Your job contains 1 sequence.
>020010
MMINTIEVAVPIHVNIKPCLPINPFKSISIIKPGKRMTKTEVVEAKTTVISGSFDRTVGR
QLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVI
AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV
KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK
HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA
VRTVGRDYAQEALTKHADYLRRNYEVLALRRY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020010
(332 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036293 - symbol:AT1G34380 species:3702 "Arabi... 1010 6.9e-102 1
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 233 1.1e-17 1
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 230 4.3e-17 1
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 225 2.7e-16 1
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 222 7.8e-16 1
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 218 2.7e-15 1
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 218 2.7e-15 1
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 213 1.0e-14 1
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 213 1.0e-14 1
TIGR_CMR|CBU_1795 - symbol:CBU_1795 "DNA polymerase I" sp... 210 2.7e-14 1
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 209 3.7e-14 1
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 207 1.0e-13 2
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 205 1.2e-13 1
TIGR_CMR|APH_0001 - symbol:APH_0001 "DNA polymerase I" sp... 199 5.3e-13 1
TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi... 192 1.1e-12 1
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 195 1.5e-12 1
TIGR_CMR|BA_1606 - symbol:BA_1606 "5'-3' exonuclease fami... 184 1.9e-12 1
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 190 6.8e-12 1
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 187 1.5e-11 1
DICTYBASE|DDB_G0267464 - symbol:polA "mitochondrial DNA p... 183 7.1e-11 1
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 177 2.2e-10 1
UNIPROTKB|Q10699 - symbol:MT2151 "5'-3' exonuclease" spec... 159 3.3e-09 1
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 157 3.9e-08 1
UNIPROTKB|P38506 - symbol:ygdG "YgdG" species:83333 "Esch... 145 6.3e-08 1
TIGR_CMR|SO_1549 - symbol:SO_1549 "exodeoxyribonuclease I... 138 5.1e-07 1
UNIPROTKB|Q47YA8 - symbol:xni "Protein Xni" species:16787... 139 5.5e-07 1
TIGR_CMR|CPS_3538 - symbol:CPS_3538 "exodeoxyribonuclease... 139 5.5e-07 1
UNIPROTKB|Q9KTK4 - symbol:xni "Protein Xni" species:24327... 130 4.3e-06 1
TIGR_CMR|VC_0898 - symbol:VC_0898 "exodeoxyribonuclease I... 130 4.3e-06 1
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 134 1.3e-05 1
>TAIR|locus:2036293 [details] [associations]
symbol:AT1G34380 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0008152
GO:GO:0008409 SUPFAM:SSF47807 UniGene:At.39746 UniGene:At.64018
EMBL:BT015335 EMBL:BT015711 IPI:IPI00519657 RefSeq:NP_001117409.1
ProteinModelPortal:Q66GR7 STRING:Q66GR7 EnsemblPlants:AT1G34380.2
GeneID:840340 KEGG:ath:AT1G34380 TAIR:At1g34380
HOGENOM:HOG000006229 InParanoid:Q66GR7 OMA:CIMGDEV PhylomeDB:Q66GR7
ProtClustDB:CLSN2925451 Genevestigator:Q66GR7 Uniprot:Q66GR7
Length = 347
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 200/307 (65%), Positives = 236/307 (76%)
Query: 26 KSISIIKPGKRMXXXXXXXXXXXXIS-GSFDRTVGRQLLGKADFCGNGLEKTKSKKRVFF 84
KSI +P + S +F RT Q+L K CGN E K KRVFF
Sbjct: 18 KSIDKTQPSRTKWVSSSSSSFSSHSSVETFHRTGNVQVLQKDVLCGNNEEIRKKNKRVFF 77
Query: 85 LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRR 144
LDV+PLCYEG++PS Q+FG W+SLFF QVS DPVIAV DGE G + RR+LLPSYKAHR+
Sbjct: 78 LDVSPLCYEGNKPSSQAFGHWISLFFSQVSLTDPVIAVIDGEEGNQRRRELLPSYKAHRK 137
Query: 145 KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYR 204
R+S+ R HQF+ +VL KCNVPVV+IEGHEADDV+ATL+ Q +Q+GYR
Sbjct: 138 S-----PNHGRYSK----RPHQFVDEVLRKCNVPVVRIEGHEADDVVATLMEQAVQRGYR 188
Query: 205 AVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
