|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1hqk_A 26 LVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVI 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 3456788888999999874 788999 7777888888888788877
No 51
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=40.90 E-value=11 Score=33.18 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.9
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.+||||+|+|.+|.-
T Consensus 16 ~LPGIG~KSA~RlA~ 30 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAF 30 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 579999999988864
No 52
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=40.86 E-value=24 Score=29.26 Aligned_cols=44 Identities=34% Similarity=0.373 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHcC-C-----CEEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMG-V-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~G-i-----~~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
|+..+++-+.+.|...| + .++..|| |-=-.+..|++.|..|+|+
T Consensus 26 I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 77 (156)
T 3nq4_A 26 INDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVV 77 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 34667888889999998 5 6788999 8878888888888777776
No 53
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=40.57 E-value=14 Score=27.78 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHc
Q 020008 186 SIRGIGGQTALKLIRQH 202 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (332)
.|||||+++|.+|+..+
T Consensus 44 ~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 44 SLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HSTTCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHH
Confidence 58999999999999864
No 54
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=38.95 E-value=20 Score=29.75 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHHHHcCC-----CEEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi-----~~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
|+..+++-+.+.|...|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 24 I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 74 (158)
T 1di0_A 24 IVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 346677888888988885 5788999 7777888889888888887
No 55
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=38.76 E-value=35 Score=28.37 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHH-cCCC-----EEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 83 TKQHNDDCKRLLKL-MGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 83 t~~~~~~~~~lL~~-~Gi~-----~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
+..+++-+.+.|.. .|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 32 ~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 82 (159)
T 1kz1_A 32 IEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVI 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 45677888888888 8864 888999 7777888888888777776
No 56
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=38.53 E-value=16 Score=31.33 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.2
Q ss_pred CCCCCccHHHHHHHHHHcC
Q 020008 185 DSIRGIGGQTALKLIRQHG 203 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~ 203 (332)
-.+||||+|+|.+++.++.
T Consensus 110 ~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 110 TSASGVGRRLAERIALELK 128 (191)
T ss_dssp TTSTTCCHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHHH
Confidence 3689999999999988764
No 57
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=38.00 E-value=21 Score=36.02 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 020008 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (332)
Q Consensus 185 ~~ipgiG~ktA~~li~~~~sle~il~ 210 (332)
-|||+||..+|..|.+.|++++.+.+
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~ 540 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHc
Confidence 47999999999999999999998865
No 58
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=37.88 E-value=32 Score=34.33 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=27.8
Q ss_pred HHHHHHcCC-CHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHH
Q 020008 159 AKILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201 (332)
Q Consensus 159 ~~v~~~~gl-~~~q~id~~~L~G~Dy~~~ipgiG~ktA~~li~~ 201 (332)
..+++.+|+ +++++.. ++..| | ...+||||+|+|.+++..
T Consensus 107 ~~~~~~lg~~~~~~l~~-a~~~~-~-l~~~~GiG~k~a~~i~~~ 147 (575)
T 3b0x_A 107 RLLYEGLGIDSLEKLKA-ALDRG-D-LTRLKGFGPKRAERIREG 147 (575)
T ss_dssp HHHHHTSCCCSHHHHHH-HHHHT-G-GGGSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH-HHHcC-C-cccCCCCCccHHHHHHHH
Confidence 344555665 7777766 34456 6 347899999999999654
No 59
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=37.65 E-value=5.2 Score=22.67 Aligned_cols=14 Identities=57% Similarity=0.945 Sum_probs=9.9
Q ss_pred cCCCCccccccCccc
Q 020008 284 KSSQGRLESFFKPVA 298 (332)
Q Consensus 284 ~~~Q~~l~~ff~~~~ 298 (332)
...| +||+||+...
T Consensus 7 ~g~~-TLesFFK~L~ 20 (26)
T 2zvk_U 7 EGMQ-TLESFFKPLT 20 (26)
T ss_pred cccc-cHHHHhccCC
Confidence 3445 8999998643
No 60
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=37.41 E-value=54 Score=32.21 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCEEecccchHHHHHHHHHc
Q 020008 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118 (332)
Q Consensus 87 ~~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~ 118 (332)
+.++.+-|+.+|++.++.-|++.+. ..|++.
