BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020010
(332 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255571798|ref|XP_002526842.1| DNA polymerase I, putative [Ricinus communis]
gi|223533846|gb|EEF35577.1| DNA polymerase I, putative [Ricinus communis]
Length = 411
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/356 (66%), Positives = 274/356 (76%), Gaps = 26/356 (7%)
Query: 2 MINTIEVAVPIHVNIKPCLPINPFKSISI--IKPGKRMTKT---------EVVEAKTTVI 50
M+ TIEVA+P HV P L +P IS ++ KR TKT V A TT
Sbjct: 1 MLKTIEVAMPTHVQPNPSLSPSPCLPISTRNLRNKKRKTKTAYTYKTWKITAVSACTTSS 60
Query: 51 S-----GSFDRTVGRQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRW 105
S G F++TVG Q L + +G E+++ KKRVFFLDVNPLCY GS PSL SFG W
Sbjct: 61 SSSSSSGPFNQTVGGQFLSGCEISRSGEERSRRKKRVFFLDVNPLCYAGSTPSLHSFGYW 120
Query: 106 LSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRG------ 159
+SLFF QVS +DPVIAV DGEGG EHRR+LLPSYKAHRRKFL Q +A Q+FS+G
Sbjct: 121 ISLFFSQVSLSDPVIAVLDGEGGHEHRRKLLPSYKAHRRKFLSQSSAFQKFSKGQSSAFK 180
Query: 160 RVGRSH----QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFK 215
R + H + ++DVL KCNVPVVKIEGHEADDV+ATLV QVLQ+GY+AVVASPDKDFK
Sbjct: 181 RSSKGHVTRSEVVMDVLTKCNVPVVKIEGHEADDVVATLVEQVLQRGYKAVVASPDKDFK 240
Query: 216 QLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVP 275
QL+SEDVQ+V+P+ +L RWSFYT+KHYIAQYNCDP S+LSLRCI+GD+VDG+PGIQ V P
Sbjct: 241 QLVSEDVQIVLPVTELKRWSFYTIKHYIAQYNCDPCSDLSLRCIMGDEVDGIPGIQSVAP 300
Query: 276 GFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
GFGRKTALKLLKKHGSLENLLN AA+RTVG+ YAQ+ALTKHADYLRRNYEVLALRR
Sbjct: 301 GFGRKTALKLLKKHGSLENLLNVAAIRTVGKPYAQDALTKHADYLRRNYEVLALRR 356
>gi|118483131|gb|ABK93472.1| unknown [Populus trichocarpa]
Length = 375
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/332 (66%), Positives = 267/332 (80%), Gaps = 6/332 (1%)
Query: 2 MINTIEVAVPIHVNIKPCLPINPFKSISI--IKPGKRMTKTEVVEAKTTVISGSFDRTVG 59
M+ +E+A+P +++IKP L NP SIS ++ R T + A IS S T+G
Sbjct: 1 MMKMVEIAMPTNLHIKPTLTFNPSASISTWNLRKKPRETTKRKLGAVFASISSSSHDTIG 60
Query: 60 RQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV 119
+L +++ CG+ EK SKKRVFFLDVNPLCY GS PSL SF W+SLFF QVS DPV
Sbjct: 61 EELWPRSELCGSNKEKRASKKRVFFLDVNPLCYAGSTPSLHSFAHWISLFFSQVSLTDPV 120
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
IAV DG+GG+EHRRQLLPSYKAHRRKF R+ +A Q++ RSH ++DVL KCNVPV
Sbjct: 121 IAVLDGDGGSEHRRQLLPSYKAHRRKFSRKSSAPQKYP---AERSH-VVMDVLTKCNVPV 176
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
VKIEGHEADDV+ATL GQVLQ G++ V+ASPDKDFKQLISEDVQ+V+P+ +L+RWSFYTL
Sbjct: 177 VKIEGHEADDVVATLAGQVLQNGHKVVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTL 236
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
KHYI+QYNCDP S+LS RCI+GD+VDGVPGIQ+V PGFGRKTALKLLKKHGSL+NLL+AA
Sbjct: 237 KHYISQYNCDPCSDLSFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAA 296
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVRTVG+ YAQ+ALTKH+DYLRRNYE+LALRR
Sbjct: 297 AVRTVGKKYAQDALTKHSDYLRRNYEILALRR 328
>gi|224135903|ref|XP_002327332.1| predicted protein [Populus trichocarpa]
gi|222835702|gb|EEE74137.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/325 (67%), Positives = 261/325 (80%), Gaps = 6/325 (1%)
Query: 10 VPIHVNIKPCLPINPFKSISI--IKPGKRMTKTEVVEAKTTVISGSFDRTVGRQLLGKAD 67
+P +++IKP L NP SIS ++ R T + A IS S T+G +L +++
Sbjct: 1 MPTNLHIKPTLTFNPSASISTWNLRKKPRETTKRKLGAVFASISSSSHDTIGEELWPRSE 60
Query: 68 FCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEG 127
CG+ EK SKKRVFFLDVNPLCY GS PSL SF W+SLFF QVS DPVIAV DG+G
Sbjct: 61 LCGSNKEKRASKKRVFFLDVNPLCYAGSTPSLHSFAHWISLFFSQVSLTDPVIAVLDGDG 120
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
G+EHRRQLLPSYKAHRRKF R+ +A Q++ RSH ++DVL KCNVPVVKIEGHEA
Sbjct: 121 GSEHRRQLLPSYKAHRRKFSRKSSAPQKYP---AERSH-VVMDVLTKCNVPVVKIEGHEA 176
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DDV+ATL GQVLQ ++ V+ASPDKDFKQLISEDVQ+V+P+ +L+RWSFYTLKHYI+QYN
Sbjct: 177 DDVVATLAGQVLQNRHKVVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTLKHYISQYN 236
Query: 248 CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRD 307
CDP S+LS RCI+GD+VDGVPGIQ+V PGFGRKTALKLLKKHGSL+NLL+AAAVRTVG+
Sbjct: 237 CDPCSDLSFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAAAVRTVGKK 296
Query: 308 YAQEALTKHADYLRRNYEVLALRRY 332
YAQ+ALTKH+DYLRRNYE+LALRR+
Sbjct: 297 YAQDALTKHSDYLRRNYEILALRRW 321
>gi|356561357|ref|XP_003548949.1| PREDICTED: 5'-3' exonuclease-like [Glycine max]
Length = 368
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/333 (65%), Positives = 257/333 (77%), Gaps = 16/333 (4%)
Query: 3 INTIEVAVPIHVNIKPCLPINPFKSIS----IIKPGKRMTKTEVVEAKTTVISGSFDRTV 58
+ T+E+++ ++P P N ++S K +T T + + + + SFD+T
Sbjct: 1 MKTLEMSLLAGAYVQPRFPCNYNPTLSASCRTQKTATSLTVTTPKKTEKALFTESFDQTR 60
Query: 59 GRQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP 118
Q L + KKRVFFLDVNPLCYEGS+PSL S GRWLSLF +QVSH DP
Sbjct: 61 DAQPL------------PEKKKRVFFLDVNPLCYEGSKPSLHSLGRWLSLFLEQVSHTDP 108
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
VIAV DGE G+EHRR+LLPSYKAHRRKF R +++ QRFS G VGRS Q I DVLGKCNVP
Sbjct: 109 VIAVIDGERGSEHRRKLLPSYKAHRRKFTRHISSLQRFSSGHVGRSLQVINDVLGKCNVP 168
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+K++GHEADDV+ATL GQVL KG+R V+ASPDKDFKQLIS+DVQ+VMPL +L RWSFYT
Sbjct: 169 VIKVDGHEADDVVATLAGQVLNKGFRVVIASPDKDFKQLISDDVQIVMPLPELQRWSFYT 228
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
L+HY QYNCDP S+LSLRCIVGD+VDGVPGIQH+VP FGRKTALKL+KKHGSLE LLNA
Sbjct: 229 LRHYRDQYNCDPESDLSLRCIVGDEVDGVPGIQHLVPSFGRKTALKLIKKHGSLETLLNA 288
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AA+RTVGR YAQ+AL HADYLRRNYEVLAL+R
Sbjct: 289 AAIRTVGRPYAQDALKNHADYLRRNYEVLALKR 321
>gi|296081158|emb|CBI18184.3| unnamed protein product [Vitis vinifera]
Length = 380
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/331 (68%), Positives = 262/331 (79%), Gaps = 13/331 (3%)
Query: 9 AVPIHVNIKPCLPINPFKSISIIKPGKRM---TKTEVVEAKTTVIS-GSF----DRTVGR 60
AV HV + P L P S S+ P K++ T+ ++ A T S GSF ++TVG
Sbjct: 8 AVGGHVLMTPRLHPTPRPS-SLSLPWKKLRSKTRLKITVADATGNSRGSFTWALNQTVGG 66
Query: 61 QLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVI 120
LL + + C EK +SKKRVFFLDVNPLCY GS PSL SFG W+SLFF QVS +DPVI
Sbjct: 67 LLLPRRESCE---EKVRSKKRVFFLDVNPLCYTGSTPSLHSFGHWVSLFFQQVSLSDPVI 123
Query: 121 AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
AV DGE E+R++LLPSYKAHRRKF +QL SQRFS GRS Q + DVL KCNVPV+
Sbjct: 124 AVIDGERCNEYRQKLLPSYKAHRRKFSKQL-PSQRFSSVSAGRSRQVVRDVLRKCNVPVL 182
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
KIEG EADDV+ATLVGQVLQ+GYR V+ASPDKDFKQLISE+VQ+VMP+ + RWSFYTLK
Sbjct: 183 KIEGCEADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFYTLK 242
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
HYIAQYNCDP S+LSLRCI+GD+VDGVPGIQHV PGFGRKTALKLLKKHGSLENLLNAAA
Sbjct: 243 HYIAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAA 302
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
VRTVGR YAQ ALTK+AD+LRRNYE+L+LRR
Sbjct: 303 VRTVGRQYAQNALTKYADFLRRNYEILSLRR 333
>gi|225460702|ref|XP_002267236.1| PREDICTED: 5'-3' exonuclease-like [Vitis vinifera]
Length = 366
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/311 (70%), Positives = 253/311 (81%), Gaps = 12/311 (3%)
Query: 29 SIIKPGKRM---TKTEVVEAKTTVIS-GSF----DRTVGRQLLGKADFCGNGLEKTKSKK 80
S+ P K++ T+ ++ A T S GSF ++TVG LL + + C EK +SKK
Sbjct: 13 SLSLPWKKLRSKTRLKITVADATGNSRGSFTWALNQTVGGLLLPRRESCE---EKVRSKK 69
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYK 140
RVFFLDVNPLCY GS PSL SFG W+SLFF QVS +DPVIAV DGE E+R++LLPSYK
Sbjct: 70 RVFFLDVNPLCYTGSTPSLHSFGHWVSLFFQQVSLSDPVIAVIDGERCNEYRQKLLPSYK 129
Query: 141 AHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQ 200
AHRRKF +QL SQRFS GRS Q + DVL KCNVPV+KIEG EADDV+ATLVGQVLQ
Sbjct: 130 AHRRKFSKQL-PSQRFSSVSAGRSRQVVRDVLRKCNVPVLKIEGCEADDVVATLVGQVLQ 188
Query: 201 KGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIV 260
+GYR V+ASPDKDFKQLISE+VQ+VMP+ + RWSFYTLKHYIAQYNCDP S+LSLRCI+
Sbjct: 189 RGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFYTLKHYIAQYNCDPCSDLSLRCIM 248
Query: 261 GDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYL 320
GD+VDGVPGIQHV PGFGRKTALKLLKKHGSLENLLNAAAVRTVGR YAQ ALTK+AD+L
Sbjct: 249 GDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRQYAQNALTKYADFL 308
Query: 321 RRNYEVLALRR 331
RRNYE+L+LRR
Sbjct: 309 RRNYEILSLRR 319
>gi|449441764|ref|XP_004138652.1| PREDICTED: 5'-3' exonuclease-like [Cucumis sativus]
gi|449490129|ref|XP_004158516.1| PREDICTED: 5'-3' exonuclease-like [Cucumis sativus]
Length = 377
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/331 (63%), Positives = 254/331 (76%), Gaps = 27/331 (8%)
Query: 5 TIEVAVPIHVNIKP----CLPINPFKSISIIKPGKRMTKTEVVEAKTTVISGSFDRTVGR 60
T++ P+ +KP P+N ++ P R+T A T G F +
Sbjct: 28 TLKPEFPLTSKLKPNTWRTKPLN----LTAFAPSSRLTSA----AFTQTDDGKFQPRI-- 77
Query: 61 QLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVI 120
+AD G RVFFLDVNPLCY+GS+PSL++FGRW+S+FF++VSH+DPVI
Sbjct: 78 ----EADNSRTG--------RVFFLDVNPLCYQGSKPSLRNFGRWVSIFFEEVSHSDPVI 125
Query: 121 AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
AVFDGEGG+EHRR LLPSYKAHR KF R +S+RF++G S+Q I D L CNVPVV
Sbjct: 126 AVFDGEGGSEHRRLLLPSYKAHRIKFTRP-PSSKRFTKGNFRTSYQVIRDALRSCNVPVV 184
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
++EGHEADDVIATLV QVLQ+G R VVASPDKDFKQLISED+QLVMPL +L+RWSFYTL+
Sbjct: 185 RVEGHEADDVIATLVEQVLQRGVRVVVASPDKDFKQLISEDIQLVMPLPELNRWSFYTLR 244
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
HY+AQYNCDP S+LSLRCI+GD+VDGVPGIQHV PGFGRKTALKLLKKHGSLENLL+AAA
Sbjct: 245 HYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAA 304
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+RTVG+ YAQ+ALTK+A+YLR NY+VLALRR
Sbjct: 305 IRTVGKPYAQDALTKYAEYLRTNYKVLALRR 335
>gi|186488278|ref|NP_001117409.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|51536440|gb|AAU05458.1| At1g34380 [Arabidopsis thaliana]
gi|52421279|gb|AAU45209.1| At1g34380 [Arabidopsis thaliana]
gi|332193586|gb|AEE31707.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 347
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/279 (69%), Positives = 229/279 (82%), Gaps = 9/279 (3%)
Query: 53 SFDRTVGRQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQ 112
+F RT Q+L K CGN E K KRVFFLDV+PLCYEG++PS Q+FG W+SLFF Q
Sbjct: 46 TFHRTGNVQVLQKDVLCGNNEEIRKKNKRVFFLDVSPLCYEGNKPSSQAFGHWISLFFSQ 105
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVL 172
VS DPVIAV DGE G + RR+LLPSYKAHR+ R+S+ R HQF+ +VL
Sbjct: 106 VSLTDPVIAVIDGEEGNQRRRELLPSYKAHRKS-----PNHGRYSK----RPHQFVDEVL 156
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
KCNVPVV+IEGHEADDV+ATL+ Q +Q+GYRAV+ASPDKDFKQLISE+VQ+V+PL DL
Sbjct: 157 RKCNVPVVRIEGHEADDVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLR 216
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
RWSFYTLKHY AQYNCDP S+LS RCI+GD+VDGVPGIQH+VP FGRKTA+KL++KHGSL
Sbjct: 217 RWSFYTLKHYHAQYNCDPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSL 276
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
E+LL+AAAVRTVGR YAQEALTK+ADYLRRNY+VLAL R
Sbjct: 277 ESLLSAAAVRTVGRPYAQEALTKYADYLRRNYQVLALNR 315
>gi|297851880|ref|XP_002893821.1| At1g34380 [Arabidopsis lyrata subsp. lyrata]
gi|297339663|gb|EFH70080.1| At1g34380 [Arabidopsis lyrata subsp. lyrata]
Length = 335
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 243/307 (79%), Gaps = 18/307 (5%)
Query: 25 FKSISIIKPGKRMTKTEVVEAKTTVISGSFDRTVGRQLLGKADFCGNGLEKTKSKKRVFF 84
F + SI KP + ++T+ V + ++ + +F RT Q+L K CG K KRVFF
Sbjct: 15 FSTKSIDKP--QTSRTKWVSSSSSSVE-TFHRTGYGQVLQKDVICG------KKNKRVFF 65
Query: 85 LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRR 144
LDV+PLCYEG++PS Q+FG W+SLF QVS DPVIAV DGE G + RR+LLPSYKAHR+
Sbjct: 66 LDVSPLCYEGNKPSSQAFGHWISLFLSQVSLTDPVIAVIDGEEGNQRRRELLPSYKAHRK 125
Query: 145 KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYR 204
R+S+ R HQF+ +VL KCNVPVV+++GHEADDV+ATL+ Q +Q+GYR
Sbjct: 126 S-----PNPGRYSK----RPHQFVDEVLRKCNVPVVRLDGHEADDVVATLMEQAVQRGYR 176
Query: 205 AVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
AV+ASPDKDFKQLISE+VQ+V+PL DL RWSFYTLKHY AQYNCDP S+LS RCI+GD+V
Sbjct: 177 AVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIMGDEV 236
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNY 324
DGVPGIQHVVP FGRKTA+KL++KHGSLE+LL+AAAVRTVGR YAQEALTK+ADYLRRNY
Sbjct: 237 DGVPGIQHVVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYLRRNY 296
Query: 325 EVLALRR 331
+VLAL+R
Sbjct: 297 QVLALKR 303
>gi|12323855|gb|AAG51896.1|AC023913_4 DNA polymerase type I, putative; 54894-56354 [Arabidopsis thaliana]
Length = 343
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/279 (68%), Positives = 225/279 (80%), Gaps = 13/279 (4%)
Query: 53 SFDRTVGRQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQ 112
+F RT Q+L K CGN E K KRVFFLDV+PLCYEG++PS Q+FG W+SLFF Q
Sbjct: 46 TFHRTGNVQVLQKDVLCGNNEEIRKKNKRVFFLDVSPLCYEGNKPSSQAFGHWISLFFSQ 105
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVL 172
VS DPVIAV DGE G + RR+LLPSYKAHR+ R+S+ R HQF+ +VL
Sbjct: 106 VSLTDPVIAVIDGEEGNQRRRELLPSYKAHRKS-----PNHGRYSK----RPHQFVDEVL 156
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
KCNVPV GHEADDV+ATL+ Q +Q+GYRAV+ASPDKDFKQLISE+VQ+V+PL DL
Sbjct: 157 RKCNVPV----GHEADDVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLR 212
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
RWSFYTLKHY AQYNCDP S+LS RCI+GD+VDGVPGIQH+VP FGRKTA+KL++KHGSL
Sbjct: 213 RWSFYTLKHYHAQYNCDPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSL 272
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
E+LL+AAAVRTVGR YAQEALTK+ADYLRRNY+VLAL R
Sbjct: 273 ESLLSAAAVRTVGRPYAQEALTKYADYLRRNYQVLALNR 311
>gi|56784845|dbj|BAD82085.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
Group]
gi|215686953|dbj|BAG89766.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737221|dbj|BAG96150.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 339
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/273 (65%), Positives = 218/273 (79%), Gaps = 18/273 (6%)
Query: 60 RQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV 119
+QL+G+ +G +K RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV
Sbjct: 66 KQLVGR-----DGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPV 120
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV DGEGG E+RR+LLPSYKAHR RG + ++DVL +CNVPV
Sbjct: 121 VAVLDGEGGNEYRRRLLPSYKAHR-------------PRGPGTGADSRVIDVLRECNVPV 167
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
V+++G+EADDV+ATL QVLQKG+R V+ SPDKDFKQLISEDVQLVMP+ ++ RWSFYTL
Sbjct: 168 VRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTL 227
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+HY+AQY CDP ++LSLRC +GD+ DG+PGIQH+VPGFGRKTA+KLLKKHGSLENLLN A
Sbjct: 228 RHYVAQYKCDPTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTA 287
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRRY 332
AVRTVG+DYAQ+AL KHADYLR+NYEVL+L+RY
Sbjct: 288 AVRTVGKDYAQDALVKHADYLRKNYEVLSLKRY 320
>gi|218189462|gb|EEC71889.1| hypothetical protein OsI_04629 [Oryza sativa Indica Group]
Length = 356
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/272 (65%), Positives = 217/272 (79%), Gaps = 18/272 (6%)
Query: 60 RQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV 119
+QL+G+ +G +K RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV
Sbjct: 66 KQLVGR-----DGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPV 120
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV DGEGG E+RR+LLPSYKAHR RG + ++DVL +CNVPV
Sbjct: 121 VAVLDGEGGNEYRRRLLPSYKAHR-------------PRGPGTGADSRVIDVLRECNVPV 167
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
V+++G+EADDV+ATL QVLQKG+R V+ SPDKDFKQLISEDVQLVMP+ ++ RWSFYTL
Sbjct: 168 VRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTL 227
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+HY+AQY CDP ++LSLRC +GD+ DGVPGIQH+VPGFGRKTA+KLLKKHGSLENLLN A
Sbjct: 228 RHYVAQYKCDPTADLSLRCFIGDEADGVPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTA 287
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVRTVG+DYAQ+AL KHADYLR+NYEVL+L+R
Sbjct: 288 AVRTVGKDYAQDALVKHADYLRKNYEVLSLKR 319
>gi|19386844|dbj|BAB86222.1| putative DNA polymerase I [Oryza sativa Japonica Group]
gi|20804753|dbj|BAB92438.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
Group]
gi|215686883|dbj|BAG89733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619621|gb|EEE55753.1| hypothetical protein OsJ_04262 [Oryza sativa Japonica Group]
Length = 356
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/272 (65%), Positives = 217/272 (79%), Gaps = 18/272 (6%)
Query: 60 RQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV 119
+QL+G+ +G +K RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV
Sbjct: 66 KQLVGR-----DGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPV 120
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV DGEGG E+RR+LLPSYKAHR RG + ++DVL +CNVPV
Sbjct: 121 VAVLDGEGGNEYRRRLLPSYKAHR-------------PRGPGTGADSRVIDVLRECNVPV 167
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
V+++G+EADDV+ATL QVLQKG+R V+ SPDKDFKQLISEDVQLVMP+ ++ RWSFYTL
Sbjct: 168 VRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTL 227
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+HY+AQY CDP ++LSLRC +GD+ DG+PGIQH+VPGFGRKTA+KLLKKHGSLENLLN A
Sbjct: 228 RHYVAQYKCDPTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTA 287
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVRTVG+DYAQ+AL KHADYLR+NYEVL+L+R
Sbjct: 288 AVRTVGKDYAQDALVKHADYLRKNYEVLSLKR 319
>gi|115441359|ref|NP_001044959.1| Os01g0874800 [Oryza sativa Japonica Group]
gi|56784844|dbj|BAD82084.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
Group]
gi|113534490|dbj|BAF06873.1| Os01g0874800 [Oryza sativa Japonica Group]
gi|215740431|dbj|BAG97087.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 358
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/272 (65%), Positives = 217/272 (79%), Gaps = 18/272 (6%)
Query: 60 RQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV 119
+QL+G+ +G +K RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV
Sbjct: 66 KQLVGR-----DGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPV 120
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV DGEGG E+RR+LLPSYKAHR RG + ++DVL +CNVPV
Sbjct: 121 VAVLDGEGGNEYRRRLLPSYKAHR-------------PRGPGTGADSRVIDVLRECNVPV 167
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
V+++G+EADDV+ATL QVLQKG+R V+ SPDKDFKQLISEDVQLVMP+ ++ RWSFYTL
Sbjct: 168 VRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTL 227
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+HY+AQY CDP ++LSLRC +GD+ DG+PGIQH+VPGFGRKTA+KLLKKHGSLENLLN A
Sbjct: 228 RHYVAQYKCDPTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTA 287
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVRTVG+DYAQ+AL KHADYLR+NYEVL+L+R
Sbjct: 288 AVRTVGKDYAQDALVKHADYLRKNYEVLSLKR 319
>gi|242059405|ref|XP_002458848.1| hypothetical protein SORBIDRAFT_03g041390 [Sorghum bicolor]
gi|241930823|gb|EES03968.1| hypothetical protein SORBIDRAFT_03g041390 [Sorghum bicolor]
Length = 350
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 213/261 (81%), Gaps = 13/261 (4%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
+G +K RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV+AV DGEGG E
Sbjct: 67 DGSPSKPTKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPVVAVLDGEGGNE 126
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+RR+LLPSYKAHR +RG + +++VL +CNVPVV+++G+EADDV
Sbjct: 127 YRRRLLPSYKAHR-------------ARGVGTGADTRVVNVLRECNVPVVRVDGYEADDV 173
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDP 250
+ATL QVLQKGYR V+ASPDKDFKQLIS+DVQLVMP+ ++ RWSFYTL+HY+AQY CDP
Sbjct: 174 VATLTEQVLQKGYRVVIASPDKDFKQLISDDVQLVMPIPEIGRWSFYTLRHYVAQYKCDP 233
Query: 251 HSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQ 310
++LSLRC +GD+ DGVPGIQH+VPGFGRKTA+KLL+KHGSLENLLN AA RTVG+DYAQ
Sbjct: 234 TADLSLRCFMGDETDGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAATRTVGKDYAQ 293
Query: 311 EALTKHADYLRRNYEVLALRR 331
+ALTKHADYLR+NYEVL+L+R
Sbjct: 294 DALTKHADYLRKNYEVLSLKR 314
>gi|357126143|ref|XP_003564748.1| PREDICTED: 5'-3' exonuclease-like [Brachypodium distachyon]
Length = 356
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 211/261 (80%), Gaps = 13/261 (4%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
N + SK RVFFLDVNP+C+ GS+ SL +F RWLSLFF VS DPV+AV DG GG E
Sbjct: 70 NNVPARPSKGRVFFLDVNPICFRGSQRSLGAFARWLSLFFAHVSLRDPVVAVLDGVGGNE 129
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+RR+LLPSYKAHR +RG + ++DVL +CNVPVV+I+GHEADDV
Sbjct: 130 YRRRLLPSYKAHR-------------TRGVGKGADSRVVDVLRECNVPVVQIDGHEADDV 176
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDP 250
+ATL QVLQKG+R V+ SPDKDFKQLISEDVQLVMP+ ++ RWSFYTL+HY+AQY C+P
Sbjct: 177 VATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCNP 236
Query: 251 HSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQ 310
++LSLRC +GD+ DGVPGIQH+VPGFGRKTA+KLLKKHG+LENLLN AA++TVG+DYAQ
Sbjct: 237 TADLSLRCFMGDEADGVPGIQHLVPGFGRKTAVKLLKKHGTLENLLNTAAIKTVGKDYAQ 296
Query: 311 EALTKHADYLRRNYEVLALRR 331
+AL KHADYLR+NYEVL+L+R
Sbjct: 297 DALVKHADYLRKNYEVLSLKR 317
>gi|219885673|gb|ACL53211.1| unknown [Zea mays]
gi|238009624|gb|ACR35847.1| unknown [Zea mays]
gi|414879463|tpg|DAA56594.1| TPA: DNA polymerase I [Zea mays]
Length = 352
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/261 (65%), Positives = 211/261 (80%), Gaps = 13/261 (4%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
+G SK RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV+AV DG+GG E
Sbjct: 69 DGSPSKTSKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSIRDPVVAVLDGDGGNE 128
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+RR+LLPSYKAHR +RG + ++DVL +CNV VV+++G+EADDV
Sbjct: 129 YRRRLLPSYKAHR-------------ARGVGTGADTRVVDVLRQCNVAVVRVDGYEADDV 175
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDP 250
+ATL QVLQKGYR +ASPDKDFKQLIS+DVQLV+P+ ++ RWSFYTL+HY+AQY CDP
Sbjct: 176 VATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDP 235
Query: 251 HSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQ 310
++LSLRC +GD+ DGVPGIQH+VPGFGRKTA+KLL+KHGSLENLLN AA+RTVGR YAQ
Sbjct: 236 TADLSLRCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAAIRTVGRGYAQ 295
Query: 311 EALTKHADYLRRNYEVLALRR 331
+ALTKHADYLR+NY+VL+L+R
Sbjct: 296 DALTKHADYLRKNYQVLSLKR 316
>gi|195651987|gb|ACG45461.1| DNA polymerase I [Zea mays]
Length = 346
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/261 (65%), Positives = 211/261 (80%), Gaps = 13/261 (4%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
+G SK RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV+AV DG+GG E
Sbjct: 63 DGSPSKPSKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSIRDPVVAVLDGDGGNE 122
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+RR+LLPSYKAHR +RG + ++DVL +CNV VV+++G+EADDV
Sbjct: 123 YRRRLLPSYKAHR-------------ARGVGTGADTRVVDVLRQCNVAVVRVDGYEADDV 169
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDP 250
+ATL QVLQKGYR +ASPDKDFKQLIS+DVQLV+P+ ++ RWSFYTL+HY+AQY CDP
Sbjct: 170 VATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDP 229
Query: 251 HSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQ 310
++LSLRC +GD+ DGVPGIQH+VPGFGRKTA+KLL+KHGSLENLLN AA+RTVGR YAQ
Sbjct: 230 TADLSLRCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAAIRTVGRGYAQ 289
Query: 311 EALTKHADYLRRNYEVLALRR 331
+ALTKHADYLR+NY+VL+L+R
Sbjct: 290 DALTKHADYLRKNYQVLSLKR 310
>gi|326522204|dbj|BAK04230.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 350
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/254 (66%), Positives = 205/254 (80%), Gaps = 13/254 (5%)
Query: 78 SKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLP 137
SK RVFFLDVNP+C+ GS+ SL +F RWL+LFF VS DPV+AVFDG GG ++RR+LLP
Sbjct: 77 SKDRVFFLDVNPICFRGSQRSLSAFARWLALFFTHVSLRDPVVAVFDGAGGNDYRRRLLP 136
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQ 197
SYKAHR +RG + ++DVL +CNVP+V+++G+EADDV+ATL Q
Sbjct: 137 SYKAHR-------------TRGVGTGADSRVVDVLRECNVPIVQVDGYEADDVVATLTEQ 183
Query: 198 VLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
VLQKGYR V+ SPDKDFKQLISEDVQLVMP+ ++ RWSFYTL+HY+AQY CDP +LSLR
Sbjct: 184 VLQKGYRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTVDLSLR 243
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHA 317
C +GD+ DGVPGIQH+ PGFGRKTA+KLL KHGSLENLL AAVRTVG++YAQ+ L KHA
Sbjct: 244 CFMGDEADGVPGIQHLAPGFGRKTAVKLLNKHGSLENLLKTAAVRTVGKEYAQDVLVKHA 303
Query: 318 DYLRRNYEVLALRR 331
DYLR+NYEVL+L+R
Sbjct: 304 DYLRKNYEVLSLKR 317
>gi|414879462|tpg|DAA56593.1| TPA: hypothetical protein ZEAMMB73_021888 [Zea mays]
Length = 333
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 171/271 (63%), Positives = 211/271 (77%), Gaps = 22/271 (8%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
+G SK RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV+AV DG+GG E
Sbjct: 69 DGSPSKTSKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSIRDPVVAVLDGDGGNE 128
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+RR+LLPSYKAHR +RG + ++DVL +CNV VV+++G+EADDV
Sbjct: 129 YRRRLLPSYKAHR-------------ARGVGTGADTRVVDVLRQCNVAVVRVDGYEADDV 175
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDP 250
+ATL QVLQKGYR +ASPDKDFKQLIS+DVQLV+P+ ++ RWSFYTL+HY+AQY CDP
Sbjct: 176 VATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDP 235
Query: 251 HSELSL---------RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
++LSL C +GD+ DGVPGIQH+VPGFGRKTA+KLL+KHGSLENLLN AA+
Sbjct: 236 TADLSLIMNWKLCCTGCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAAI 295
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALRRY 332
RTVGR YAQ+ALTKHADYLR+NY+VL+L+RY
Sbjct: 296 RTVGRGYAQDALTKHADYLRKNYQVLSLKRY 326
>gi|226529211|ref|NP_001146806.1| hypothetical protein [Zea mays]
gi|219888829|gb|ACL54789.1| unknown [Zea mays]
gi|414879461|tpg|DAA56592.1| TPA: hypothetical protein ZEAMMB73_021888 [Zea mays]
Length = 361
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 170/270 (62%), Positives = 210/270 (77%), Gaps = 22/270 (8%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
+G SK RVFFLDVNPLC+ GS+ SL +F RWL+LFF VS DPV+AV DG+GG E
Sbjct: 69 DGSPSKTSKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSIRDPVVAVLDGDGGNE 128
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+RR+LLPSYKAHR +RG + ++DVL +CNV VV+++G+EADDV
Sbjct: 129 YRRRLLPSYKAHR-------------ARGVGTGADTRVVDVLRQCNVAVVRVDGYEADDV 175
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDP 250
+ATL QVLQKGYR +ASPDKDFKQLIS+DVQLV+P+ ++ RWSFYTL+HY+AQY CDP
Sbjct: 176 VATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDP 235
Query: 251 HSELSL---------RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
++LSL C +GD+ DGVPGIQH+VPGFGRKTA+KLL+KHGSLENLLN AA+
Sbjct: 236 TADLSLIMNWKLCCTGCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAAI 295
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALRR 331
RTVGR YAQ+ALTKHADYLR+NY+VL+L+R
Sbjct: 296 RTVGRGYAQDALTKHADYLRKNYQVLSLKR 325
>gi|413951784|gb|AFW84433.1| hypothetical protein ZEAMMB73_411174 [Zea mays]
Length = 380
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 157/277 (56%), Positives = 197/277 (71%), Gaps = 40/277 (14%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
+G +K RVFFLDVNPLC+ GS+ +L +F RWL+LFF VS DPV+ V DG+GG E
Sbjct: 82 DGAPSKPTKPRVFFLDVNPLCFRGSQRNLGAFARWLALFFAHVSLRDPVV-VLDGDGGNE 140
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
+ R++LPSYK+HR +RG + +++VL +CNVPVV+++G+EADDV
Sbjct: 141 YWRRVLPSYKSHR-------------ARGVGTGADTRVVNVLCECNVPVVRVDGYEADDV 187
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQL-VMPLQDLDRWSF------------- 236
+ATL QVLQKGYR ASPDKDFKQL+S+DVQL VMP+ ++ RWSF
Sbjct: 188 VATLTEQVLQKGYRVFKASPDKDFKQLMSDDVQLAVMPIPEIGRWSFRGPVMAKYVFDIA 247
Query: 237 ------------YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALK 284
YTL+ Y+AQY CDP ++LSLRC +GD+ DGVPGIQH+V GFGRKTALK
Sbjct: 248 IPYFWVVLRHCFYTLRQYVAQYKCDPTADLSLRCFMGDEADGVPGIQHLVLGFGRKTALK 307
Query: 285 LLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLR 321
LL+KHGSLENLLN AA+RTVG+ YAQ+ALTKHADYLR
Sbjct: 308 LLQKHGSLENLLNTAAIRTVGKGYAQDALTKHADYLR 344
>gi|302806216|ref|XP_002984858.1| hypothetical protein SELMODRAFT_46232 [Selaginella moellendorffii]
gi|300147444|gb|EFJ14108.1| hypothetical protein SELMODRAFT_46232 [Selaginella moellendorffii]
Length = 273
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 146/255 (57%), Positives = 189/255 (74%), Gaps = 6/255 (2%)
Query: 77 KSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLL 136
KS RV+ LDV+PLCY GS+P F W+ F ++ DPVIAVFDGE G ++RR++L
Sbjct: 2 KSVSRVYVLDVHPLCYRGSKPDSSEFLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKIL 61
Query: 137 PSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
PSYKA RRKF + L S +++RG +F L +CN+PVVK++ EADDVIATL
Sbjct: 62 PSYKAGRRKF-KPLDPSFKWTRGLEASFSRFQC-FLRQCNIPVVKVDNAEADDVIATLAR 119
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
QV + +AV+ASPDKDFKQL+SE+V+L++P DL RWSFYT+K Y+ Q+ C+P EL L
Sbjct: 120 QVNDRSLKAVIASPDKDFKQLVSENVELLIPFADLRRWSFYTVKDYVEQHKCEPVIELGL 179
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKH 316
RC++GD DGVPG VPGFGRKTALKL++KHGSLENLL+AAA+RTVG+ Y Q+AL +H
Sbjct: 180 RCLLGDAADGVPG----VPGFGRKTALKLMRKHGSLENLLSAAAIRTVGKPYIQDALKEH 235
Query: 317 ADYLRRNYEVLALRR 331
+ L +N EVL+LRR
Sbjct: 236 SVLLEKNLEVLSLRR 250
>gi|302808435|ref|XP_002985912.1| hypothetical protein SELMODRAFT_46231 [Selaginella moellendorffii]
gi|300146419|gb|EFJ13089.1| hypothetical protein SELMODRAFT_46231 [Selaginella moellendorffii]
Length = 273
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/255 (57%), Positives = 188/255 (73%), Gaps = 6/255 (2%)
Query: 77 KSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLL 136
KS RV+ LDV+PLCY GS+P F W+ F ++ DPVIAVFDGE G ++RR++L
Sbjct: 2 KSVSRVYVLDVHPLCYRGSKPDSSEFLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKIL 61
Query: 137 PSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
PSYKA RRKF + L S +++RG +F L +CN+PVVK++ EADDVIATL
Sbjct: 62 PSYKAGRRKF-KPLDPSFKWTRGLEASFSRFQC-FLRQCNIPVVKVDNVEADDVIATLAR 119
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
QV + +AV+ASPDKDFKQL+SE+V+L++P DL RWSFYT+K Y+ Q+ C+P EL L
Sbjct: 120 QVNDRSLKAVIASPDKDFKQLVSENVELLIPFADLRRWSFYTVKDYVEQHKCEPGIELGL 179
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKH 316
RC++GD DGVPG VPGFGRKTALKL++KHGSLENLL+AAA RTVG+ Y Q+AL +H
Sbjct: 180 RCLLGDAADGVPG----VPGFGRKTALKLMRKHGSLENLLSAAAFRTVGKPYIQDALKEH 235
Query: 317 ADYLRRNYEVLALRR 331
+ L +N EVL+LRR
Sbjct: 236 SVLLEKNLEVLSLRR 250
>gi|302808221|ref|XP_002985805.1| hypothetical protein SELMODRAFT_122968 [Selaginella moellendorffii]
gi|300146312|gb|EFJ12982.1| hypothetical protein SELMODRAFT_122968 [Selaginella moellendorffii]
Length = 324
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 145/255 (56%), Positives = 188/255 (73%), Gaps = 6/255 (2%)
Query: 77 KSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLL 136
KS RV+ LDV+PLCY GS+P F W+ F ++ DPVIAVFDGE G ++RR++L
Sbjct: 40 KSVSRVYVLDVHPLCYRGSKPDSSEFLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKIL 99
Query: 137 PSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
P+YKA RRKF + L S +++RG +F L +CN+PVVK++ EADDVIATL
Sbjct: 100 PAYKAGRRKF-KPLDPSFKWTRGLEASFSRFQC-FLRQCNIPVVKVDNAEADDVIATLAR 157
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
QV + +AV+ASPDKDFKQL+SE+V+L++P DL RWSFYT+K Y+ Q+ C+P EL L
Sbjct: 158 QVNDRSLKAVIASPDKDFKQLVSENVELLIPFADLRRWSFYTVKDYVEQHKCEPGIELGL 217
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKH 316
RC++GD DGVPG VPGFGRKTALKL++KHGSLENLL+AAA RTVG+ Y Q+AL +H
Sbjct: 218 RCLLGDAADGVPG----VPGFGRKTALKLMRKHGSLENLLSAAAFRTVGKPYIQDALKEH 273
Query: 317 ADYLRRNYEVLALRR 331
+ L +N EVL+LRR
Sbjct: 274 SVLLEKNLEVLSLRR 288
>gi|42562521|ref|NP_174698.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332193585|gb|AEE31706.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 264
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/205 (65%), Positives = 158/205 (77%), Gaps = 9/205 (4%)
Query: 53 SFDRTVGRQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQ 112
+F RT Q+L K CGN E K KRVFFLDV+PLCYEG++PS Q+FG W+SLFF Q
Sbjct: 46 TFHRTGNVQVLQKDVLCGNNEEIRKKNKRVFFLDVSPLCYEGNKPSSQAFGHWISLFFSQ 105
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVL 172
VS DPVIAV DGE G + RR+LLPSYKAHR+ R+S+ R HQF+ +VL
Sbjct: 106 VSLTDPVIAVIDGEEGNQRRRELLPSYKAHRKS-----PNHGRYSK----RPHQFVDEVL 156