AV+ASPDKDFKQLISE+VQ+V+PL DL RWSFYTLKHY AQYNCDP S+LS RCI+GD+V
Sbjct: 189 AVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIMGDEV 248
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNY 324
DGVPGIQH+VP FGRKTA+KL++KHGSLE+LL+AAAVRTVGR YAQEALTK+ADYLRRNY
Sbjct: 249 DGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYLRRNY 308
Query: 325 EVLALRR 331
+VLAL R
Sbjct: 309 QVLALNR 315
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 233 (87.1 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 71/214 (33%), Positives = 108/214 (50%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + F+ G++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRS------STPDEFA-GQI----DITKEVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR G+ +AL + + RN E+ L R
Sbjct: 232 VDAVR--GK--VGDALRANLASVVRNRELTDLVR 261
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 230 (86.0 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 64/203 (31%), Positives = 111/203 (54%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
H + VFD +G T R ++ P YKA+R L ++G I +++
Sbjct: 51 HPGRLAVVFD-KGRTTFRTEIYPDYKANRAAMPDDLVP-------QIGP----IKEMVRA 98
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
++PV+++EG+EADD+I T+ + ++G AVV + DKD Q++S+ ++L+ ++D R
Sbjct: 99 FSIPVLELEGYEADDIIGTIARRCEEQGLEAVVVTGDKDLMQIVSDRIRLLDTMKD--RV 156
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
S + + ++ P + + + GD D +PG VPG G KTA KL+++ GSL+
Sbjct: 157 S--GIPEVVERFGVGPGQVIDILGLAGDTSDNIPG----VPGIGEKTATKLIQEFGSLDA 210
Query: 295 LLNAAA-VR-TVG---RDYAQEA 312
LL A V+ G R++A++A
Sbjct: 211 LLERAGEVKGKTGERLREFAEQA 233
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 225 (84.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 56/177 (31%), Positives = 94/177 (53%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 222 (83.2 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 67/223 (30%), Positives = 107/223 (47%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R L YKAHR L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDLYQEYKAHRPPMPDDL-------RSQIEPLHR-IIRA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ + ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARRASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ + A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPEEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLL----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ NLL + + G + +AD LR +YE+ ++
Sbjct: 211 VANLLAEPEKVSELAFRGSKTMAAKIIDNADMLRLSYELATIK 253
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 218 (81.8 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 68/221 (30%), Positives = 111/221 (50%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ ++ +G
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ-VIRAMG-- 103
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 104 -LPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIK 253
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 218 (81.8 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 68/221 (30%), Positives = 111/221 (50%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ ++ +G
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ-VIRAMG-- 103
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 104 -LPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIK 253
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 213 (80.0 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 68/253 (26%), Positives = 122/253 (48%)
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP-VIAV-FDGEGGTEHRRQLLPS 138
R FF + PL P+ +G +L++ F + P +AV FD T R + +
Sbjct: 15 RAFFA-LPPLKTTKGEPTGAVYG-FLTMLFRVIKDEKPEYLAVAFDISRKT-FRTEQFTA 71
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YK HR++ +L +F+ + +VL NVP ++++G+EADD+I L
Sbjct: 72 YKGHRKEAPDELVP--QFA---------LVREVLKVLNVPYIELDGYEADDIIGHLSRAF 120
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