T Consensus 97 L~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~ 127 (506)
T 3umv_A 97 LRRLAADAAARHLPFFLFTGGPAEI-PALVQR 127 (506)
T ss_dssp HHHHHHHHHHTTCCEEEESSCTTHH-HHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecChHHH-HHHHHh
Confidence 4555666666777777766666666 666554
No 61
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.40 E-value=30 Score=22.23 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
.+|.+.|..++ ++||+++++..+|..
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 7 GVNQQQLQQLM--DMGFTREHAMEALLN 32 (47)
T ss_dssp SSCHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 56888888876 799999988888764
No 62
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=37.31 E-value=35 Score=28.24 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHHHHcCC----CEEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMGV----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi----~~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
|+..+++-+.+.|...|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 27 I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (156)
T 1c2y_A 27 VTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 76 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 345678888899999986 5888999 7777888888888888887
No 63
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.71 E-value=41 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 7 GPPEDCVTTIV--SMGFSRDQALKALRA 32 (63)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 57888888776 799999988888865
No 64
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=36.71 E-value=63 Score=26.29 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCEEecc----------cchHHHHH----HHHHcCCeEEEecCCCcccccc
Q 020008 87 NDDCKRLLKLMGVPVVEAP----------SEAEAQCA----ALCKSGQVYAVASEDMDSLTFG 135 (332)
Q Consensus 87 ~~~~~~lL~~~Gi~~i~ap----------~EADaq~A----~L~~~g~v~~V~S~DsD~l~fg 135 (332)
....++.|+..|+.++.-| +.+|-.++ .++..--..+++|+|+|+....
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv 125 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLV 125 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHH
Confidence 3456678888999776554 24553332 2233434667899999988653
No 65
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=36.31 E-value=22 Score=29.50 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHHHcCC-----CEEeccc--chHHHHHHHHHcCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi-----~~i~ap~--EADaq~A~L~~~g~v~~V~ 125 (332)
|+..+++-+.+.|...|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 25 I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 75 (157)
T 2obx_A 25 IVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVL 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 346678888888888885 4788999 7777888888888888887
No 66
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.45 E-value=1.8e+02 Score=26.81 Aligned_cols=102 Identities=13% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCCC---------CCccHHHHHHHHHHcC-----CHHHHHHHHHhhc-CCCCCCCchHH
Q 020008 163 EELNLTMDQFIDLCILSGCDYCDSI---------RGIGGQTALKLIRQHG-----SIETILENINRER-YQIPEDWPYQE 227 (332)
Q Consensus 163 ~~~gl~~~q~id~~~L~G~Dy~~~i---------pgiG~ktA~~li~~~~-----sle~il~~~~~~~-~~~~~~~~~~~ 227 (332)
..+|++++++..+....-.=...++ =|+-+....++|+++| +++.+-..+.-.. .-+. ..+
T Consensus 54 ~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~----~~~ 129 (335)
T 4fp9_B 54 LDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLG----EGK 129 (335)
T ss_dssp HHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCT----TTT
T ss_pred HHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCC----HHH
Confidence 3579999988877665331000010 1666777778888776 3444433332111 1122 222
Q ss_pred HHH-HhCCCCcCCccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHH
Q 020008 228 ARR-LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 276 (332)
Q Consensus 228 ~~~-~f~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~ 276 (332)
++. +...|.+- ..+.-....-..||...+||+.+.|...+.
T Consensus 130 i~~ll~~~P~lL--------~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~ 171 (335)
T 4fp9_B 130 LKRVLYCCPEIF--------TMRQQDINDTVRLLKEKCLFTVQQVTKILH 171 (335)
T ss_dssp HHHHHHHCGGGG--------TSCHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHhCchhh--------ccChHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 22344432 121112334445665678888877776654
No 67
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=34.31 E-value=4.2 Score=37.39 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=26.8
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~~~~~ 214 (332)
.|||||+++|..++..|+++..+++.++.