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
KCNVPVV+IEGHEADDV+ATL+ Q +Q+GYRAV+ASPDKDFKQLISE+VQ+V+PL DL
Sbjct: 157 RKCNVPVVRIEGHEADDVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLR 216
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLR 257
RWSFYTLKHY AQYNCDP S+LS R
Sbjct: 217 RWSFYTLKHYHAQYNCDPQSDLSFR 241
>gi|168021165|ref|XP_001763112.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685595|gb|EDQ71989.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 302
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/263 (51%), Positives = 182/263 (69%), Gaps = 3/263 (1%)
Query: 70 GNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGT 129
GN + KS+KR++ +DV+PLCY GS+ + W++L F +V +P+IAV DGE G
Sbjct: 7 GNTNKSRKSRKRLYLVDVHPLCYNGSKVQPRKVIEWMTLLFSEVVQDNPIIAVMDGERGN 66
Query: 130 EHRRQLLPSYKAHRRKFLRQLTASQRFSRGR--VGRSHQFILDVLGKCNVPVVKIEGHEA 187
E+RR LLPSYKA +R F R L A S + ++ I L C++PVVK E EA
Sbjct: 67 EYRRALLPSYKA-KRNFYRPLGAGYGHSSAANDLRKALPLIHGFLSLCHIPVVKQEFAEA 125
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DDVIATL Q KG++ V+ASPD DF+QL++ DV +++P+ +L RWSF+TL++Y+AQ
Sbjct: 126 DDVIATLARQARHKGFQVVIASPDMDFQQLLTPDVHMLLPVPELGRWSFFTLQNYVAQNT 185
Query: 248 CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRD 307
P EL L+C++GD D VPG+ V PGFG+ TALKL+ KHGSLENLL AAA RTVGR+
Sbjct: 186 ATPDLELGLKCLLGDVSDNVPGLPDVSPGFGKNTALKLMLKHGSLENLLAAAATRTVGRE 245
Query: 308 YAQEALTKHADYLRRNYEVLALR 330
Y Q+AL KH + LRRN +VL+LR
Sbjct: 246 YIQDALKKHENLLRRNLQVLSLR 268
>gi|302789077|ref|XP_002976307.1| hypothetical protein SELMODRAFT_105035 [Selaginella moellendorffii]
gi|300155937|gb|EFJ22567.1| hypothetical protein SELMODRAFT_105035 [Selaginella moellendorffii]
Length = 277
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/255 (53%), Positives = 181/255 (70%), Gaps = 16/255 (6%)
Query: 77 KSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLL 136
KS RV+ LDV+PLCY GS+P F W+ F ++ DPVIAVFDGE G ++RR+LL
Sbjct: 3 KSVSRVYVLDVHPLCYCGSKPDSSEFLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKLL 62
Query: 137 PSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
PSYKA RRKF + L S +++RG ++ ++ VVK + EADDV+ATL
Sbjct: 63 PSYKAGRRKF-KPLDPSFKWTRG-----------IVLSVDIHVVKADNAEADDVVATLAR 110
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
QV + +AV+AS DKDFKQL+SE+V+L++P DL RWSFYT+K + Q+ C+P EL
Sbjct: 111 QVNDRSLKAVIASRDKDFKQLVSENVELLIPFADLRRWSFYTVKDDVEQHKCEPGIELGH 170
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKH 316
RC++GD DGVPG VPGFGRKT+LKL++KHGSLENLL+AAA+RTVG+ Y Q+AL +H
Sbjct: 171 RCLLGDAADGVPG----VPGFGRKTSLKLMRKHGSLENLLSAAAIRTVGKPYIQDALKEH 226
Query: 317 ADYLRRNYEVLALRR 331
+ L +N +VL+LRR
Sbjct: 227 SVLLEKNLKVLSLRR 241
>gi|302789073|ref|XP_002976305.1| hypothetical protein SELMODRAFT_416415 [Selaginella moellendorffii]
gi|300155935|gb|EFJ22565.1| hypothetical protein SELMODRAFT_416415 [Selaginella moellendorffii]
Length = 300
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 124/235 (52%), Gaps = 39/235 (16%)
Query: 56 RTVGRQLLGKADFCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSH 115
R+ +LG A G + KS R + LDV+PLCY GS+P F W+ F ++
Sbjct: 91 RSSESPVLGGAGADSIGFAR-KSVGRGYVLDVHPLCYRGSKPDSSEFLWWMRAFLRRIVL 149
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
ADPVIAVFDGE G ++RR++LPSYKA RRKF + L S +++RG +F L +C
Sbjct: 150 ADPVIAVFDGEFGNDYRRKILPSYKAGRRKF-KPLDPSFKWTRGLEASFSRF-QRFLRQC 207
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
N+PVVK++ EADDV+ TL QV + +AV+ASPDKDFKQL
Sbjct: 208 NIPVVKVDNAEADDVVTTLARQVTDRSLKAVIASPDKDFKQL------------------ 249
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
Y+ Q+ C+P EL LR +H V F ++L K G
Sbjct: 250 -----DYVEQHKCEPGIELGLR-------------KHPVSFFSSSELIRLEKPRG 286
>gi|147771801|emb|CAN71326.1| hypothetical protein VITISV_007135 [Vitis vinifera]
Length = 119
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 69/72 (95%)
Query: 260 VGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADY 319
+GD+VDGVPGIQHV PGFGRKTALKLLKKHGSLENLLNAAAVRTVGR YAQ ALTK+AD+
Sbjct: 1 MGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRQYAQNALTKYADF 60
Query: 320 LRRNYEVLALRR 331
LRRNYE+L+LRR
Sbjct: 61 LRRNYEILSLRR 72
>gi|413951782|gb|AFW84431.1| hypothetical protein ZEAMMB73_770647 [Zea mays]
Length = 274
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 74/94 (78%)
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
R Q I K + VV++ G+EADDV+ATL QVLQKGYR V+ASPDK+FKQLIS+DV
Sbjct: 116 RGAQIIECQFWKRQIQVVRVHGYEADDVVATLTEQVLQKGYRVVIASPDKEFKQLISDDV 175
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
QLVMP+ + RWSFYTL+HY+AQY CDP ++LSL
Sbjct: 176 QLVMPIPKIGRWSFYTLRHYVAQYKCDPTADLSL 209
>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
Length = 931
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP-VIAVFDGE 126
K++F LD L + G P + S G +++ + + P ++AV +
Sbjct: 2 KKLFLLDAYALIFRGYYAFIKNPRINSKGMNTSAIVGFMNSLLEVIRKEQPHLLAVCFDK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG++ R L P YKA+R + + RF+ + HQ +L +PV++ EG+E
Sbjct: 62 GGSQERSALFPEYKANRE----ETPEAIRFA---IPYIHQ----ILHAMQIPVIEKEGYE 110
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL---QDLDRWSFYTLKHYI 243
ADD+I TL Q ++GY + +PDKD+ QL+S ++ + P +D + W +K
Sbjct: 111 ADDIIGTLAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENF 170
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
N P + L ++GD VD +PG+ PG G KTA KLLK+ GSLENLL+
Sbjct: 171 QVEN--PEQVIDLLGMMGDAVDNIPGL----PGVGEKTAQKLLKEFGSLENLLD 218
>gi|365959716|ref|YP_004941283.1| DNA polymerase I [Flavobacterium columnare ATCC 49512]
gi|365736397|gb|AEW85490.1| DNA polymerase I [Flavobacterium columnare ATCC 49512]
Length = 944
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 35/236 (14%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 TQKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAIIGFMNSLMDVIKREKPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ +R ++ YKA+R + + + + +I ++L ++P+++I G
Sbjct: 63 DKGGSNYRLEMFTEYKANRDE-----------TPEAIKIAIPYIQEILNAMHIPIIEIAG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKH 241
+EADD+I TL + ++GY + +PDKDF QL+SE++ + P + D++ W +K
Sbjct: 112 YEADDLIGTLAKKAEKQGYLVYMVTPDKDFGQLVSENIFMYRPARAGNDIEIWGVEEIK- 170
Query: 242 YIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A++ DP + ++GD VD +PG+ PG G KTA KLL ++GS+ENLL
Sbjct: 171 --AKFEVQDPLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLAEYGSMENLL 220
>gi|345303265|ref|YP_004825167.1| DNA polymerase I [Rhodothermus marinus SG0.5JP17-172]
gi|345112498|gb|AEN73330.1| DNA polymerase I [Rhodothermus marinus SG0.5JP17-172]
Length = 945
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 34/253 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSH---------ADPVIAVFD- 124
+R++ +D L Y SRP + S G+ S + + D + VFD
Sbjct: 23 QRLYLIDAMALAYRAHYVFISRPLVNSKGQNTSAAYGFTTSLLKLIEDHGMDYMAVVFDA 82
Query: 125 -GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
GE GT R +L YKAHR L A+ +I +++ ++PV++
Sbjct: 83 GGEEGT-FREELYEEYKAHREPPPEDLLANL-----------PWIKEIVRALDIPVIEEP 130
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADDVI TL + G V+ SPDKDF QL+S + + P + + + T++ +
Sbjct: 131 GVEADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLSPHISIYKPARRGETFDLITIETFR 190
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
Y +PH + + ++GD D VPG VPG G KTA++L++++GS+ENLL A
Sbjct: 191 ETYGLEPHQFIDVLALMGDPSDNVPG----VPGIGEKTAVQLIQQYGSVENLL--AHAEE 244
Query: 304 VGRDYAQEALTKH 316
V A+E L H
Sbjct: 245 VKGKRAREGLLNH 257
>gi|347535057|ref|YP_004842482.1| DNA polymerase I [Flavobacterium branchiophilum FL-15]
gi|345528215|emb|CCB68245.1| DNA polymerase I [Flavobacterium branchiophilum FL-15]
Length = 944
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 29/232 (12%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDGE 126
KR+F LD L + G P + S G +++ D + P +AV +
Sbjct: 5 KRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAIMGFMNALMDVIKREKPDHLAVAFDK 64
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG+++R ++ YKAHR + + + + +I ++L ++P+++ G E
Sbjct: 65 GGSDYRYEMYQEYKAHRDE-----------TPEAIKIAVPYIQELLRAMHIPIIEKAGFE 113
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I TL Q +KGYR + +PDKDF QL+SE++ + P + + + + ++++
Sbjct: 114 ADDLIGTLAKQAEKKGYRVFMVTPDKDFAQLVSENIFMYKPARMGNDIEIWGVPEVLSKF 173
Query: 247 N-CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+P + ++GD D +PG+ PG G KTA K L + GSLENLLN
Sbjct: 174 EISNPLQVIDFLGMMGDAADNIPGL----PGVGEKTAKKFLAEFGSLENLLN 221
>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
Length = 948
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
S+KR++ LD L + G P + S G +++ D + P +AV
Sbjct: 2 SQKRLYLLDAYALIFRGYFAFIKNPRINSKGMDTSAIMGFMNALMDVIKREKPDHLAVAF 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ +R ++ YKAHR + + + + +I D+L ++P++++ G
Sbjct: 62 DKGGSTYRYEMYQEYKAHRDE-----------TPEAIKIAVPYIQDLLKAMHIPIIEVAG 110
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++ ++ + +PDKDF QL+SE++ + P + + + + +A
Sbjct: 111 FEADDLIGTLAKQAEKEDFKVYMVTPDKDFAQLVSENIFMYKPARMGNDIEIWGVPEVLA 170
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K LK++GS+ENLL
Sbjct: 171 KFEIERPEQVIDFLGMMGDAADNIPGL----PGVGEKTAKKFLKEYGSIENLL 219
>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
Length = 941
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADPV-IAVFD 124
S KR+F LD L + G P + S G +L+ FD + P +AV
Sbjct: 4 SDKRLFLLDAYALIFRGYYAFIKNPRINSKGFNTSAIMGFLNSLFDVIRREQPTHLAVVF 63
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G R P YKA+R + + + +I ++L +PV+ +G
Sbjct: 64 DVGEATIRTVDFPQYKANREE-----------TPEAIREGVPYIQEILNALRIPVLYAQG 112
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL---QDLDRWSFYTLKH 241
+EADDVI TL + Q+GY + +PDKDF QL+SE +++ P + ++ W +K
Sbjct: 113 YEADDVIGTLAKKAEQRGYTTYMVTPDKDFAQLVSEHIKMYKPPAYGRGVEIWGVEEVKE 172
Query: 242 YIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+Y DP + L ++GD VD +PGI PG G KTA+K +K +GSLE LL
Sbjct: 173 ---KYQIEDPIQVIDLLGMMGDSVDNIPGI----PGVGEKTAIKFIKTYGSLEGLL 221
>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
Length = 924
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 123/253 (48%), Gaps = 34/253 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSH---------ADPVIAVFD- 124
+R++ +D L Y SRP + S G+ S + + D + VFD
Sbjct: 2 QRLYLIDAMALAYRAQYVFISRPLVNSKGQNTSAAYGFTTSLLKLIEEHGMDYMAVVFDA 61
Query: 125 -GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
GE GT R + YKAHR L A+ +I +++ ++PV++
Sbjct: 62 GGEEGT-FREAIYEEYKAHREPPPEDLLANL-----------PWIKEIVRALDIPVIEEP 109
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADDVI TL + G V+ SPDKDF QL+S V + P + + + T++ +
Sbjct: 110 GVEADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLSPHVSIYKPARRGETFDLITIETFR 169
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
Y +PH + + ++GD D VPG VPG G KTA++L++++GS+ENLL A
Sbjct: 170 ETYGLEPHQFIDVLALMGDPSDNVPG----VPGIGEKTAVQLIQQYGSVENLL--AHAEE 223
Query: 304 VGRDYAQEALTKH 316
V A+E L H
Sbjct: 224 VKGKRAREGLLNH 236
>gi|383449641|ref|YP_005356362.1| DNA polymerase I [Flavobacterium indicum GPTSA100-9]
gi|380501263|emb|CCG52305.1| DNA polymerase I [Flavobacterium indicum GPTSA100-9]
Length = 948
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 35/236 (14%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
S+KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 2 SQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLMDVIRREKPDHLAVAF 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+++R ++ YKA+R + + + + +I ++L ++P+++ G
Sbjct: 62 DKGGSDYRLEMFTEYKANRDE-----------TPEAIKIAVPYIQELLRAMHIPIIEEAG 110
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKH 241
+EADD+I TL Q ++GY+ + +PDKDF QL+SE++ + P + D++ W +K
Sbjct: 111 YEADDLIGTLAKQAEKQGYKVFMVTPDKDFGQLVSENIFMYRPARMGNDIEIWGVDEVK- 169
Query: 242 YIAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A++ + P + ++GD VD +PG+ PG G KTA KLL + GS+ENLL
Sbjct: 170 --AKFEVEHPLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLAEFGSMENLL 219
>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
Length = 924
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 34/253 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSH---------ADPVIAVFD- 124
+R++ +D L Y SRP + S G+ S + + D + VFD
Sbjct: 2 QRLYLIDAMALAYRAHYVFISRPLVNSKGQNTSAAYGFTTSLLKLIEEHGMDYMAVVFDA 61
Query: 125 -GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
GE GT R + YKAHR L A+ +I +++ ++PV++
Sbjct: 62 GGEEGT-FREAIYEEYKAHREPPPEDLLANL-----------PWIKEIVRALDIPVIEEP 109
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADDVI TL + G V+ SPDKDF QL+S + + P + + + T++ +
Sbjct: 110 GVEADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFR 169
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
Y +PH + + ++GD D VPG VPG G KTA++L++++GS+ENLL A
Sbjct: 170 ETYGLEPHQFIDVLALMGDPSDNVPG----VPGIGEKTAVQLIQQYGSVENLL--AHAEE 223
Query: 304 VGRDYAQEALTKH 316
V A+E L H
Sbjct: 224 VKGKRAREGLLNH 236
>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
Length = 924
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 34/253 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSH---------ADPVIAVFD- 124
+R++ +D L Y SRP + S G+ S + + D + VFD
Sbjct: 2 QRLYLIDAMALAYRAHYVFISRPLVNSKGQNTSAAYGFTTSLLKLIEEHGMDYMAVVFDA 61
Query: 125 -GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
GE GT R + YKAHR L A+ +I +++ ++PV++
Sbjct: 62 GGEEGT-FREAIYEEYKAHREPPPEDLLANL-----------PWIKEIVRALDIPVIEEP 109
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADDVI TL + G V+ SPDKDF QL+S + + P + + + T++ +
Sbjct: 110 GVEADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFR 169
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
Y +PH + + ++GD D VPG VPG G KTA++L++++GS+ENLL A
Sbjct: 170 ETYGLEPHQFIDVLALMGDPSDNVPG----VPGIGEKTAVQLIQQYGSVENLL--AHAEE 223
Query: 304 VGRDYAQEALTKH 316
V A+E L H
Sbjct: 224 VKGKRAREGLLNH 236
>gi|423329673|ref|ZP_17307479.1| DNA polymerase I [Myroides odoratimimus CCUG 3837]
gi|404603301|gb|EKB02976.1| DNA polymerase I [Myroides odoratimimus CCUG 3837]
Length = 939
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+K R+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 NKNRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLIDVIKRESPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG++ R +L P YKA+R + + + + +I +L ++P+V++ G
Sbjct: 63 DRGGSDLRLELFPEYKANRDE-----------TPEAIKIAVPYIKQILEAMHIPIVEVNG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++G+ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 112 YEADDLIGTLSKQAEKEGFEVYMVTPDKDYAQLVSENIFMYRPARMGNGIEIWGVDQVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+ENLL
Sbjct: 172 KFEVDYPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFIKQYGSMENLL 220
>gi|423132365|ref|ZP_17120015.1| DNA polymerase I [Myroides odoratimimus CCUG 12901]
gi|371639436|gb|EHO05052.1| DNA polymerase I [Myroides odoratimimus CCUG 12901]
Length = 939
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+K R+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 NKNRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFMNSLIDVIKRESPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG++ R +L P YKA+R + + + + +I +L ++P+V++ G
Sbjct: 63 DRGGSDLRLELFPEYKANRDE-----------TPEAIKIAIPYIKQILEAMHIPIVEVSG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++G+ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 112 YEADDLIGTLSKQAEKEGFEVYMVTPDKDYAQLVSENIFMYRPARMGNGIEIWGVDQVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+ENLL
Sbjct: 172 KFEVDYPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFIKQYGSMENLL 220
>gi|373111034|ref|ZP_09525294.1| DNA polymerase I [Myroides odoratimimus CCUG 10230]
gi|371641095|gb|EHO06682.1| DNA polymerase I [Myroides odoratimimus CCUG 10230]
Length = 939
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+K R+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 NKNRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFMNSLIDVIKRESPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG++ R +L P YKA+R + + + + +I +L ++P+V++ G
Sbjct: 63 DRGGSDLRLELFPEYKANRDE-----------TPEAIKIAVPYIKQILEAMHIPIVEVSG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++G+ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 112 YEADDLIGTLSKQAEKEGFEVYMVTPDKDYAQLVSENIFMYRPARMGNGIEIWGVDQVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+ENLL
Sbjct: 172 KFEVDYPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFIKQYGSMENLL 220
>gi|423135955|ref|ZP_17123600.1| DNA polymerase I [Myroides odoratimimus CIP 101113]
gi|371639690|gb|EHO05305.1| DNA polymerase I [Myroides odoratimimus CIP 101113]
Length = 939
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+K R+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 NKNRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFMNSLIDVIKRESPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG++ R +L P YKA+R + + + + +I +L ++P+V++ G
Sbjct: 63 DRGGSDLRLELFPEYKANRDE-----------TPEAIKIAVPYIKQILEAMHIPIVEVSG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++G+ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 112 YEADDLIGTLSKQAEKEGFEVYMVTPDKDYAQLVSENIFMYRPARMGNGIEIWGVDQVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+ENLL
Sbjct: 172 KFEVDYPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFIKQYGSMENLL 220
>gi|15606735|ref|NP_214115.1| DNA polymerase I [Aquifex aeolicus VF5]
gi|17366200|sp|O67550.1|EX53_AQUAE RecName: Full=5'-3' exonuclease
gi|2983968|gb|AAC07515.1| DNA polymerase I 3'-5' exo domain [Aquifex aeolicus VF5]
Length = 289
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 23/215 (10%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKA 141
F + PL P+ +G +L + F + P ++ VFD T+ R ++ YK
Sbjct: 17 FFALPPLSTSKGFPTNAIYG-FLRMLFSLIKKERPQYLVVVFDAPAKTK-REKIYADYKK 74
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
R K L I ++L +P++++ G+EADDVIA L + QK
Sbjct: 75 QRPKAPDPLKVQ-----------IPVIKEILKLAGIPLLELPGYEADDVIAYLAEKFSQK 123
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
G++ + SPDKD QL+SE+V ++ P+ D +T + I ++ +P +VG
Sbjct: 124 GFKVKIYSPDKDLLQLVSENVLVINPMND----EVFTKERVIKKFGVEPQKIPDYLALVG 179
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
D VD VPGI+ G G KTA+ +LKK+GS+EN+L
Sbjct: 180 DKVDNVPGIE----GVGPKTAINILKKYGSVENIL 210
>gi|402831747|ref|ZP_10880421.1| DNA-directed DNA polymerase [Capnocytophaga sp. CM59]
gi|402280932|gb|EJU29631.1| DNA-directed DNA polymerase [Capnocytophaga sp. CM59]
Length = 928
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 35/234 (14%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP-VIAVFDGE 126
K++F LD L + G P + S G +++ + + P ++AV +
Sbjct: 2 KKLFLLDAYALIFRGYYAFIKNPRINSKGMNTSAIVGFMNSLLEVIRKEQPHLLAVCFDK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG++ R + P YKA+R + + R + HQ +L +P+++ EG+E
Sbjct: 62 GGSQQRTAIYPEYKANREE-------TPEAIRLAIPYIHQ----ILEAMRIPIIEKEGYE 110
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLK-HY 242
ADD+I TL Q ++GY + +PDKD+ QL+S + + P + +++ W +K ++
Sbjct: 111 ADDIIGTLSKQAEKQGYTVYMVTPDKDYSQLVSPHIFMYKPARGGNEVEIWGVEEVKENF 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+Y P + L ++GD VD +PG+ PG G KTA KLLK+ GSLENLL
Sbjct: 171 QVEY---PEQVIDLLGMMGDAVDNIPGL----PGVGEKTAQKLLKEFGSLENLL 217
>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
Length = 870
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 32/256 (12%)
Query: 79 KKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFDG 125
KK+++ LD L + + P L + F R L D+ D + FD
Sbjct: 2 KKKLYLLDGQSLAHRAFYALPLLSTSRGEYTNAVFGFTRMLLKLLDE-EKPDLIAVAFDK 60
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ T R + YKAHR+K +L I +VL ++P+++IEG
Sbjct: 61 KAPT-FRHKEYKEYKAHRKKMPEELKPQL-----------SLIKEVLKSFSIPIIEIEGF 108
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I T+ + ++G+ V+ + D+D QL++EDV ++ + + Y L +
Sbjct: 109 EADDIIGTMARKGEEEGFEVVIVTGDRDALQLVTEDVSVMYTKRGISDIVRYDLNKVRER 168
Query: 246 YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVG 305
Y +P + ++ ++GD D +PG VPG G KTA+KLLK+ SLE +L+ + V
Sbjct: 169 YELEPQQLIDMKGLMGDSSDNIPG----VPGIGEKTAIKLLKEFSSLEEILD--NIDKVS 222
Query: 306 RDYAQEALTKHADYLR 321
+E L K+AD R
Sbjct: 223 GKKRKENLQKYADQAR 238
>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
Length = 950
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
S+KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 2 SQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLMDVIKREKPDHLAVAF 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+++R ++ YKAHR + + + + +I ++L ++P+++ G
Sbjct: 62 DKGGSDYRFEMYQEYKAHRVE-----------TPEAIKIAVPYIQELLRAMHIPIIEKAG 110
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++G++ + +PDKDF QL+SE++ + P + + + + +A
Sbjct: 111 FEADDLIGTLAKQAEKEGFKVFMVTPDKDFAQLVSENIFMYKPARMGNDIEIWGVPEVLA 170
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K L ++G+LENLL
Sbjct: 171 KFEIERPDQVIDFLGMMGDSADNIPGL----PGVGEKTAKKFLAEYGTLENLL 219
>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 929
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 35/234 (14%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP-VIAVFDGE 126
K++F LD L + G P + S G +++ + + P ++AV +
Sbjct: 2 KKLFLLDAYALIFRGYYAFIKNPRINSKGMNTSAIVGFMNSLLEVIRKEQPHLLAVCFDK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG++ R + YKA+R + + RF+ + HQ +L +P+++ EG+E
Sbjct: 62 GGSQQRLAIFDQYKANRE----ETPEAIRFA---IPYIHQ----ILKAMQIPIIEKEGYE 110
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL---QDLDRWSFYTLKHYI 243
ADD+I TL Q ++GY + +PDKD+ QL+S ++ + P +D + W +K
Sbjct: 111 ADDIIGTLAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKE-- 168
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ D P + L ++GD VD +PG+ PG G KTA KLLK+ GS+ENLL
Sbjct: 169 -NFGVDTPEQVIDLLGMMGDAVDNIPGL----PGVGEKTAQKLLKEFGSMENLL 217
>gi|381187190|ref|ZP_09894755.1| DNA polymerase I [Flavobacterium frigoris PS1]
gi|379650800|gb|EIA09370.1| DNA polymerase I [Flavobacterium frigoris PS1]
Length = 946
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFD 124
+KR+F LD L + G P + S G +++ D + P + FD
Sbjct: 4 QKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLMDVIKREKPDHLAVAFD 63
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG++ R ++ P YKAHR + + + +I D+L ++P+++++G
Sbjct: 64 N-GGSQLRNEIFPEYKAHRDA-----------TPEAIKIAVPYIQDLLRAMHIPIIEVKG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I T+ Q ++ Y+ + +PDKDF QL+SE++ + P + + + + +
Sbjct: 112 YEADDLIGTIAKQAEKENYKVFMVTPDKDFAQLVSENIFMYKPARMGNGIEIWGVPEVLK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G TA K LK+ G++ENLL
Sbjct: 172 KFEIERPDQVIDFLGMMGDAADNIPGL----PGVGEVTAKKFLKEFGTMENLL 220
>gi|429749608|ref|ZP_19282711.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429167545|gb|EKY09450.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 926
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 29/232 (12%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ FD + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFDVMKKERPHHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + R + HQ +L ++P+++ EG+
Sbjct: 62 KGGSVARTELFTDYKANREETPEAI-------RIAIPYIHQ----ILNALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL Q ++ + + +PDKD+ QL+S+++ + P ++ + + +K +
Sbjct: 111 EADDIIGTLAKQAEKQDFEVYMVTPDKDYAQLVSDNIFMYRPARNGNEVEIWGVKEVQEK 170
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ +P + ++GD VD +PG+ PG G KTA KLL GSLENLL
Sbjct: 171 FEVQNPLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSLENLL 218
>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 929
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ FD + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFDVMKKERPHHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + R + HQ +L ++P+++ EG+
Sbjct: 62 KGGSVARTELFADYKANREETPEAI-------RIAIPYIHQ----ILNALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLAKQAEKQDYQVYMVTPDKDYAQLVSDNIFMYRPPRGGNDIEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GSLENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSLENLL 218
>gi|302808413|ref|XP_002985901.1| hypothetical protein SELMODRAFT_424808 [Selaginella moellendorffii]
gi|300146408|gb|EFJ13078.1| hypothetical protein SELMODRAFT_424808 [Selaginella moellendorffii]
Length = 472
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 26/157 (16%)
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ EADDV+ TL QV + + D+ K ++ +++ S + +
Sbjct: 193 VDNAEADDVVTTLARQVTDRSLKT-----DRSLKAVLHPRIKI----------SSSSFRK 237
Query: 242 YIAQYNCDPHSELS-------LRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
I N + L+ RC++GD DG PG VPGFGRKTALKL++KHGSLEN
Sbjct: 238 TITLNNTNASLGLNWDFVYIQFRCLLGDAADGGPG----VPGFGRKTALKLMRKHGSLEN 293
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L+AAA+R VG+ Y Q+AL +H+ L +N EVL+LRR
Sbjct: 294 ILSAAAIRAVGKPYIQDALKEHSVLLEKNMEVLSLRR 330
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 7/68 (10%)
Query: 264 VDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
DGVPG VPGF TALKL++KHGSLENL++AAA+RTV + Y Q+AL +H+ L +N
Sbjct: 41 ADGVPG----VPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKN 93
Query: 324 YEVLALRR 331
EVL+LRR
Sbjct: 94 LEVLSLRR 101
>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
Length = 912
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA+R K + +G+V + DVL +P
Sbjct: 76 VAAAFDVSRQT-FRAEAFPEYKANRSKTPDEF-------KGQV----EITKDVLAAMGIP 123
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG EADDVIATL Q GYR +V + D+D QL++EDV ++ P + + + +T
Sbjct: 124 VMAIEGFEADDVIATLTTQATALGYRVLVVTGDRDSLQLVTEDVTVLYPRKGVSDLTRFT 183
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + GD D +PGI PG G KTA K ++++GSLENL+N
Sbjct: 184 PAAVEEKYGLTPQQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLENLVN 238
>gi|302808415|ref|XP_002985902.1| hypothetical protein SELMODRAFT_424811 [Selaginella moellendorffii]
gi|300146409|gb|EFJ13079.1| hypothetical protein SELMODRAFT_424811 [Selaginella moellendorffii]
Length = 443
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 26/157 (16%)
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ EADDV+ TL QV + + D+ K ++ +++ S + +
Sbjct: 164 VDNAEADDVVTTLARQVTDRSLKT-----DRSLKAVLHPRIKI----------SSSSFRK 208
Query: 242 YIAQYNCDPHSELS-------LRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
I N + L+ RC++GD DG PG VPGFGRKTALKL++KHGSLEN
Sbjct: 209 TITLNNTNASLGLNWDFVYIQFRCLLGDAADGGPG----VPGFGRKTALKLMRKHGSLEN 264
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L+AAA+R VG+ Y Q+AL +H+ L +N EVL+LRR
Sbjct: 265 ILSAAAIRAVGKPYRQDALKEHSVLLEKNMEVLSLRR 301
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 7/68 (10%)
Query: 264 VDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
DGVPG VPGF TALKL++KHGSLENL++AAA+RTV + Y Q+AL +H+ L +N
Sbjct: 41 ADGVPG----VPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKN 93
Query: 324 YEVLALRR 331
EVL+LRR
Sbjct: 94 LEVLSLRR 101
>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
Length = 945
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 EQKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLLDVIRREKPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R +L P YKA+R A+ R V +I D+L ++PVV +EG
Sbjct: 63 DKGGSAERTELFPEYKANR-------DATPDAIRIAV----PYIQDILKAMHIPVVVLEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++ Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 WEADDIIGTLAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYKPARMGNGIEIWGIPEIQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K +++ GS+ENLL
Sbjct: 172 RFGVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIEEFGSMENLL 220
>gi|384097731|ref|ZP_09998851.1| DNA polymerase I [Imtechella halotolerans K1]
gi|383836613|gb|EID76020.1| DNA polymerase I [Imtechella halotolerans K1]
Length = 942
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
S+KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 2 SQKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAIMGFMNSLLDVIKREKPDHLAVAF 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+E R ++ +YKA+R + + + + +I ++L ++PV+++ G
Sbjct: 62 DKGGSEARLEMFEAYKANRDE-----------TPEAIKIAVPYIQEILKAMHIPVIEMSG 110
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++GY + +PDKDF QL+SE++ + P + + + +
Sbjct: 111 YEADDIIGTLSKQAEKQGYITYMVTPDKDFAQLVSENIFVYRPARMGNGIEIWGIPEVQE 170
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++GD VD +PG PG G KTA KL+ + G++ENLL
Sbjct: 171 KFEVSHPEQVIDYLGMMGDAVDNIPGF----PGVGEKTAKKLIAEFGNMENLL 219
>gi|399927722|ref|ZP_10785080.1| DNA polymerase I [Myroides injenensis M09-0166]
Length = 938
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 31/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVF 123
+KKR+F LD L + G P + S G +++ D + P + F
Sbjct: 3 NKKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFMNSLLDVIKREQPDHLAVAF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D GG+ R + P YKA+R + + + + +I ++L ++P+++ +
Sbjct: 63 DN-GGSADRVAIFPEYKANRDE-----------TPEAIKIAVPYIKEILKAMHIPIIEQK 110
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+I TL Q ++G+ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 111 GFEADDLIGTLSKQAEKEGFSVYMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGVDQVK 170
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+ENLL
Sbjct: 171 EKFEVDEPEQVIDYLGMMGDAVDNIPGL----PGVGEKTAKKFIKQYGSMENLL 220
>gi|429752583|ref|ZP_19285433.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429176351|gb|EKY17736.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 889
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ F+ + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVARTELFTDYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q + Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEAQDYQVFMVTPDKDYAQLVSDNIFMYRPARSGNDIEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQMIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
Length = 942
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADP--VIAVFD 124
+KR+F LD L + G P + S G + + FD + P + FD
Sbjct: 4 QKRLFLLDAYALIFRGYYAFIKNPRINSKGFNTSAIMGFTNSLFDVIRREKPDHLAVCFD 63
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+G E R ++ YKA+R + + + + I D+L ++PVV+ G
Sbjct: 64 KDGSKE-RTEMFAEYKANRDE-----------TPEPIREAIPIIQDILKAMHIPVVECAG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++ Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 MEADDIIGTLAKQAEKENYKVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G KTA K LKK+GS+E LL
Sbjct: 172 KFEVERPEQVIDFLGMMGDSVDNIPGL----PGVGEKTAKKFLKKYGSMEALL 220
>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
Length = 912
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA+R K + +G+V + DVL +P
Sbjct: 76 VAAAFDVSRQT-FRAEAFPEYKANRSKTPDEF-------KGQV----EITKDVLAAMGIP 123
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG EADDVIATL Q GYR +V + D+D QL+++DV ++ P + + + +T
Sbjct: 124 VMAIEGFEADDVIATLTTQATALGYRVLVVTGDRDSLQLVTDDVTVLYPRKGVSDLARFT 183
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + GD D +PGI PG G KTA K ++++GSLENL+N
Sbjct: 184 PAAVEEKYGLTPQQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLENLVN 238
>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
Length = 928
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ F+ + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVARTELFADYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q + Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEAQDYQVYMVTPDKDYAQLVSDNIFMYRPARSGNDIEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
Length = 984
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 30/268 (11%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHA-------DPVIAVFDG 125
+ R+F +D L Y RP S G S+ + S P + +
Sbjct: 8 TAPRLFLIDGYALIYRAFFALLQRPLSTSRGENTSIAWGIASFLKRLLNTHQPELLAWVH 67
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ G R +L P YKA R K L A F +G Q +L +L ++PV+ G
Sbjct: 68 DSGATFRDELYPDYKATREKLTDDLQAD--FDQG-----LQRVLQLLAAYDIPVLSAPGF 120
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ----DLDRWSFYTLKH 241
EADDVI T+ + ++ GY VV S DKDF+QL+ V L+ P + +D S+ +++
Sbjct: 121 EADDVIGTMAARGVEAGYNVVVVSGDKDFQQLVRPGVWLLNPGRGGPASVDE-SWVGVEN 179
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ P + IVGD D VPG++ G G K A++L+ ++G LEN+L A V
Sbjct: 180 GSDRLGVPPERVIDYLAIVGDTSDNVPGVK----GIGEKGAIELITQYGPLENIL--ANV 233
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +EAL ++AD R + +++ +
Sbjct: 234 ENITKKRPREALQQYADSARLSKQLVTI 261
>gi|420149430|ref|ZP_14656606.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 335 str.