+G+ V+ + D+D QL+ E + + + + L + Y P + ++
Sbjct: 121 AGQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKG 180
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
++GD D +PG VPG G KTAL L+K +GS+E +L A + + +E L +H +
Sbjct: 181 LMGDPSDNIPG----VPGIGEKTALDLIKTYGSVEEVL---AHKDELKPKLREKLAEHEN 233
Query: 319 YLRRNYEVLALRR 331
+ + ++ + R
Sbjct: 234 LAKISKQLATILR 246
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 213 (80.0 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 68/253 (26%), Positives = 122/253 (48%)
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP-VIAV-FDGEGGTEHRRQLLPS 138
R FF + PL P+ +G +L++ F + P +AV FD T R + +
Sbjct: 15 RAFFA-LPPLKTTKGEPTGAVYG-FLTMLFRVIKDEKPEYLAVAFDISRKT-FRTEQFTA 71
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YK HR++ +L +F+ + +VL NVP ++++G+EADD+I L
Sbjct: 72 YKGHRKEAPDELVP--QFA---------LVREVLKVLNVPYIELDGYEADDIIGHLSRAF 120
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
+G+ V+ + D+D QL+ E + + + + L + Y P + ++
Sbjct: 121 AGQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKG 180
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
++GD D +PG VPG G KTAL L+K +GS+E +L A + + +E L +H +
Sbjct: 181 LMGDPSDNIPG----VPGIGEKTALDLIKTYGSVEEVL---AHKDELKPKLREKLAEHEN 233
Query: 319 YLRRNYEVLALRR 331
+ + ++ + R
Sbjct: 234 LAKISKQLATILR 246
>TIGR_CMR|CBU_1795 [details] [associations]
symbol:CBU_1795 "DNA polymerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_820774.2 ProteinModelPortal:Q83AT5 PRIDE:Q83AT5
GeneID:1209706 KEGG:cbu:CBU_1795 PATRIC:17932329
BioCyc:CBUR227377:GJ7S-1767-MONOMER Uniprot:Q83AT5
Length = 902
Score = 210 (79.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 62/183 (33%), Positives = 94/183 (51%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V VFD +G T R L +YKA+R + +L R ++ + I+ LG
Sbjct: 63 DYVAVVFDPKGKT-FRHDLYHTYKANRIEMPNEL-------RSQIKPLFE-IIRALG--- 110
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
P++ EG+EADDVIATL + +KG +V++ DKD Q+++E V LV + D
Sbjct: 111 FPLIIKEGYEADDVIATLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTD----RL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
K + ++ P + + GD D +PG VP G KTA+K L ++ S+ENL+
Sbjct: 167 LNSKGVLEKFGVPPEKIIDYLTLTGDTTDNIPG----VPKVGPKTAVKWLSQYDSVENLI 222
Query: 297 NAA 299
A
Sbjct: 223 KHA 225
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 209 (78.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 60/197 (30%), Positives = 105/197 (53%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+IA+FD +G T R + P YKA+R L R ++ H+ I+ +G +P
Sbjct: 68 IIAIFDAKGKT-FRNDMFPEYKANRPPMPDDL-------RTQIAPIHE-IITAMG---LP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ I G EADDVI TL Q + G V+++ DKD QL+++ V+L+ + D++
Sbjct: 116 LLVIPGVEADDVIGTLAKQADELGIETVISTGDKDMAQLVTKHVRLINTMTDVEM----D 171
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ ++ P + ++GD VD +PG+ P KTA+K L +HG+++ ++ N
Sbjct: 172 VAGVSEKFGVRPDQIIDYLALMGDKVDNIPGVVKCGP----KTAVKWLAEHGTMQEVIAN 227
Query: 298 AAAVR-TVGRDYAQEAL 313
A V+ +G + ++AL
Sbjct: 228 ADKVKGKIGENL-RDAL 243
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 207 (77.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 62/202 (30%), Positives = 98/202 (48%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD +G T R ++ +YKA R +L + ++GR Q I+D N+PV +
Sbjct: 60 FDRKGPT-FRHEMFKAYKAQRPPMPDELVS-------QLGRVRQ-IVDAF---NMPVYEQ 107
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP--LQDLDRWSFYTLK 240
G EADDV+ TL + G ++AS D D QL+ D++++ P S Y
Sbjct: 108 SGFEADDVLGTLATRAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEV 167
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAA 299
A+Y P + ++GD D +PG VPG G KTA KL++++G +E++ N
Sbjct: 168 AVRAKYGLGPEHIADYKALMGDPSDNIPG----VPGIGPKTAQKLIEEYGGIEDIYKNLD 223
Query: 300 AVRTVGRDYAQEALTKHADYLR 321
+ G Q+ L +A+ R
Sbjct: 224 KISPPG---LQKKLADNAEVAR 242