T Consensus 237 ~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 237 QVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp CSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 58999999999999999999999998874
No 68
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=32.95 E-value=20 Score=30.97 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.9
Q ss_pred CCCCccHHHHHHHHHHc
Q 020008 186 SIRGIGGQTALKLIRQH 202 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (332)
.+||||+|+|.+++.++
T Consensus 112 ~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 112 KLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TSTTCCHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 58999999999998764
No 69
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=32.69 E-value=20 Score=30.79 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.4
Q ss_pred CCCCccHHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ 201 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (332)
.+||||++||--++.-
T Consensus 121 ~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 121 NIKGIGMQEASHFLRN 136 (207)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5899999999887754
No 70
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.27 E-value=46 Score=23.80 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEKI 278 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~l 278 (332)
.+|.+.|..++ ++||+++++.++|+.-
T Consensus 7 ~~~e~~v~~L~--~MGF~~~~a~~AL~~t 33 (74)
T 2dag_A 7 GLDESVIIQLV--EMGFPMDACRKAVYYT 33 (74)
T ss_dssp SSCHHHHHHHH--HHSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 46888887776 7999999999888754
No 71
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=31.69 E-value=82 Score=21.71 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHHcCCeEEEecCCCccccccCCceEEEeecCCCCCCccEEEeHHHHHHHcCCCHHHHHH
Q 020008 105 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFID 174 (332)
Q Consensus 105 p~EADaq~A~L~~~g~v~~V~S~DsD~l~fg~~~vi~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id 174 (332)
|.-..+.+..|.+.|+...=.+++-..+.-..... ..+-.. .. .+....+..|+...|++.++|.+
T Consensus 4 p~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~~-~~vP~h--~~-ei~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRI-VVVPFH--SG-ELPKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCE-EEEECS--SS-SCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHCCCEEeCCCCCCceEecCCCCe-eEecCC--cC-cCCHHHHHHHHHHcCCCHHHHhh
Confidence 33455666666677765322344444443222221 122211 11 45667889999999999999865
No 72
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=31.42 E-value=62 Score=27.04 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHHHHcCCC-----EEeccc--chHHHHHHHHH-----cCCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCK-----SGQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~Gi~-----~i~ap~--EADaq~A~L~~-----~g~v~~V~ 125 (332)
|+..+++-+.+.|...|+. ++..|| |-=-.+..|++ .+..|+|+
T Consensus 30 I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavI 85 (168)
T 1ejb_A 30 IIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVI 85 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEE
Confidence 3466788899999999875 678999 76677778877 56677776
No 73
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.77 E-value=56 Score=22.55 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
.+|.+.|..++ ++||+.+++..+|+.
T Consensus 7 ~~~~~~I~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 1wji_A 7 GVDEKALKHIT--EMGFSKEASRQALMD 32 (63)
T ss_dssp SSCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46778887775 899999998888764
No 74
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=30.60 E-value=37 Score=26.58 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHcC
Q 020008 187 IRGIGGQTALKLIRQHG 203 (332)
Q Consensus 187 ipgiG~ktA~~li~~~~ 203 (332)
|.|||..+|..++++.+
T Consensus 21 I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 21 IYGVGKTRSKAILAAAG 37 (114)
T ss_dssp STTCCHHHHHHHHHHTT
T ss_pred hcCcCHHHHHHHHHHcC
Confidence 67999999999999876
No 75
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=30.14 E-value=64 Score=31.92 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=20.8
Q ss_pred HHHHHHHHHHc---CCCEEecccchHHHHHHHHHc
Q 020008 87 NDDCKRLLKLM---GVPVVEAPSEAEAQCAALCKS 118 (332)
Q Consensus 87 ~~~~~~lL~~~---Gi~~i~ap~EADaq~A~L~~~ 118 (332)
+.++.+-|+.+ |++.++.-|++.+.+..|++.
T Consensus 63 L~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~ 97 (538)
T 3tvs_A 63 LQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQ 97 (538)
T ss_dssp HHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 44555566666 777777667776666666654
No 76
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=30.12 E-value=25 Score=30.53 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.5
Q ss_pred CCCCccHHHHHHHHHHc
Q 020008 186 SIRGIGGQTALKLIRQH 202 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (332)
++||||+|||--++...