F0486]
gi|394753653|gb|EJF37160.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 335 str.
F0486]
Length = 932
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ + + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVERTELFADYKANREE-----------TPEAIRLAIPYIHEILNALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|395803175|ref|ZP_10482425.1| DNA polymerase I [Flavobacterium sp. F52]
gi|395434709|gb|EJG00653.1| DNA polymerase I [Flavobacterium sp. F52]
Length = 945
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 TQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLLDVIKREKPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ YKA+R + + + + +I ++L ++P++++EG
Sbjct: 63 DKGGSHVRTEMFVEYKANRDE-----------TPEAIKIAVPYIQELLRAMHIPIIELEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I T+ Q ++ Y+ + +PDKDF QL+SE++ + P + + + + +A
Sbjct: 112 CEADDLIGTIAKQAEKQNYQVFMVTPDKDFAQLVSENIFMYKPARMGNGIEIWGVPEVLA 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G TA K LK+ GS+ENLL
Sbjct: 172 KFEVERPEQVIDFLGMMGDAVDNIPGL----PGVGEVTAKKFLKEFGSMENLL 220
>gi|385800354|ref|YP_005836758.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
Length = 880
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 32/270 (11%)
Query: 75 KTKSKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIA 121
+ K +K +F LD + L + + P L + FG ++ + F P +I
Sbjct: 5 ENKEQKTLFLLDGHSLTHRAFYALPLLTNDQGEYTNAVFG-FVRMLFSLTDEWQPDRMII 63
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
FD + T R Q P YK +R+K +L + + + K +P+V
Sbjct: 64 TFDKKEPT-FRHQEYPEYKGNRKKMPEELVPQ-----------INLLQETIKKLEIPMVS 111
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G+EADD++ TL Q +KGY+ + + D+D QL+SE+V ++ + + + +
Sbjct: 112 KVGYEADDLLGTLSKQAEKKGYKVYIVTGDRDALQLVSENVNILYTKKGISNLIKFDEEK 171
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ +Y P + + ++GD D +PG VPG G+KTALKLLK+ G++E +L A +
Sbjct: 172 VMEKYELTPEKLIDRKGLMGDSSDNIPG----VPGIGKKTALKLLKEFGTMEEIL--ANI 225
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALRR 331
V +E L K+ + R +Y + ++R
Sbjct: 226 DQVSGKKRKENLYKYTEQARLSYRLGKIKR 255
>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium hydrogeniformans]
gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium hydrogeniformans]
Length = 880
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 32/268 (11%)
Query: 77 KSKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVF 123
K KK +F LD + + + + P L + FG ++ + F +P +I F
Sbjct: 7 KDKKTLFLLDGHSITHRAFYALPLLTNDDGQYTNAVFG-FIRMLFSLTDEWNPDRMIVTF 65
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D + T R + YKA+R+K +L ++ Q L K +P++ E
Sbjct: 66 DKKAPT-FRHEEYEEYKANRKKMPEELVP-------QISLLQQ----TLAKLEIPIIAEE 113
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADD++ TL Q + Y + + D+D QL+SE+++++ + L Y L+
Sbjct: 114 GYEADDLLGTLSKQAAAQNYDVYIITGDRDALQLVSENIKVMYTRKGLSDLVIYDLEKIF 173
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S++ +LN +
Sbjct: 174 DKYEIPPEKLIDMKGLMGDSSDNIPG----VPGIGEKTAIKLLKQFDSIDEILN--NIDQ 227
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALRR 331
V +E L K D + +Y + ++R
Sbjct: 228 VSGKKRKENLKKFTDQAKMSYRLAKIKR 255
>gi|409098352|ref|ZP_11218376.1| DNA polymerase I [Pedobacter agri PB92]
Length = 925
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 17/179 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD E TE R +YKAHR+ L A+ +++ ++ N+P
Sbjct: 46 IAVVFDTEAPTE-RHTSFEAYKAHRQAMPEDLAAAM-----------PYVIKLITGFNIP 93
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G+EADD+I TL + KG++ +PDKDF QL+SE++ + P + +
Sbjct: 94 VITSDGYEADDIIGTLAKKAESKGFQVYCMTPDKDFAQLVSENIFIYKPARMGNDMEILG 153
Query: 239 LKHYIAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+K +A++ + + + + + GD VD +PGI PG G KTA L+K++GS+EN++
Sbjct: 154 VKEVLAKWEIENVLQVIDILGLWGDAVDNIPGI----PGIGEKTAKALIKQYGSMENII 208
>gi|393780401|ref|ZP_10368615.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 412 str.
F0487]
gi|392608502|gb|EIW91351.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 412 str.
F0487]
Length = 932
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ + + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVERTELFADYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|429747926|ref|ZP_19281159.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429161981|gb|EKY04340.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 932
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ + + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVERTELFADYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|340622493|ref|YP_004740945.1| DNA polymerase I [Capnocytophaga canimorsus Cc5]
gi|339902759|gb|AEK23838.1| DNA polymerase I [Capnocytophaga canimorsus Cc5]
Length = 918
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI--------AVFDG 125
KKR+F LD L + G P + S G S ++ VI AV
Sbjct: 3 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKERPDHLAVAFD 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R ++ +YKAHR + + + + +I ++L ++P++ EG
Sbjct: 63 KGGSVERTEMFQAYKAHREE-----------TPEAIRLAIPYIWEILQALHIPILVKEGF 111
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + ++GY + +PDKDF QL+SE++ + P + + + + +
Sbjct: 112 EADDIIGTLAKKAEKQGYLVYMVTPDKDFAQLVSENIFMYRPSRSGNDAEIWGVPEVQEK 171
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ P + ++GD D +PG+ PG G KTA KLL GSLENLL+
Sbjct: 172 FGVQTPEQVIDFLGMMGDTADNIPGL----PGVGEKTAKKLLADFGSLENLLS 220
>gi|372222155|ref|ZP_09500576.1| DNA polymerase I [Mesoflavibacter zeaxanthinifaciens S86]
Length = 944
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+KR+F LD L + G P + S G +++ FD + P +AV
Sbjct: 3 EQKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLFDVMRREQPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ YKA+R + + + + +I +L +PVV++EG
Sbjct: 63 DKGGSVERTEMFEEYKANRDE-----------TPEAIKIAVPYIQSILKAMKIPVVELEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++GY+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 YEADDLIGTLSKQAEKEGYKVFMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEVQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K L++ GS+E LL
Sbjct: 172 RFGVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFLEQFGSMEGLL 220
>gi|390953723|ref|YP_006417481.1| DNA polymerase I [Aequorivita sublithincola DSM 14238]
gi|390419709|gb|AFL80466.1| DNA polymerase I [Aequorivita sublithincola DSM 14238]
Length = 952
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 32/238 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
KKR+F +D L + G P + S G+ +++ D V P +AV
Sbjct: 3 EKKRLFLVDAYALIFRGYFALIKNPQINSKGQNTSAIMGFMNSLIDVVKRERPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+E R ++ P YKA+R + + R H I ++L +P++ EG
Sbjct: 63 DKGGSEARNEMFPDYKANRDETPDAI---------RFAIPH--IYNILEAMKIPIMVKEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHY 242
EADDVI TL + ++GY + +PDKDF QL+SE++ + P+ + W ++
Sbjct: 112 FEADDVIGTLAKKAEKEGYTTFMVTPDKDFAQLVSENIFMYRPVFGGGYETWGIPEVQKK 171
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
DP + ++GD D +PG+ PG G KTA K L + GS+E LL A
Sbjct: 172 FEV--KDPIQVIDFLGMMGDSSDNIPGL----PGVGEKTAKKFLAEFGSMEGLLANTA 223
>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
Length = 877
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 20/217 (9%)
Query: 117 DP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
DP ++ FD G T R + YK R+K +L S++F FI D+L
Sbjct: 50 DPSHILVAFDA-GKTTFRHKTFTEYKGGRQKTPPEL--SEQFP---------FIRDLLDA 97
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+P ++E +EADD+I TL Q Q+G+ V S DKD QL SE + + + +
Sbjct: 98 YQIPRYELENYEADDIIGTLSLQAEQEGFEVKVISGDKDLTQLSSEHTTVGITRKGITDI 157
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
YT +H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ +LEN
Sbjct: 158 EEYTPEHIREKYGLSPGQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKEFETLEN 213
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
LL ++ V +E L +H D + E+ + R
Sbjct: 214 LL--GSIDRVSGQKLKEKLEEHKDLAVMSKELATITR 248
>gi|379708302|ref|YP_005263507.1| DNA polymerase I [Nocardia cyriacigeorgica GUH-2]
gi|374845801|emb|CCF62871.1| DNA polymerase I [Nocardia cyriacigeorgica GUH-2]
Length = 887
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R + P YKA+R T++ RG+V + +VLG +P
Sbjct: 51 IAAAFDVSRQT-FRTEAYPEYKANR-------TSTPDEFRGQV----ELAKEVLGALGIP 98
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ I+G+EADDVIATL Q + +GYR ++ + D+D QL+++DV ++ P + + + +T
Sbjct: 99 VMAIDGYEADDVIATLTTQAVPQGYRVLIVTGDRDSIQLVNDDVTVLYPRKGVSDLTRFT 158
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ A+Y P + GD D +PGI PG G KTA K ++++G L L+
Sbjct: 159 PEEVQAKYGLSPAQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGDLATLV-- 212
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D E K D LR N + L R
Sbjct: 213 --------DKVDEVRGKVGDALRANLSSVVLNR 237
>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
gi|420159920|ref|ZP_14666715.1| DNA-directed DNA polymerase [Capnocytophaga ochracea str. Holt 25]
gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
gi|394761436|gb|EJF43802.1| DNA-directed DNA polymerase [Capnocytophaga ochracea str. Holt 25]
Length = 932
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ + + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVERTKLFADYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|407643687|ref|YP_006807446.1| DNA polymerase I [Nocardia brasiliensis ATCC 700358]
gi|407306571|gb|AFU00472.1| DNA polymerase I [Nocardia brasiliensis ATCC 700358]
Length = 887
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 25/200 (12%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R + P YKA+R + + RG+V + DVLG +PV+ IEG EADD+I
Sbjct: 63 RTEAYPEYKANRSQTPDEF-------RGQV----ELTKDVLGAMGIPVMAIEGFEADDII 111
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q + +G+R ++ S D+D QL++++V ++ P + + + +T A+Y P
Sbjct: 112 ATLTTQAVSEGFRVLIVSGDRDAIQLVNDNVTVLYPRKGVSDLTRFTPDEVFAKYQLTPS 171
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
+ GD D +PGI PG G KTA K ++++G L L+ D E
Sbjct: 172 QYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGDLNTLV----------DKVDE 217
Query: 312 ALTKHADYLRRNYEVLALRR 331
K D LR N + L R
Sbjct: 218 VKGKVGDALRANLSSVVLNR 237
>gi|386819635|ref|ZP_10106851.1| DNA polymerase I [Joostella marina DSM 19592]
gi|386424741|gb|EIJ38571.1| DNA polymerase I [Joostella marina DSM 19592]
Length = 943
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 EQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLLDVIKREQPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ +YKA+R + + R+ I D+L ++P + EG
Sbjct: 63 DKGGSVDRVEMFEAYKANRDETPEAI---------RIAVP--IIQDILKAMHIPCIVKEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q + Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 YEADDIIGTLAKQAEKANYKVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G KTA K LK+ GS+ENLL
Sbjct: 172 KFEIETPDQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFLKEFGSMENLL 220
>gi|441516236|ref|ZP_20997986.1| DNA polymerase I [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456822|dbj|GAC55947.1| DNA polymerase I [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 913
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 28/229 (12%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+ S+ + + DP + A FD T R ++ P YKA R ++S RG+V
Sbjct: 57 FTSMLINLLRDEDPSHIAAAFDVSRQT-FRSEMFPEYKAQR-------SSSPDEFRGQV- 107
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
DVL +PV+ IEG+EADDVIATL + ++GYR +V + D+D QL+++++
Sbjct: 108 ---DLTKDVLDAMGIPVMAIEGYEADDVIATLATRADEQGYRVLVVTGDRDALQLVNDNI 164
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P + + + +T + +Y P + GD D +PGI PG G KTA
Sbjct: 165 TVLYPKRGVSELTRFTPEEVEKKYGLTPGQYPDYAALRGDPSDNLPGI----PGVGEKTA 220
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
K ++++GS + L+N A E K D LR N + + R
Sbjct: 221 AKWIREYGSFDELVN----------RADEVRGKVGDSLRENLAAVIMNR 259
>gi|340618331|ref|YP_004736784.1| DNA polymerase I [Zobellia galactanivorans]
gi|339733128|emb|CAZ96503.1| DNA polymerase I (POL I) [Zobellia galactanivorans]
Length = 943
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 29/232 (12%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
+KR+F LD L + G P + S G +++ FD + P +AV
Sbjct: 4 QKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLFDVIKREKPDHLAVCFD 63
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L P YKA+R + + + + +I ++L ++P V +EG
Sbjct: 64 KGGSAERTELFPEYKANRDE-----------TPDAIKIAIPYIQNILKAMHIPSVVLEGW 112
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL Q ++ Y+ + +PDKDF QL+SE++ + P + + + + +
Sbjct: 113 EADDIIGTLAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEIQKR 172
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + P + ++GD D +PG+ PG G KTA K +++ GS+E LL
Sbjct: 173 FGVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIEQFGSMEELL 220
>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
Length = 949
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVF 123
++KR+F LD L + G P + S G +++ D + P + F
Sbjct: 3 TQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLLDVIKREKPDHLAVAF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D EG + R ++ YKA+R + + + + +I ++L ++P++++
Sbjct: 63 DKEG-SRARTEMFAEYKANRDE-----------TPEAIKIAVPYIQELLKAMHIPIIELA 110
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+I T+ Q ++ Y+ + +PDKDF QL+SE++ + P + + + + +
Sbjct: 111 GCEADDLIGTIAKQAEKQNYKVYMVTPDKDFAQLVSENIFMYKPARMGNGIEIWGVPEVL 170
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A++ + P + ++GD VD +PG+ PG G TA K LK+ GS+ENLL
Sbjct: 171 AKFEVERPEQVIDFLGMMGDAVDNIPGL----PGVGEVTAKKFLKEFGSMENLL 220
>gi|429755862|ref|ZP_19288484.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172482|gb|EKY14044.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 932
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ + + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVGRTELFADYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y+ + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|374598916|ref|ZP_09671918.1| DNA polymerase I [Myroides odoratus DSM 2801]
gi|423322892|ref|ZP_17300734.1| DNA polymerase I [Myroides odoratimimus CIP 103059]
gi|373910386|gb|EHQ42235.1| DNA polymerase I [Myroides odoratus DSM 2801]
gi|404610119|gb|EKB09475.1| DNA polymerase I [Myroides odoratimimus CIP 103059]
Length = 935
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFD 124
+KR+F LD L + G P + S G +++ D + +P + FD
Sbjct: 4 QKRLFLLDAYALIFRGYYALIKNPRINSKGLDTSAILGFMNSLLDVIKRENPDHLAVAFD 63
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG++ R + P YKA+R + + + +I ++L ++P++++ G
Sbjct: 64 N-GGSKDRLAIFPEYKANRD-----------VTPEAIKIAVPYIKEILKAMHIPIIEVSG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I T+ Q ++ + + +PDKD+ QL+S+++ + P + + + ++
Sbjct: 112 FEADDLIGTISKQAEKEDFMVYMVTPDKDYAQLVSDNIVMYRPARMGNGIEIWDVERVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+ENLL
Sbjct: 172 KFEVDHPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFIKEYGSMENLL 220
>gi|345867510|ref|ZP_08819521.1| DNA polymerase I family protein [Bizionia argentinensis JUB59]
gi|344048178|gb|EGV43791.1| DNA polymerase I family protein [Bizionia argentinensis JUB59]
Length = 946
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 29/232 (12%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F +D L + G P + S G +++ D + P +AV
Sbjct: 4 KKRLFLVDAYALIFRGYYAFIKNPRINSKGTDTSAIMGFMNSLLDVIKRERPDHLAVCFD 63
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R ++ YKA+R + + + + +IL++L ++P++ EG
Sbjct: 64 KGGSADRVEMFEEYKANRDE-----------TPEGIKVAVPYILEILKAMHIPIMVKEGF 112
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL Q ++GY+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 113 EADDVIGTLAKQAEKEGYQTFMVTPDKDFAQLVSENIFMYRPKSFGGGYEVWGIPEVQKK 172
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + P + ++GD D +PG+ PG G KTA K +K +GS+E LL
Sbjct: 173 FEVERPEQVIDFLGMMGDASDNIPGL----PGVGEKTAKKFIKAYGSMEGLL 220
>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
Length = 932
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 33/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F LD L + G P + S G +++ + + P +AV
Sbjct: 2 KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPDHLAVAFD 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R +L YKA+R + + + + +I ++L ++P+++ EG+
Sbjct: 62 KGGSVERTELFADYKANREE-----------TPEAIRLAIPYIHEILKALHIPIIEKEGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHY 242
EADD+I TL Q ++ Y + +PDKD+ QL+S+++ + P + D++ W ++
Sbjct: 111 EADDIIGTLSKQAEKQNYLVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEK 170
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD VD +PG+ PG G KTA KLL GS+ENLL
Sbjct: 171 FEVQN--PLQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKLLADFGSMENLL 218
>gi|399026928|ref|ZP_10728566.1| DNA polymerase I [Flavobacterium sp. CF136]
gi|398075692|gb|EJL66798.1| DNA polymerase I [Flavobacterium sp. CF136]
Length = 947
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G +++ D + P +AV
Sbjct: 3 TQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLLDVIKREKPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ YKA+R + + + +I D+L ++P+++ G
Sbjct: 63 DKGGSHVRTEMYTEYKANRDA-----------TPEAIKIAIPYIQDLLNAMHIPIIEANG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I T+ Q ++ Y+ + +PDKDF QL+SE++ + P + + + + +A
Sbjct: 112 CEADDLIGTIAKQAEKENYKVYMVTPDKDFAQLVSENIFMYKPARMGNGIEIWGVPEVLA 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G TA K LK+ G++ENLL
Sbjct: 172 KFEIERPEQVIDFLGMMGDAVDNIPGL----PGVGEVTAKKFLKEFGTMENLL 220
>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
Length = 941
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 31/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADP--VIAVF 123
++KR+F +D L + G P + S G +++ FD + P + F
Sbjct: 3 AQKRLFLVDAYALIFRGYYAFIKNPRINSKGFDTSAIMGFMNSLFDVIRREKPDHLAVCF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D EG +E R +L YKA+R + + + +I +L ++PVV++
Sbjct: 63 DKEG-SEVRTELFSDYKANRDA-----------TPEPIMQGIPYIQSILKAMHIPVVELP 110
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+I TL Q ++ Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 111 GCEADDIIGTLAKQAEKENYQVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQ 170
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G KTA K LK+ GS+E LL
Sbjct: 171 KKFEVERPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFLKQFGSMEELL 220
>gi|373955502|ref|ZP_09615462.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
gi|373892102|gb|EHQ27999.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
Length = 936
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 17/176 (9%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD E TE + +YKAHR L+ ++ +I ++ N+PV+
Sbjct: 58 VFDTEAPTERHTDFV-AYKAHREAMPEDLS-----------KALPYIFKLILGFNIPVIT 105
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+G EADD+I TL + QKGY+ +PDKDF QL+S+++ + P + + +K
Sbjct: 106 SDGFEADDIIGTLAKKAEQKGYKVYCMTPDKDFAQLVSDNIFIYKPARMGNDMEILGVKE 165
Query: 242 YIAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+A++ + + + + + GD VD +PGI PG G KTA L+K++GS+EN++
Sbjct: 166 VLAKWEVERVEQVIDILGLWGDAVDNIPGI----PGVGEKTAKSLIKQYGSMENII 217
>gi|372210229|ref|ZP_09498031.1| DNA polymerase I [Flavobacteriaceae bacterium S85]
Length = 935
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP-VIAVFD 124
S+KR+F LD L + G P + S G + + D + P ++AV
Sbjct: 3 SEKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAILGFTNSLLDVIKREQPQLLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R + +YKA+R++ + + + +I +L N+P+++ EG
Sbjct: 63 DKGGSVSRTESFEAYKANRQE-----------TPEAIKIAVPYIQQILRAMNIPIIEKEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++G + + +PDKD+ QL+SE++ + P + + + +
Sbjct: 112 FEADDLIGTLAKQAEKEGCQVYMVTPDKDYAQLVSENIFMYRPARMGNGIEIWNVDKVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ D P + ++GD VD +PG+ PG G KTA K +K++GS+E LL
Sbjct: 172 KFEVDTPLQVIDYLGMMGDAVDNIPGL----PGVGDKTAKKFIKQYGSMEGLL 220
>gi|441520451|ref|ZP_21002118.1| DNA polymerase I [Gordonia sihwensis NBRC 108236]
gi|441459897|dbj|GAC60079.1| DNA polymerase I [Gordonia sihwensis NBRC 108236]
Length = 923
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 28/229 (12%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+ S+ + + +P + A FD T R ++ P YKA R ++S RG+V
Sbjct: 61 FTSMLINLLRDEEPSHIAAAFDVSRQT-FRSEMFPEYKAQR-------SSSPDEFRGQV- 111
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
DVL +PV+ IEG+EADD+IATL ++GYR +V + D+D QL++E++
Sbjct: 112 ---DLTKDVLDAMGIPVMAIEGYEADDIIATLATAADRQGYRVLVVTGDRDSLQLVNENI 168
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P + + + +T + +Y P + GD D +PGI PG G KTA
Sbjct: 169 TVLYPKRGVSELTRFTPEEVEKKYGLTPSQYPDFAALRGDPSDNLPGI----PGVGEKTA 224
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
K ++++GS E L+N A E K D LR N + + R
Sbjct: 225 AKWIREYGSFEELVN----------RADEVRGKVGDSLRANLAGVIMNR 263
>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
Length = 944
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+KR+F LD L + G P + S G + + FD + P +AV
Sbjct: 3 EQKRLFLLDAFALIFRGYYALIKNPRINSKGMDTSAIMGFTNSLFDVIKREKPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ P YKA+R + + + + FI ++L ++PVV EG
Sbjct: 63 DKGGSVERTEMFPEYKANRLE-----------TPDAIKIAVPFIQEILKAMHIPVVVQEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++ Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 WEADDIIGTLAKQAEKEDYKVYMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEIQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K + ++GS+E LL
Sbjct: 172 RFGVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFINEYGSMEGLL 220
>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
Length = 956
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G +++ FD + P +AV
Sbjct: 8 TQKRLFLLDAYALIFRGYYALIKNPRVNSKGMDTSAIMGFMNSLFDVIKREKPDHLAVAF 67
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ YKA+R + + + + +I +L +VP ++IEG
Sbjct: 68 DKGGSSDRVEMYEDYKANRDE-----------TPDAIKIAVPYIQSILKAMHVPCIEIEG 116
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++GY+ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 117 VEADDLIGTLSKQAEKEGYQVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQK 176
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K +K++G LE LL
Sbjct: 177 KFEVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIKQYGGLEGLL 225
>gi|336171826|ref|YP_004578964.1| DNA polymerase I [Lacinutrix sp. 5H-3-7-4]
gi|334726398|gb|AEH00536.1| DNA polymerase I [Lacinutrix sp. 5H-3-7-4]
Length = 953
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 32/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP-VIAVFDGE 126
KRVF +D L + G P + S G+ +++ D + P ++AV +
Sbjct: 5 KRVFLVDAYALIFRGYYAFIKNPRINSKGQDTSAIMGFMNSLLDVIKRERPNLLAVCFDK 64
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG+ R ++ YKA+R + + + + +I +L ++P++ EG E
Sbjct: 65 GGSTDRVEMFEEYKANRDE-----------TPEGIKTAIPYICQILEAMHIPIMVKEGFE 113
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHYIA 244
ADDVI TL Q ++GY+ + +PDKDF QL+SE++ + P+ + W ++
Sbjct: 114 ADDVIGTLAKQAEKEGYQTFMVTPDKDFAQLVSENIFMYRPVFGGGYETWGIPEVQKKFE 173
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
DP + ++GD D +PG+ PG G KTA K L +GS+ENL
Sbjct: 174 V--TDPLQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFLAAYGSMENLF 219
>gi|453363498|dbj|GAC80791.1| DNA polymerase I [Gordonia malaquae NBRC 108250]
Length = 887
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + RG+V DVLG +P
Sbjct: 51 IAAAFDVSRQT-FRSEMFPEYKAQRSKSPDEF-------RGQV----DLTKDVLGAMGIP 98
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ I+G EADD+I TL Q Q+GYR +V + D+D QL+++++ ++ P + + + +T
Sbjct: 99 VMAIDGFEADDIIGTLATQADQQGYRVLVVTGDRDSLQLVNDNITVLYPKRGVSEMTRFT 158
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + GD D +PGI PG G KTA K ++++GS + L+N
Sbjct: 159 PDEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSFDELVN- 213
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A E K D LR N + + R
Sbjct: 214 ---------RADEVKGKVGDSLRANLAGVIMNR 237
>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
Length = 949
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 32/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
KKR+F +D L + G P + S G +++ F D + P +AV
Sbjct: 5 KKRLFLIDAFALIFRGYYALIKNPRINSKGMDTSAIMGFMNSFLDVIKKERPDHLAVCFD 64
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R ++ +YKA+R + + + + +I +L VP++ EG+
Sbjct: 65 KGGSAARNEMFEAYKANRDE-----------TPDGIKIAIPYIYKILEAMQVPIMVKEGY 113
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHYI 243
EADDVI TL Q + GY + +PDKDF QL+SE++ + P+ + W ++
Sbjct: 114 EADDVIGTLSKQAEKAGYTTFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPQVQKRF 173
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
N P + ++GD D +PG+ PG G KTA K +K+ GS+E LL
Sbjct: 174 EVEN--PLQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIKQFGSMEGLL 220
>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
Length = 949
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 39/267 (14%)
Query: 82 VFFLDVNPLCYEG-----SRPSLQSFGR-----------WLSLFFDQ-VSHADPVIAVFD 124
++ +D L Y SRP + S G+ L L D + HA VFD
Sbjct: 36 LYLIDAMSLAYRAHYIFISRPLINSKGQNTSAAYGFTNSLLKLIEDHDIEHA---AVVFD 92
Query: 125 -GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
GE T R+++ YKA+R +L + +I +++ ++PV+++
Sbjct: 93 EGEEDT-FRKEMYDDYKANRDPPPEELL-----------ENIPYIKEIVEGLDIPVLEVP 140
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADDVI L Q V+ SPDKDFKQL+S+ V + P + + T +
Sbjct: 141 GVEADDVIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIYKPAKGDQDFEIKTRDTFR 200
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y DP + + ++GD D VPG+ G G KTA KLL+++ S+ENL++ A +
Sbjct: 201 DEYGLDPAQFVDMLALMGDSSDNVPGVY----GIGEKTAQKLLREYHSVENLIDHADDLS 256
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALR 330
R A+E + +HA+ R + ++ +R
Sbjct: 257 GKR--AREGMQEHAEEARLSKRLVRIR 281
>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
Length = 943
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 34/235 (14%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G + + D + P +AV
Sbjct: 3 AQKRLFLLDAYALIFRGYYAFIKNPRINSKGFDTSAILGFTNSLLDVIKRERPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GG+ R ++ P YKA+R++ +T + +I +L +PV+ EG
Sbjct: 63 DRGGSVDRVEVFPEYKANRQETPEPITLA-----------IPYIESILKAMKIPVIVKEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHY 242
+EADD+I TL + ++GY+ + +PDKDF QL+SE++ + P + W ++
Sbjct: 112 YEADDIIGTLSKKAEKEGYQTFMVTPDKDFAQLVSENIFMYRPKFGGGYETWGITEVQE- 170
Query: 243 IAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G KTA K L +GS+E LL
Sbjct: 171 --KFGVERPEQVIDFLGMMGDSVDNIPGL----PGVGEKTAKKFLAAYGSMEGLL 219
>gi|406667470|ref|ZP_11075227.1| DNA polymerase I [Bacillus isronensis B3W22]
gi|405384674|gb|EKB44116.1| DNA polymerase I [Bacillus isronensis B3W22]
Length = 876
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 30/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQ---------SFGRWLSLFFDQVSHADP--VIAVFD 124
+K+++ LD N L Y + P L ++G + ++ + +P ++ FD
Sbjct: 2 TKQKLLLLDGNSLAYRAFFALPLLTNDSGIHTNATYG-FTTMLQKIIGEENPTQMLVAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YK R+K +L S++F +I ++ N+ ++E
Sbjct: 61 A-GKTTFRHESFGEYKGGRQKTPPEL--SEQFP---------YIRKLIDAYNIKRYELEM 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q +G +V S DKD QL +EDV + + + + YT H
Sbjct: 109 YEADDIIGTLAKQAAGQGIEVIVVSGDKDLTQLATEDVTVYITRKGITDIEKYTPAHIEE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + ++ ++GD D +PG VPG G KTA+KLLK+HG++E L A
Sbjct: 169 KYGLTPEQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLKEHGTIEKLYEA 218
>gi|408491392|ref|YP_006867761.1| DNA polymerase I PolA [Psychroflexus torquis ATCC 700755]
gi|408468667|gb|AFU69011.1| DNA polymerase I PolA [Psychroflexus torquis ATCC 700755]
Length = 942
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 35/236 (14%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
SKKR+F +D + + G P + S G+ +++ FD + +P +AV
Sbjct: 3 SKKRLFLVDAYAMIFRGYYALIKNPRINSKGQDTSAIMGFMNSLFDVIKRENPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ G++ R+++ YKA+R + + S I D+L +PVV+I G
Sbjct: 63 DKDGSKDRKEMYVEYKANRDA-----------TPTVIKDSIPIIQDILHAMEIPVVEISG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKH 241
EADD+I TL Q ++ Y + +PDKDF QL++E++ + P + +++W ++
Sbjct: 112 MEADDIIGTLAIQAEKQNYEVHMVTPDKDFAQLVTENIFMQRPARMGNGVEKWGIPEVQK 171
Query: 242 YIAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K L++ GS+E LL
Sbjct: 172 ---KFGVERPEQVIDFLGMMGDAADNIPGL----PGVGEKTAKKFLQQFGSMEVLL 220
>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
Length = 926
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 39/267 (14%)
Query: 82 VFFLDVNPLCYEG-----SRPSLQSFGR-----------WLSLFFDQ-VSHADPVIAVFD 124
++ +D L Y SRP + S G+ L L D + HA VFD
Sbjct: 13 LYLIDAMSLAYRAHYIFISRPLINSKGQNTSAAYGFTNSLLKLIEDHDIEHA---AVVFD 69
Query: 125 -GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
GE T R+++ YKA+R +L + +I +++ ++PV+++
Sbjct: 70 EGEEDT-FRKEMYDDYKANRDPPPEELL-----------ENIPYIKEIVEGLDIPVLEVP 117
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADDVI L Q V+ SPDKDFKQL+S+ V + P + + T +
Sbjct: 118 GVEADDVIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIYKPAKGDQDFEIKTGDTFR 177
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y DP + + ++GD D VPG+ G G KTA KLL+++ S+ENL++ A +
Sbjct: 178 DEYGLDPAQFVDMLALMGDSSDNVPGVY----GIGEKTAQKLLREYHSVENLIDHADDLS 233
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALR 330
R A+E + +HA+ R + ++ +R
Sbjct: 234 GKR--AREGMQEHAEEARLSKRLVRIR 258
>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
Length = 897
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R + P YKA R K + RG+V + + +LD +G +P
Sbjct: 51 IAAAFDVSRQT-FRSDMFPEYKAQRSKSPDEF-------RGQVDLTKE-VLDAMG---IP 98
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ I+G+EADD+IATL Q+GYR V + D+D QL++E++ ++ P + + + +T
Sbjct: 99 VMAIDGYEADDIIATLATAADQQGYRVFVVTGDRDSLQLVNENITVLYPKRGVSEMTRFT 158
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + GD D +PGI PG G KTA K ++++GS E L+N
Sbjct: 159 PDEVEKKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSFEELVN- 213
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A E K D LR N + + R
Sbjct: 214 ---------RADEVRGKVGDSLRANLAGVIMNR 237
>gi|403388340|ref|ZP_10930397.1| DNA polymerase I [Clostridium sp. JC122]
Length = 874
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFD 124
SK+++ LD + L Y + P+L + F L D++ D ++A FD
Sbjct: 2 SKEKMLILDGHSLMYRAFYAMPNLSNSEGLFTGAIYGFSNMLFKMIDEI-EPDYIVATFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKI 182
T R + YKA R+ +L QF + D+L K + + ++
Sbjct: 61 RSKPT-FRHESFEEYKAGRKTMPDELRM-------------QFPIVKDMLNKMAINIFEL 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G EADD+I TL V ++G + + DKD QL +E++++V+ + + Y K