Score = 38 (18.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 118 PVIAVFDGEGGTEHRRQLLP 137
PVI +FDG +LP
Sbjct: 4 PVIVLFDGTNLVHRAYHVLP 23
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 59/180 (32%), Positives = 88/180 (48%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD +G R L YKA+R L +R + F N+P +
Sbjct: 67 IFD-KGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRAA---TEAF--------NIPCKE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQL--VMPLQDLDRWSFYTL 239
+EG+EADD+IATL Q G R + S DKD QL+ + V++ M + +DR +
Sbjct: 115 LEGYEADDIIATLSNQARDAGGRVTIVSSDKDLMQLVGDGVEMFDAMKNKRIDRDGVFE- 173
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ P + ++ + GD VD VPG PG G KTA L+ ++GSLE+LL+ A
Sbjct: 174 -----KFGVFPDRVVDVQALAGDSVDNVPG----APGIGVKTAALLINEYGSLEDLLDRA 224
>TIGR_CMR|APH_0001 [details] [associations]
symbol:APH_0001 "DNA polymerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_504640.1 ProteinModelPortal:Q2GLW1 STRING:Q2GLW1
GeneID:3930741 KEGG:aph:APH_0001 PATRIC:20948540
BioCyc:APHA212042:GHPM-43-MONOMER Uniprot:Q2GLW1
Length = 853
Score = 199 (75.1 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 62/214 (28%), Positives = 103/214 (48%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD ++ VFD G R + YK +R K L+ R V F
Sbjct: 53 ADYLVVVFDS-GSKNFRHTMYSEYKTNRPKAPEDLSLQCAPLREAV---EAF-------- 100
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
N+ ++ +EADDVIATL + + S DKD QL++++VQ+ P++
Sbjct: 101 NIVSEEVLNYEADDVIATLCTKYASSNVGVRILSADKDLLQLLNDNVQVYDPIKS----R 156
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ T ++ + ++ L + GD D +PG VP G KTA KL+ + GSL+N+
Sbjct: 157 YLTNEYVLEKFGVSSDKLLDAMALTGDASDNIPG----VPSIGVKTAAKLINEFGSLDNV 212
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
LN+ V V + ++ LT++AD + ++++L
Sbjct: 213 LNS--VEQVAQKKCRDMLTEYADRAILSRDLISL 244
>TAIR|locus:2083775 [details] [associations]
symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
Uniprot:A8MQG8
Length = 448
Score = 192 (72.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 61/235 (25%), Positives = 114/235 (48%)
Query: 106 LSLFFDQVSHADPVIAV-FDGEG---GTEHRRQLLPSYKAHR-RKFLRQLTASQRFSR-- 158
LSL D + +AV FD +G GT Y++ + F L + + +R
Sbjct: 161 LSLLIDVLKFLPSHVAVVFDHDGVPYGTTSNSST--GYRSAKGMNFRHTLYPAYKSNRPP 218
Query: 159 --GRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQ 216
+ + Q++ + ++ V+++ G EADDVI TL + + G++ V SPDKDF Q
Sbjct: 219 TPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQ 278
Query: 217 LISEDVQLVMPLQDLDRWSFYTLKHYIAQY-NCDPHSELSLRCIVGDDVDGVPGIQHVVP 275
++S ++L+ + + ++ + ++ N +P + + + GD D +PG+
Sbjct: 279 ILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVD---- 334
Query: 276 GFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
G G A++L+ + G+LENLL + V + +E+L AD + ++ LR
Sbjct: 335 GIGNVHAVELISRFGTLENLLQS--VDEIKEGKIKESLIASADQAILSKKLALLR 387
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 195 (73.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 65/212 (30%), Positives = 102/212 (48%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ D G + R + +YKA+R LT R V DVL N+
Sbjct: 52 LVVALD-HGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECV--------DVL---NLN 99
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++IEG EADDVIATLV + + + + S DKD QL++E+V ++ P+++
Sbjct: 100 PLEIEGFEADDVIATLVRKFSKSDLKIKILSTDKDLMQLVNENVHVINPIKN----RIIG 155
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL-LN 297
+ ++ P +VGD D +PG VPG G KTA KLL G++EN LN
Sbjct: 156 VNEVKEKFGVFPTQMTDFLSLVGDTSDNIPG----VPGIGVKTAAKLLNTFGAIENFRLN 211
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +E+L +H D L + +++L
Sbjct: 212 EISPARI-----KESLLRHHDQLTLSKRLVSL 238
>TIGR_CMR|BA_1606 [details] [associations]
symbol:BA_1606 "5'-3' exonuclease family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0006308 "DNA