T Consensus 129 ~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HSTTCCHHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 57999999997776543
No 77
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=29.25 E-value=23 Score=30.67 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.1
Q ss_pred CCCCccHHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIRQ 201 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (332)
.+||||++||--++.-
T Consensus 125 ~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 125 DQKGIGKESADAILCY 140 (218)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 4799999999877753
No 78
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=29.18 E-value=22 Score=30.99 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.8
Q ss_pred CCCCccHHHHHHHHHHcC
Q 020008 186 SIRGIGGQTALKLIRQHG 203 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~ 203 (332)
.+||||++||--++..++
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 579999999977765444
No 79
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=28.72 E-value=77 Score=19.05 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 251 pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
|+.+..++-|+ .+||++++...+|..
T Consensus 2 ~~~~~~i~~L~-~mGf~~~~a~~AL~~ 27 (40)
T 1z96_A 2 PGLNSKIAQLV-SMGFDPLEAAQALDA 27 (40)
T ss_dssp -CHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 45444455553 679999888887764
No 80
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.68 E-value=62 Score=23.01 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 249 ~~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
..++.+.|..++ ++||+++++..+|+.
T Consensus 26 ~~~~~~~v~~L~--~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 26 SDIDQSSVDTLL--SFGFAEDVARKALKA 52 (73)
T ss_dssp CSSCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 358888887775 899999999888864
No 81
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=27.53 E-value=39 Score=30.61 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred eHHHHHHHcCCCHHH-------HHHHHHHhCCCCC-------CC--------------------CCCccHHHHHHHHHHc
Q 020008 157 EVAKILEELNLTMDQ-------FIDLCILSGCDYC-------DS--------------------IRGIGGQTALKLIRQH 202 (332)
Q Consensus 157 ~~~~v~~~~gl~~~q-------~id~~~L~G~Dy~-------~~--------------------ipgiG~ktA~~li~~~ 202 (332)
++..++.+.|++|+. |-.++.++.+|.- .| -.|+|-|||-.|++.|
T Consensus 352 tlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllraf 431 (519)
T 2csb_A 352 TLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAF 431 (519)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHh
Confidence 456677788888743 3345666666632 11 1499999999999999
Q ss_pred CCHHHHHHHHHhh---cCCCCCCCchHHHHHHhCCCCcCCccchhccccCCCCHHHHHHHHHHhcCCC
Q 020008 203 GSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 267 (332)
Q Consensus 203 ~sle~il~~~~~~---~~~~~~~~~~~~~~~~f~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~ 267 (332)
|+.+.+-+-.... +..--+..-. .+ +...|+-... -++....|.+....+|.+.-|++
T Consensus 432 gnpervkqlarefeieklasvegvge-rv----lrslvpgyas--lisirgidreraerllkkyggys 492 (519)
T 2csb_A 432 GNPERVKQLAREFEIEKLASVEGVGE-RV----LRSLVPGYAS--LISIRGIDRERAERLLKKYGGYS 492 (519)
T ss_dssp SSHHHHHHHHHTTCHHHHHTSTTCSH-HH----HHHHSTTHHH--HHTSTTCCHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHHHhHHHHhhccchHH-HH----HHHhccchhh--heeeccccHHHHHHHHHHhCChh
Confidence 9999876543321 0000011111 11 1112221112 36678899999999986555664
No 82
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.34 E-value=64 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 249 ~~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
..|+.+.|..++ ++||++++++.+|+.
T Consensus 26 ~~~~ee~I~~Lv--~MGF~~~~A~~AL~~ 52 (83)
T 1veg_A 26 ASPSQESINQLV--YMGFDTVVAEAALRV 52 (83)
T ss_dssp CCCCHHHHHHHH--HHSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 456778887775 899999999988874
No 83
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.21 E-value=30 Score=24.04 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 020008 249 SAPDEEGLINFLVSENGFNSDRVTKAIEKI 278 (332)
Q Consensus 249 ~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l 278 (332)
..||.+.|..++ ++||+.+++.++|..-
T Consensus 6 ~~~~e~~v~~L~--~MGF~~~~a~~AL~~t 33 (64)
T 2crn_A 6 SGSSPSLLEPLL--AMGFPVHTALKALAAT 33 (64)
T ss_dssp CCCSCSSHHHHH--HTSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 356767776665 7999999999888643
No 84
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=26.86 E-value=27 Score=30.24 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.6
Q ss_pred CCCccHHHHHHHHHH
Q 020008 187 IRGIGGQTALKLIRQ 201 (332)
Q Consensus 187 ipgiG~ktA~~li~~ 201 (332)
+||||++||--++..