Sbjct: 107 DGFEADDLIGTLATYVEKEGMEVYIVTGDKDALQLATENIKVVINKKGVTEKEIYDEKRM 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
I +Y P + ++ ++GD D +PG VPG G KTA KL+K+ S+ENLL
Sbjct: 167 IEEYGVTPEEFIDVKGLMGDKSDNIPG----VPGIGEKTAFKLIKEFKSIENLL 216
>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
Length = 875
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 17/202 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R ++ YK R+K +L S++F F+ ++L N+
Sbjct: 54 ILVAFDA-GKTTFRHEVYTEYKGGRQKTPPEL--SEQFP---------FLRELLDAYNIR 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++G+ V+ S D+D QL SE + + + + + YT
Sbjct: 102 TYELENYEADDIIGTLATKAEKEGFDVVIISGDRDLTQLASERIHVHVTKKGITDMERYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
KH + +Y P + L+ ++GD D +PG VPG G KTALKLLK++G++E++L A
Sbjct: 162 PKHVLEKYGLTPAQIVDLKGLMGDASDNIPG----VPGVGEKTALKLLKEYGTVEHVL-A 216
Query: 299 AAVRTVGRDYAQEALTKHADYL 320
+ G+ + T H L
Sbjct: 217 SLEHISGKKLKENLQTYHEQAL 238
>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
Length = 946
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 34/235 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
+KR+F LD L + G P + S G + + D + P +AV
Sbjct: 4 QKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFTNSLLDVIKRERPDHLAVCFD 63
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
GG+ R ++ +YKA+R + + + +I ++L ++PVV EG+
Sbjct: 64 RGGSVDRVEMFEAYKANRDA-----------TPEAIKLAIPYIENILKAMHIPVVVKEGY 112
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHYI 243
EADD+I TL + ++ Y+ + +PDKDF QL+SE++ + P+ + W + +
Sbjct: 113 EADDIIGTLAKKAEKENYKVFMVTPDKDFAQLVSENIFMYRPMFGGGYETWG---IPEVL 169
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ + P + ++GD VD +PG+ PG G KTA K L +GS+ENLL+
Sbjct: 170 KKFEIERPEQVIDYLGMMGDSVDNIPGL----PGVGEKTAKKFLATYGSMENLLD 220
>gi|359425940|ref|ZP_09217030.1| DNA polymerase I [Gordonia amarae NBRC 15530]
gi|358238799|dbj|GAB06612.1| DNA polymerase I [Gordonia amarae NBRC 15530]
Length = 924
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R +L P YKA R K S G + DVLG +P
Sbjct: 83 IAAAFDVSRKT-FRSELFPEYKAQRSK-----------SPEEFGGQVELTKDVLGAMGIP 130
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ I+G+EADD+IATL Q ++G+ +V + D+D QL+ + V ++ P + + + +T
Sbjct: 131 VMAIDGYEADDIIATLATQAEERGFDVLVVTGDRDSLQLVDDAVTVLYPKRGVSELTRFT 190
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + + GD D +PG VPG G KTA K ++++GSL L+
Sbjct: 191 PEEVEKKYGVTPTQYPDIAALRGDSSDNLPG----VPGVGDKTAAKWIRQYGSLSELV-- 244
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRRY 332
D+ E K D LR N + R+
Sbjct: 245 --------DHVDEIKGKVGDSLRANLASVQTNRH 270
>gi|393199925|ref|YP_006461767.1| DNA polymerase I [Solibacillus silvestris StLB046]
gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
Length = 876
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 30/231 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQ---------SFGRWLSLFFDQVSHADP--VIAVFD 124
+K+++ LD N L Y + P L ++G + ++ + +P ++ FD
Sbjct: 2 TKQKLLLLDGNSLAYRAFFALPLLTNDSGIHTNATYG-FTTMLQKIIGEENPTQMLVAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YK R+K +L S++F +I ++ N+ ++E
Sbjct: 61 A-GKTTFRHESFGEYKGGRQKTPPEL--SEQFP---------YIRKLIDAYNIKRYELEM 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q +G +V S DKD QL +EDV + + + + YT H
Sbjct: 109 YEADDIIGTLAKQAAGQGIEVIVVSGDKDLTQLATEDVTVYITRKGITDIEKYTPAHIEE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+Y P + ++ ++GD D +PG VPG G KTA+KLLK+HG++E L
Sbjct: 169 KYGLTPEQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLKEHGTIEKL 215
>gi|374596617|ref|ZP_09669621.1| DNA polymerase I [Gillisia limnaea DSM 15749]
gi|373871256|gb|EHQ03254.1| DNA polymerase I [Gillisia limnaea DSM 15749]
Length = 941
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 29/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+KR+F LD L + G P + S G + + FD + P +AV
Sbjct: 3 EQKRLFLLDAYALIFRGYYAFIKNPQINSKGLNTSAIMGFTNSLFDVIRREKPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ YKA+R + + + +I D+L ++PVV + G
Sbjct: 63 DKGGSTERTEMFEDYKANRDA-----------TPEPIMTAIPYIQDILKAMHIPVVVLPG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADDVI TL Q ++ Y+ + +PDKDF QL++E++ + P + + +
Sbjct: 112 CEADDVIGTLAKQAEKEDYKVFMVTPDKDFAQLVTENIFMYRPARMGNGIEILGIPEVKE 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ + P + ++GD D +PG+ PG G KTA K LK+ GS+E LL+
Sbjct: 172 KFGVERPEQVIDFLGMMGDASDNIPGL----PGVGEKTAKKFLKQFGSMEELLS 221
>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
Length = 917
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 90 LCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFL 147
L P+ FG + S+ + ++ +P VI FD G R+QL YKAHR +
Sbjct: 30 LATSAGEPTHVVFG-FASMLLEVLNDFEPDYVIVCFDT--GRSFRQQLYEEYKAHRPETP 86
Query: 148 RQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVV 207
L + ++ R Q +LD LG +P+V EG+EADD+I TL + G ++
Sbjct: 87 DDL-------KHQLERIRQ-LLDALG---IPIVTREGYEADDLIGTLAARATANGLEVLI 135
Query: 208 ASPDKDFKQLISEDVQLVMP-LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ D D QL+ EDV++++P Q + Y + I +Y P + +VGD D
Sbjct: 136 VTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPERLPEYKALVGDPSDN 195
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+PG VPG G KTA +L+++ SLE +L+
Sbjct: 196 IPG----VPGIGEKTATRLIQRFSSLEEMLD 222
>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
Length = 917
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 90 LCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFL 147
L P+ FG + S+ + ++ +P VI FD G R+QL YKAHR +
Sbjct: 30 LATSAGEPTHVVFG-FASMLLEVLNDFEPDYVIVCFDT--GRSFRQQLYEEYKAHRPETP 86
Query: 148 RQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVV 207
L + ++ R Q +LD LG +P+V EG+EADD+I TL + G ++
Sbjct: 87 DDL-------KHQLERIRQ-LLDALG---IPIVTREGYEADDLIGTLAARATANGLEVLI 135
Query: 208 ASPDKDFKQLISEDVQLVMP-LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ D D QL+ EDV++++P Q + Y + I +Y P + +VGD D
Sbjct: 136 VTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPERLPEYKALVGDPSDN 195
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+PG VPG G KTA +L+++ SLE +L+
Sbjct: 196 IPG----VPGIGEKTATRLIQRFSSLEEMLD 222
>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
Length = 917
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 90 LCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFL 147
L P+ FG + S+ + ++ +P VI FD G R+QL YKAHR +
Sbjct: 30 LATSAGEPTHVVFG-FASMLLEVLNDFEPDYVIVCFDT--GRSFRQQLYEEYKAHRPETP 86
Query: 148 RQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVV 207
L + ++ R Q +LD LG +P+V EG+EADD+I TL + G ++
Sbjct: 87 DDL-------KHQLERIRQ-LLDALG---IPIVTREGYEADDLIGTLAARATANGLEVLI 135
Query: 208 ASPDKDFKQLISEDVQLVMP-LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ D D QL+ EDV++++P Q + Y + I +Y P + +VGD D
Sbjct: 136 VTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPERLPEYKALVGDPSDN 195
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+PG VPG G KTA +L+++ SLE +L+
Sbjct: 196 IPG----VPGIGEKTATRLIQRFSSLEEMLD 222
>gi|402846384|ref|ZP_10894697.1| DNA-directed DNA polymerase [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268085|gb|EJU17472.1| DNA-directed DNA polymerase [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 919
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 41/270 (15%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADP--VIAVFDG 125
+R+F LD L Y P S GR S F D +S +P + VFD
Sbjct: 3 QRLFLLDAYALIYRAYYAFIKAPRFDSKGRNTSAVFGFVLMLEDLLSKENPEEIAVVFDP 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
GGT R+ P+YKA R + + + R ++L +P V++
Sbjct: 63 AGGTFRHREY-PAYKAQREETPEGIRIAVPLIR-----------ELLAAYRIPAVEVPDF 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ--DLDRWSFYTLKHYI 243
EADDVI TL + G+ ++ +PDKD+ QL++E V++ P+Q + W ++
Sbjct: 111 EADDVIGTLSDLAARAGHEVLMVTPDKDYGQLVTEHVRMYRPMQGGGYEIWGEAEIRE-- 168
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAV 301
++ D P + ++GD VD +PG + G G K A KLL ++G++ENLL +A+ +
Sbjct: 169 -KFGLDSPAQVIDYLALLGDKVDNIPGCK----GIGEKGAQKLLSEYGTVENLLAHASEI 223
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ + L + AD +R +Y + +RR
Sbjct: 224 KGA----TGKKLIEGADDIRLSYYLATIRR 249
>gi|409124233|ref|ZP_11223628.1| DNA polymerase I [Gillisia sp. CBA3202]
Length = 917
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFD 124
+KR+F LD L + G P + S G + + FD + P + FD
Sbjct: 4 QKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAIMGFTNSLFDVIRRERPDHLAVCFD 63
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+G E R +L YKA+R ++ + +I D+L ++PVV++ G
Sbjct: 64 KDGSHE-RTELYADYKANRDATPEPISIA-----------IPYIKDILHAMHIPVVELPG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADDVI TL Q ++GY+ + +PDKDF QL+SE++ + P + + +
Sbjct: 112 CEADDVIGTLAKQAEKEGYKTFMVTPDKDFAQLVSENIFMYRPARMGNGIEILGIPEVQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K L + GS+E LL
Sbjct: 172 KFGVERPEQVIDFLGMMGDASDNIPGL----PGVGEKTAKKFLAEFGSMEELL 220
>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
Length = 937
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 127/254 (50%), Gaps = 36/254 (14%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADP--VIAVFDG 125
K++F LD L Y P S G + + + + P + VFD
Sbjct: 2 KKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKEKPSHIAVVFDT 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ TE R +YKAHR+ L+A+ +++ ++ N+PV+ +G+
Sbjct: 62 DAPTE-RHVDFEAYKAHRQAMPEDLSAAL-----------PYVVKLIEGFNIPVITKDGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + ++G++ +PDKDF QL+SE++ + P + + + +A+
Sbjct: 110 EADDIIGTLAKEGERQGFQVYCMTPDKDFAQLVSENIFIYKPARMGNEMEILGVPEVLAK 169
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRT 303
++ + + + + + GD VD +PGI PG G KTA L++++GS+EN++ NA ++
Sbjct: 170 WDIENVLQVIDILGLWGDAVDNIPGI----PGIGEKTAKSLIRQYGSMENIIANAHELKG 225
Query: 304 VGRD----YAQEAL 313
R+ YAQ+ L
Sbjct: 226 KQRENVEMYAQQGL 239
>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
Length = 904
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 84 FLDVNPLCYEGSRPS--LQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKA 141
F + PL + P+ LQ FG L F ++ + + A+ EGG R+ L P YK+
Sbjct: 18 FFALPPLRDKEGFPTGLLQGFGALLLKFQKEIGLQNVIFAL---EGGKNFRKTLYPKYKS 74
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
R++ + L +++ + + + V IEG+EADDVIATL ++K
Sbjct: 75 TRQEIPQDLALQL-----------PIVMEWIKRMKLTSVSIEGYEADDVIATLSNLAVKK 123
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
GY + S DKD QLI+E + L P++ + + + +Y P + + +VG
Sbjct: 124 GYEVEIYSHDKDLYQLINEGICLFDPIKKIP----IKAEQCLEKYGVHPQQFIDFQSLVG 179
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D VD VPGI P G KTA KL+ GSLE +
Sbjct: 180 DSVDNVPGI----PSIGPKTAQKLIHHFGSLEEI 209
>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
Length = 939
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 36/254 (14%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADP--VIAVFDG 125
K++F LD L Y P S G + + + + +P + VFD
Sbjct: 2 KKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKENPTHIAVVFDT 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ TE R +YKAHR L+A+ +I ++ +PV+ +G
Sbjct: 62 DAPTE-RHTDFEAYKAHREAMPEDLSAAL-----------PYIFKLIEGFRIPVITKDGF 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + +KG++ +PDKDF QL+S+++ + P + + +K +A+
Sbjct: 110 EADDIIGTLAKEAEKKGFQVFCMTPDKDFAQLVSDNIFIYKPARMGNEMEIMGVKEVLAK 169
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRT 303
+ + + + + + GD VD +PGI PG G KTA L+K++GS+EN++ N+ ++
Sbjct: 170 WEIERVEQVIDILGLWGDAVDNIPGI----PGIGEKTAKALIKQYGSVENIIANSHELKG 225
Query: 304 VGRD----YAQEAL 313
R+ YA++ L
Sbjct: 226 KQRENVETYAEQGL 239
>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
Length = 915
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 23/250 (9%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR 143
F + P+ + P FG L H +AV G T R ++ P YKAHR
Sbjct: 18 FHALPPMTRDDGTPVNAVFGFCNMLARLLKEHTGTHLAVIFDAGRTTFRNEIDPRYKAHR 77
Query: 144 RKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
+ +L QF+L + VP ++++G EADD+IA+ ++ +
Sbjct: 78 PEPPEELVP-------------QFVLVREATRAFAVPAIELDGVEADDLIASYAEEMKKA 124
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
G AV+ S DKD QL+ V ++ P++ + +A+Y P + + ++G
Sbjct: 125 GGEAVIISSDKDLMQLLDAHVSMLDPIKS----TPIGPDEVVAKYGVTPEQMVDAQALMG 180
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLR 321
D VD VPG VPG G K A +L+ + G LE++L AAA T+ +E+L +A+ R
Sbjct: 181 DSVDNVPG----VPGIGPKGAAQLIAEFGDLESILAAAASGTMKPSKRRESLVAYAEEAR 236
Query: 322 RNYEVLALRR 331
+ ++ LRR
Sbjct: 237 ISRRLVELRR 246
>gi|344203156|ref|YP_004788299.1| DNA polymerase I [Muricauda ruestringensis DSM 13258]
gi|343955078|gb|AEM70877.1| DNA polymerase I [Muricauda ruestringensis DSM 13258]
Length = 944
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 29/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
+KR+F LD L + G P + S G +++ FD + P +AV
Sbjct: 3 EQKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFVNSLFDVIKREQPDHLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R +L +YKA+R + + + + +I +L +PVV++EG
Sbjct: 63 DKGGSVERTELFEAYKANRDE-----------TPDAIRIAVPYIQQILEAMKIPVVELEG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q ++ Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 YEADDLIGTLAKQAEKENYKVFMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEVQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ P + ++GD D +PG+ PG G KTA K L + S+E LL+
Sbjct: 172 RFGVKRPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFLDQFDSMEGLLS 221
>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
Length = 943
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 27/231 (11%)
Query: 102 FGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRV 161
F L D + AD V +FD G T R ++ P YKA R + L +FS
Sbjct: 57 FSSMLVRLIDDLD-ADHVAVIFDA-GRTTFRNEIYPEYKAQRPEAPEDLVP--QFS---- 108
Query: 162 GRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED 221
I D NVP ++++G EADD+IAT ++G+R V S DKD QL+ +
Sbjct: 109 -----LIRDATRAFNVPCIEMDGFEADDLIATYARLASERGWRVTVVSSDKDLMQLVKDG 163
Query: 222 VQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGR 279
+ + P+++ + R I ++ P + ++ + GD VD VPG VPG G
Sbjct: 164 IDMFDPMKNRPIGR------AEVIEKFGVPPEKVVDVQSLAGDSVDNVPG----VPGIGI 213
Query: 280 KTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
KTA +L+ ++G LE+LL A + + +E L ++A+ R + +++ LR
Sbjct: 214 KTAAQLIDEYGDLESLLARAG--EIKQPKRRENLIEYAEKARISKQLVTLR 262
>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
Length = 921
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVS--------HADPVIAV-FDG 125
KR+F LD L Y P + S G S + V+ A ++A+ FD
Sbjct: 2 KRLFLLDAYALIYRAYYALIRSPRINSKGENTSAIYGFVNTLEDIRRKEAPDMLAIAFDP 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + P YKA R + + RS I D++ N+P+++++G
Sbjct: 62 SGPT-FRHEAYPDYKAQREA-----------TPEDIKRSVPIIKDIIRAYNIPIIEVKGF 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI T+ + +G + +PDKD+ QL+ +V + P W ++ +
Sbjct: 110 EADDVIGTVAKRAAAEGIEVRMVTPDKDYAQLVGPNVLMQRPGHGNAPWEILGVEEVCQK 169
Query: 246 YN-CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y DP + ++GD D +PG PG G KTA L+++ GS+ENLL
Sbjct: 170 YGLTDPKQVIDYLALMGDAADNIPG----CPGVGPKTATTLIQRFGSIENLL 217
>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
Length = 875
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 32/266 (12%)
Query: 79 KKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFDG 125
KK++ +D N + Y + P L + +G + ++ ++ +P ++ FD
Sbjct: 2 KKKLVLIDGNSIAYRAFFALPLLNNDKGVHTNAVYG-FTTMLQKIMTDEEPTHILVAFDA 60
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + YK R+K +L S++F +I ++L +P ++E +
Sbjct: 61 -GKTTFRHKTFGEYKGGRQKTPPEL--SEQFP---------YIRELLDAYQIPRYELENY 108
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL Q + GY + S DKD QL SE + + + + YT +H + +
Sbjct: 109 EADDIIGTLSLQAEKDGYEVKIISGDKDLTQLSSETTTVGITRKGITDIEVYTPEHIMEK 168
Query: 246 YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVG 305
+ P + ++ ++GD D +PG VPG G KTA+KLLK+ G++E LL ++ V
Sbjct: 169 WEITPDRIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFGTIEKLLE--SIDEVS 222
Query: 306 RDYAQEALTKHADYLRRNYEVLALRR 331
+E L +H D + E+ + R
Sbjct: 223 GKKLKEKLEEHKDQAVMSKELATILR 248
>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 925
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 107/219 (48%), Gaps = 26/219 (11%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLG 173
+ AD V +FD G R + P YKAHR L I DV+
Sbjct: 55 TDADHVAVIFDA-GRLSFRNDIYPEYKAHRPPAPEDLVPQ-----------FPLIRDVVA 102
Query: 174 KCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDR 233
NVP V++EG EADD+IAT Q + +G R + S DKD QL+ E V++ LD
Sbjct: 103 AFNVPSVEMEGFEADDLIATYATQAVARGARVTIVSSDKDLMQLVGERVEM------LDT 156
Query: 234 WSFYTLK--HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
T++ + ++ P + ++ + GD D VPG VPG G KTA +L+ ++G
Sbjct: 157 LKNRTIRAPEVLEKFGVAPDRVVDVQALCGDPTDNVPG----VPGIGVKTAAQLIGEYGD 212
Query: 292 LENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L++LL A + + +E L +A+ R + E++ L+
Sbjct: 213 LDSLLARAG--EIKQPKRRETLLNNAELARISRELVRLK 249
>gi|363423034|ref|ZP_09311105.1| DNA polymerase I [Rhodococcus pyridinivorans AK37]
gi|359732175|gb|EHK81195.1| DNA polymerase I [Rhodococcus pyridinivorans AK37]
Length = 907
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R +L +YKA R +A+ +G++ DVLG +P
Sbjct: 71 VAAAFDVSRKT-FRAELFAAYKAQR-------SAAPDDFKGQI----DLTKDVLGAMGIP 118
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q +G+R +V + D+D QL++ D+ ++ P + + + +T
Sbjct: 119 VMAIEGYEADDIIATLATQAHAQGFRVLVVTGDRDALQLVNGDITVLYPRRGVSDLTRFT 178
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + GD D +PGI PG G KTA K ++++GSL L+
Sbjct: 179 PDAVEEKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLSGLV-- 232
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D E K D LR N + L R
Sbjct: 233 --------DRVDEVRGKTGDALRENLSNVLLNR 257
>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
Length = 910
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R + P YKA+R + + RG+V + DVLG +P
Sbjct: 74 IAAAFDVSRKT-FRTEAYPEYKANRSQTPDEF-------RGQV----ELTKDVLGALGIP 121
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ I+G EADDVIATL Q +G+R ++ + D+D QL+ +DV ++ P + + + +T
Sbjct: 122 VMAIDGFEADDVIATLTTQAKAEGFRILIVTGDRDSIQLVDDDVTVLYPRKGVSDLTRFT 181
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ + +Y P+ + GD D +PGI PG G KTA K ++++G L L++
Sbjct: 182 PEEVMTKYGLTPNQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGDLATLVD 236
>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
Length = 930
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
+ D + FD G R YKA R L A ++GR Q V+
Sbjct: 55 NPDSIAVAFDV--GKAFRHDEFVEYKAQRAPMPDDLQA-------QIGRVRQ----VIAA 101
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD-LDR 233
++PV ++ G+EADDVI +L ++ +G++ V+ + DKDF QL+S+ V +V+P +
Sbjct: 102 FDIPVYEVPGYEADDVIGSLAKKLSSQGHQVVIVTGDKDFLQLVSDSVSVVLPARGRFSE 161
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
YT QY DP + + ++GD D +PG VPG G KTA L++ GSL+
Sbjct: 162 VQVYTPDLVRLQYGFDPRYIVDFKALMGDASDNIPG----VPGVGEKTARSLIQTFGSLQ 217
Query: 294 NLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
N+L V ++ + + A+ +H L +N
Sbjct: 218 NILE--NVDSIKPERIRNAIKEHQSQLIQN 245
>gi|260060686|ref|YP_003193766.1| DNA polymerase I [Robiginitalea biformata HTCC2501]
gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
Length = 942
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 31/235 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVF 123
KKR+F LD L + G P + S G +++ FD + P + F
Sbjct: 3 EKKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLFDVIRREQPDHLAVCF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D +G E R +L P YKA+R + + + + +I D+L ++P ++
Sbjct: 63 DKDGSAE-RTELFPEYKANRDE-----------TPDAIRVAVPWIQDILKAMHIPCIERS 110
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+I TL Q +GY+ + +PDKDF QL++E+ + P + + + +
Sbjct: 111 GLEADDIIGTLARQAEAQGYQVYMVTPDKDFGQLVTENTFMYRPARMGNGIEIWGIPEVQ 170
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ + P + ++GD D +PG PG G KTA K + + GSLE LL
Sbjct: 171 KRFGVERPEQVIDYLGMMGDASDNIPGF----PGVGDKTAKKFIDQFGSLEGLLE 221
>gi|408371442|ref|ZP_11169208.1| DNA polymerase I [Galbibacter sp. ck-I2-15]
gi|407743150|gb|EKF54731.1| DNA polymerase I [Galbibacter sp. ck-I2-15]
Length = 942
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFD 124
KK++F LD L + G P + S G +++ D + P + FD
Sbjct: 4 KKKLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAVLGFMNSLLDVIKREQPHHLAVAFD 63
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+G ++ R ++ SYKA+R + + + + I +L ++P + G
Sbjct: 64 KDG-SKDRLEMFESYKANRDE-----------TPEAIKIAVPIIQQILQAMHIPCIVKPG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL Q + Y+ + +PDKDF QL+SE++ + P + + + +
Sbjct: 112 YEADDIIGTLAKQAEKANYQVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQK 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G KTA K LK+ GS+ENLL
Sbjct: 172 KFEVERPEQVIDFLGMMGDAVDNIPGL----PGVGEKTAKKFLKEFGSMENLL 220
>gi|365875036|ref|ZP_09414566.1| DNA polymerase I [Elizabethkingia anophelis Ag1]
gi|442589320|ref|ZP_21008128.1| DNA polymerase I [Elizabethkingia anophelis R26]
gi|365757148|gb|EHM99057.1| DNA polymerase I [Elizabethkingia anophelis Ag1]
gi|442560930|gb|ELR78157.1| DNA polymerase I [Elizabethkingia anophelis R26]
Length = 938
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 29/235 (12%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAVFDGE 126
KR+F +D + + G P L S G S F + + P +AV
Sbjct: 7 KRLFLIDAYAMIFRGYYALIRSPRLTSKGMNTSAIFGFTNSLIELIKREKPTHLAVVFDV 66
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG R YKA+R + + + V HQ +L ++P++ +EG+E
Sbjct: 67 GGKTLRHDDFEEYKANRSETPEAIKIA-------VPYIHQ----ILEAMHIPILGVEGYE 115
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI TL + ++GY + +PDKDF QL+++ V++ P ++ A+Y
Sbjct: 116 ADDVIGTLSYKAEKEGYNVYMVTPDKDFAQLVTDHVKIYKPGMKGGDIEILGVEEVKAKY 175
Query: 247 NC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
DP + ++GD VD +PG++ G G KTA K L+ +GS+ENLL A
Sbjct: 176 EIQDPKQIIDFLAMMGDSVDNIPGLE----GVGEKTAKKFLQDYGSIENLLANTA 226
>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
Length = 980
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 32/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
+KRVF +D L + G P + S G +++ D + P +AV
Sbjct: 36 QKRVFLVDAFALIFRGYYAFIKNPQINSKGLDTSAIMGFMNSLLDVIKREKPDHLAVCFD 95
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R ++ +YKA+R + + + + +I ++L ++P++ G
Sbjct: 96 KGGSVDRVEMFEAYKANRDE-----------TPEAIKIAVPYIQEILKAMHIPIMVKAGF 144
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHYI 243
EADDVI TL Q ++GY+ + +PDKDF QL+S+++ + P D W ++
Sbjct: 145 EADDVIGTLSKQAEKEGYKTFMVTPDKDFAQLVSDNIFMYKPRFGGGYDIWGVPEVQEKF 204
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
DP + ++GD D +PG+ PG G KTA K L +G++ENLL
Sbjct: 205 GV--TDPLQVIDFLGMMGDSADNIPGL----PGVGEKTAKKFLTTYGTMENLL 251
>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
Length = 878
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 34/234 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFD 124
+K+R+ LD + L Y + P L + F + L +++ + D ++ FD
Sbjct: 2 NKERLLILDGHSLMYRAFFALPPLTNKEGIHTNAIYGFIKMLLKMKEEI-NPDYIVTTFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKI 182
+ T R + YKA R K +L + QF + D+L K + + +I
Sbjct: 61 KKAPT-FRHKEYEDYKAGRAKMPDEL-------------NEQFPIVKDILNKLAINIFEI 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
EG EADD+I TL +KG + + D+D QL +++V++V+ + + Y
Sbjct: 107 EGFEADDLIGTLSKFAEEKGIEVYIVTGDRDALQLATDNVKVVINKKGMSEKEIYDKNKM 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
I +Y P + ++ ++GD D +PG VPG G KTALKL+K++GS+EN+L
Sbjct: 167 IEEYGVTPTQFIDVKGLMGDKSDNIPG----VPGIGNKTALKLIKEYGSIENVL 216
>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
Length = 948
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 29/232 (12%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
+KR+F LD L + G P + S G+ +++ FD + P +AV
Sbjct: 4 QKRLFLLDAYALIFRGYYALIKNPRVNSKGQDTSAIMGFVNSLFDVIKREKPDHLAVAFD 63
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R ++ YKA+R + + R+ I ++L +VP ++IEG
Sbjct: 64 KGGSSERVEMYEDYKANRDETPEAI---------RIAVP--IIQEILKAMHVPCIEIEGV 112
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL Q ++ Y+ + +PDKD+ QL+SE++ + P + + + + +
Sbjct: 113 EADDLIGTLAKQAEKEDYQVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKR 172
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + P + ++GD D +PG+ PG G KTA K +K++G LE LL
Sbjct: 173 FEVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIKQYGGLEGLL 220
>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
Length = 942
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 31/235 (13%)
Query: 77 KSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADP--VIAV 122
++ K++F LD L Y S P + S G S F + ++ P + V
Sbjct: 5 QTDKKLFLLDAFALIYRAYFAFSSNPRINSKGFNTSAIFGFTNTLLEILTKEKPSHIAVV 64
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD EG T+ R +YKA+R + L +S I++++ N+ V+ +
Sbjct: 65 FDMEGPTQ-RHIEFETYKANREEMPEDLR-----------KSIPIIIEMIKGFNIEVLGL 112
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
EG+EADDVI TL + + G+ + +PDKD+ QL+ E+ + P + + +
Sbjct: 113 EGYEADDVIGTLAIKAEKAGFTTYMMTPDKDYGQLVDENTFIYKPARLGNGAEILGTEEI 172
Query: 243 IAQYNCDPHSEL-SLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ +EL + ++GD VD +PGI PG G KTA++L+K GS+ENLL
Sbjct: 173 CKKWEIRNVAELIDILGLMGDKVDNIPGI----PGVGEKTAIQLIKDFGSIENLL 223
>gi|444433050|ref|ZP_21228196.1| DNA polymerase I [Gordonia soli NBRC 108243]
gi|443886114|dbj|GAC69917.1| DNA polymerase I [Gordonia soli NBRC 108243]
Length = 917
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG +P
Sbjct: 77 IAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---IP 124
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL + ++GYR ++ + D+D QL+++ V ++ P + + + +T
Sbjct: 125 VMAIEGYEADDIIATLATEAAEQGYRVLIVTGDRDSLQLVTDTVTVLYPRKGVSDLTRFT 184
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L++
Sbjct: 185 PEEVEKKYGLTPRQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLSDLVD 239
>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
Length = 940
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G + + D + P +AV
Sbjct: 3 NQKRLFLLDAFALIFRGYYAFIKNPRINSKGMDTSAIMGFTNSLLDVIKREKPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R + YKA+R + + R+ +I ++L ++PV++ G
Sbjct: 63 DKGGSVSRTAMFTDYKANRDETPEAI---------RIAVP--YIQEILKAMHIPVIEKAG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++ ++ + +PDKDF QL+SE++ + P + + + + A
Sbjct: 112 FEADDIIGTLAKQAEKEDFKVFMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVKA 171
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD VD +PG+ PG G KTA K LK++GS+E LL
Sbjct: 172 KFEIERPEQVIDYLGMMGDAVDNIPGL----PGVGDKTAKKFLKEYGSMEALL 220
>gi|338983099|ref|ZP_08632330.1| DNA polymerase I [Acidiphilium sp. PM]
gi|338207974|gb|EGO95880.1| DNA polymerase I [Acidiphilium sp. PM]
Length = 915
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 23/250 (9%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR 143
F + P+ + P FG L H +AV G T R ++ P YKAHR
Sbjct: 18 FHALPPMTRDDGTPVNAVFGFCNMLARLLKEHTGTHLAVIFDAGRTTFRNEIDPRYKAHR 77
Query: 144 RKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
+ +L QF L + VP ++++G EADD+IA+ ++ +
Sbjct: 78 PEPPEELVP-------------QFALVREATRAFAVPAIELDGVEADDLIASYAEEMKKA 124
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
G AV+ S DKD QL+ V ++ P++ + +A+Y P + + ++G
Sbjct: 125 GGEAVIISSDKDLMQLLDAHVSMLDPIKS----TPIGPDEVVAKYGVTPEQMVDAQALMG 180
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLR 321
D VD VPG VPG G K A +L+ + G LE++L AAA T+ +E+L +A+ R
Sbjct: 181 DSVDNVPG----VPGIGPKGAAQLIAEFGDLESILAAAASGTMKPSKRRESLVAYAEEAR 236
Query: 322 RNYEVLALRR 331
+ ++ LRR
Sbjct: 237 ISRRLVELRR 246
>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
Length = 945
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 34/234 (14%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFDG 125
+KR+F +D L + G P + S G +++ D + P +AV
Sbjct: 4 QKRLFLVDAYALIFRGYYAFIKNPRINSKGLDTSAIMGFMNSLLDVIKRERPDHLAVCFD 63
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ R ++ YKA+R +T ++ +I ++L ++P++ EG
Sbjct: 64 KGGSTDRVEMFQEYKANRDATPEPIT-----------QAIPYICNILEAMHIPIMVKEGF 112
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHYI 243
EADDVI TL Q ++G++ + +PDKDF QL+SE++ + P D W + +
Sbjct: 113 EADDVIGTLSKQAEKEGFKTFMVTPDKDFAQLVSENIFMYKPRFGGGYDIWG---VPEVL 169
Query: 244 AQYN-CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ DP + ++GD D +PG+ PG G KTA K L + GS+E LL
Sbjct: 170 EKFQVTDPLQVIDFLGMMGDSADNIPGL----PGVGEKTAKKFLAQFGSMEGLL 219
>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
Length = 878
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 34/234 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFD 124
+K+R+ LD + L Y + P L + F + L +++ D ++ FD
Sbjct: 2 NKERLLILDGHSLMYRAFFALPPLTNKEGIHTNAIYGFIKMLLKMKEEIK-PDYIVTTFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKI 182
+ T R + YKA R K +L + QF + D+L K + + +I
Sbjct: 61 KKAPT-FRHKEYEEYKAGRAKMPDEL-------------NEQFPIVKDILNKLAINIFEI 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
EG EADD+I TL +KG + + D+D QL +++V++V+ + + Y
Sbjct: 107 EGFEADDLIGTLSKFAEEKGIEVYIVTGDRDALQLATDNVRVVINKKGMSEKEIYDKNKM 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
I +Y P + ++ ++GD D +PG VPG G KTALKL+K++GS+EN+L
Sbjct: 167 IEEYGVTPTEFIDVKGLMGDKSDNIPG----VPGIGNKTALKLIKEYGSIENVL 216
>gi|375149476|ref|YP_005011917.1| DNA polymerase I [Niastella koreensis GR20-10]
gi|361063522|gb|AEW02514.1| DNA polymerase I [Niastella koreensis GR20-10]
Length = 953
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 39/246 (15%)
Query: 73 LEKTKSKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV- 119
+E ++K+VF LD L + P + S G+ +++ D +++ P
Sbjct: 1 MENQSTEKKVFLLDALALIFRAYYALIRNPRITSKGKNTNAQFGFINTLLDLINNQKPTH 60
Query: 120 IAV-FDGEGGTEHRRQLLPSYKAHRRKFLRQLTAS----QRFSRGRVGRSHQFILDVLGK 174
+AV FD + TE R YKA+R++ L A+ +R RG
Sbjct: 61 MAVCFDTQAPTE-RHTEFSEYKANRQESPEDLMAAIPDIKRIIRG--------------- 104
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
N+PV++++G EADDVI TL + GY + +PDKD+ QL+ ++++ P
Sbjct: 105 FNIPVLEVDGFEADDVIGTLSKKGAAAGYVVYMVTPDKDYGQLVDGNIKIYKPGYQGGDA 164
Query: 235 SFYTLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
K ++N + H + + ++GD VD +PGI G G KTA KLL ++G+LE
Sbjct: 165 EILGAKEVCEKWNIKEVHQVIDILGLMGDAVDNIPGI----AGVGEKTAAKLLAEYGTLE 220
Query: 294 NLLNAA 299
N+L A
Sbjct: 221 NVLENA 226
>gi|345023451|ref|ZP_08787064.1| DNA polymerase I [Ornithinibacillus scapharcae TW25]
Length = 838
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R Q YK R+K +L S++F + ++L N+P
Sbjct: 14 ILVAFDA-GKTTFRHQTFKEYKGGRQKTPSEL--SEQFP---------LVKELLNAFNIP 61