catabolic process" evidence=ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISS] InterPro:IPR002421 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 SMART:SM00475 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0008152 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000040581 OMA:WRVDLIP HSSP:P19821
RefSeq:NP_844054.1 RefSeq:YP_018229.1 RefSeq:YP_027758.1
ProteinModelPortal:Q81SP1 DNASU:1086492
EnsemblBacteria:EBBACT00000013235 EnsemblBacteria:EBBACT00000016802
EnsemblBacteria:EBBACT00000019831 GeneID:1086492 GeneID:2819739
GeneID:2852182 KEGG:ban:BA_1606 KEGG:bar:GBAA_1606 KEGG:bat:BAS1489
ProtClustDB:CLSK2485152 BioCyc:BANT260799:GJAJ-1563-MONOMER
BioCyc:BANT261594:GJ7F-1628-MONOMER Uniprot:Q81SP1
Length = 288
Score = 184 (69.8 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 49/189 (25%), Positives = 95/189 (50%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ +D G T R + +YKA+R +L +F + ++ K +VP
Sbjct: 57 IVTCWD-MGSTTFRTESFSNYKANRAAPPEELIP--QFD---------LVQEMTAKLSVP 104
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ ++G+EADD I TL Q + + + D D QL+ ++V +++ + + + +YT
Sbjct: 105 VIGMKGYEADDCIGTLAKQYCNEA-EVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + + +P + + +GD D PG++ G G KTA KL+++HG++ +L N
Sbjct: 164 PEKIMEEKGVEPWQIVHAKAFMGDTSDNYPGVK----GIGEKTAYKLIQEHGTVATVLEN 219
Query: 298 AAAVRTVGR 306
A++ R
Sbjct: 220 VASLTKAQR 228
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 190 (71.9 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 61/209 (29%), Positives = 98/209 (46%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD G T R ++ P YKA+R +L R R + ++
Sbjct: 69 IFDASGDT-FRNEIYPLYKANRSDPPEELVPQFPLVR-RAAVAFA----------AHAIE 116
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT KG R + S DKD QLI++ V ++ P+++
Sbjct: 117 QTGFEADDLIATYARLAEAKGARVTIVSSDKDLMQLITDKVLMLDPMKN----KLLGRDD 172
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + ++ + GD VD VPG PG G KTA +LL ++G++E LL A
Sbjct: 173 VIEKFGVGPEGVVDVQSLSGDSVDNVPG----APGIGIKTAAQLLGEYGTVEALLERAG- 227
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ + +E L AD +R + +++ L+
Sbjct: 228 -EIKQPKRRETLINFADQVRVSKQLVQLK 255
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 187 (70.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 68/243 (27%), Positives = 111/243 (45%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIA--VFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P A VFD +G T R +L YK+HR
Sbjct: 27 PLTNSAGEPTGAMYGV-LNMLRSLIMQYKPTHAAVVFDAKGKT-FRDELFEHYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H + +G +P++ + G EADDVI TL + + G +
Sbjct: 85 PDDL-------RAQIEPLHAMV-KAMG---LPLLAVSGVEADDVIGTLAREAEKAGRPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL++ ++ L+ + + + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVTPNITLINTMTN----TILGPEEVVNKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEV 326
+PG VPG G KTA LL+ G L+ L A + G + + A T A L +N EV
Sbjct: 190 IPG----VPGVGEKTAQALLQGLGGLDTLY-AEPEKIAGLSF-RGAKTMAAK-LEQNKEV 242
Query: 327 LAL 329
L
Sbjct: 243 AYL 245
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 183 (69.5 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 66/263 (25%), Positives = 119/263 (45%)
Query: 90 LCYEGSRPS-LQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLR 148
L EG + L F R + D++ D ++ FD +GG+ RR L P YK++R
Sbjct: 293 LTNEGMNVNVLYGFMRSMLKVIDELKPIDSIVVCFDPKGGSSFRRDLYPEYKSNRPPTPP 352
Query: 149 QLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV-- 206
+L Q+ I +V NV K++G+E DD++AT Q+G + +
Sbjct: 353 ELL--QQLL---------LIPEVTDSINVAFTKVDGYECDDLLATYSKLATQEGNKFIEG 401
Query: 207 --------------------VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
+ + DKD QL++++V + R S + I ++
Sbjct: 402 NDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVY----STRRGSMVDKQGVIDKF 457
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGR 306
+P+ ++ + ++GD VD +PGI P G KTA ++KK G+L +++ + + +
Sbjct: 458 GFEPNKFVTFQSLIGDKVDNIPGI----PRIGEKTATDIIKKFGNLNSIIEN--IDQLPQ 511