T Consensus 120 lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 120 LPGVGKYTCAAVMCL 134 (221)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 799999998877754
No 85
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=26.78 E-value=97 Score=21.67 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhc-cCHHHHHHHHHHHHHcCCCEEec
Q 020008 69 KEDIEKFSKRTVK-VTKQHNDDCKRLLKLMGVPVVEA 104 (332)
Q Consensus 69 ~~~~~k~~~r~~~-vt~~~~~~~~~lL~~~Gi~~i~a 104 (332)
..++..+...... ++.++++.+...|..+||.++..
T Consensus 26 y~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~ 62 (72)
T 2k6x_A 26 YEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVEN 62 (72)
T ss_dssp HHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCC
T ss_pred HHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccC
Confidence 4444444332222 67889999999999999998754
No 86
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=26.77 E-value=51 Score=30.63 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=26.5
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 020008 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (332)
Q Consensus 186 ~ipgiG~ktA~~li~~~~sle~il~~~~~ 214 (332)
-||||.+-.|..++++|+++-.+++.++.
T Consensus 259 qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~ 287 (341)
T 2ziu_B 259 QLNRVSLEMASAVVNAYPSPQLLVQAYQQ 287 (341)
T ss_dssp TSTTCCHHHHHHHHHHSCSHHHHHHHHHT
T ss_pred HccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 37999999999999999999999998864
No 87
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.54 E-value=10 Score=31.33 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHcC
Q 020008 187 IRGIGGQTALKLIRQHG 203 (332)
Q Consensus 187 ipgiG~ktA~~li~~~~ 203 (332)
|.|||..+|..++++.+
T Consensus 33 I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 33 IKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHHHcC
Confidence 68999999999999875
No 88
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=26.32 E-value=28 Score=30.21 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.0
Q ss_pred CCCccHHHHHHHHH
Q 020008 187 IRGIGGQTALKLIR 200 (332)
Q Consensus 187 ipgiG~ktA~~li~ 200 (332)
+||||++||--++.
T Consensus 114 lpGIG~~TA~~il~ 127 (225)
T 1kg2_A 114 LPGVGRSTAGAILS 127 (225)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 79999999877665
No 89
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=26.25 E-value=28 Score=30.46 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.4
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.+||||++||--++.
T Consensus 142 ~lpGIG~kTA~~ill 156 (233)
T 2h56_A 142 AIKGIGQWTAEMFMM 156 (233)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999877664
No 90
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=26.24 E-value=2.3e+02 Score=23.87 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=23.6
Q ss_pred HHHcCCCEEecccc---------hHHHHHHHHHcCCeEEEecCCC
Q 020008 94 LKLMGVPVVEAPSE---------AEAQCAALCKSGQVYAVASEDM 129 (332)
Q Consensus 94 L~~~Gi~~i~ap~E---------ADaq~A~L~~~g~v~~V~S~Ds 129 (332)
|...|+=++...++ +|..|.++|...-. .|||+|.
T Consensus 91 L~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~~g-~IVSND~ 134 (185)
T 3v32_B 91 LEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDG-IVVSNDT 134 (185)
T ss_dssp HHHTTCEEEECCCC-------CCHHHHHHHHHHHTTC-EEECSCC
T ss_pred HHHCCCEEECCCcccCCCcccCccHHHHHHHHHHcCC-EEEeCcc
Confidence 33457777766653 78889999885444 3778873
No 91
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=26.09 E-value=72 Score=27.56 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccc
Q 020008 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 132 (332)
Q Consensus 89 ~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l 132 (332)
.+.+.++..|++++.-.-.-.+.+..|...| ||+|+|++.+.+
T Consensus 198 ~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~G-vdgI~TD~p~~~ 240 (247)
T 2otd_A 198 ARVMQLKDAGLRILVYTVNKPQHAAELLRWG-VDCICTDAIDVI 240 (247)
T ss_dssp HHHHHHHHTTCEEEEECCCCHHHHHHHHHHT-CSEEEESCTTTS
T ss_pred HHHHHHHHCCCEEEEEccCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 4445556677776655442234455555555 667777766654
No 92
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.57 E-value=38 Score=22.05 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 251 pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
++.+.+..++ ++||+++++..+|+.