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ +EADD+I TL Q +K + V S DKD QL+SE + + + + + YT
Sbjct: 62 HYQLDQYEADDIIGTLAKQGKEKEFEVAVISGDKDMLQLVSEKITVNVTKKGISEVEEYT 121
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ + + P + L+ ++GD D +PG VPG G+KTA KLLK++ +LENL +
Sbjct: 122 PEYLLEKMEVKPEQIIDLKALMGDSSDNIPG----VPGVGQKTATKLLKEYQTLENLYD 176
>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
Length = 892
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 24/212 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPV 179
+FD G T R ++ P YKAHR + +L QF L + VP
Sbjct: 34 IFDA-GRTTFRNEIDPRYKAHRPEPPEELVP-------------QFALVREATRAFAVPA 79
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
++++G EADD+IA+ ++ + G AV+ S DKD QL+ V ++ P++ +
Sbjct: 80 IELDGVEADDLIASYAEEMKKAGGEAVIISSDKDLMQLLDAHVSMLDPIKS----TPIGP 135
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+A+Y P + + ++GD VD VPG VPG G K A +L+ + G LE++L AA
Sbjct: 136 DEVVAKYGVTPEQMVDAQALMGDSVDNVPG----VPGIGPKGAAQLIAEFGDLESILAAA 191
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A T+ +E+L +A+ R + ++ LRR
Sbjct: 192 ASGTMKPSKRRESLVAYAEEARISRRLVELRR 223
>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
Length = 924
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ YKA+R + L + R V N+P V
Sbjct: 70 IFDAARKT-FRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVA-----------FNLPSVD 117
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ +EADD+IAT V Q+L KG + + S DKD QL +DV++ P+++ F T +
Sbjct: 118 LPNYEADDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKN----KFITPED 173
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + ++ + GD D VPG VPG G KTA +L+ K+G+LE LL+ A
Sbjct: 174 IVTKFGVGPEKVIDVQSLAGDSSDNVPG----VPGIGVKTAAELINKYGTLEKLLDNA-- 227
Query: 302 RTVGRDYAQEALTKHAD 318
+ + ++ +E L ++ D
Sbjct: 228 QEIKQNKRRETLIENKD 244
>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
Length = 905
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 100/208 (48%), Gaps = 11/208 (5%)
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQ----FILDVLGKCNVPVVKIE 183
G E L ++ RR F + A + +R + I DVL VP ++ E
Sbjct: 62 GDEQPTHLAVAFDVSRRSFRTERYAEYKGTRSETPPPFKGQVPLIKDVLEALRVPTLERE 121
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL GQ G +V S D+D QL+ DV L+ P++ + + +T +
Sbjct: 122 GFEADDIIATLAGQASAAGMEVLVCSGDRDSIQLVDADVTLLYPVRGVSEMARFTPETVA 181
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y P L +VG+ D +PG VPG G KTA K + + G LE LL A V
Sbjct: 182 EKYGVPPEQYPDLAALVGESSDNLPG----VPGVGPKTAAKWVTQFGGLEPLL--AGVGE 235
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALRR 331
+ + A E L D +R N E+ AL R
Sbjct: 236 L-KGKAAENLRAAVDQVRLNRELNALLR 262
>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
Length = 924
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ YKA+R + L + R V N+P V
Sbjct: 70 IFDAARKT-FRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVA-----------FNLPSVD 117
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ +EADD+IAT V Q+L KG + + S DKD QL +DV++ P+++ F T +
Sbjct: 118 LPNYEADDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKN----KFITPED 173
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + ++ + GD D VPG VPG G KTA +L+ K+G+LE LL+ A
Sbjct: 174 IVTKFGVGPEKVIDVQSLAGDSSDNVPG----VPGIGVKTAAELINKYGTLEKLLDNA-- 227
Query: 302 RTVGRDYAQEALTKHAD 318
+ + ++ +E L ++ D
Sbjct: 228 QEIKQNKRRETLIENKD 244
>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
Length = 939
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 39/240 (16%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFD 124
+K++F LD L Y P L S GR + S D ++ P + FD
Sbjct: 2 QKKLFLLDAMALIYRAYYALIRNPRLTSTGRNTNAQFGFTSTLLDLINKEKPTHMAVAFD 61
Query: 125 GEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
TE R YKA+R L L +R +G N+PVV
Sbjct: 62 THAPTE-RHTTFVDYKANRMDAPEDILDSLDDIKRIIKG---------------FNIPVV 105
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
+++G+EADDVI TL Q GY + +PDKD+ QL+ +V + P ++ K
Sbjct: 106 ELDGYEADDVIGTLAWQAADAGYDVYMVTPDKDYGQLVRNNVFIYKPPYMGNKEEILGPK 165
Query: 241 HYIAQYN-CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ D H + + ++GD VD +PGI PG G KTA+KLL ++ S+E ++ A
Sbjct: 166 EVCEKWQITDVHQVIDILGLMGDAVDNIPGI----PGVGEKTAMKLLSQYHSVEEVIANA 221
>gi|393775970|ref|ZP_10364267.1| DNA polymerase I [Ralstonia sp. PBA]
gi|392716913|gb|EIZ04490.1| DNA polymerase I [Ralstonia sp. PBA]
Length = 930
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R L P YK HR L R + I + + P++
Sbjct: 54 VFDAKGKT-FRDDLYPEYKEHRAPMPEDL-----------ARQIEPIHEAVRALGWPILM 101
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
+EG EADDVI TL + +G R+VV++ DKD QL++ DV LV M + LD
Sbjct: 102 VEGVEADDVIGTLTHRATTQGIRSVVSTGDKDLAQLVNADVTLVNTMSGEVLDPAGVQ-- 159
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD +PG VP G KTALK L ++G+L+N++ NA
Sbjct: 160 ----AKFGVPPERIIDYLALIGDTVDNIPG----VPKVGPKTALKWLTEYGTLDNIIANA 211
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
A++ V E L D+L + E++ ++
Sbjct: 212 GAIKGV----VGENLRNTLDWLPKGRELITVK 239
>gi|404492180|ref|YP_006716286.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
Length = 891
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 111/213 (52%), Gaps = 22/213 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + +FD +G T R+++ P YKA+R L R ++ I +++ N
Sbjct: 55 DHLAVIFDAKGPT-FRKEIYPEYKANRSAMPEDL-------RPQI----PVIKELVKAFN 102
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++EG+EADD+IATL + ++G V + DKD Q++SE V+L+ ++D
Sbjct: 103 MPALELEGYEADDIIATLARRFAERGMAVTVVTGDKDLMQVVSERVRLLDTMKD----QV 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
L ++ P + ++ + GD D VPG VPG G KTA L+ + G+LENLL
Sbjct: 159 VGLAEVAERFGGTPDKVVEVQALAGDSSDNVPG----VPGIGEKTARTLIAQFGTLENLL 214
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
A + V QE L + + R + ++++L
Sbjct: 215 --ANIDQVSGKKRQENLRQFGEQARLSKKLVSL 245
>gi|377566950|ref|ZP_09796196.1| DNA polymerase I [Gordonia sputi NBRC 100414]
gi|377525798|dbj|GAB41361.1| DNA polymerase I [Gordonia sputi NBRC 100414]
Length = 947
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 98/179 (54%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R ++ P YKA R K + F+ G+V + + +LD LG +P
Sbjct: 103 VAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---IP 150
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q +GY+ +V + D+D QL+ + V ++ P + + + +T
Sbjct: 151 VMAIEGYEADDIIATLATQAEAEGYKVLVVTGDRDSLQLVDDSVTVLYPRKGVSELTRFT 210
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L++
Sbjct: 211 PEEVEKKYGLTPTQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLID 265
>gi|392390036|ref|YP_006426639.1| DNA polymerase I [Ornithobacterium rhinotracheale DSM 15997]
gi|390521114|gb|AFL96845.1| DNA polymerase I [Ornithobacterium rhinotracheale DSM 15997]
Length = 931
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIA 121
T KR+F LD L + G P + S G +++ + V P +
Sbjct: 3 TLQDKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAIMGFMNSLLEVVKKEKPTHLAV 62
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD R + P YKA R + + + + +I ++L +PV+
Sbjct: 63 VFDVGKQNTLRHEYFPDYKATRDE-----------TPEGIKVAVPYIQEILRAMKIPVLY 111
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG+EADDVI TL + + G+ + +PDKDF QL+SE +++ P + +K
Sbjct: 112 AEGYEADDVIGTLAKKAEKDGFTTFMMTPDKDFAQLVSEHIKMYKPASRGGGIQIWGVKE 171
Query: 242 YIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ DP + ++GD D +PGI PG G KTA K ++K+GS+E L
Sbjct: 172 VQENFGVKDPKQIIDYLGMMGDSADNIPGI----PGIGPKTAQKFIEKYGSMEGL 222
>gi|423718989|ref|ZP_17693171.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
gi|383367892|gb|EID45167.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
Length = 877
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R+K +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHKTFEEYKGGRQKTPPEL-------------SEQFPLLRELLNAYQ 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++E +EADD+I TL + +G+ V S D+D QL+S+ V + + + +
Sbjct: 100 IRFYELENYEADDIIGTLCAKAENEGFEVKVISGDRDLTQLVSDHVTVDITKKGITDVES 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTALKLLK+ GS+EN+L
Sbjct: 160 YTPETVREKYGLAPQQIIDLKGLMGDKSDNIPG----VPGIGEKTALKLLKEFGSIENIL 215
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
+ ++ + + +E L KH D
Sbjct: 216 D--SIEQISGNKLKENLEKHRD 235
>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
Length = 951
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 30/235 (12%)
Query: 77 KSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADP--VIAV 122
+S K++F LD L Y P + S G+ S F D ++ P + V
Sbjct: 22 ESDKKLFLLDAFALIYRAYFAFAKNPRVNSKGQNTSAAFGFTNVLIDILNKEKPTHIAVV 81
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD GG +R YKAHR + + R + + I V+ +P+
Sbjct: 82 FDPPGGATNRNVDFADYKAHREEMPEDI-------RSMI----EPIKQVIKAFRIPIYMA 130
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
EG+EADD+I T+ ++G++ + +PDKDF QL+SE++ + P + D +K
Sbjct: 131 EGYEADDLIGTMAKMAEKEGFKTYMMTPDKDFGQLVSENIFIYKPGRGGDPAVIMGVKEV 190
Query: 243 IAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + + + GD D +PGI PG G KTA KL+ +GS+E +
Sbjct: 191 CEKFEVENPLQVIDILGLWGDAADNIPGI----PGVGEKTAKKLIADYGSMEGVF 241
>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
Length = 905
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 22/203 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD T+ R ++ YKA R++ L +F+ ++ ++LG +
Sbjct: 51 DCWVVAFDKTKATK-RIEMYDQYKAQRKETPETLKP--QFA---------YLKEILGAMS 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
VPV++ EG+EADD+IAT+ + +G +V + DKD QL+S+ + M ++ +
Sbjct: 99 VPVLESEGYEADDLIATVTRRAEAEGMEIIVITGDKDAFQLVSDQTTVEMTIKGISTVEC 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y +Y P + L+ ++GD D +PGI PG G KTALKLL GSLE +L
Sbjct: 159 YNKDKLFEKYQLKPEQIIDLKGLMGDPSDNIPGI----PGIGEKTALKLLWSFGSLEQVL 214
Query: 297 -NAAAV-----RTVGRDYAQEAL 313
N AV + + ++Y ++AL
Sbjct: 215 ENVDAVPGNKLKALLKEYPEQAL 237
>gi|336234370|ref|YP_004586986.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
gi|335361225|gb|AEH46905.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
Length = 878
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R+K +L S QF L ++L
Sbjct: 55 MLVAFDA-GKTTFRHKTFEEYKGGRQKTPPEL-------------SEQFPLLRELLNAYQ 100
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++E +EADD+I TL + +G+ V S D+D QL+S+ V + + + +
Sbjct: 101 IRFYELENYEADDIIGTLCAKAENEGFEVKVISGDRDLTQLVSDHVTVDITKKGITDVES 160
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTALKLLK+ GS+EN+L
Sbjct: 161 YTPETVREKYGLAPQQIIDLKGLMGDKSDNIPG----VPGIGEKTALKLLKEFGSIENIL 216
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
+ ++ + + +E L KH D
Sbjct: 217 D--SIEQISGNKLKENLEKHRD 236
>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
Length = 941
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R ++ P+YK HR L R + I + + P+V
Sbjct: 60 VFDAKGKT-FRDEMYPAYKEHRPSMPEDL-----------ARQIEPIHEAVRALGWPIVV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
+EG EADDVI TL Q ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VEGVEADDVIGTLARQAAEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPAGVN-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L +HG+L+N++ A
Sbjct: 166 ----AKFGVPPERIVDYLSLIGDAVDNVPG----VPKVGPKTAVKWLTEHGTLDNIMAGA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
A ++ V E L D+L + E++ ++
Sbjct: 218 AGIKGV----VGENLRNTLDWLPKARELVTVK 245
>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
Length = 878
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R+K +L S QF L ++L
Sbjct: 55 MLVAFDA-GKTTFRHKTFEEYKGGRQKTPPEL-------------SEQFPLLRELLNAYQ 100
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++E +EADD+I TL + +G+ V S D+D QL+S+ V + + + +
Sbjct: 101 IRFYELENYEADDIIGTLCAKAENEGFEVKVISGDRDLTQLVSDHVTVDITKKGITDVES 160
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTALKLLK+ GS+EN+L
Sbjct: 161 YTPETVREKYGLAPQQIIDLKGLMGDKSDNIPG----VPGIGEKTALKLLKEFGSIENIL 216
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
+ ++ + + +E L KH D
Sbjct: 217 D--SIEQISGNKLKENLEKHRD 236
>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
Length = 881
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD + L Y + P L + +G ++ + P ++ FD
Sbjct: 2 NKERLLILDGHSLMYRAFFALPPLTNKEGIHTNAIYG-FIKMLLKMKEEIKPNYIVIAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKI 182
+ T R + YKA R K +L + QF + D+L K + + +I
Sbjct: 61 KKAPT-FRHKEYEDYKAGREKMPSEL-------------NEQFPIVKDILNKLAINIFEI 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G EADD+I TL KG + + DKD QL +++V++V+ + + Y K
Sbjct: 107 DGFEADDLIGTLSEFAEGKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRKRM 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
I +Y P + ++ ++GD D +PG VPG G KTA KL+K++GS+EN+L+
Sbjct: 167 IEEYEVTPTQFIDVKGLMGDKSDNIPG----VPGIGTKTAFKLIKEYGSIENVLD 217
>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
49030]
gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
49030]
Length = 867
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 21/222 (9%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+LS+ + + P V FD G R P YKA R + + F G+V
Sbjct: 41 FLSMLLTVLENEKPDHVAVAFD-LGRQTFRLDEYPEYKAGRAR------TPEDFP-GQV- 91
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
I D+L N+PV+ +EG+EADD++ATL Q +G +AS DKD QL S+ V
Sbjct: 92 ---DLIQDMLRALNIPVLTLEGYEADDILATLALQATDRGVTTKIASGDKDSFQLASDTV 148
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P + + + +T + +Y P + L +VG+ D +PG VPG G KTA
Sbjct: 149 TILYPKRGVTELNRFTPQAVEEKYGVTPANYRGLAALVGEKADNLPG----VPGVGEKTA 204
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNY 324
K L K+G L+ +++ A +G E L H D ++RNY
Sbjct: 205 AKWLAKYGDLDAIIDNA--EDIGGKVG-EKLRDHLDDVKRNY 243
>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
Length = 1040
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 30/219 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC- 175
D + A +D G R ++ PSYKA R+ LT LDV+ +
Sbjct: 55 DLMAAAWDAPGPV-FRSEIDPSYKATRKDQPEDLTPQ---------------LDVIARAL 98
Query: 176 ---NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
VPVV + G EADDV+ATL + GY ++ + DKD +QL+++ + L +L
Sbjct: 99 EGFRVPVVAVPGFEADDVLATLARRGAAAGYDVILCTSDKDARQLLTDP---AIRLLNLR 155
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
+ + A++ P + + GD VD VPG VPG G KTA+KLL + G+L
Sbjct: 156 KGQIIDAAAHRAEWGIGPERVVDALALTGDAVDNVPG----VPGIGLKTAVKLLNEFGTL 211
Query: 293 ENLLNAA-AVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ LL AA A R G+ +AL +HA+ L R ++ LR
Sbjct: 212 DQLLEAARAGRVPGKK--GQALVEHAEALDRARRLIQLR 248
>gi|387793201|ref|YP_006258266.1| DNA polymerase I [Solitalea canadensis DSM 3403]
gi|379656034|gb|AFD09090.1| DNA polymerase I [Solitalea canadensis DSM 3403]
Length = 942
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFDG 125
K++F LD L Y P S G + + + + P + VFD
Sbjct: 3 KKLFLLDGMALIYRAHFALSKNPRFTSSGLNTSAMMGFTNTLLEVIKKEQPTHIAVVFDT 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ TE R YKAHR L+A+ + + ++ N+PV+ +G+
Sbjct: 63 DAPTE-RHTDFEHYKAHREAMPEDLSAALPYVK-----------RIIEGFNIPVITFDGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + Q G+ + +PDKDF QL+++ + + P + + +K + +
Sbjct: 111 EADDIIGTLAKKAEQHGFITYMMTPDKDFAQLVTDKIFIYKPARMGNEMEIMGVKEVLQK 170
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + + + + + GD VD +PG VPG G KTA L++K+GS+EN+
Sbjct: 171 WEVERVDQVIDILGLWGDAVDNIPG----VPGIGEKTAKTLIQKYGSMENIF 218
>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 930
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFDG 125
K++F LD L Y P L S G + + + + + P + VFD
Sbjct: 2 KKLFLLDGMALIYRAYFALSKTPRLTSNGLNTGAIMGFTNTLLEVLKNQKPTHIAVVFDT 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ T +R SYKAHR K L+AS +I ++ N+P++ +G+
Sbjct: 62 DAPT-NRHIEFESYKAHREKMPEDLSAS-----------IPYIFRLIEGFNIPIITKDGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + QKG+ +PDKDF QL+S+++ + P + + + +A+
Sbjct: 110 EADDIIGTLAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAK 169
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ S+ + + + GD VD +PGI PG G KTA KL++ GS+E ++
Sbjct: 170 WEISDVSQVIDILGLWGDAVDNIPGI----PGIGEKTAKKLVQDFGSVEGII 217
>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
exonuclease [Cupriavidus taiwanensis LMG 19424]
Length = 939
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 24/181 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R L P+YK HR L R + I + + P+V
Sbjct: 60 VFDAKGKT-FRDDLYPAYKEHRPSMPEDLA-----------RQIEPIHEAVRALGWPIVV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL Q +++G R VV++ DKD QL++E V LV M + LD
Sbjct: 108 VDGVEADDVIGTLSRQAMEQGVRTVVSTGDKDLAQLVNEHVTLVNTMSGEVLDP------ 161
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+A++ P + ++GD VD VPG VP G KTA+K L +HGSL+ ++ AA
Sbjct: 162 PGVLAKFGVPPERIIDYLSLIGDAVDNVPG----VPKVGPKTAVKWLAEHGSLDGVMAAA 217
Query: 300 A 300
+
Sbjct: 218 S 218
>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
Length = 887
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 15/166 (9%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R L P YKA R K A F +G++ DVLG +PV+ EG EADDVI
Sbjct: 63 RADLFPEYKAQRAK------APDEF-KGQI----DITKDVLGALGIPVMAEEGFEADDVI 111
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q GYR +V + D+D QL++++V ++ P + + + +T +Y+ P
Sbjct: 112 ATLTTQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTPTAVEEKYSLSPS 171
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ GD D +PGI PG G KTA K ++++G L+ L++
Sbjct: 172 QYPDFAALRGDPSDNLPGI----PGVGEKTATKWIREYGDLQGLVD 213
>gi|415884119|ref|ZP_11546148.1| DNA polymerase I [Bacillus methanolicus MGA3]
gi|387591914|gb|EIJ84231.1| DNA polymerase I [Bacillus methanolicus MGA3]
Length = 877
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +P
Sbjct: 54 ILVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIRELLDAFGIP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++G++ V S DKD QL SE + + + + YT
Sbjct: 102 QYELENYEADDIIGTLSKRAEKEGFQVKVISGDKDLTQLCSEKTTVGITRKGITDIEEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
H +Y P + ++ ++GD D +PG VPG G KTA+KLL + S+ENLLN+
Sbjct: 162 PDHIKEKYGLTPEQIIDMKGLMGDASDNIPG----VPGVGEKTAIKLLTEFKSVENLLNS 217
>gi|379731646|ref|YP_005323842.1| DNA polymerase I [Saprospira grandis str. Lewin]
gi|378577257|gb|AFC26258.1| DNA polymerase I [Saprospira grandis str. Lewin]
Length = 927
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAV-FD 124
+K++F LD L Y P + S G + S ++ + P IAV FD
Sbjct: 2 QKKLFLLDAMALIYRAHFAFIKNPLINSKGLNVSAMNGFTSTLWELLRKEKPTHIAVAFD 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GGT R ++ YKA+R + + + ++ ++ N+PVV +
Sbjct: 62 LPGGT-FRHEMYEPYKANREE-----------QPEDIRLAIPYVKQIIEAFNIPVVAVPN 109
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADDVI TL Q ++G+ + +PDKD+ QL+ + + L P + +++S +
Sbjct: 110 YEADDVIGTLAKQAAREGFSVYMMTPDKDYAQLVEDQIFLYKPARFGNKFSVLGKAEVLE 169
Query: 245 QYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + + + + + GD VD +PGI PG G KTA KLL K+GS+ENLL
Sbjct: 170 KWKIERVEQVIDVLGLQGDAVDNIPGI----PGIGPKTAQKLLAKYGSIENLL 218
>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
Length = 299
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 27/212 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVS-HADPVIAV-FDGEGGTEHRRQLLPSYKAHRRKF 146
PL RP+ +G ++ + +S P +AV FD G T R + YKA R++
Sbjct: 23 PLTAPDGRPTGAVYG-FIRMLLKTLSVFNTPYVAVAFDLPGKT-LRHEKFSEYKATRKE- 79
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+ + + + +++ + +++I G+EADD+IATL + ++GY A+
Sbjct: 80 ----------TPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIATLSKKAEKEGYEAI 129
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+ +PDKD QLIS+++++ P+++ LD+ +Y P + ++GD V
Sbjct: 130 IVTPDKDMNQLISDNIKIFNPVKEELLDKEKIK------EKYGIHPQQFIDYLTMIGDAV 183
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
D +PGI+ G G KTA LL++ GSLEN+L
Sbjct: 184 DNIPGIK----GIGPKTAAALLQEFGSLENIL 211
>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
Length = 948
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 32/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAVFD 124
++KR+F +D L + G P + S G +++ D + P +AV
Sbjct: 3 NQKRLFLVDAYALIFRGYYAFIKNPRINSKGEDTSAIMGFMNSLLDVIKRERPDHLAVCF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R ++ YKA+R + + + + +I ++L ++P++ +G
Sbjct: 63 DKGGSVDRVEMYQEYKANRDE-----------TPEGIKTAVPYIYEILKAMHIPIMVKKG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL--QDLDRWSFYTLKHY 242
+EADDVI TL + ++GY+ + +PDKDF QL+SE++ + P+ + W ++
Sbjct: 112 YEADDVIGTLAKKAEKEGYKTFMVTPDKDFAQLVSENIFMYRPVFGGGYETWGIPEVQQK 171
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
DP + ++GD D +PG+ PG G KTA K L +GS+E LL
Sbjct: 172 FEV--TDPLQVIDYLGMMGDASDNIPGL----PGVGPKTAKKFLAAYGSMEGLL 219
>gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
Length = 915
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 15/166 (9%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R L P YKA R K A F +G++ DVLG +PV+ EG EADDVI
Sbjct: 91 RADLFPEYKAQRAK------APDEF-KGQI----DITKDVLGALGIPVMAEEGFEADDVI 139
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q GYR +V + D+D QL++++V ++ P + + + +T +Y+ P
Sbjct: 140 ATLTTQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTQTAVEEKYSLTPS 199
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ GD D +PGI PG G KTA K ++++G L+ L++
Sbjct: 200 QYPDFAALRGDPSDNLPGI----PGVGEKTATKWIREYGDLQGLVD 241
>gi|433443886|ref|ZP_20409009.1| DNA polymerase I [Anoxybacillus flavithermus TNO-09.006]
gi|432001860|gb|ELK22727.1| DNA polymerase I [Anoxybacillus flavithermus TNO-09.006]
Length = 875
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 16/178 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R ++ YK R+K +L S++F F+ ++L N+
Sbjct: 54 MLVAFDA-GKTTFRHEVYTEYKGGRQKTPPEL--SEQFP---------FLRELLDAYNIR 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++G+ V+ S D+D QL SE + + + + + YT
Sbjct: 102 TYELENYEADDIIGTLATKAEKEGFDVVIISGDRDLTQLASERIHVHVTKKGITDMERYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ +Y P + L+ ++GD D +PG VPG G KTALKLLK++G++E++L
Sbjct: 162 PEYVFEKYGLTPAQIVDLKGLMGDASDNIPG----VPGVGEKTALKLLKEYGTIEHVL 215
>gi|453068490|ref|ZP_21971768.1| DNA polymerase I [Rhodococcus qingshengii BKS 20-40]
gi|452765979|gb|EME24232.1| DNA polymerase I [Rhodococcus qingshengii BKS 20-40]
Length = 915
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 96/200 (48%), Gaps = 25/200 (12%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R L P YKA R K A F +G++ DVLG +PV+ EG EADDVI
Sbjct: 91 RADLFPEYKAQRAK------APDEF-KGQI----DITKDVLGALGIPVMAEEGFEADDVI 139
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q GYR +V + D+D QL++++V ++ P + + + +T +Y+ P
Sbjct: 140 ATLTTQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTPTAVEEKYSLSPA 199
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
+ GD D +PGI PG G KTA K ++++G L+ L+ D +
Sbjct: 200 QYPDFAALRGDPSDNLPGI----PGVGEKTATKWIREYGDLQGLV----------DNVDK 245
Query: 312 ALTKHADYLRRNYEVLALRR 331
K D LR N + L R
Sbjct: 246 VRGKVGDSLRENLANVLLNR 265
>gi|441510761|ref|ZP_20992663.1| DNA polymerase I [Gordonia aichiensis NBRC 108223]
gi|441445097|dbj|GAC50624.1| DNA polymerase I [Gordonia aichiensis NBRC 108223]
Length = 933
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R ++ P YKA R K + F+ G+V + + +LD LG +P
Sbjct: 89 VAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---IP 136
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q +GY+ +V + D+D QL+ + V ++ P + + + +T
Sbjct: 137 VMAIEGYEADDIIATLATQAEAEGYKVLVVTGDRDSLQLVDDSVTVLYPRKGVSELTRFT 196
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL L++
Sbjct: 197 PEEVEKKYGLTPTQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLAALID 251
>gi|392961136|ref|ZP_10326599.1| DNA polymerase I [Pelosinus fermentans DSM 17108]
gi|421055126|ref|ZP_15518090.1| DNA polymerase I [Pelosinus fermentans B4]
gi|421058994|ref|ZP_15521627.1| DNA polymerase I [Pelosinus fermentans B3]
gi|421067087|ref|ZP_15528602.1| DNA polymerase I [Pelosinus fermentans A12]
gi|421072006|ref|ZP_15533119.1| DNA polymerase I [Pelosinus fermentans A11]
gi|392440229|gb|EIW17917.1| DNA polymerase I [Pelosinus fermentans B4]
gi|392446594|gb|EIW23879.1| DNA polymerase I [Pelosinus fermentans A11]
gi|392450875|gb|EIW27882.1| DNA polymerase I [Pelosinus fermentans A12]
gi|392454387|gb|EIW31224.1| DNA polymerase I [Pelosinus fermentans DSM 17108]
gi|392459733|gb|EIW36116.1| DNA polymerase I [Pelosinus fermentans B3]
Length = 874
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 20/182 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGK 174
D ++ FD +G R + YKA R+ R+L S QF L +VL
Sbjct: 52 DYMVVAFD-KGKITFRNDVYAEYKAQRKPTPREL-------------SEQFPLTKEVLAA 97
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+E DD+I TL + Q G+ ++ + D+D QLI+ ++++ + +
Sbjct: 98 LGIRELEEAGYEGDDIIGTLAAKAGQAGHEVIIVTGDRDALQLINPHTKVMLTKKGISDM 157
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ + A+YN +P ++ L+ ++GD D +PG VPG G KTA+KL+ ++GS+EN
Sbjct: 158 DIFDKDAFFAKYNVNPRQQIDLKGLMGDASDNIPG----VPGVGEKTAIKLIVEYGSIEN 213
Query: 295 LL 296
+L
Sbjct: 214 VL 215
>gi|377557956|ref|ZP_09787578.1| DNA polymerase I [Gordonia otitidis NBRC 100426]
gi|377524861|dbj|GAB32743.1| DNA polymerase I [Gordonia otitidis NBRC 100426]
Length = 932
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R ++ P YKA R K + ++ +LD LG +P
Sbjct: 88 VAAAFDVSRKT-FRSEMFPEYKAQRSKSPDEFNGQVELTKE--------VLDALG---IP 135
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q +GY+ +V + D+D QL+ + V ++ P + + + +T
Sbjct: 136 VMAIEGYEADDIIATLATQAEAEGYKVLVVTGDRDSLQLVDDSVTVLYPRKGVSDLTRFT 195
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL L++
Sbjct: 196 PEEVEKKYGLTPTQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLAELID 250
>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
Length = 868
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 36/263 (13%)
Query: 80 KRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFDGE 126
K + LD + + Y + PSL++ +G + S+ F + P ++A FD +
Sbjct: 4 KTLLLLDGSSIAYRAFFALPSLRTRTGLPTGAVYG-FTSMLFKVLEERRPTAIVAAFD-K 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
T R L +YKAHR +L Q+F+ I +VL NVPVV+ EG E
Sbjct: 62 SKTTFRHALAETYKAHRPATPDEL--RQQFN---------LIKEVLTALNVPVVEKEGFE 110
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I TLV + ++G++ ++ + D D QL+S +V+ + + + + ++
Sbjct: 111 ADDLIGTLVDRAEKEGWQCLIVTGDLDALQLVSPLTTVVLMRKGISEIAVFNEAEVKRRF 170
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA-----AAV 301
P + + GD D +PG+ PG G KTA +LL+ H SLE LL + A +
Sbjct: 171 GVTPRQLPDFKALAGDASDNIPGL----PGIGPKTASRLLQSHQSLEKLLESKESLPAKL 226
Query: 302 R-TVGRDYAQEALTKHADYLRRN 323
R T+ R + L K +RR+
Sbjct: 227 RETLERHKEEAVLAKKLALIRRD 249
>gi|344923355|ref|ZP_08776816.1| DNA polymerase I [Candidatus Odyssella thessalonicensis L13]
Length = 893
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 102 FGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRV 161
F L +Q + + +AV R+++ P YKAHR L +FS
Sbjct: 38 FCTMLMRHIEQAQYDNSYLAVIFDAARETFRQEIYPDYKAHRPDVPEDLIP--QFS---- 91
Query: 162 GRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED 221
I + G NVP V++EG+EADD+IA+ Q+G V+ S DKD QL+ +
Sbjct: 92 -----IIREACGAFNVPSVELEGYEADDLIASYAKAAQQQGMEVVIISSDKDLMQLVRDG 146
Query: 222 VQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKT 281
V ++ P+++ + ++ P+ + ++ + GD D +PG VPG G KT
Sbjct: 147 VTMLDPIKN----KRIAEQEVFEKFGVFPNKVIDVQALAGDATDNIPG----VPGIGIKT 198
Query: 282 ALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
A +L+ GS+E LL A + + + +++L HAD R + ++ L
Sbjct: 199 AAELINSFGSVEALLERA--QEIKQPKRRQSLVDHADNARISKRLVTL 244
>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 866
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 105 WLSLFFDQVSHADPV-IAV-FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+L++F ++ P IAV FD + T R +L YKA+R +L G
Sbjct: 38 FLTMFNRVLAEIQPTHIAVAFDKDRST-FRNELYSEYKANRSAPPEEL-----------G 85
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
Q + DVL N+ ++++G+EADD+I TL + ++G + V+ + D D QL+SE V
Sbjct: 86 GQFQLLRDVLAALNIEYLEMQGYEADDIIGTLSKKAEEQGLKTVILTGDGDALQLVSEQV 145
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++++ + + Y + ++ +P + ++ ++GD D +PG VPG G KTA
Sbjct: 146 EVLLTKKGISEMELYDPQGVKDKWGVEPEKMVEIKGLMGDASDNIPG----VPGVGPKTA 201
Query: 283 LKLLKKHGSLENL 295
+KL+++ SLENL
Sbjct: 202 MKLVQEFTSLENL 214
>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
Length = 917
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 121/257 (47%), Gaps = 34/257 (13%)
Query: 81 RVFF---LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQL 135
R FF LD + +P+ +G + S+ + P V A FD T R ++
Sbjct: 37 RAFFALPLDGGRFRTKSGQPTNAVYG-FTSMLIKLLKEEAPGYVAAAFDVSRQT-FRAEM 94
Query: 136 LPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLV 195
P YKA R +A F RG+V + DVL +P + EG+EADD+IAT+
Sbjct: 95 YPEYKAQRS------SAPDDF-RGQV----DVVKDVLAAMGIPTMAQEGYEADDIIATMT 143
Query: 196 GQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELS 255
+ ++G+ ++ + D+D QL++E V ++ P + + + +T + A+Y P
Sbjct: 144 TRAQEQGFDVLIVTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVDAKYGLTPSQYPD 203
Query: 256 LRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRTVGRDYAQEALT 314
+ GD D +PGI PG G KTA K ++++GSLE L+ N V+
Sbjct: 204 YAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLEGLVENVDKVK-----------G 248
Query: 315 KHADYLRRNYEVLALRR 331
K D LR N + L R
Sbjct: 249 KVGDSLRENLATVQLNR 265
>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
Length = 949
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P+YKA R K + F+ G+V + + +LD LG +P
Sbjct: 77 IAAAFDVSRKT-FRSEMYPAYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---IP 124
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q +GY +V + D+D QL+++ V ++ P + + + +T
Sbjct: 125 VMAIEGYEADDIIATLATQADAEGYSVLVVTGDRDSLQLVNDSVTVLYPRKGVSELTRFT 184
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + GD D +PGI PG G KTA K ++++GSL +L+
Sbjct: 185 PAEVEKKYGLTPTQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLV-- 238
Query: 299 AAVRTVGRDYAQEALTKHADYLRRN 323
D+ E K D LR N
Sbjct: 239 --------DHVDEVKGKVGDALRAN 255
>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
5a2]
Length = 936
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 44/262 (16%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIA 121
T +K ++F LD L Y P + S G + + + ++ P +I
Sbjct: 3 TTNKPKLFLLDALALIYRAHFAFIKNPRITSKGLNTSATLGFTNTLVEVITKEKPSHIIV 62
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
FD G HR P+YK HR +T + + + +L +PV+
Sbjct: 63 AFDT-GAPTHRHTAFPAYKEHRPSQPEDITVAIPYVK-----------KILKAFRIPVLL 110
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP------LQDLDRWS 235
+EG+EADD+I TL Q +G+ + +PDKDF QL+ + + + P + LDR +
Sbjct: 111 LEGYEADDIIGTLARQAAVQGFEVYMMTPDKDFAQLVDDHIYIYKPAFMGNGVAILDRQA 170