Query: 307 DYAQEALTKHADYLRRNYEVLAL 329
+ E + D LR +Y++ L
Sbjct: 512 KFI-EPIRSSIDQLRISYQLAKL 533
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 177 (67.4 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 50/156 (32%), Positives = 83/156 (53%)
Query: 166 QFIL--DVLGKCNVPVVKIEGHEADDVIATLVGQVLQ-KGYRAVVASPDKDFKQLISEDV 222
QF L + + N+ ++ G+EADDVIATL + + +G + V + DKD QL+ ++
Sbjct: 86 QFSLLREAVNAFNIASEEVVGYEADDVIATLSKKYCKLQGVKVTVVTSDKDLLQLLKYNI 145
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
+ P+++ + + +++ + L + GD D VPGI PG G KTA
Sbjct: 146 CIFDPIKN----KYIEEEDVQSKFGISSNQLLDFLSLTGDASDNVPGI----PGIGVKTA 197
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
KLL GSL+NLL V V + +E++T+++D
Sbjct: 198 AKLLNDFGSLDNLL--LHVHEVKTNKCRESITQYSD 231
Score = 133 (51.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 43/169 (25%), Positives = 79/169 (46%)
Query: 105 WLSLFFDQVS-HA-DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
++++F + H D ++ VFD G R + P YK +R K L +FS
Sbjct: 37 FINIFLKYIEKHVTDYLVVVFD-TGSKNFRHNIYPEYKGNRPKLPDDLIP--QFS----- 88
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQ-KGYRAVVASPDKDFKQLISED 221
+ + + N+ ++ G+EADDVIATL + + +G + V + DKD QL+ +
Sbjct: 89 ----LLREAVNAFNIASEEVVGYEADDVIATLSKKYCKLQGVKVTVVTSDKDLLQLLKYN 144
Query: 222 VQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGI 270
+ + P+++ + + +++ + L + GD D VPGI
Sbjct: 145 ICIFDPIKN----KYIEEEDVQSKFGISSNQLLDFLSLTGDASDNVPGI 189
>UNIPROTKB|Q10699 [details] [associations]
symbol:MT2151 "5'-3' exonuclease" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 SMART:SM00475 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 GO:GO:0006281 EMBL:BX842578 GO:GO:0090305
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 PIR:E70767
RefSeq:NP_216606.1 RefSeq:NP_336618.1 ProteinModelPortal:Q10699
SMR:Q10699 EnsemblBacteria:EBMYCT00000002777
EnsemblBacteria:EBMYCT00000070703 GeneID:887924 GeneID:924576
KEGG:mtc:MT2151 KEGG:mtu:Rv2090 PATRIC:18126492 TubercuList:Rv2090
HOGENOM:HOG000040581 OMA:WRVDLIP ProtClustDB:CLSK872003
Uniprot:Q10699
Length = 318
Score = 159 (61.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 58/204 (28%), Positives = 98/204 (48%)
Query: 130 EHRRQLLPSYKAHR-RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEAD 188
+ R L+PSYKAHR + + I+++L + + G EAD
Sbjct: 66 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD 125
Query: 189 DVIATLVGQVLQKGYRAVVASPDKDFKQLISED---VQLVMPLQDLDRWSFYTLKHYIAQ 245
DV+ TL + ++ +V S D+D Q++++D V+++ + L + + + +
Sbjct: 126 DVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAER 183
Query: 246 YNCDPH------SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
Y H +EL+L + GD DG+PG VPG G KTA LL +HGSL+ ++ AA
Sbjct: 184 YGLPAHRAGAAYAELAL--LRGDPSDGLPG----VPGVGEKTAATLLARHGSLDQIMAAA 237
Query: 300 AVR--TVGRDYAQEALTKHADYLR 321
R T+ + + L A Y++
Sbjct: 238 DDRKTTMAKGLRTKLLAASA-YIK 260
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 157 (60.3 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 61/218 (27%), Positives = 90/218 (41%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P VFD +GGT R L YKA+R L R +V H + +
Sbjct: 54 PFAVVFDAKGGT-FRDALYTDYKANRPSMPDDL-------RVQVDLLHACVKGM----GY 101
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P++ +EG EADDVI TL ++++ DKD QL+ + LV + S
Sbjct: 102 PLLCVEGVEADDVIGTLARSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTG----SAL 157
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS-----L 292
+ ++ P + ++GD VD +PG VPG G KTA+ LL G
Sbjct: 158 DVAGVKEKFGVGPEHIIDYLALMGDKVDNIPG----VPGVGEKTAVGLLVGVGGGIKELY 213
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
E L A + G L +H +YE+ ++
Sbjct: 214 ERLETVATLPIRGAKTLAAKLEEHRAMAFLSYELATIK 251
>UNIPROTKB|P38506 [details] [associations]
symbol:ygdG "YgdG" species:83333 "Escherichia coli K-12"