T Consensus 7 ~~~~~i~~L~--~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 7 EYETMLTEIM--SMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHH--HTTCCHHHHHHHHHT
T ss_pred cCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 3445665554 899999998888864
No 93
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=23.72 E-value=34 Score=29.79 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=11.9
Q ss_pred CCCccHHHHHHHHH
Q 020008 187 IRGIGGQTALKLIR 200 (332)
Q Consensus 187 ipgiG~ktA~~li~ 200 (332)
+||||++||--++.
T Consensus 118 lpGIG~~TA~~il~ 131 (226)
T 1orn_A 118 LPGVGRKTANVVVS 131 (226)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHH
Confidence 79999999877764
No 94
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=23.70 E-value=69 Score=26.43 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHHHHHcC--CCEEeccc--chHHHHHHHHHc-----CCeEEEe
Q 020008 82 VTKQHNDDCKRLLKLMG--VPVVEAPS--EAEAQCAALCKS-----GQVYAVA 125 (332)
Q Consensus 82 vt~~~~~~~~~lL~~~G--i~~i~ap~--EADaq~A~L~~~-----g~v~~V~ 125 (332)
|+..+++-+.+.|...| |.++..|| |-=-.+..|++. +..|+|+
T Consensus 26 I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavI 78 (157)
T 2i0f_A 26 LADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFV 78 (157)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEE
Confidence 34567778888888887 45778899 777788888877 7777776
No 95
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=23.51 E-value=20 Score=19.88 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.0
Q ss_pred CCCCccccccCcc
Q 020008 285 SSQGRLESFFKPV 297 (332)
Q Consensus 285 ~~Q~~l~~ff~~~ 297 (332)
....+|++||...
T Consensus 3 sgMKSI~sFF~~k 15 (23)
T 3p87_G 3 SGMKSIDTFFGVK 15 (26)
T ss_pred ccchhHHHHhccc
Confidence 4567899999853
No 96
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.47 E-value=45 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEKI 278 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~l 278 (332)
.+|.+.|..++ ++||+.+++..+|+.-
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~t 33 (64)
T 1whc_A 7 GAELTALESLI--EMGFPRGRAEKALALT 33 (64)
T ss_dssp CCCCCHHHHHH--TTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 45667777775 7999999988888643
No 97
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=23.46 E-value=33 Score=29.39 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.8
Q ss_pred CCCccHHHHHHHHH
Q 020008 187 IRGIGGQTALKLIR 200 (332)
Q Consensus 187 ipgiG~ktA~~li~ 200 (332)
+||||++||--++.
T Consensus 114 l~GIG~~tA~~il~ 127 (211)
T 2abk_A 114 LPGVGRKTANVVLN 127 (211)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 79999999877665
No 98
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.35 E-value=87 Score=22.86 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
.+|.+.|..++ ++||+.+++..+|..
T Consensus 27 ~~~e~~i~~L~--~MGF~~~~a~~AL~~ 52 (83)
T 2dai_A 27 RVDEAALRQLT--EMGFPENRATKALQL 52 (83)
T ss_dssp SCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 47888888876 799999999988864
No 99
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=23.03 E-value=41 Score=29.09 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCEEec-----------ccchHHHHHHHHHcCC
Q 020008 88 DDCKRLLKLMGVPVVEA-----------PSEAEAQCAALCKSGQ 120 (332)
Q Consensus 88 ~~~~~lL~~~Gi~~i~a-----------p~EADaq~A~L~~~g~ 120 (332)
..-.+.|+.+|+||-.. ..|+||.+|||..-|.