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
K I+ N D + L + GD VD +PGI P G KTA KL+++ G+LENL
Sbjct: 171 VLE-KWGIS--NVDQIRD--LLALQGDAVDNIPGI----PSIGIKTAQKLIQQFGTLENL 221
Query: 296 LNAAAVRTVGRDYAQEALTKHA 317
L A A + G+ QE + K+A
Sbjct: 222 L-ANADQLTGK--LQENVVKYA 240
>gi|402492609|ref|ZP_10839369.1| DNA polymerase I [Aquimarina agarilytica ZC1]
Length = 943
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSL-------FFDQVSHADP-VIAVFD 124
S K++F LD L + G P + S G +S D + P +AV
Sbjct: 3 SNKKLFLLDAFALIFRGYYALIKNPRITSKGMDVSAIMGFTNSLLDVIRRERPDYLAVAF 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG++ R ++ P YKA+R + + + + +I ++L ++P+++ G
Sbjct: 63 DKGGSQARTEIFPEYKANRDE-----------TPEAIKIAVPYIQEILKAMHIPIIEQMG 111
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++G++ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 112 VEADDLIGTLAKQAEKEGFQTYMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQK 171
Query: 245 QYN-CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++GD VD +PG+ PG G KTA K + +GS+E L
Sbjct: 172 KFEVAHPEQVIDYLGMMGDAVDNIPGL----PGVGDKTAKKFIAAYGSMEGLF 220
>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|383485028|ref|YP_005393940.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386322304|ref|YP_006018466.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-GD]
gi|416111293|ref|ZP_11592550.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
gi|442315114|ref|YP_007356417.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-CH-2]
gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-GD]
gi|380459713|gb|AFD55397.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|441484037|gb|AGC40723.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Riemerella anatipestifer RA-CH-2]
Length = 935
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 5/131 (3%)
Query: 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM 226
+I +L ++P++ +EG+EADDVI T+ G+ ++GY + +PDKDF QL++E +++
Sbjct: 96 YIHRILKAMHIPILGVEGYEADDVIGTIAGKAEKQGYEVFMVTPDKDFAQLVTEHIKIYK 155
Query: 227 PLQDLDRWSFYTLKHYIAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
P +K + +Y + P + ++GD VD +PG++ G G KTA K
Sbjct: 156 PGLKGGDVEILGVKEVLEKYEIENPKQIIDYLGMMGDSVDNIPGLE----GVGEKTAKKF 211
Query: 286 LKKHGSLENLL 296
+K++GS+ENLL
Sbjct: 212 IKEYGSMENLL 222
>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
Length = 921
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 25/217 (11%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
HAD VFD G T R + P YKA+R L R ++ H+ ++ +LG
Sbjct: 56 HADYAACVFDASGPT-FRDAIYPDYKANRAPMPEDL-------RAQIEPIHE-VVRLLG- 105
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
PV+ IEG EADDVI TL +G R V++S DKD QL+ E V ++ + R
Sbjct: 106 --WPVLAIEGVEADDVIGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRR- 162
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ A++ P + + +VGD VD VPG VP G KTA K L ++GSL+
Sbjct: 163 ---DVAGVTAEFGVPPALMVDFQALVGDAVDNVPG----VPKVGPKTAAKWLAEYGSLDA 215
Query: 295 LL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ +A A++ V A E L D+L E++ ++
Sbjct: 216 LVAHAGAIKGV----AGENLRGALDWLPTARELVTIK 248
>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
Length = 978
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R +L P YKA+R + L +F+ I +VP ++
Sbjct: 67 IFD-YSSTTFRNELYPEYKANRSEPPEDL--RPQFA---------LIRQATRAFDVPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT + G + S DKD QLI+ V + ++D+ +
Sbjct: 115 TEGFEADDIIATYAKLATEAGADTTIVSSDKDLMQLINPQVVMYDTMKDI----VVDEEG 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
A++ DP + L+ + GD D +PG VPG G KTA +LL ++G+LE LL A
Sbjct: 171 VFAKFGVDPSKMIDLQALAGDSTDNIPG----VPGIGPKTAAQLLDEYGTLEELLERAG- 225
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ ++ +E + +HAD R + +++ LR
Sbjct: 226 -EIKQNKRRENMIEHADLARISKQLVTLR 253
>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
33861]
gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
33861]
Length = 930
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFDG 125
K++F LD L Y P L S G + + + + + P + VFD
Sbjct: 2 KKLFLLDGMALIYRAYFALSKTPRLTSNGLNTGAIMGFTNTLLEVLKNQKPTHIAVVFDI 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ T +R SYKAHR K L+AS +I ++ N+P++ +G+
Sbjct: 62 DAPT-NRHIEFESYKAHREKMPEDLSAS-----------IPYIFRLIEGFNIPIITKDGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + QKG+ +PDKDF QL+S+++ + P + + + +A+
Sbjct: 110 EADDIIGTLAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAK 169
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ S+ + + + GD VD +PGI PG G KTA KL++ GS+E ++
Sbjct: 170 WEISDVSQVIDILGLWGDAVDNIPGI----PGIGEKTAKKLVQDFGSVEGII 217
>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
Length = 878
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 22/216 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPETVEEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRRY 332
A++ + + +E L ++ D + ++ A+RRY
Sbjct: 218 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRRY 251
>gi|407975471|ref|ZP_11156376.1| DNA polymerase I [Nitratireductor indicus C115]
gi|407429099|gb|EKF41778.1| DNA polymerase I [Nitratireductor indicus C115]
Length = 983
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R L P YKA+R + L I + ++P V+
Sbjct: 67 IFDHSSKT-FRNDLYPEYKANRSEPPEDLVPQ-----------FGLIREATRAFDLPCVE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++G EADD+IAT + G + S DKD QL+++ V + P++D + +
Sbjct: 115 LQGFEADDLIATYARLASEAGAETTIISSDKDLMQLVTDQVSMYDPMKDRE----IRIPE 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + L+ + GD VD VPG VPG G KTA +LL+++G L+ LL A
Sbjct: 171 VIEKWGVPPEKMIDLQALTGDSVDNVPG----VPGIGPKTAAQLLEEYGDLDTLLERAG- 225
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ ++ +E L +HA+ R + E++ LR
Sbjct: 226 -EIKQNKRRENLIEHAEKARVSRELVRLR 253
>gi|410459279|ref|ZP_11313031.1| DNA polymerase I [Bacillus azotoformans LMG 9581]
gi|409930472|gb|EKN67471.1| DNA polymerase I [Bacillus azotoformans LMG 9581]
Length = 878
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R Q YK R K +L S++F FI +VL N+P
Sbjct: 55 ILVAFDA-GKTTFRHQTFSEYKGGREKTPHEL--SEQFP---------FIREVLDAFNIP 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++ V S DKD QL+S+ V ++ + + Y
Sbjct: 103 RYELELYEADDIIGTLAKKAEKEQIEVKVISGDKDLLQLVSDYVTVLHTKKGITDVDTYD 162
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +YN P + ++ ++GD D +PG VPG G KTA+KLL + G+LE L +
Sbjct: 163 VDQIKERYNLTPDQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLTQFGTLEKTLES 218
Query: 299 AAVRTVGRDYAQEALTKHAD 318
A V QE L ++ D
Sbjct: 219 IA--EVSGKKLQEKLAENID 236
>gi|310814704|ref|YP_003962668.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
gi|308753439|gb|ADO41368.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
Length = 339
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
IAV +G R + P YKAHR L +R N+
Sbjct: 69 IAVIFDKGSITFRNDIYPEYKAHRPPLPEDLRPQFPLTRA-----------ATAAFNIAY 117
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
+IEG EADD+IATL + + G R V S DKD QL+ V + P+++
Sbjct: 118 KEIEGFEADDIIATLAREAAEAGGRVTVISSDKDLMQLVGPAVCMFDPMKN----KLIDA 173
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
I ++ P + ++ + GD VD VPG PG G KTA +L+ ++G L+NLL NA
Sbjct: 174 DGVIEKFGVAPDRVVDVQALAGDSVDNVPG----APGIGIKTAAQLIGEYGDLDNLLANA 229
Query: 299 AAVRTVGRDYAQEALTKHADYLR 321
A ++ R +E L AD +R
Sbjct: 230 AQIKQPKR---RETLINFADQIR 249
>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
Length = 915
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R L P YKA R K A F +G++ DVLG +PV+ EG EADDVI
Sbjct: 91 RADLFPEYKAQRAK------APDEF-KGQI----DITKDVLGALGIPVMAEEGFEADDVI 139
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q GYR +V + D+D QL++++V ++ P + + +T +Y+ P
Sbjct: 140 ATLTTQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGASELTRFTPTAVEEKYSLSPA 199
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ GD D +PGI PG G KTA K ++++G L+ L++
Sbjct: 200 QYPDFAALRGDPSDNLPGI----PGVGEKTATKWIREYGDLQGLVD 241
>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
Length = 933
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 129/279 (46%), Gaps = 33/279 (11%)
Query: 65 KADFCGNGLEKTKSKKRVFFLDVNPLCYEG-------------SRPSLQSFGRWLSLFFD 111
+A G + ++ R+ +D + + Y +P+ +G + S+ +
Sbjct: 15 RASSARKGAKAAPARPRLLLIDGHSMAYRAFYALPVQNFATTTGQPTNAVYG-FTSMLIN 73
Query: 112 QVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+ DP AV R ++ YK R K + RG+V + +
Sbjct: 74 LLRDEDPTHFAVTFDVSRASFRTEVYADYKGTRTKSPDEF-------RGQV----DLVKE 122
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VL VPVV+IEG+EADDVIATL Q + +G+ +++S D+D QL+ +V ++ P++
Sbjct: 123 VLAALRVPVVEIEGYEADDVIATLTEQAVAQGFDVLISSGDRDAFQLVRPEVTVLYPVKG 182
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + T + A+Y P L +VG+ D +PG VPG G KTA K + +
Sbjct: 183 VSELTRMTPEAVEAKYGVPPERYPDLAALVGESSDNLPG----VPGVGAKTAAKWINLYD 238
Query: 291 SLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
L+ ++ A + + A E+L H D + RN + AL
Sbjct: 239 GLDGVIANA---DLIKGKAGESLRAHLDSVIRNRRLNAL 274
>gi|374334321|ref|YP_005091008.1| DNA polymerase I [Oceanimonas sp. GK1]
gi|372984008|gb|AEY00258.1| DNA polymerase I [Oceanimonas sp. GK1]
Length = 911
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 26/217 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G T R + P YKAHR L R ++ Q I D++ +P
Sbjct: 60 VAVVFDAKGKT-FRDDIYPEYKAHRPSMPDDL-------RSQI----QPIHDIIRAMGLP 107
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ EG EADDVI TL Q ++ V+++ DKD QL+S+ V L+ D + SF
Sbjct: 108 LLIEEGVEADDVIGTLARQATEQRLDVVISTGDKDMAQLVSDHVLLM----DTMKNSFLD 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL-LN 297
+ ++ P S + L +VGD VD +PG+ PG G KTAL LL+ GS++++ N
Sbjct: 164 RDGVVEKFGVPPESIIDLLALVGDKVDNIPGM----PGVGEKTALALLQGLGSIDDIAAN 219
Query: 298 AAAVRTVG----RDYAQEALTKHADYLRRNYEVLALR 330
+ ++G + +A + +H + +R +Y + ++
Sbjct: 220 TDKIASLGFRGAKSFAPK-FVEHEEMVRLSYTLATIK 255
>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
Length = 894
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 25/195 (12%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPV 179
VFD +G T R + P YKAHR ++L S QF ++++L +P+
Sbjct: 58 VFDAKGKT-FRDEWYPEYKAHRPPMPQEL-------------SSQFTPLIELLEAMGIPI 103
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
+ IEG EADDVI TL Q ++G V+++ DKD QL++E + L+ + + S +
Sbjct: 104 LIIEGVEADDVIGTLATQATEQGVSVVISTGDKDMAQLVNEHISLINTMNN----SAMDI 159
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+ ++ P + ++GD VD VPG+ G KTA+K L ++ SL+NL+ NA
Sbjct: 160 EGVKEKFGIMPSQVIDYLTLIGDSVDNVPGVTKC----GPKTAIKWLTEYQSLDNLIRNA 215
Query: 299 AAVRTVGRDYAQEAL 313
+ DY +E++
Sbjct: 216 NQIGGKIGDYLRESI 230
>gi|375009844|ref|YP_004983477.1| DNA polymerase I [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288693|gb|AEV20377.1| DNA polymerase I [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 876
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 160 YTPETVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 248
>gi|452990420|emb|CCQ98373.1| DNA polymerase I [Clostridium ultunense Esp]
Length = 894
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD +G T R + YKA+R+ +L SQ+F + ++L N
Sbjct: 56 DYICVAFDKKGPT-FRHEAFDLYKANRQSTPNEL--SQQFP---------ILKEILSAMN 103
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++++G+EADD+ TL G ++ + DKD+ QL S+ ++++ + +
Sbjct: 104 IAQLELDGYEADDIAGTLSKMGEDNGLETILVTGDKDYLQLASDYTKVLITRKGITELEE 163
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y + I +Y P + L+ ++GD D +PG VPG G KT +KLLK+ G++ENL
Sbjct: 164 YDREKIIEEYGITPDQFIDLKGLMGDKSDNIPG----VPGIGEKTGIKLLKEFGTMENLY 219
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
+ + VG +E+L +H +
Sbjct: 220 D--NIDKVGGKKTKESLIEHKN 239
>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
Length = 877
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter sp. 4H-3-7-5]
gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter sp. 4H-3-7-5]
Length = 949
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSL-------FFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G +S FD + P +AV
Sbjct: 8 TQKRLFLLDAYALIFRGYYALIKNPRITSSGMDVSAIMGFTNSLFDVIKRERPDHLAVAF 67
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R + YKA+R + + R+ H I ++L ++P+++ +G
Sbjct: 68 DKGGSSARVEAFEDYKANRDETPEAI---------RIAIPH--IQEILRAMHIPIIERQG 116
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++G++ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 117 VEADDLIGTLSKQAEKEGFKVYMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQK 176
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K + +GS+E LL
Sbjct: 177 RFEVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIAAYGSMEGLL 225
>gi|403727802|ref|ZP_10947782.1| DNA polymerase I [Gordonia rhizosphera NBRC 16068]
gi|403203734|dbj|GAB92113.1| DNA polymerase I [Gordonia rhizosphera NBRC 16068]
Length = 886
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG +P
Sbjct: 51 IAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---IP 98
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q +GY+ +V + D+D QL+++ V ++ P + + + +T
Sbjct: 99 VLAIEGYEADDIIATLATQADAEGYQVLVVTGDRDSLQLVNDSVTVLYPRKGVSDLTRFT 158
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L++
Sbjct: 159 PEEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLVD 213
>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
Length = 878
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPEAVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 250
>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
Length = 878
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPEAVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 250
>gi|421075531|ref|ZP_15536544.1| DNA polymerase I [Pelosinus fermentans JBW45]
gi|392526529|gb|EIW49642.1| DNA polymerase I [Pelosinus fermentans JBW45]
Length = 874
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGK 174
D ++ FD +G R + YKA R+ R+L S QF L +VL
Sbjct: 52 DYMVVAFD-KGKITFRNDVYAEYKAQRKPTPREL-------------SEQFPLTKEVLAA 97
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+E DD+I TL + Q G+ ++ + D+D QLI+ ++++ + +
Sbjct: 98 LGIRELEEAGYEGDDIIGTLAAKAGQAGHDVIIVTGDRDALQLINPHTKVMLTKKGISDM 157
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ + A+YN P ++ L+ ++GD D +PG VPG G KTA+KL+ ++GS+EN
Sbjct: 158 DIFDKDAFFAKYNVTPQQQIDLKGLMGDASDNIPG----VPGVGEKTAIKLIVEYGSIEN 213
Query: 295 LL 296
+L
Sbjct: 214 VL 215
>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
Length = 927
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD G T R L P YKAHR L R ++ HQ ++ +LG
Sbjct: 57 ADYAACVFDASGPT-FRDTLYPEYKAHRAPMPDDL-------RAQIEPIHQ-VVRLLG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PVV + G EADDVI TL ++G +V+S DKD QL+ E + ++ + R
Sbjct: 106 -WPVVCVPGVEADDVIGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG VP G KTA K L ++GSL+ L
Sbjct: 163 --DVAGVTAEFGVPPSLMVDYQTLVGDAVDNVPG----VPKVGPKTAAKWLNEYGSLDGL 216
Query: 296 L-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L A ++ V A E L D+L + E++ +R
Sbjct: 217 LARAGEIKGV----AGENLRNALDWLPKGRELVTIR 248
>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
Length = 890
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 67 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 115 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +YN P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 175 KEALFEKYNLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 225
>gi|402573282|ref|YP_006622625.1| DNA polymerase I [Desulfosporosinus meridiei DSM 13257]
gi|402254479|gb|AFQ44754.1| DNA polymerase I [Desulfosporosinus meridiei DSM 13257]
Length = 872
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 19/236 (8%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
F + PL RP+ G LF +Q H D + FD T Q YKA
Sbjct: 17 FYALPPLTTADGRPTNVLHGFLTMLFKLEQEQHPDYWVVAFDKTKATVRIEQY-AGYKAQ 75
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R++ L ++ ++L +VP++++ G+EADD+IA + Q +G
Sbjct: 76 RKETPEGLRPQ-----------FDYLKEILADMDVPLLELAGYEADDLIAAITKQAEAQG 124
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
+ + DKD QLIS + + + + Y +Y PH + L+ ++GD
Sbjct: 125 MEIQIYTGDKDALQLISPRTNIFLTKKGISEIERYDETALWERYQLRPHQIIDLKGLMGD 184
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
D +PG VPG G KTALKLL + ++EN+L A V V Q L ++AD
Sbjct: 185 TSDNIPG----VPGIGEKTALKLLWEFETVENVL--ANVERVSGKKVQSNLKEYAD 234
>gi|385234002|ref|YP_005795344.1| DNA polymerase I [Ketogulonicigenium vulgare WSH-001]
gi|343462913|gb|AEM41348.1| DNA polymerase I [Ketogulonicigenium vulgare WSH-001]
Length = 945
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
IAV +G R + P YKAHR L +R N+
Sbjct: 69 IAVIFDKGSITFRNDIYPEYKAHRPPLPEDLRPQFPLTRA-----------ATAAFNIAY 117
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
+IEG EADD+IATL + + G R V S DKD QL+ V + P+++
Sbjct: 118 KEIEGFEADDIIATLAREAAEAGGRVTVISSDKDLMQLVGPAVCMFDPMKN----KLIDA 173
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
I ++ P + ++ + GD VD VPG PG G KTA +L+ ++G L+NLL NA
Sbjct: 174 DGVIEKFGVAPDRVVDVQALAGDSVDNVPG----APGIGIKTAAQLIGEYGDLDNLLANA 229
Query: 299 AAVRTVGRDYAQEALTKHADYLR 321
A ++ R +E L AD +R
Sbjct: 230 AQIKQPKR---RETLINFADQIR 249
>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
Length = 876
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 18/200 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R +YK+ R+K +L S++F I ++L N+
Sbjct: 53 MVVAFDA-GKTTFRHDTYDAYKSGRQKTPPEL--SEQFP---------LIRELLDAFNIA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V++E EADD+I TL Q Q+ + + + DKD Q++S+ V + + + + + Y
Sbjct: 101 RVEVENFEADDLIGTLAKQASQENFEVKIFTGDKDLLQIVSDHVTVALTRKGITQIDVYD 160
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
K +Y P + ++ ++GD D +PG VPG G KTALKLLK++GS+E +L
Sbjct: 161 EKGIEERYGITPEQIIDMKGLMGDSSDNIPG----VPGIGEKTALKLLKEYGSVEKVLE- 215
Query: 299 AAVRTVGRDYAQEALTKHAD 318
++ + +E L +H D
Sbjct: 216 -SIDEISGKKMKERLEEHRD 234
>gi|373857545|ref|ZP_09600286.1| DNA polymerase I [Bacillus sp. 1NLA3E]
gi|372452677|gb|EHP26147.1| DNA polymerase I [Bacillus sp. 1NLA3E]
Length = 877
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +
Sbjct: 54 ILVAFDA-GKTTFRHKTFSEYKGGRQKTPPEL--SEQFP---------FIKELLDAYGIS 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E EADD+I T+ Q Q G+ V S DKD QL S+ + + + + + YT
Sbjct: 102 RYELENFEADDIIGTMSRQAEQDGFEVKVISGDKDLTQLSSDKITVCITRKGITDIESYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
H +Y P+ + ++ ++GD D +PG VPG G KTA+KLLK+ +LE LLN+
Sbjct: 162 PDHIREKYGLSPNQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLKEFETLEKLLNS 217
>gi|398813590|ref|ZP_10572284.1| DNA polymerase I [Brevibacillus sp. BC25]
gi|398038396|gb|EJL31560.1| DNA polymerase I [Brevibacillus sp. BC25]
Length = 882
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 8/157 (5%)
Query: 164 SHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED 221
S QF I ++L ++ ++EG+EADD+I TL Q ++ ++ V + DKD QL+SE
Sbjct: 84 SEQFPLIRELLDAFSIKRFELEGYEADDIIGTLTKQADEQAWKTTVITGDKDMLQLVSEH 143
Query: 222 VQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKT 281
V + + + + FYT + +Y P + L+ ++GD D +PG VPG G KT
Sbjct: 144 VSVALTRKGVSEIEFYTPQEIHEKYGLKPLQIIDLKGLMGDSSDNIPG----VPGVGEKT 199
Query: 282 ALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
ALKLL ++GS+E +L + V QE L ++ D
Sbjct: 200 ALKLLHEYGSVEQVLE--NIDKVSGKKLQENLRENVD 234
>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 891
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPQQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
Length = 896
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L++ Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQELSSQ-----------FQPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D+A E K +YLR + L L +
Sbjct: 212 ----------DHANEIGGKIGEYLRASIPHLPLSK 236
>gi|424858296|ref|ZP_18282328.1| DNA polymerase I [Rhodococcus opacus PD630]
gi|356661983|gb|EHI42282.1| DNA polymerase I [Rhodococcus opacus PD630]
Length = 914
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R + P YKA+R K A F +G+V + D
Sbjct: 73 EQPSH---VAAAFDVSRQT-FRAEKFPEYKANRSK------APDEF-KGQV----EITKD 117
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG +PV+ EG EADD+IATL Q GYR +V + D+D QL+++ V ++ P +
Sbjct: 118 VLGALGIPVMAEEGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKG 177
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T +Y P + GD D +PGI PG G KTA K +K++G
Sbjct: 178 VSDLTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIKEYG 233
Query: 291 SLENLLN 297
L L++
Sbjct: 234 DLVGLVD 240
>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
Length = 921
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 25/217 (11%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
HAD VFD G T R + P YKA+R L R ++ H+ ++ +LG
Sbjct: 56 HADYAACVFDASGPT-FRDAIYPDYKANRAPMPEDL-------RAQIEPIHE-VVRLLG- 105
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
PV+ I+G EADDVI TL +G R V++S DKD QL+ E V ++ + R
Sbjct: 106 --WPVLAIKGVEADDVIGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRR- 162
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ +A++ P + + +VGD VD VPG VP G KTA K L ++GSL+
Sbjct: 163 ---DVAGVMAEFGVPPALMVDFQALVGDAVDNVPG----VPKVGPKTAAKWLAEYGSLDA 215
Query: 295 LL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ +A A++ V A E L D+L E++ ++
Sbjct: 216 LVAHAGAIKGV----AGENLRGALDWLPTARELVTIK 248
>gi|345864936|ref|ZP_08817131.1| DNA polymerase I [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124016|gb|EGW53901.1| DNA polymerase I [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 899
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 30/210 (14%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD GG+ R QL P YKA+R +L R ++ HQ ++ +P++
Sbjct: 59 VFDAPGGS-FRNQLYPDYKANRPPMPEEL-------RQQIEPLHQ----IVRAMGLPLLM 106
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
I G EADDVI TL Q Q G + ++++ DKD QL++ V L+ + + S+
Sbjct: 107 IPGVEADDVIGTLAQQAAQLGMQTLISTGDKDMAQLVNAQVALINTMSE----SYTDRDG 162
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+A++ P + +VGD D +PG VP G KTA K L ++G L+NL+
Sbjct: 163 VVAKFGVTPEQIIDYLALVGDSADNIPG----VPKCGPKTAAKWLGQYGDLDNLIA---- 214
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K + LR + E L L R
Sbjct: 215 ------HADEIKGKIGENLRASLEQLPLSR 238
>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 299
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 110/212 (51%), Gaps = 27/212 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVS-HADPVIAV-FDGEGGTEHRRQLLPSYKAHRRKF 146
PL RP+ +G ++ + +S P +AV FD G T R + YKA R++
Sbjct: 23 PLTAPDGRPTGAVYG-FIRMLLKTLSVFNTPYVAVAFDLPGKT-LRHEKFSEYKATRKE- 79
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+ + + + +++ + +++I G+EADD+IATL + +GY A+
Sbjct: 80 ----------TPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIATLSKKAEIEGYEAI 129
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+ +PDKD QLIS+++++ P+++ LD+ +Y P + ++GD V
Sbjct: 130 IVTPDKDMNQLISDNIKIFNPVKEELLDKEKIK------EKYGIYPQQFIDYLTMIGDAV 183
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
D +PGI+ G G KTA LL++ GSLEN+L
Sbjct: 184 DNIPGIK----GIGPKTAAALLQEFGSLENIL 211
>gi|423386080|ref|ZP_17363336.1| DNA polymerase I [Bacillus cereus BAG1X1-2]
gi|423527564|ref|ZP_17504009.1| DNA polymerase I [Bacillus cereus HuB1-1]
gi|401634731|gb|EJS52494.1| DNA polymerase I [Bacillus cereus BAG1X1-2]
gi|402452933|gb|EJV84743.1| DNA polymerase I [Bacillus cereus HuB1-1]
Length = 877
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KESLFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|337287066|ref|YP_004626539.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
gi|335359894|gb|AEH45575.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
Length = 903
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 34/226 (15%)
Query: 97 PSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
P+ FG + + + +P V+ FD +G T R ++ YKA+R L+
Sbjct: 47 PTKAVFG-FTQMLLKLLREMNPEYVVVCFDAKGPT-FRHEMYKEYKANRPPMPDDLSVQI 104
Query: 155 RFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDF 214
+I +V VP+++IEG EADD+IA + ++ + V+ DKD
Sbjct: 105 -----------PYIKEVTRAFGVPILEIEGFEADDLIAAIATRMERP---IVIVGGDKDL 150
Query: 215 KQLISEDVQLVMPLQDL---DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQ 271
LISE V + P++D + W ++ +P L +R + GD +D VPG
Sbjct: 151 FPLISEKVVMWDPMKDELIDESW-------IKKRFGIEPKKLLDVRALAGDSIDNVPG-- 201
Query: 272 HVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHA 317
VPG G KTAL+L+K++GSLE +LN A + + +E L KHA
Sbjct: 202 --VPGIGEKTALRLIKEYGSLEEVLNHA--EEIKQKRLRENLIKHA 243
>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
Length = 914
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R + P YKA+R K A F +G+V + D
Sbjct: 73 EQPSH---VAAAFDVSRQT-FRAEKFPEYKANRSK------APDEF-KGQV----EITKD 117
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG +PV+ EG EADD+IATL Q GYR +V + D+D QL+++ V ++ P +
Sbjct: 118 VLGALGIPVMAEEGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKG 177
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T +Y P + GD D +PGI PG G KTA K +K++G
Sbjct: 178 VSDLTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIKEYG 233
Query: 291 SLENLLN 297
L L++
Sbjct: 234 DLVGLVD 240
>gi|423317224|ref|ZP_17295129.1| DNA polymerase I [Bergeyella zoohelcum ATCC 43767]
gi|405581696|gb|EKB55710.1| DNA polymerase I [Bergeyella zoohelcum ATCC 43767]
Length = 938
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
ILD +G +P + EG+EADDVIAT+ + KGY+ + +PDKDF QL++E++++ P
Sbjct: 99 ILDAMG---IPNLGKEGYEADDVIATIANKAADKGYQVFMVTPDKDFGQLVTENIKIYKP 155
Query: 228 LQDLDRWSFYTLKHYIAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLL 286
+ + +Y P + ++GD VD +PG+Q G G KTA+K L
Sbjct: 156 GLKGGDAEIIGVPEILEKYEIQHPKQVIDFLAMMGDAVDNIPGLQ----GVGEKTAIKFL 211
Query: 287 KKHGSLENLL 296
K+ GS+ENLL
Sbjct: 212 KEFGSIENLL 221
>gi|423478724|ref|ZP_17455439.1| DNA polymerase I [Bacillus cereus BAG6X1-1]
gi|402426755|gb|EJV58870.1| DNA polymerase I [Bacillus cereus BAG6X1-1]
Length = 877
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+SE+ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSENTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
Length = 881
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD + L Y + P L + +G ++ + P ++ FD
Sbjct: 2 NKERLLILDGHSLMYRAFFALPPLTNKEGIHTNAIYG-FIKMLLKMKEEIKPNYIVTAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKI 182
+ T R + YKA R K +L + QF + ++L K + + +I
Sbjct: 61 KKAPT-FRHKEYEDYKAGRAKMPSEL-------------NEQFPIVKEILNKLAINIFEI 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G EADD+I TL +KG + + DKD QL +++V++V+ + + Y
Sbjct: 107 DGFEADDLIGTLSQFAEEKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRNRM 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
I +Y P + ++ ++GD D +PG VPG G KTA KL+K++GS+EN+L
Sbjct: 167 IEEYEVTPTQFIDVKGLMGDKSDNIPG----VPGIGTKTAFKLIKEYGSIENVL 216
>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
Length = 949
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVFDG 125
KR+F +D + + G P + S GR S F + +I VFD
Sbjct: 18 KRLFLIDAYAMIFRGYYALIRAPRMTSDGRDTSAIFGFTNSLIELIRRERPSHLAVVFDV 77
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G R YKA+R + + + + +I +L +VP++ +EG+
Sbjct: 78 -GQASVRTVDFAEYKANRNE-----------TPEAIQLAIPYIHRILKAMHVPILGVEGY 125
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI T+ + ++GY + +PDKDF QL+++ +++ P ++ + +
Sbjct: 126 EADDVIGTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGAEFTILGVDEVKEK 185
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y DP + ++GD VD +PG+ G G KTA K LK++G++ENLL
Sbjct: 186 YEIEDPKQVIDFLAMMGDSVDNIPGLD----GVGEKTAKKFLKEYGNIENLL 233
>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
Length = 888
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 20/182 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD G R +L P+YKA+R + L R ++G I D++ N+P
Sbjct: 54 VAMVFD-VGRVTFRTELYPAYKANRAEMPDDL-------RQQIGP----IRDLVRAFNIP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
VV+++G+EADD+I TL + G + VV + DKD Q+++E L+ ++++
Sbjct: 102 VVELQGYEADDLIGTLAARWEATGGQVVVVTGDKDLMQIVTEQTTLLDTMKNVTS----A 157
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ P + + + GD D +PG VPG G KTA+KL+++ GS++NLL
Sbjct: 158 IPQVHERFGVGPEGVIDILGLAGDSSDNIPG----VPGIGEKTAIKLVQQFGSMDNLLER 213
Query: 299 AA 300
AA
Sbjct: 214 AA 215
>gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
Length = 949
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSL-------FFDQVSHADPV-IAVFD 124
++KR+F LD L + G P + S G +S FD + P +AV
Sbjct: 8 TQKRLFLLDAYALIFRGYYALIKNPRITSSGMDVSAIMGFTNSLFDVIKRERPDHLAVAF 67
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+GG+ R + YKA+R + + R+ H I ++L ++P+++ EG
Sbjct: 68 DKGGSSARVEAYADYKANRDETPEAI---------RIAVPH--IQEILKAMHIPIIEREG 116
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL Q ++ ++ + +PDKD+ QL+SE++ + P + + + +
Sbjct: 117 VEADDLIGTLAKQAEKEDFKVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQK 176
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + ++GD D +PG+ PG G KTA K + +GS+E LL
Sbjct: 177 RFEVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIAAYGSMEGLL 225
>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
Length = 891
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 22/213 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + +FD +G T R+++ YKA+R K L I DV+ N
Sbjct: 54 DQLAVIFDAKGPT-FRKEIYSEYKANRSKMPEDLVPQ-----------IPLIKDVVAAFN 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ G EADD+IATL Q G V + DKD Q++S+ V L+ ++D
Sbjct: 102 IPALEMNGFEADDIIATLARQKSAAGMDVTVVTGDKDLMQVVSDKVCLLDTMKDKQS--- 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
L ++ P + ++ + GD D VPG VPG G KTA L+++ G +ENLL
Sbjct: 159 -GLAEVAERFGGTPDKVIEVQALAGDSSDNVPG----VPGIGEKTAKALIEEFGDVENLL 213
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
A V V QE L + AD R + +++ L
Sbjct: 214 --AHVDQVKGKKRQENLREFADQARLSRQLVTL 244
>gi|429740525|ref|ZP_19274209.1| DNA-directed DNA polymerase [Porphyromonas catoniae F0037]
gi|429160733|gb|EKY03183.1| DNA-directed DNA polymerase [Porphyromonas catoniae F0037]
Length = 919
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQV---------SHADPVIAVFDG 125
+R+F LD L Y P + S GR S F V D + VFD
Sbjct: 3 QRLFLLDAYALIYRAYYAFIKAPRIDSQGRNTSAIFGFVLMLEDLLGKEQPDELAVVFDP 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
GGT R+ P YKA R + + + R +L +P V++ +
Sbjct: 63 AGGTFRHREY-PDYKAQREETPEGIRIAVPIIR-----------QLLEAYRIPAVEVADY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL + G + +PDKD+ QL++E V++ P+Q + + K + +
Sbjct: 111 EADDVIGTLSHRAASAGREVFMVTPDKDYGQLVTEQVKMYRPMQG-GGYEVWGEKEILEK 169
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
+ + + ++GD VD +PG + G G K A KLL ++GS+ENLL A+