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 EMBL:U29581 GO:GO:0008152 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 EMBL:M27177 EMBL:L07763
HOGENOM:HOG000040580 KO:K01146 ProtClustDB:PRK09482 HAMAP:MF_01192
InterPro:IPR022895 PIR:B65062 RefSeq:NP_417278.4 RefSeq:YP_491006.1
ProteinModelPortal:P38506 SMR:P38506 DIP:DIP-11145N IntAct:P38506
EnsemblBacteria:EBESCT00000004871 EnsemblBacteria:EBESCT00000018316
GeneID:12930228 GeneID:947256 KEGG:ecj:Y75_p2735 KEGG:eco:b2798
PATRIC:32121012 EchoBASE:EB2275 EcoGene:EG12372
BioCyc:EcoCyc:EG12372-MONOMER BioCyc:ECOL316407:JW5446-MONOMER
Genevestigator:P38506 Uniprot:P38506
Length = 251
Score = 145 (56.1 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 60/196 (30%), Positives = 84/196 (42%)
Query: 111 DQ-VSHADPV--IAVFDGEGGTEH-RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQ 166
DQ + H+ P +AVFD E + R Q LP YKA R +L R +
Sbjct: 34 DQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQR-- 91
Query: 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM 226
VP G+EADD+ ATL +V Q G++A + S DK + QL+S +++
Sbjct: 92 ---------GVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRD 142
Query: 227 PLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLL 286
Q RW ++ P + G VPG V G G K+A +LL
Sbjct: 143 YFQK--RW--LDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPG----VAGIGPKSATQLL 194
Query: 287 KKHGSLENLL-NAAAV 301
+ SLE + N AV
Sbjct: 195 VEFQSLEGIYENLDAV 210
>TIGR_CMR|SO_1549 [details] [associations]
symbol:SO_1549 "exodeoxyribonuclease IX" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0016895
"exodeoxyribonuclease activity, producing 5'-phosphomonoesters"
evidence=ISS] InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 GO:GO:0003677 GO:GO:0006281
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000040580 KO:K01146
ProtClustDB:PRK09482 HAMAP:MF_01192 InterPro:IPR022895
RefSeq:NP_717163.2 HSSP:P19821 ProteinModelPortal:Q8EGP9
GeneID:1169355 KEGG:son:SO_1549 PATRIC:23522738 OMA:YELFRAH
Uniprot:Q8EGP9
Length = 261
Score = 138 (53.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 58/220 (26%), Positives = 94/220 (42%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
++ H V V+DG+ R+QL P YK R+ L A G +
Sbjct: 42 RIHHPTHVAVVWDGDE-ISWRKQLYPDYKKGRKPMPEPLAA------GLIALQEHLQ--- 91
Query: 172 LGKCNVPVVKI-EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
N+ + I EADDVIATL + + A++ S DK F QL + D
Sbjct: 92 ----NLQIQSIYAAAEADDVIATLATKTAKAQGEALIVSTDKGFSQLNHPRISQ----WD 143
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + + D L L + GD + +PGI PG G K+A +LL+
Sbjct: 144 HFNQQYLNIAELEQKLGVDRSQFLDLMALAGDSGNKIPGI----PGIGPKSAAELLRTFR 199
Query: 291 SLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+L L ++ + +G A++ L + D R +Y+++ L+
Sbjct: 200 TLATLFSS--LPNLGAKQAKK-LAEGRDMARLSYKLVQLQ 236
>UNIPROTKB|Q47YA8 [details] [associations]
symbol:xni "Protein Xni" species:167879 "Colwellia
psychrerythraea 34H" [GO:0016895 "exodeoxyribonuclease activity,
producing 5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 139 (54.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 56/220 (25%), Positives = 100/220 (45%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q +HA + VFD + R QL YK R+K L A++ I D
Sbjct: 64 QPTHA---LTVFDSQEPC-WRYQLFEGYKKGRKKMPDHL-ANKLID----------IQDA 108
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
+ V + + EADD+IATL ++ G + + S DK F L+S ++ + D
Sbjct: 109 FMEQGVDSLTSDEDEADDLIATLAVKMALHGQKVTIISTDKGFLPLLSPNIHIY----DY 164
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ +H ++++ + + GD+ + + G+ G G+ TA KLL ++GS
Sbjct: 165 FNRRYLDEEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVS----GIGQVTAAKLLNQYGS 220
Query: 292 LENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
L+ +L A ++ D E LT+ + + ++L L++
Sbjct: 221 LKAILEATDLK----DSLAEKLTQSLEQMDLARKLLTLKQ 256
>TIGR_CMR|CPS_3538 [details] [associations]
symbol:CPS_3538 "exodeoxyribonuclease IX" species:167879