T Consensus 154 ~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 154 AKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp HHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 33446777789999433 4599999999988664
No 100
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=22.92 E-value=1.1e+02 Score=26.79 Aligned_cols=107 Identities=14% Similarity=0.255 Sum_probs=51.8
Q ss_pred HHHHcCCCHHHHHHHH----HHhCCCCCCCC---------CCccHHHHHHHHHHcC-----CHHHHHHHHHhhcCCCCCC
Q 020008 161 ILEELNLTMDQFIDLC----ILSGCDYCDSI---------RGIGGQTALKLIRQHG-----SIETILENINRERYQIPED 222 (332)
Q Consensus 161 v~~~~gl~~~q~id~~----~L~G~Dy~~~i---------pgiG~ktA~~li~~~~-----sle~il~~~~~~~~~~~~~ 222 (332)
++..+|++++++..+. .++++|... + -|+......+++.+++ +++++..+++-.... -.
T Consensus 47 fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~--lG 123 (270)
T 3m66_A 47 FLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKE--LE 123 (270)
T ss_dssp HHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHH--HC
T ss_pred HHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHH--hC
Confidence 4456677777666553 233333322 2 1555556666666665 344443333322000 12
Q ss_pred CchHHHHHHh-CCCCcCCccchhccccCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 020008 223 WPYQEARRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278 (332)
Q Consensus 223 ~~~~~~~~~f-~~p~V~~~~~~~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l 278 (332)
++..++..+. .+|.+-.. +.+ ....-.+|+..++||+.+.|...+.+.
T Consensus 124 ~~~~~i~~ll~~~P~il~~-s~e-------~~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 124 LSVKKTRDLVVRLPRLLTG-SLE-------PVKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp CCHHHHHHHHHHSGGGGTS-CSH-------HHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCCcceee-chH-------HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 2334444443 35544311 111 123344555578999988888777663
No 101
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.86 E-value=1e+02 Score=21.98 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 249 SAPDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 249 ~~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
..++.+.|..++ ++||+++.+..+|+.
T Consensus 26 ~~~~ee~I~~L~--eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 26 VAASEEQIQKLV--AMGFDRTQVEVALAA 52 (73)
T ss_dssp SCCCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CcccHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 345566666654 899999999998875
No 102
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.71 E-value=88 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 250 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
.+|.+.|..++ .+||+.+++.++|..
T Consensus 27 ~~~e~~v~~L~--~MGF~~~~a~~AL~~ 52 (84)
T 1vek_A 27 VANEEIVAQLV--SMGFSQLHCQKAAIN 52 (84)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 56888887776 799999999888764
No 103
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=22.41 E-value=37 Score=29.62 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.2
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.|||||++||--++-
T Consensus 143 ~l~GIG~~TA~~ill 157 (228)
T 3s6i_A 143 QIKGIGRWTVEMLLI 157 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999877664
No 104
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=21.77 E-value=38 Score=30.68 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.+|||||+||--++.
T Consensus 215 ~lpGIG~~TA~~ill 229 (290)
T 3i0w_A 215 KFMGVGPQVADCIML 229 (290)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999977664
No 105
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=21.64 E-value=39 Score=29.36 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=11.9
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.+||||++||--++.
T Consensus 150 ~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 150 QLPGIGRWTAEMFLL 164 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 379999999876654
No 106
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=21.56 E-value=2.5e+02 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 252 DEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 252 d~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
+.+.+..+. ++||+.+.+.++|..
T Consensus 76 ~~~~v~~L~--eMGF~~~~a~~AL~~ 99 (118)
T 4ae4_A 76 FLQLMSKFK--EMGFELKDIKEVLLL 99 (118)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHHHH
T ss_pred CHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 456666664 999999999998864
No 107
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.53 E-value=49 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHH
Q 020008 251 PDEEGLINFLVSENGFNSDRVTKAIEK 277 (332)
Q Consensus 251 pd~~~l~~fl~~~~~f~~~rv~~~~~~ 277 (332)
||.+.|..++ ++||+++++..+|..