Sbjct: 170 FGLSSTKQVIDYLALLGDKVDNIPGCK----GIGEKGAQKLLAEYGSVENLLAHAS 221
>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
Length = 876
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLL++ G++EN+L
Sbjct: 160 YTPETVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLRQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 248
>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
Length = 878
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLL++ G++EN+L
Sbjct: 162 YTPETVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLRQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 250
>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
gi|448239015|ref|YP_007403073.1| DNA polymerase I [Geobacillus sp. GHH01]
gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
gi|445207857|gb|AGE23322.1| DNA polymerase I [Geobacillus sp. GHH01]
Length = 876
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLL++ G++EN+L
Sbjct: 160 YTPETVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLRQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 248
>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
Length = 876
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLL++ G++EN+L
Sbjct: 160 YTPETVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLRQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 248
>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
Length = 874
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K + G + + D+L N+
Sbjct: 53 MLVAFDA-GKTTFRHNTYKEYKGKRQK-----------TPGELAEQLPVMRDLLKAFNIT 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + + + + S DKD QL+SE+V++ + + + Y
Sbjct: 101 YYEVENYEADDIIGTLSTKASKSNWEVKIVSGDKDLLQLVSENVKVALTRKGITNVDTYD 160
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
L+ +Y P + ++ ++GD D +PG VPG G KTALKLLK+ G++E L
Sbjct: 161 LQMIDEKYGIKPEQIIDMKGLMGDASDNIPG----VPGVGEKTALKLLKQFGTVEKL 213
>gi|440784791|ref|ZP_20961922.1| DNA polymerase I [Clostridium pasteurianum DSM 525]
gi|440218768|gb|ELP57986.1| DNA polymerase I [Clostridium pasteurianum DSM 525]
Length = 873
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
++++ F P ++ FD + T R + YKA R+K +L
Sbjct: 37 FINMLFKMREELKPNYIVTTFDKKAPT-FRHKDYKDYKAGRKKMPPEL------------ 83
Query: 163 RSHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
S QF + ++L K + + +IEG EADD+I TL +G + + DKD QL +
Sbjct: 84 -SEQFPVVKELLEKLAINIFEIEGFEADDLIGTLASFSRNQGIEVYIVTGDKDALQLAED 142
Query: 221 DVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
+V++V+ + + Y + Y P + ++ ++GD D +PG VPG G K
Sbjct: 143 NVKIVINKKGMTEKEIYDKDRMLMDYGVTPKQFIDVKGLMGDSSDNIPG----VPGIGEK 198
Query: 281 TALKLLKKHGSLENLL 296
TALKL+K++GS+EN+L
Sbjct: 199 TALKLIKEYGSIENVL 214
>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola potens JR]
gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
Length = 886
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNV 177
+A+ +G T R + YK HR+ +L QF L +++ +
Sbjct: 55 LAIAFDKGKTTFRNEHFEDYKGHRKATPDELKP-------------QFPLVKEIVRAFRI 101
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
PV +IEG+EADD+I T+ + + GY V+ + D+D QL+S ++++ + + Y
Sbjct: 102 PVYEIEGYEADDIIGTVSLKAEEMGYETVIVTGDRDALQLVSPKTRVMLTKKGISEMELY 161
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + ++ ++GD D +PG VPG G KTA KL++++GS+E LL
Sbjct: 162 DENKVAERYGLKPAQIIDMKGLMGDTSDNIPG----VPGIGEKTAAKLVREYGSVEELLA 217
Query: 298 -----AAAVRTVGRDYAQEAL 313
A +R YA++AL
Sbjct: 218 QRGTVAGKLREKLEQYAEQAL 238
>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
Length = 962
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 27/212 (12%)
Query: 88 NPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRK 145
N L G P+ +G L++ V+ +P + VFD +G T R L YK+HR
Sbjct: 26 NYLTNSGGEPTGAMYG-VLNMLRSLVNQVNPSHIAVVFDAKGKT-FRDDLFEQYKSHRPP 83
Query: 146 FLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRA 205
+L R ++ H I+ LG +P++ IEG EADDVI TL Q Q G
Sbjct: 84 MPDEL-------RAQIQPLHN-IIRALG---IPLISIEGVEADDVIGTLAVQAAQDGKEV 132
Query: 206 VVASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDD 263
++++ DKD QL+++ + L+ + D LDR + I +Y P + + GD
Sbjct: 133 LISTGDKDMAQLVNQHIMLINTMNDSLLDR------EGVIEKYGIPPELIIDYLALQGDA 186
Query: 264 VDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 187 SDNIPGVK----GIGEKTALALLQGIGSLQTI 214
>gi|423342500|ref|ZP_17320214.1| DNA polymerase I [Parabacteroides johnsonii CL02T12C29]
gi|409217417|gb|EKN10393.1| DNA polymerase I [Parabacteroides johnsonii CL02T12C29]
Length = 940
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKRENPTHIAVGFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R++ + + +S FI D++ N+P++++ +E
Sbjct: 62 GPT-FRHEAYEQYKAQRQE-----------TPEDIRKSVPFIKDIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGD-YEIMGIPEVLGKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + G++ENLL
Sbjct: 169 GLTSVDQVIDLLGLMGDSSDNIPG----CPGVGEKTAQKLLAEFGTIENLL 215
>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
Length = 891
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGANVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
DSM 18315]
gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
DSM 18315]
Length = 940
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKRENPTHIAVGFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R++ + + +S FI D++ N+P++++ +E
Sbjct: 62 GPT-FRHEAYEQYKAQRQE-----------TPEDIRKSVPFIKDIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGD-YEIMGIPEVLGKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + G++ENLL
Sbjct: 169 GLTSVDQVIDLLGLMGDSSDNIPG----CPGVGEKTAQKLLAEFGTIENLL 215
>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
Length = 907
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 24/183 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD +G T R L P+YKA+R L R ++ H+ I
Sbjct: 59 ADYIACVFDAKGKT-FRDDLYPAYKANRPAMPDDL-------RSQIEPLHEAIR----AE 106
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDR 233
P+V I+G EADDVI TLV QKG R++V++ DKD QL+ V LV M L+ LD
Sbjct: 107 GWPLVVIDGVEADDVIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDE 166
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+A++ P + +VGD VD VPG+ P KTA K L ++G+L+
Sbjct: 167 AGV------VAKFGVAPDRIIDYLTLVGDAVDNVPGVAKCGP----KTAAKWLAEYGTLD 216
Query: 294 NLL 296
NLL
Sbjct: 217 NLL 219
>gi|416913|sp|Q04957.1|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLL++ G++EN+L
Sbjct: 160 YTPEAVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLRQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 248
>gi|410456558|ref|ZP_11310418.1| DNA polymerase I [Bacillus bataviensis LMG 21833]
gi|409927942|gb|EKN65067.1| DNA polymerase I [Bacillus bataviensis LMG 21833]
Length = 878
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +
Sbjct: 55 MLVAFDA-GKTTFRHKTFTEYKGGRQKTPPEL--SEQFP---------FIRELLDAYGIS 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + GY V S DKD QL S + + + + YT
Sbjct: 103 RYELENYEADDIIGTLSLTAEKDGYEVKVISGDKDLTQLSSSTTTVGITRKGITDIEEYT 162
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ +LENLL
Sbjct: 163 PDHVAEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKEFSTLENLLK- 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
++ V + +E LT+ D + E+ + R
Sbjct: 218 -SIDQVSGNKLKEKLTEFKDQALMSKELATIER 249
>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
Length = 944
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 29/231 (12%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAVFDGE 126
KR+F +D + + G P L S G S F + + P +AV
Sbjct: 7 KRLFLIDAYAMIFRGYYALIRNPRLTSKGLDTSAIFGFTNSLIELIRREKPTHLAVVFDV 66
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G R YKA+R + + + + +I +L ++P++ +EG+E
Sbjct: 67 GQASVRTDDFSDYKANRSE-----------TPEAIKIAVPYIHRILEAMHIPILGVEGYE 115
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ + ++GY + +PDKDF QL+++ +++ P ++ A+Y
Sbjct: 116 ADDVIGTIACKAEKEGYTTYMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKY 175
Query: 247 NC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
DP + ++GD VD +PG++ G G KTA+K LK+ G++ENLL
Sbjct: 176 EIEDPKQVIDFLAMMGDAVDNIPGLE----GVGEKTAMKFLKEFGTIENLL 222
>gi|384188661|ref|YP_005574557.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676983|ref|YP_006929354.1| DNA polymerase I [Bacillus thuringiensis Bt407]
gi|452201057|ref|YP_007481138.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
gi|409176112|gb|AFV20417.1| DNA polymerase I [Bacillus thuringiensis Bt407]
gi|452106450|gb|AGG03390.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|336122868|ref|YP_004564916.1| DNA polymerase I [Vibrio anguillarum 775]
gi|335340591|gb|AEH31874.1| DNA polymerase I [Vibrio anguillarum 775]
Length = 971
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 24/184 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
A+ ++ +FD +G T R + P YKA+R L R ++ H +V+
Sbjct: 96 AERMVVIFDAKGKT-FRDDMYPQYKANRPPMPDDL-------RCQIEPLH----NVIRAM 143
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E+V L+ + + LDR
Sbjct: 144 GLPLISIEGVEADDVIGTLASQASQAGMPVLISTGDKDMAQLVDENVTLINTMTNVVLDR 203
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA+ LL+ GSLE
Sbjct: 204 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTAIALLQGIGSLE 253
Query: 294 NLLN 297
+ +
Sbjct: 254 QIYD 257
>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 838
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 112/256 (43%), Gaps = 37/256 (14%)
Query: 78 SKKRVFFLDVNPLCYEGSR-----------PSLQSFGRWLSLFFDQVSHADP-VIAVFDG 125
SKK ++ D L Y P+ +G ++ +F P IAV
Sbjct: 2 SKKTIYLFDGTSLAYRAYYAIKDLTTSKGFPTNAIYG-FIRMFLKLYKDFKPNYIAVAFD 60
Query: 126 EGGTEHRRQLLPSYKAHRR----KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
G R +LL YKA+R+ F QL ++F L+ LG + +++
Sbjct: 61 VGKKTFRSKLLKEYKANRKPTPDSFKLQLPYIKKF------------LECLG---ITILE 105
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD++ T + +GYR V +PDKD +QLI + V+ + + Y L
Sbjct: 106 KEGFEADDILGTAAKKFASEGYRVFVVTPDKDMRQLIDGKIS-VIAINKTGQKEIYDLVS 164
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ +Y +P +VGD VD +PG VP G KTA KL+ + G+LENL +
Sbjct: 165 FKEKYGIEPEQIPDFFGLVGDSVDNIPG----VPSIGEKTAQKLIAEFGNLENLYKNLSK 220
Query: 302 RTVGRDYAQEALTKHA 317
T R E + A
Sbjct: 221 LTSKRREVLEKFKEQA 236
>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
gi|376268515|ref|YP_005121227.1| DNA polymerase I [Bacillus cereus F837/76]
gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
gi|364514315|gb|AEW57714.1| DNA polymerase I [Bacillus cereus F837/76]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 EEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|397730251|ref|ZP_10497010.1| DNA polymerase I [Rhodococcus sp. JVH1]
gi|396933643|gb|EJJ00794.1| DNA polymerase I [Rhodococcus sp. JVH1]
Length = 887
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R + P YKA+R K A F +G+V + D
Sbjct: 46 EQPSH---VAAAFDVSRQT-FRAEKFPEYKANRSK------APDEF-KGQV----EITKD 90
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG +PV+ EG EADD+IATL Q GYR +V + D+D QL+++ V ++ P +
Sbjct: 91 VLGALGIPVMAEEGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKG 150
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T +Y P + GD D +PGI PG G KTA K +K++G
Sbjct: 151 VSDLTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIKEYG 206
Query: 291 SLENLLN 297
L L++
Sbjct: 207 DLVGLVD 213
>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
gi|423549677|ref|ZP_17526004.1| DNA polymerase I [Bacillus cereus ISP3191]
gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
gi|401190473|gb|EJQ97515.1| DNA polymerase I [Bacillus cereus ISP3191]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
10792]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Bacillus anthracis str. A2012]
gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis str. Tsiankovskii-I]
gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
USA6153]
gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
gi|421509335|ref|ZP_15956242.1| DNA polymerase I [Bacillus anthracis str. UR-1]
gi|421639198|ref|ZP_16079791.1| DNA polymerase I [Bacillus anthracis str. BF1]
gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis str. Tsiankovskii-I]
gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
gi|401820787|gb|EJT19950.1| DNA polymerase I [Bacillus anthracis str. UR-1]
gi|403393617|gb|EJY90860.1| DNA polymerase I [Bacillus anthracis str. BF1]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
gi|386738483|ref|YP_006211664.1| DNA polymerase I [Bacillus anthracis str. H9401]
gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|384388335|gb|AFH85996.1| DNA polymerase I [Bacillus anthracis str. H9401]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|392965204|ref|ZP_10330624.1| DNA polymerase I [Fibrisoma limi BUZ 3]
gi|387846587|emb|CCH52670.1| DNA polymerase I [Fibrisoma limi BUZ 3]
Length = 1034
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 61/274 (22%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------A 121
T+ +K++F LD L Y P + S G S F ++ V+
Sbjct: 2 TRPQKKLFLLDALALIYRAHFAFNKNPRITSRGLNTSSIFGFMNSLMEVLNKEKPTHIGV 61
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
FD T R + P YKA R+ ++ ++ + R ++ +P+++
Sbjct: 62 AFDTAKAT-FRHEQFPMYKATRQSQPEDISIAKPYIR-----------QIIEAMQIPILQ 109
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP------------LQ 229
++G EADDVI TL + G+ + +PDKD+ QL+ E + + P +
Sbjct: 110 LDGFEADDVIGTLAKKAALAGFEVYMMTPDKDYGQLVEEHIHIYKPAFMGKPAEKLGVAE 169
Query: 230 DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKH 289
LDRW ++ + +VGD VD +PGI PG G KTA KL+ +
Sbjct: 170 VLDRWQIERIEQVT-----------DMLGLVGDSVDNIPGI----PGIGEKTAQKLIADY 214
Query: 290 GSLENLLNAAAVRTVGR------DYAQEA-LTKH 316
GS+ENL+ A A + G+ +Y Q+ L+KH
Sbjct: 215 GSVENLI-ANAEQLKGKLKENVINYGQQGMLSKH 247
>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
Length = 890
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 79 KKRVFFLD-----------VNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDG 125
K +F LD V L P+ FG ++++ ++ A P + V+D
Sbjct: 4 KPTIFLLDASGYIHRAFHAVKGLATSDGVPTGAVFG-FVNMLLKVLAEARPSHLAVVYDA 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+G T R Q+ P+YKA+R L A R ++ +P V++EG
Sbjct: 63 KGPT-FRHQIFPAYKANRPPMDPALKAQLPLVR-----------QLVTALCLPAVEMEGF 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD++ATL Q ++G+ V+ S DKD QL+ V L ++DL R ++ +
Sbjct: 111 EADDLMATLARQAREQGFEVVLVSADKDLLQLVGPGVSLWDTMKDL-RLGPEEVRQ---K 166
Query: 246 YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
P ++ ++ + GD D VPG VPG G KTA+KLL +H LE +L AA
Sbjct: 167 TGLPPELQVDMQALTGDASDNVPG----VPGVGPKTAVKLLAEHPGLEAVLAAA 216
>gi|407452638|ref|YP_006724363.1| DNA polymerase I - 3'-5' exonuclease and polymerase
domain-containing protein [Riemerella anatipestifer
RA-CH-1]
gi|403313622|gb|AFR36463.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain protein
[Riemerella anatipestifer RA-CH-1]
Length = 935
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM 226
+I +L ++P++ +EG+EADDVI T+ + ++GY + +PDKDF QL++E +++
Sbjct: 96 YIHRILKAMHIPILGVEGYEADDVIGTIASKAEKQGYEVFMVTPDKDFAQLVTEHIKIYK 155
Query: 227 PLQDLDRWSFYTLKHYIAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
P +K + +Y + P + ++GD VD +PG++ G G KTA K
Sbjct: 156 PRLKGGDVEILGVKEVLEKYEIENPKQIIDYLGMMGDSVDNIPGLE----GVGEKTAKKF 211
Query: 286 LKKHGSLENLL 296
+K++GS+ENLL
Sbjct: 212 IKEYGSMENLL 222
>gi|384182395|ref|YP_005568157.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|402555287|ref|YP_006596558.1| DNA polymerase I [Bacillus cereus FRI-35]
gi|401796497|gb|AFQ10356.1| DNA polymerase I [Bacillus cereus FRI-35]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
gi|375286581|ref|YP_005107020.1| DNA polymerase I [Bacillus cereus NC7401]
gi|423355067|ref|ZP_17332692.1| DNA polymerase I [Bacillus cereus IS075]
gi|423570813|ref|ZP_17547058.1| DNA polymerase I [Bacillus cereus MSX-A12]
gi|423603737|ref|ZP_17579630.1| DNA polymerase I [Bacillus cereus VD102]
gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
gi|358355108|dbj|BAL20280.1| DNA polymerase I [Bacillus cereus NC7401]
gi|401085244|gb|EJP93487.1| DNA polymerase I [Bacillus cereus IS075]
gi|401203440|gb|EJR10279.1| DNA polymerase I [Bacillus cereus MSX-A12]
gi|401246501|gb|EJR52848.1| DNA polymerase I [Bacillus cereus VD102]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|423573733|ref|ZP_17549852.1| DNA polymerase I [Bacillus cereus MSX-D12]
gi|401213832|gb|EJR20569.1| DNA polymerase I [Bacillus cereus MSX-D12]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
Length = 931
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADP--VIAVFDG 125
K++F LD L Y P S G + + + + P + VFD
Sbjct: 2 KKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFTNTLLEVLKKEQPTHMAVVFDT 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
E TE R +YKA+R+ L + + + ++ N+PV+ +G+
Sbjct: 62 EAPTE-RHTGFEAYKANRQAMPEDLAVALPYVK-----------KLIEGFNIPVITSDGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL Q + GY +PDKDF QL+SE++ + P + + +K + +
Sbjct: 110 EADDVIGTLAKQAEKVGYTVYCMTPDKDFAQLVSENIFIYKPARMGNDMEILGVKEVLEK 169
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + H + + + GD VD +PGI PG G KTA L+K+ GS+E ++
Sbjct: 170 WEIEHVHQVIDILGLWGDAVDNIPGI----PGIGEKTAKALVKQFGSVEQII 217
>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
Length = 912
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 21/209 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V+ VFD +G T R + YKA R L FI ++ N+P
Sbjct: 76 VVMVFDAKGPT-FRHDIFKDYKATRPPMPEDLQVQI-----------PFIKEITKAFNLP 123
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V++I+G+EADD+I TL + + G+ V+ + DKDF QL+++ + P++D
Sbjct: 124 VIEIQGYEADDIIGTLARKAEESGFSVVMVTGDKDFLQLVTDKSIIWDPMKD----KITD 179
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
L + + P + + + GD D VPG VPG G KTAL L+K GS++NL +
Sbjct: 180 LDAFRKDFGLIPEQMIDVMGLSGDTSDNVPG----VPGIGPKTALDLIKTFGSMKNLYDN 235
Query: 299 AAVRTVGRDYAQEA-LTKHADYLRRNYEV 326
T + Y + AD R+ E+
Sbjct: 236 IDSITKKKQYENLVQFKEQADLSRKLVEI 264
>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E + +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEVYD 230
>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E + +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEVYD 230
>gi|423373465|ref|ZP_17350804.1| DNA polymerase I [Bacillus cereus AND1407]
gi|401096429|gb|EJQ04476.1| DNA polymerase I [Bacillus cereus AND1407]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|406673495|ref|ZP_11080716.1| DNA polymerase I [Bergeyella zoohelcum CCUG 30536]
gi|405585960|gb|EKB59752.1| DNA polymerase I [Bergeyella zoohelcum CCUG 30536]
Length = 938
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
ILD +G +P + EG+EADDVIAT+ + KGY + +PDKDF QL++E++++ P
Sbjct: 99 ILDAMG---IPNLGKEGYEADDVIATIANKAADKGYEVFMVTPDKDFGQLVTENIKIYKP 155
Query: 228 LQDLDRWSFYTLKHYIAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLL 286
+ + +Y P + ++GD VD +PG+Q G G KTA+K L
Sbjct: 156 GLKGGDAEIIGVPEILEKYEIQHPKQVIDFLAMMGDAVDNIPGLQ----GVGEKTAIKFL 211
Query: 287 KKHGSLENLL 296
K+ GS+ENLL
Sbjct: 212 KEFGSIENLL 221
>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKAYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|423426712|ref|ZP_17403743.1| DNA polymerase I [Bacillus cereus BAG3X2-2]
gi|423502738|ref|ZP_17479330.1| DNA polymerase I [Bacillus cereus HD73]
gi|449091540|ref|YP_007423981.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|401110278|gb|EJQ18187.1| DNA polymerase I [Bacillus cereus BAG3X2-2]
gi|402459977|gb|EJV91705.1| DNA polymerase I [Bacillus cereus HD73]
gi|449025297|gb|AGE80460.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
gi|423657526|ref|ZP_17632825.1| DNA polymerase I [Bacillus cereus VD200]
gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
gi|401289082|gb|EJR94803.1| DNA polymerase I [Bacillus cereus VD200]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
Length = 893
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+L+++F V P ++ FD + T R + YKA+R K +L
Sbjct: 52 FLTMYFRAVEEYKPDYILVAFDKKTKT-FRHKEFEDYKANRDKAPNEL------------ 98
Query: 163 RSHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
++QF + D+L NV + I+G+EADD++ T ++G V+ + DKD+ QL+++
Sbjct: 99 -NYQFGILKDILDSLNVKYLDIDGYEADDIVGTFSTIAKEEGLETVIITGDKDYFQLVND 157
Query: 221 DVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
V + + + + + T+K Y P + ++ ++GD D +PG V G G K
Sbjct: 158 KVVVFLTRKGISQMEEITVKSIEDDYGLSPKQLIDVKGLMGDKSDNIPG----VDGIGEK 213
Query: 281 TALKLLKKHGSLENL 295
TA+K +KK+GS+E L
Sbjct: 214 TAIKFIKKYGSMEGL 228
>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|443672856|ref|ZP_21137936.1| DNA polymerase I [Rhodococcus sp. AW25M09]
gi|443414702|emb|CCQ16274.1| DNA polymerase I [Rhodococcus sp. AW25M09]
Length = 913
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R + P YKA+R K + ++ DVLG +P
Sbjct: 77 IAAAFDVSRQT-FRAERFPEYKANRSKTPDEFAGQVDITK-----------DVLGAMGIP 124
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATLV Q GYR +V + D+D QL++++V ++ P + + + +T
Sbjct: 125 VMAEAGFEADDIIATLVTQAEALGYRVLVVTGDRDALQLVTDNVTVLYPRKGVSDLTRFT 184
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + GD D +PGI PG G KTA K + ++GSL L+
Sbjct: 185 PDEVAGKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIIEYGSLTALV-- 238
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D + K D LR N + L R
Sbjct: 239 --------DNVDKVKGKVGDALRANLSSVVLNR 263
>gi|423584886|ref|ZP_17560973.1| DNA polymerase I [Bacillus cereus VD045]
gi|401235078|gb|EJR41551.1| DNA polymerase I [Bacillus cereus VD045]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 214
>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
Length = 924
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 22/197 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ YKA+R + L + R V N+P V
Sbjct: 70 IFDSARKT-FRNEIYSDYKANRSEAPDDLAPQFEYIRKSVLA-----------FNLPSVD 117
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ +EADD+IAT ++L+KG + + S DKD QL +DV++ P+++ F + +
Sbjct: 118 LPNYEADDLIATYAEKILKKGAKVTIVSSDKDLMQLYKKDVRIFDPMKN----KFISEED 173
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ D + ++ + GD D VPG VPG G KTA +L+ K+G+LE LL +A
Sbjct: 174 IINKFGVDASKVIDVQSLAGDSSDNVPG----VPGIGVKTAAELINKYGTLEKLLKSA-- 227
Query: 302 RTVGRDYAQEALTKHAD 318
+ ++ +E L ++ D
Sbjct: 228 NEIKQNKRRETLIENKD 244
>gi|419760900|ref|ZP_14287162.1| DNA polymerase I [Thermosipho africanus H17ap60334]
gi|407513991|gb|EKF48859.1| DNA polymerase I [Thermosipho africanus H17ap60334]
Length = 892
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 23/191 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRK----FLRQLTASQRFSRGRVGRSHQFILDVL 172
D + V D +GG++ R+ +L +YKA+R L Q+ ++ +++
Sbjct: 55 DACVFVLDSKGGSKKRKDILETYKANRPSTPDLLLEQIP---------------YVEELV 99
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
+ V+KIEG EADD+IATL + + + + DKD QL+S+ V + + +
Sbjct: 100 EALGIKVLKIEGFEADDIIATLSKKFENDFEKVNIITGDKDLLQLVSDKVFVWRVERGIT 159
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
Y + +Y P +VGD +D +PG++ G G+KTA+ LLKK+ SL
Sbjct: 160 DLVLYDRNKVLEKYGISPEQFKDYLSLVGDQIDNIPGVK----GIGKKTAVSLLKKYNSL 215
Query: 293 ENLLNAAAVRT 303
EN+LN + T
Sbjct: 216 ENVLNNINLLT 226
>gi|402563898|ref|YP_006606622.1| DNA polymerase I [Bacillus thuringiensis HD-771]
gi|423358328|ref|ZP_17335831.1| DNA polymerase I [Bacillus cereus VD022]
gi|401086015|gb|EJP94247.1| DNA polymerase I [Bacillus cereus VD022]
gi|401792550|gb|AFQ18589.1| DNA polymerase I [Bacillus thuringiensis HD-771]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E + +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEVYD 216
>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|365540266|ref|ZP_09365441.1| DNA polymerase I [Vibrio ordalii ATCC 33509]
Length = 931
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 24/184 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
A+ ++ +FD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 AERMVVIFDAKGKT-FRDDMYPQYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E+V L+ + + LDR
Sbjct: 103 GLPLISIEGVEADDVIGTLASQASQAGMPVLISTGDKDMAQLVDENVTLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA+ LL+ GSLE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTAIALLQGIGSLE 212
Query: 294 NLLN 297
+ +
Sbjct: 213 QIYD 216
>gi|423438021|ref|ZP_17415002.1| DNA polymerase I [Bacillus cereus BAG4X12-1]
gi|401119634|gb|EJQ27445.1| DNA polymerase I [Bacillus cereus BAG4X12-1]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
Length = 907
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD +G T R L P YKA+R L A ++ HQ I
Sbjct: 52 ADYSLCVFDAKGKT-FRDDLYPQYKANRPSMPADLVA-------QIEPLHQLI----AAS 99
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
+ +EG EADDVI TL Q + G R +VA+ DKD QL+ E V L+ + +
Sbjct: 100 GWKIAMVEGVEADDVIGTLARQASRDGVRCIVATGDKDLAQLVDEHVTLINTMNN----E 155
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + ++GD VD VPG++ V P KTA+K L +HGSL+NL
Sbjct: 156 TLDMAGVKAKFGVPPELIVDYLALMGDTVDNVPGVEKVGP----KTAVKWLLQHGSLDNL 211
Query: 296 LNAA 299
+ A
Sbjct: 212 MRNA 215
>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E + +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEVYD 230
>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 EEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|423640344|ref|ZP_17615962.1| DNA polymerase I [Bacillus cereus VD166]
gi|401281260|gb|EJR87173.1| DNA polymerase I [Bacillus cereus VD166]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
gi|423560905|ref|ZP_17537181.1| DNA polymerase I [Bacillus cereus MSX-A1]
gi|434377740|ref|YP_006612384.1| DNA polymerase I [Bacillus thuringiensis HD-789]
gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
gi|401202750|gb|EJR09600.1| DNA polymerase I [Bacillus cereus MSX-A1]
gi|401876297|gb|AFQ28464.1| DNA polymerase I [Bacillus thuringiensis HD-789]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E + +
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEVYD 216
>gi|423650484|ref|ZP_17626054.1| DNA polymerase I [Bacillus cereus VD169]
gi|401281643|gb|EJR87549.1| DNA polymerase I [Bacillus cereus VD169]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
gi|365158631|ref|ZP_09354823.1| DNA polymerase I [Bacillus sp. 7_6_55CFAA_CT2]
gi|423411629|ref|ZP_17388749.1| DNA polymerase I [Bacillus cereus BAG3O-2]
gi|423432584|ref|ZP_17409588.1| DNA polymerase I [Bacillus cereus BAG4O-1]
gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
gi|363626504|gb|EHL77487.1| DNA polymerase I [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104954|gb|EJQ12922.1| DNA polymerase I [Bacillus cereus BAG3O-2]
gi|401115717|gb|EJQ23564.1| DNA polymerase I [Bacillus cereus BAG4O-1]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|423346550|ref|ZP_17324238.1| DNA polymerase I [Parabacteroides merdae CL03T12C32]
gi|409219701|gb|EKN12661.1| DNA polymerase I [Parabacteroides merdae CL03T12C32]
Length = 940
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKRENPTHIAVGFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R++ + + +S FI D++ N+P++++ +E
Sbjct: 62 GPT-FRHEAYEQYKAQRQE-----------TPEDIRKSVPFIKDIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGD-YEIMGVPEVLGKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + G++ENLL
Sbjct: 169 GLTSVDQVIDLLGLMGDSSDNIPG----CPGVGEKTAQKLLAEFGTIENLL 215
>gi|423631302|ref|ZP_17607049.1| DNA polymerase I [Bacillus cereus VD154]
gi|401263875|gb|EJR69991.1| DNA polymerase I [Bacillus cereus VD154]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
Length = 815
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 153 SQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGY 203
S+ ++ + GRS + + V+ +P + +EG+EADD++ATL + + G+
Sbjct: 77 SEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVATLSARAEEAGW 136
Query: 204 RAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDD 263
AVV S D+D QLISE ++ P + + +A+Y P L +VG+
Sbjct: 137 EAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQYPELAALVGEA 196
Query: 264 VDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
D +PG+ V PGF A K LK++G L+ +L A A G+ EAL +H + +RRN
Sbjct: 197 ADNLPGVPGVGPGF----AAKWLKQYGDLDGVL-AHAHEITGKK--GEALREHLEDVRRN 249
Query: 324 YEVLALRR 331
+ AL R
Sbjct: 250 RRLNALVR 257
>gi|423368613|ref|ZP_17346045.1| DNA polymerase I [Bacillus cereus VD142]
gi|401080139|gb|EJP88429.1| DNA polymerase I [Bacillus cereus VD142]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
Length = 914
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA+R K A F +G+V + DVLG +P
Sbjct: 78 VAAAFDVSRQT-FRAEKFPEYKANRSK------APDEF-KGQV----EITKDVLGALGIP 125
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ EG EADD+IATL Q GYR +V + D+D QL+++ V ++ P + + + +T
Sbjct: 126 VMAEEGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKGVSDLTRFT 185
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + GD D +PGI PG G KTA K +K++G L L++
Sbjct: 186 PAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIKEYGDLVGLVD 240
>gi|423582798|ref|ZP_17558909.1| DNA polymerase I [Bacillus cereus VD014]
gi|423634535|ref|ZP_17610188.1| DNA polymerase I [Bacillus cereus VD156]
gi|401211613|gb|EJR18360.1| DNA polymerase I [Bacillus cereus VD014]
gi|401280514|gb|EJR86434.1| DNA polymerase I [Bacillus cereus VD156]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|423521530|ref|ZP_17498003.1| DNA polymerase I [Bacillus cereus HuA4-10]
gi|401177732|gb|EJQ84919.1| DNA polymerase I [Bacillus cereus HuA4-10]
Length = 877
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|336114638|ref|YP_004569405.1| DNA polymerase I [Bacillus coagulans 2-6]
gi|335368068|gb|AEH54019.1| DNA polymerase I [Bacillus coagulans 2-6]
Length = 888
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 18/213 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F I ++L +
Sbjct: 66 ILVAFDA-GKTTFRHETYSEYKGTRQKTPPEL--SEQFP---------LIRELLDAHGIE 113
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++G+ V S DKD QL+S +++ + + YT
Sbjct: 114 RYELENYEADDIIGTLSKKAEEEGFTVKVISGDKDMTQLVSPKTTVMITRKGITDMEAYT 173
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
H +Y PH + ++ ++GD D +PG VPG G KTA+KLLK+ ++E LL
Sbjct: 174 PAHVEEKYGLKPHQIIDMKGLMGDSSDNIPG----VPGIGEKTAIKLLKQFPTVEELL-- 227
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ + V QE L H + + E+ + R
Sbjct: 228 SHIGEVSGKKLQEKLEAHKEQALMSKELATIHR 260
>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|375012630|ref|YP_004989618.1| DNA polymerase I [Owenweeksia hongkongensis DSM 17368]
gi|359348554|gb|AEV32973.1| DNA polymerase I [Owenweeksia hongkongensis DSM 17368]
Length = 927
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 29/238 (12%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPV--------IAV 122