"Colwellia psychrerythraea 34H" [GO:0006308 "DNA catabolic process"
evidence=ISS] [GO:0016895 "exodeoxyribonuclease activity, producing
5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 139 (54.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 56/220 (25%), Positives = 100/220 (45%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q +HA + VFD + R QL YK R+K L A++ I D
Sbjct: 64 QPTHA---LTVFDSQEPC-WRYQLFEGYKKGRKKMPDHL-ANKLID----------IQDA 108
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
+ V + + EADD+IATL ++ G + + S DK F L+S ++ + D
Sbjct: 109 FMEQGVDSLTSDEDEADDLIATLAVKMALHGQKVTIISTDKGFLPLLSPNIHIY----DY 164
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ +H ++++ + + GD+ + + G+ G G+ TA KLL ++GS
Sbjct: 165 FNRRYLDEEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVS----GIGQVTAAKLLNQYGS 220
Query: 292 LENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
L+ +L A ++ D E LT+ + + ++L L++
Sbjct: 221 LKAILEATDLK----DSLAEKLTQSLEQMDLARKLLTLKQ 256
>UNIPROTKB|Q9KTK4 [details] [associations]
symbol:xni "Protein Xni" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 62/222 (27%), Positives = 97/222 (43%)
Query: 113 VSHADP--VIAVFDGE-GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL 169
++ A P +IAVFD R +LLP+YKA+R+ L + I
Sbjct: 42 INEAQPSHMIAVFDHHLSDRGWRAELLPTYKANRKPMPDVLQ-----------QGIDAIQ 90
Query: 170 DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ 229
D + + + EG EADD++ATL +V + + S DK + QL+S +Q+ Q
Sbjct: 91 DAWWQLGIDSLLSEGDEADDLVATLACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQ 150
Query: 230 DLDRWSFYTLKHYIAQ-YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
RW + +IAQ + P + G +PG V G G K A ++L +
Sbjct: 151 Q--RWLD---EPFIAQEFGVTPAQLTDYWGLTGVSSSQIPG----VAGIGPKAAKEILNQ 201
Query: 289 HGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
S+E A A + Y ++ L H + R +V AL+
Sbjct: 202 FSSIEE---AYASPELPAKYRKK-LDPHIEMARICKQVSALK 239
>TIGR_CMR|VC_0898 [details] [associations]
symbol:VC_0898 "exodeoxyribonuclease IX" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 62/222 (27%), Positives = 97/222 (43%)
Query: 113 VSHADP--VIAVFDGE-GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL 169
++ A P +IAVFD R +LLP+YKA+R+ L + I
Sbjct: 42 INEAQPSHMIAVFDHHLSDRGWRAELLPTYKANRKPMPDVLQ-----------QGIDAIQ 90
Query: 170 DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ 229
D + + + EG EADD++ATL +V + + S DK + QL+S +Q+ Q
Sbjct: 91 DAWWQLGIDSLLSEGDEADDLVATLACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQ 150
Query: 230 DLDRWSFYTLKHYIAQ-YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
RW + +IAQ + P + G +PG V G G K A ++L +
Sbjct: 151 Q--RWLD---EPFIAQEFGVTPAQLTDYWGLTGVSSSQIPG----VAGIGPKAAKEILNQ 201
Query: 289 HGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
S+E A A + Y ++ L H + R +V AL+
Sbjct: 202 FSSIEE---AYASPELPAKYRKK-LDPHIEMARICKQVSALK 239
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 49/189 (25%), Positives = 81/189 (42%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D ++ D +G T R ++ P+YK +R +L ++++ K
Sbjct: 50 SDYIVFALDSKGKT-FRSEIDPNYKQNRTPPPPELL-----------EQIPICIEMIEKM 97
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED-VQLVMPLQDLDRW 234
V EG+EADD+IA+ V + + + DKD QLI + + P+ D
Sbjct: 98 GFISVSQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKND-- 155
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
Y + +Y P+ + GD D +PG++ G G K A LL + GS+E
Sbjct: 156 --YDEAACLEKYGVKPNQIRDFLALCGDSSDNIPGVK----GIGAKGAKTLLDEFGSIEG 209
Query: 295 LL-NAAAVR 302
+ N VR
Sbjct: 210 IYENLTLVR 218
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 332 320 0.00084 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 606 (64 KB)
Total size of DFA: 216 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.92u 0.13s 26.05t Elapsed: 00:00:01
Total cpu time: 25.93u 0.13s 26.06t Elapsed: 00:00:01
Start: Fri May 10 20:09:46 2013 End: Fri May 10 20:09:47 2013