T Consensus 18 ~~e~~i~~L~--~MGF~~~~a~~AL~~ 42 (64)
T 2cpw_A 18 KHGSALDVLL--SMGFPRARAQKALAS 42 (64)
T ss_dssp SCCCHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 6777777775 799999998888864
No 108
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=21.29 E-value=74 Score=27.13 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccc
Q 020008 88 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 132 (332)
Q Consensus 88 ~~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l 132 (332)
+.+.+.++..|+++..-.-.-.+.+.+|...| ||+|+|++.+.+
T Consensus 176 ~~~v~~~~~~G~~v~~wtvn~~~~~~~l~~~G-vdgI~TD~p~~~ 219 (224)
T 1vd6_A 176 EEAVAGWRKRGLFVVAWTVNEEGEARRLLALG-LDGLIGDRPEVL 219 (224)
T ss_dssp HHHHHHHHHTTCEEEEECCCCHHHHHHHHHTT-CSEEEESCHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcC-CCEEEcCCHHHH
Confidence 34455566678777665543334555666666 667777766654
No 109
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=21.19 E-value=84 Score=27.48 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCEEecccchHHHHHHHHHcCCeEEEecCCCccc
Q 020008 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 132 (332)
Q Consensus 89 ~~~~lL~~~Gi~~i~ap~EADaq~A~L~~~g~v~~V~S~DsD~l 132 (332)
.+.+.++..|++++.---.-.+.+.+|...| ||+|+|++.+.+
T Consensus 227 ~~v~~~~~~Gl~v~~wTvn~~~~~~~l~~~G-vdgIiTD~P~~~ 269 (272)
T 3ch0_A 227 KDIDAAHKLGMRVIPWTVNTKEEIETLISLG-VDGIITDYPDLF 269 (272)
T ss_dssp HHHHHHHHTTCEECCBCCCSHHHHHHHHHHT-CSEEEESCGGGG
T ss_pred HHHHHHHHcCCEEEEeccCCHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 3445556677766554432233445555555 667777766654
No 110
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=20.91 E-value=42 Score=29.43 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.0
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.|||||++||--++-
T Consensus 154 ~l~GIG~~TA~~ill 168 (232)
T 4b21_A 154 KIKGVKRWTIEMYSI 168 (232)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999876654
No 111
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=20.87 E-value=1.2e+02 Score=24.30 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.2
Q ss_pred HHHHHH-cCCCEEec---ccchHHHHHHHHHcCCeEEEe
Q 020008 91 KRLLKL-MGVPVVEA---PSEAEAQCAALCKSGQVYAVA 125 (332)
Q Consensus 91 ~~lL~~-~Gi~~i~a---p~EADaq~A~L~~~g~v~~V~ 125 (332)
-++|+. .|+++-.. |-|++.+++.+.++|.++.||
T Consensus 41 a~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVI 79 (134)
T 2xw6_A 41 GRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVI 79 (134)
T ss_dssp HHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEE
Confidence 345555 89988554 228999999999999999886
No 112
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=20.80 E-value=55 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHcC
Q 020008 187 IRGIGGQTALKLIRQHG 203 (332)
Q Consensus 187 ipgiG~ktA~~li~~~~ 203 (332)
|.|||..+|..++++.+
T Consensus 35 I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 35 IKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHcC
Confidence 67999999999999865
No 113
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=20.14 E-value=43 Score=30.04 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=12.0
Q ss_pred CCCCccHHHHHHHHH
Q 020008 186 SIRGIGGQTALKLIR 200 (332)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (332)
.+||||++||--++.
T Consensus 211 ~lpGIG~~TA~~ill 225 (282)
T 1mpg_A 211 TFPGIGRWTANYFAL 225 (282)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 479999999877654
No 114
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=20.10 E-value=43 Score=30.31 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHcCCCHH---HHHHHHHHhCCCCCC--------------CCCCccHHHHHHHHH
Q 020008 162 LEELNLTMD---QFIDLCILSGCDYCD--------------SIRGIGGQTALKLIR 200 (332)
Q Consensus 162 ~~~~gl~~~---q~id~~~L~G~Dy~~--------------~ipgiG~ktA~~li~ 200 (332)
+..+|+... .+..++-. | |+.. .|||||++||--++.
T Consensus 175 Lr~~G~~~rKa~~i~~~A~~-g-~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill 228 (295)
T 2jhn_A 175 LRECGLSRRKAELIVEIAKE-E-NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLS 228 (295)
T ss_dssp HHHTTCCHHHHHHHHHHHTC-S-SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHC-C-CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHH
Confidence 356788753 45556554 4 4431 369999999877654
Done!