+++ K++F LD L + S P + S G S F ++ V IAV
Sbjct: 2 SENPKKLFLLDAYALIFRAYFAFISNPRVTSKGLDTSAIFGFITTLLEVLEKQKPSHIAV 61
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
G R + +YKA R + + + + +I ++ +P + +
Sbjct: 62 IYDYPGPTFRHEKFEAYKAQRDE-----------TPEGIKLAVPYIQKLMEAFRIPFLGV 110
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
EG EADDVI TL Q ++G+ + +PDKDF QL+SE++++ P + + + ++
Sbjct: 111 EGFEADDVIGTLAKQAEKEGFEVFMMTPDKDFGQLVSENIKMYRPARAGNGAEIWGVEEI 170
Query: 243 IAQYNCDPHSELSLRC-IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
A+++ D ++ ++GD D +PG PG G KTA KLLK++GS+EN+L A
Sbjct: 171 KAKFDIDDVDQVVDYLGMMGDSADNIPGF----PGVGPKTASKLLKQYGSMENMLEHA 224
>gi|397904016|ref|ZP_10504947.1| DNA polymerase I [Caloramator australicus RC3]
gi|343178762|emb|CCC57846.1| DNA polymerase I [Caloramator australicus RC3]
Length = 850
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 109/213 (51%), Gaps = 17/213 (7%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
F + P+ +P+ +G + L Q D +IA FD + R + YKA
Sbjct: 18 FYALPPMNTSTGQPTNAVYGYTVMLIKIIQEMIPDYIIAAFD-KSKKNFRHERFIEYKAG 76
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R+K +L +Q+ + ++L N+ ++++EG+EADD+I TL
Sbjct: 77 RKKMPDEL--AQQIEPTK---------EILRAFNIEILELEGYEADDIIGTLSKGFSNND 125
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
++ + + D+D QL+ +++ ++M + + Y ++ ++ +P + + L+ ++GD
Sbjct: 126 FKVNIITGDRDALQLVDDNITVLMTKKGITELEVYGVEEIKQRFGIEPQNIIDLKALMGD 185
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG VPG G KTALKLL ++G+L+N+
Sbjct: 186 ASDNIPG----VPGIGEKTALKLLHQYGNLDNI 214
>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
Length = 891
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|423557833|ref|ZP_17534135.1| DNA polymerase I [Bacillus cereus MC67]
gi|401192370|gb|EJQ99386.1| DNA polymerase I [Bacillus cereus MC67]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|423519268|ref|ZP_17495749.1| DNA polymerase I [Bacillus cereus HuA2-4]
gi|401159625|gb|EJQ67008.1| DNA polymerase I [Bacillus cereus HuA2-4]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|423660570|ref|ZP_17635739.1| DNA polymerase I [Bacillus cereus VDM022]
gi|401302478|gb|EJS08057.1| DNA polymerase I [Bacillus cereus VDM022]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 891
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
Length = 891
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 226
>gi|423512686|ref|ZP_17489217.1| DNA polymerase I [Bacillus cereus HuA2-1]
gi|402447610|gb|EJV79460.1| DNA polymerase I [Bacillus cereus HuA2-1]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|423670151|ref|ZP_17645180.1| DNA polymerase I [Bacillus cereus VDM034]
gi|423673642|ref|ZP_17648581.1| DNA polymerase I [Bacillus cereus VDM062]
gi|401297511|gb|EJS03120.1| DNA polymerase I [Bacillus cereus VDM034]
gi|401310507|gb|EJS15823.1| DNA polymerase I [Bacillus cereus VDM062]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|423591440|ref|ZP_17567471.1| DNA polymerase I [Bacillus cereus VD048]
gi|423598120|ref|ZP_17574120.1| DNA polymerase I [Bacillus cereus VD078]
gi|401232808|gb|EJR39306.1| DNA polymerase I [Bacillus cereus VD048]
gi|401237581|gb|EJR44032.1| DNA polymerase I [Bacillus cereus VD078]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|423489750|ref|ZP_17466432.1| DNA polymerase I [Bacillus cereus BtB2-4]
gi|423495473|ref|ZP_17472117.1| DNA polymerase I [Bacillus cereus CER057]
gi|423497732|ref|ZP_17474349.1| DNA polymerase I [Bacillus cereus CER074]
gi|401150380|gb|EJQ57839.1| DNA polymerase I [Bacillus cereus CER057]
gi|401162212|gb|EJQ69570.1| DNA polymerase I [Bacillus cereus CER074]
gi|402431041|gb|EJV63113.1| DNA polymerase I [Bacillus cereus BtB2-4]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|381400117|ref|ZP_09925127.1| DNA polymerase I [Microbacterium laevaniformans OR221]
gi|380772586|gb|EIC06280.1| DNA polymerase I [Microbacterium laevaniformans OR221]
Length = 890
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 105 WLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGR 163
+LS+F + V P +AV R P YKA+R + + +G++
Sbjct: 44 FLSMFVNLVKAEQPTHLAVAFDTSRHSFRTDEYPEYKANRSESPAEF-------KGQI-- 94
Query: 164 SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + L NV V+ EG EADD++ATL Q +GY +V S D+D QL+++DV
Sbjct: 95 --PLLQECLAAMNVTVLTKEGVEADDILATLATQGAAEGYDVLVCSGDRDTIQLVTDDVT 152
Query: 224 LVMP-LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
L+ P +Q + + YT + +Y P + + +VG+ D +PG VP G KTA
Sbjct: 153 LLYPSVQGVSQLKRYTPDAVVEKYGLPPANYPDIAALVGETSDNLPG----VPKVGEKTA 208
Query: 283 LKLLKKHGSLENLLNAAAVRT--VGRDYAQEALTKHADYLRRNYEVLALRR 331
+K L + GSL LL A T VG + L H D +RRN + AL R
Sbjct: 209 VKWLTQWGSLNALLENADKITGVVGGN-----LRDHLDDVRRNRTLNALLR 254
>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
Length = 891
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 226
>gi|377809859|ref|YP_005005080.1| DNA polymerase I [Pediococcus claussenii ATCC BAA-344]
gi|361056600|gb|AEV95404.1| DNA polymerase I [Pediococcus claussenii ATCC BAA-344]
Length = 885
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F + L + D V+ D ++A FD G T R ++ +YK R K +LT +
Sbjct: 39 AIYGFNKMLDIILDNVNPTDALVA-FDA-GKTTFRTKMYTNYKGGRAKTPSELTEQMPYL 96
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
R D+L + ++ +EADD+I TL + + GYR + + D+D QL
Sbjct: 97 R-----------DLLTGYGIKSYELADYEADDIIGTLSLEAEKLGYRVTIVTGDRDLTQL 145
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
+S+ + + ++ + YT +H + P + L+ ++GD D PG+ V
Sbjct: 146 VSDKTTVAVTVKGVTEVEDYTPEHLKEKLGVTPTQVIDLKGLMGDSSDNYPGVTKV---- 201
Query: 278 GRKTALKLLKKHGSLENL 295
G KTALKL+ + GS+ENL
Sbjct: 202 GEKTALKLIDQFGSVENL 219
>gi|333906557|ref|YP_004480143.1| DNA polymerase I [Marinomonas posidonica IVIA-Po-181]
gi|333476563|gb|AEF53224.1| DNA polymerase I [Marinomonas posidonica IVIA-Po-181]
Length = 922
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 20/180 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P++ +FD +G T R + YKA R +L R ++ H+ I D +G +
Sbjct: 60 PIVVIFDAKGKT-FRDDIYSDYKAQRPPMPDEL-------RLQIEPIHRMI-DAMG---L 107
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P+V IEG EADDVI T+ QV + G +V++ DKD QL+++ V LV + D +
Sbjct: 108 PLVIIEGVEADDVIGTIAKQVGETGRDVIVSTGDKDMAQLVTDKVTLVNTMTD----TVM 163
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ ++ P + ++GD VD +PG VPG G KTAL LL+ GSL+++ N
Sbjct: 164 DIQGVKDKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTALALLQGLGSLKDIYN 219
>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
HF4000_APKG10H12]
Length = 891
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 108 LFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF 167
L DQ D V A FD +G T R +L YKA RR L +
Sbjct: 47 LLSDQ--QPDLVAAAFDLKGPT-FRHELAADYKATRRPMPEDLV-----------EQVSW 92
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
+ + VPVV G EADDVI TL Q + G VV + DKDF QL+ + +++ P
Sbjct: 93 VHEACAALGVPVVTHAGFEADDVIGTLATQAVAAGLEVVVVTGDKDFFQLVGDRIRVFNP 152
Query: 228 LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLK 287
D ++Y + ++ P + + ++GD D V G VPG G K A +LL
Sbjct: 153 ---RDEGAWYDDAGVLEKFGVRPDQVVDVLALMGDASDNVKG----VPGIGEKGARELLA 205
Query: 288 KHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
GSL+ LL+ A + + + ALT+HAD RR+ E++ L
Sbjct: 206 DFGSLDWLLDHA--DELPKKKYRTALTEHADNARRSRELVRL 245
>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
Length = 891
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 226
>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
Length = 878
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 131/270 (48%), Gaps = 36/270 (13%)
Query: 77 KSKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVF 123
+SKK++ +D N + Y + P L + +G + + ++ P ++ F
Sbjct: 2 RSKKKLVLIDGNSVAYRAFFALPLLHNDKGIHTNAVYG-FTMMLNKMLAEERPTHLLVAF 60
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVK 181
D G T R + YK R++ +L S QF L ++L +P +
Sbjct: 61 DA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYRIPAYE 106
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +EADD+I TL + Q+G+ V S D+D QL S V + + + + YT +
Sbjct: 107 LDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPET 166
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L A++
Sbjct: 167 VEEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL--ASI 220
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ + +E L ++ D + ++ A+RR
Sbjct: 221 DEIKGEKLKENLRQYRDLALLSKQLAAIRR 250
>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
Length = 877
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L VP
Sbjct: 54 MLVAFDA-GKTTFRHKTFSDYKGGRQKTPPEL--SEQFP---------FIRELLDAFRVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G + V S DKD QL+S+ ++ +P + + YT
Sbjct: 102 RYELEDYEADDIMGTLAKEASEQGAQVKVISGDKDLLQLVSDHTRVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +YN P + ++ ++GD D +PG VPG G KTA+KLL + G++E
Sbjct: 162 KEALFEKYNLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVE 212
>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
Length = 838
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 15 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 62
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 63 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 122
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 123 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 173
>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
Length = 891
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 226
>gi|339326741|ref|YP_004686434.1| DNA polymerase I [Cupriavidus necator N-1]
gi|338166898|gb|AEI77953.1| DNA polymerase I [Cupriavidus necator N-1]
Length = 938
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R + P+YK HR L R + I + + P+V
Sbjct: 60 VFDAKGKT-FRDDMYPAYKEHRPSMPEDLA-----------RQIEPIHEAVRAMGWPIVV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL Q ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLSRQATEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDP------ 161
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+A++ P + ++GD VD VPG VP G KTA+K L +HGSL+ ++ AA
Sbjct: 162 PGVVAKFGVPPERIIDYLSLIGDAVDNVPG----VPKVGPKTAVKWLAEHGSLDGVMAAA 217
>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
Length = 928
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD E TE R +YKAHR L A+ +I ++ N+PV+
Sbjct: 57 VFDTEAPTE-RHTSFEAYKAHREAMPEDLAAAI-----------PYIFRLIEGFNIPVIT 104
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++G EADD+I TL + Q G+ +PDKD+ QL+S+ +++ P + + +K
Sbjct: 105 MDGFEADDIIGTLAKKAEQAGFEVFCMTPDKDYAQLVSDHIKIYKPARMGNGHEILGVKE 164
Query: 242 YIAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ ++ + + + + + GD VD +PGI PG G KTA KL++ GS+E ++
Sbjct: 165 VLEKWEIERVEQVIDILGLWGDAVDNIPGI----PGVGEKTAKKLIQDFGSVEGII 216
>gi|403737735|ref|ZP_10950463.1| DNA polymerase I [Austwickia chelonae NBRC 105200]
gi|403191847|dbj|GAB77233.1| DNA polymerase I [Austwickia chelonae NBRC 105200]
Length = 890
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R + P YKA R + + RG+V I +VL +P V+ +G EADD+I
Sbjct: 67 RAKEYPEYKAGRSQTPEEF-------RGQV----DLIQEVLDALCIPYVQTDGFEADDII 115
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL +G ++ S D+D QL+ E L+ P++ + + T + + +Y P
Sbjct: 116 ATLATSAAGEGMETLIVSGDRDALQLVDETTTLLYPIKGVSELARMTPESVVEKYGVAPG 175
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
L +VG+ D +PG VPG G KTA K L K+G L +L AA + A +
Sbjct: 176 RYSDLAALVGETADNLPG----VPGVGPKTAAKWLSKYGDLTGVLEAAQDGDIKGKVA-D 230
Query: 312 ALTKHADYLRRN 323
L H D +RRN
Sbjct: 231 NLRTHIDAVRRN 242
>gi|424865266|ref|ZP_18289135.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
gi|400758872|gb|EJP73072.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
Length = 891
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 38/266 (14%)
Query: 79 KKRVFFLD-----------VNPLCYEGSRPSLQSFG-RWLSLFFDQVSHADPVIAVFDGE 126
K R+F +D + PL RP+ G + + + S P+I VFD +
Sbjct: 2 KNRIFIIDGSSYLYRAFHALPPLTTSDGRPTGAIKGVTNMLMNLKKESEGSPIIVVFDAK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH-QFILDVLGKCNVPVVKIEGH 185
G T R + YK +R +L RS Q + D+ P+++I G
Sbjct: 62 GKT-FRNDIYKEYKQNRPPMPDEL------------RSQLQPVKDICSAIGFPLIEISGV 108
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVIATLV ++ Y+AV++S DKD QL+ ED + M D + + + +
Sbjct: 109 EADDVIATLVQIAKKEKYKAVISSLDKDLMQLV-EDPHITM--MDTMKHKIFDEEKVEEK 165
Query: 246 YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRTV 304
+ P+ L + GD D +PG VP G KTA K L +G +EN++ N ++ V
Sbjct: 166 FGVKPNQVRDLLALTGDSSDNIPG----VPKVGPKTAAKWLLTYGDIENIIKNQNDIKGV 221
Query: 305 GRDYAQEALTKHADYLRRNYEVLALR 330
D +E + L RN E+++L+
Sbjct: 222 VGDNLRE----FSGSLARNIELVSLK 243
>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
Length = 891
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAREASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|407772585|ref|ZP_11119887.1| DNA polymerase I [Thalassospira profundimaris WP0211]
gi|407284538|gb|EKF10054.1| DNA polymerase I [Thalassospira profundimaris WP0211]
Length = 943
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 34/274 (12%)
Query: 69 CGNGLEKTKSKKRVFFLD-----------VNPLCYEGSRPSLQSFGRWLSLF-FDQVSHA 116
G KS +RV +D + P+ P +G L + +
Sbjct: 7 SSTGSSAAKSPRRVVLVDGSGFIFRAFHALPPMTSPDGTPVNAVYGFCTMLMKLREDTKP 66
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + +FD +G + R P YKAHR +L +F I D N
Sbjct: 67 DHMAVIFDTKGKS-FRNDFYPDYKAHRPPPPEELVP--QFG---------LIRDATRAFN 114
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++EG EADD+IAT Q +G V+ S DKD QL+++ VQ+ +++ +
Sbjct: 115 LPSIELEGFEADDLIATYARQAEAEGSDVVIVSSDKDLMQLVTDRVQMFDAMKNRTIGAA 174
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
L+ ++ P + ++ + GD VD VPG VPG G KTA +L+ ++G L++LL
Sbjct: 175 EVLE----KFGVSPDKVIDIQALAGDSVDNVPG----VPGIGIKTAAQLIDEYGDLDSLL 226
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
A + + +E L ++A+ R + +++ L+
Sbjct: 227 ERAG--EIKQPKRREKLIENAELARISRDLVTLK 258
>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
Length = 897
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 105/220 (47%), Gaps = 25/220 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
V VFD G R + P YKA+R + L A QF L DV N
Sbjct: 53 VALVFDA-GRRSFRHDIDPEYKANRPEAPDDLAA-------------QFPLVRDVARALN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
VPV++ G+EADD+IATL +G+ VV + DKDF QL+ + L P+ +
Sbjct: 99 VPVIEEAGYEADDIIATLASHARAEGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGG 158
Query: 237 YTLKHYIA-QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+T + + P + + I+GD +D VPGI PG G TA L++ G+ E +
Sbjct: 159 WTGPAEVEKKMGVRPEQVIEYQSILGDKIDNVPGI----PGVGEVTAAALVRHFGTTEAM 214
Query: 296 L----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
L A + G + ++ + +A+ +R N ++ALRR
Sbjct: 215 LARPAEIPAAVSRGGEKLRDKVVANAERIRTNRRLVALRR 254
>gi|424863848|ref|ZP_18287760.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86A]
gi|400757169|gb|EJP71381.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86A]
Length = 890
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 38/226 (16%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLG 173
S P+I VFD +G T R + YKA+R +L Q + +
Sbjct: 49 SEGSPIIVVFDAKGKT-FRNDIYSEYKANRPPMPDELRLQL-----------QPVKSICK 96
Query: 174 KCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDR 233
P+++IEG EADDVIAT+ Y+ VV+S DKD QL+ +D D
Sbjct: 97 AIGFPLIEIEGVEADDVIATITKMAKDAKYKCVVSSLDKDLMQLV----------EDPDT 146
Query: 234 WSFYTLKHYI-------AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLL 286
T+KH I ++ P + +VGD D +PG+ V G+KTA K L
Sbjct: 147 TLMNTMKHEIFNEDKVFEKFGVKPSQIRDMLALVGDSSDNIPGVSKV----GQKTAAKWL 202
Query: 287 KKHGSLENLL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
++G+LE ++ NA +++ V D + +L D L RN E+++L+
Sbjct: 203 NEYGNLEGIISNADSIKGVVGDNLRNSL----DDLDRNIELVSLKE 244
>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
Length = 938
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R + P+YK HR L R + I + + P+V
Sbjct: 60 VFDAKGKT-FRDDMYPAYKEHRPSMPEDLA-----------RQIEPIHEAVRAMGWPIVV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL Q ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLSRQATEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDP------ 161
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+A++ P + ++GD VD VPG VP G KTA+K L +HGSL+ ++ AA
Sbjct: 162 PGVVAKFGVPPERIIDYLSLIGDAVDNVPG----VPKVGPKTAVKWLAEHGSLDGVIAAA 217
>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
Length = 937
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 153 SQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGY 203
S+ ++ + GRS + + V+ +P + +EG+EADD++ATL + + G+
Sbjct: 77 SEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVATLSARAEEAGW 136
Query: 204 RAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDD 263
AVV S D+D QLISE ++ P + + +A+Y P L +VG+
Sbjct: 137 EAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQYPELAALVGEA 196
Query: 264 VDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
D +PG+ V PGF A K LK++G L+ +L A A G+ EAL +H + +RRN
Sbjct: 197 ADNLPGVPGVGPGF----AAKWLKQYGDLDGVL-AHAHEITGKK--GEALREHLEDVRRN 249
Query: 324 YEVLALRR 331
+ AL R
Sbjct: 250 RRLNALVR 257
>gi|365158108|ref|ZP_09354349.1| DNA polymerase I [Bacillus smithii 7_3_47FAA]
gi|363621937|gb|EHL73119.1| DNA polymerase I [Bacillus smithii 7_3_47FAA]
Length = 876
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI D+L ++P
Sbjct: 54 MLVAFDA-GKTTFRHETFKEYKGGRQKTPPEL--SEQFP---------FIRDLLKSFHIP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + +K + + S DKD QL SE + + + + YT
Sbjct: 102 QFELENYEADDIIGTLSLEAEKKDFEIKIYSGDKDLTQLASEKTTVCLCRKGITDIEEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ ++E +++
Sbjct: 162 PEHVKEKYGLTPQQIIDMKGLMGDSSDNIPG----VPGIGEKTAIKLLKEFETVEKVVD- 216
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
++ + +E L +H + E+ ++R
Sbjct: 217 -SIDEISGKKLKERLQEHKQQALMSKELATIKR 248
>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
Length = 907
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 15/198 (7%)
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD----VLGKCNVPVVKIEGHEADDVIAT 193
++ R+ F + A + +R + +D VLG + V G EADD+IAT
Sbjct: 68 AFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIAT 127
Query: 194 LVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSE 253
L Q +GYR +V + D+D QL+S DV ++ P + + + +T + I +Y P
Sbjct: 128 LATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQY 187
Query: 254 LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR-TVGRDYAQE 311
L + GD D +PGI PG G KTA K + +GSL+ L+ N +VR VG E
Sbjct: 188 PDLAALRGDPSDNLPGI----PGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVG-----E 238
Query: 312 ALTKHADYLRRNYEVLAL 329
AL H + RN E+ L
Sbjct: 239 ALRTHLASVVRNRELTEL 256
>gi|385810110|ref|YP_005846506.1| DNA polymerase I [Ignavibacterium album JCM 16511]
gi|383802158|gb|AFH49238.1| DNA polymerase I [Ignavibacterium album JCM 16511]
Length = 922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAV-FDGEGGTEHRRQLLPSYKAHRRKFL 147
PL + P+ +G L +H IAV FD + T R + +YK+ R +
Sbjct: 26 PLSTKKGEPTSAVYGFMTQLLKVLENHKPDYIAVAFDSKEKT-FRHEKYEAYKSSREEMP 84
Query: 148 RQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVV 207
+ ++ R Q ++ +PV + G+EADD+I T V + + G ++
Sbjct: 85 EDMVP-------QLERIKQ----IIASLKMPVYILPGYEADDIIGTAVKKAEKLGLESLA 133
Query: 208 ASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGV 267
+PDKD+ QLI++ +++V P + D Y K I + +P + +VGD D +
Sbjct: 134 ITPDKDYFQLITDKIKIVRPGKSNDEVIIYDKKKVIDELGFEPKYMIDYLALVGDSSDDI 193
Query: 268 PGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
PG VPG G KTA+ L+++ G++EN+ N
Sbjct: 194 PG----VPGIGPKTAVPLIQQFGTIENIYN 219
>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
Length = 876
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 160 YTPETVEEKYGLTPEQMVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L ++ D + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRR 248
>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
Length = 876
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI D+L ++P
Sbjct: 54 MLVAFDA-GKTTFRHETFKEYKGGRQKTPPEL--SEQFP---------FIRDLLKSFHIP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + +K + + S DKD QL SE + + + + YT
Sbjct: 102 QFELENYEADDIIGTLSLEAEKKDFEIKIYSGDKDLTQLASEKTTVCLCRKGITDIEEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ ++E +++
Sbjct: 162 PEHVKEKYGLTPQQIIDMKGLMGDSSDNIPG----VPGIGEKTAIKLLKEFETVEKVVD- 216
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
++ + +E L +H + E+ ++R
Sbjct: 217 -SIDEISGKKLKERLQEHKQQALMSKELATIKR 248
>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length = 814
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 51 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 98
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 99 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 158
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 159 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 214
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 215 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 244
>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
gi|1169403|sp|P46835.1|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
Length = 911
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 15/198 (7%)
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD----VLGKCNVPVVKIEGHEADDVIAT 193
++ R+ F + A + +R + +D VLG + V G EADD+IAT
Sbjct: 72 AFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIAT 131
Query: 194 LVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSE 253
L Q +GYR +V + D+D QL+S DV ++ P + + + +T + I +Y P
Sbjct: 132 LATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQY 191
Query: 254 LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR-TVGRDYAQE 311
L + GD D +PGI PG G KTA K + +GSL+ L+ N +VR VG E
Sbjct: 192 PDLAALRGDPSDNLPGI----PGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVG-----E 242
Query: 312 ALTKHADYLRRNYEVLAL 329
AL H + RN E+ L
Sbjct: 243 ALRTHLASVVRNRELTEL 260
>gi|333919148|ref|YP_004492729.1| DNA polymerase I [Amycolicicoccus subflavus DQS3-9A1]
gi|333481369|gb|AEF39929.1| DNA polymerase I [Amycolicicoccus subflavus DQS3-9A1]
Length = 900
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R + P YKA+R K + RG+V DVL +PV+ G EADD+I
Sbjct: 71 RAETFPEYKANRSKTPDEF-------RGQV----DLTKDVLAAMGIPVMAEPGFEADDII 119
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q GY+ ++ + D+D QL+S+ V ++ P + + + +T + A+Y P
Sbjct: 120 ATLTTQATGLGYQVLICTGDRDALQLVSDAVTVLYPKRGVSDLTRFTPEAVEAKYGLSPQ 179
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA-AVRTVGRDYAQ 310
+ GD D +PGI PG G KTA K ++++GSLE L+ AVR
Sbjct: 180 QYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLETLVEKVDAVR-------- 227
Query: 311 EALTKHADYLRRNYEVLALRR 331
K D LR+N + + R
Sbjct: 228 ---GKVGDALRQNLSSVLMNR 245
>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
Length = 876
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 160 YTPETVEEKYGLTPEQMVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L ++ D + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRR 248
>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
Length = 857
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD G T R++L +YKA R L Q R+ +HQF P+++
Sbjct: 28 VFDAPGPT-FRQELYEAYKAQRPPMPTDLR-EQLPWIDRLVTAHQF----------PILR 75
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G+EADDVI TL Q L+ G+ ++ + DKDF QLI V++V L+D+ Y +
Sbjct: 76 VPGYEADDVIGTLTRQALEAGHEVMIVAGDKDFAQLIGPRVRMVDTLRDVT----YDAEL 131
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + +VGD VD VPG VPG G K A+ LL+++G L +L
Sbjct: 132 VRKKWGVRPEQIIDYLALVGDKVDNVPG----VPGIGAKGAVALLERYGDLAGIL 182
>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
43184]
gi|423723105|ref|ZP_17697258.1| DNA polymerase I [Parabacteroides merdae CL09T00C40]
gi|154085961|gb|EDN85006.1| DNA-directed DNA polymerase [Parabacteroides merdae ATCC 43184]
gi|409241530|gb|EKN34298.1| DNA polymerase I [Parabacteroides merdae CL09T00C40]
Length = 940
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKRENPTHIAVGFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R++ + + +S FI D++ N+P++++ +E
Sbjct: 62 GPT-FRHEAYEQYKAQRQE-----------TPEDIRKSVPFIKDIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGD-YEIMGVPEVLDKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + G++ENLL
Sbjct: 169 GLTSVDQVIDLLGLMGDSSDNIPG----CPGVGEKTAQKLLAEFGTIENLL 215
>gi|453075277|ref|ZP_21978065.1| DNA polymerase I [Rhodococcus triatomae BKS 15-14]
gi|452763567|gb|EME21848.1| DNA polymerase I [Rhodococcus triatomae BKS 15-14]
Length = 909
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA+R T F +G+V + +VLG +P
Sbjct: 73 VAAAFDVSRQT-FRAEAYPEYKANRS------TTPDEF-KGQV----EITKEVLGAMGIP 120
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADDVIATL Q +G+R +V + D+D QL+++DV ++ P + + + +T
Sbjct: 121 VMAEAGFEADDVIATLTTQATAEGFRVLVCTGDRDALQLVTDDVTVLYPRKGVSDLTRFT 180
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + GD D +PGI PG G KTA K +++ GS L+
Sbjct: 181 PAAVEEKYGLTPRQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREFGSFTELV-- 234
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D E K D LR N + + R
Sbjct: 235 --------DRVDEVRGKVGDALRANLSAVVMNR 259
>gi|435853194|ref|YP_007314513.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
gi|433669605|gb|AGB40420.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
Length = 856
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 37/237 (15%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS----------FG---RWLSLFFDQVSHADPVIAV 122
SK+R++ LD N L Y + P + FG LSL +Q D +
Sbjct: 2 SKQRLYLLDGNSLVYRAFYALPDTLTTSDGTVTNAVFGFTKMLLSLIDNQA--PDLIGIA 59
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVV 180
FD +G T R + YKA+R++ +L HQF L +V+ +P
Sbjct: 60 FDAQGAT-FRHEEYEEYKANRKETPDKL-------------KHQFDLVKEVVDALEIPRF 105
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
++E EADD+I TL + ++ Y+ + + D+D QLIS++++++ + + Y +
Sbjct: 106 EVESLEADDLIGTLAIEAEKEDYKVTIVTGDRDALQLISDNIEIMYTKRGISNIIRYDVD 165
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ Y DP + + ++GD D +PG V G G KT+ KLLK+ G LE +L+
Sbjct: 166 KFREDYELDPEQLVDKKALMGDKSDNIPG----VDGIGDKTSTKLLKEFGGLEEVLD 218
>gi|383307470|ref|YP_005360281.1| DNA polymerase I [Mycobacterium tuberculosis RGTB327]
gi|380721423|gb|AFE16532.1| DNA polymerase I [Mycobacterium tuberculosis RGTB327]
Length = 922
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 51 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 98
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 99 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 158
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 159 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 214
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 215 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 244
>gi|405375773|ref|ZP_11029795.1| DNA polymerase I [Chondromyces apiculatus DSM 436]
gi|397085938|gb|EJJ17096.1| DNA polymerase I [Myxococcus sp. (contaminant ex DSM 436)]
Length = 909
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 24/213 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V FD E TE R+++ P+YKA+R L +F+ I V+ NVP
Sbjct: 62 VALAFDKESRTE-RQKIDPTYKANREGPPEDLIP--QFA---------LIRRVVEAINVP 109
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+++ G EADDVI TL + Q+G+ V + DKDF Q++ +DV+L P++D+ +T
Sbjct: 110 VLEVAGWEADDVIGTLAVKAKQEGFCVQVVTGDKDFVQIVDDDVRLYDPMKDV-----HT 164
Query: 239 LKHYI-AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
L + A+ +P ++GD VD VP VPG G KTA +L+++ G++E LL
Sbjct: 165 LPADVKARLGIEPGQMRDYLALIGDAVDNVPK----VPGIGPKTATELIQQFGNVETLLE 220
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ V + +E + H + L R +++ +
Sbjct: 221 --RLEEVKKPKIRENIASHRESLLRAKQLVTFK 251
>gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
Length = 904
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|15608767|ref|NP_216145.1| Probable DNA polymerase I PolA [Mycobacterium tuberculosis H37Rv]
gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
gi|253799333|ref|YP_003032334.1| DNA polymerase I [Mycobacterium tuberculosis KZN 1435]
gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
gi|375296578|ref|YP_005100845.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
gi|378771370|ref|YP_005171103.1| DNA polymerase I [Mycobacterium bovis BCG str. Mexico]
gi|392386300|ref|YP_005307929.1| polA [Mycobacterium tuberculosis UT205]
gi|392432789|ref|YP_006473833.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
gi|397673483|ref|YP_006515018.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
gi|422812615|ref|ZP_16860999.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
gi|449063687|ref|YP_007430770.1| DNA polymerase I [Mycobacterium bovis BCG str. Korea 1168P]
gi|61223052|sp|P0A550.1|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
gi|61223053|sp|P0A551.1|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
gi|341601554|emb|CCC64227.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Moreau RDJ]
gi|356593691|gb|AET18920.1| DNA polymerase I [Mycobacterium bovis BCG str. Mexico]
gi|378544851|emb|CCE37126.1| polA [Mycobacterium tuberculosis UT205]
gi|379027852|dbj|BAL65585.1| DNA polymerase I [Mycobacterium tuberculosis str. Erdman = ATCC
35801]
gi|392054198|gb|AFM49756.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
gi|395138388|gb|AFN49547.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
gi|440581095|emb|CCG11498.1| putative DNA POLYMERASE I POLA [Mycobacterium tuberculosis 7199-99]
gi|444895137|emb|CCP44393.1| Probable DNA polymerase I PolA [Mycobacterium tuberculosis H37Rv]
gi|449032195|gb|AGE67622.1| DNA polymerase I [Mycobacterium bovis BCG str. Korea 1168P]
gi|740010|prf||2004291B DNA polymerase I
Length = 904
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|433626721|ref|YP_007260350.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140060008]
gi|432154327|emb|CCK51559.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140060008]
Length = 904
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|399889290|ref|ZP_10775167.1| DNA polymerase I [Clostridium arbusti SL206]
Length = 869
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 34/232 (14%)
Query: 80 KRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFDGE 126
+R+ LD N L + P+L + +G ++++ F P ++ FD +
Sbjct: 2 ERLLILDGNSLMNRAFYAIPALNNSEGLNTNAIYG-FINMLFKMKEELKPDYIVTTFDKK 60
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKIEG 184
T R + YKA R+K +L + QF + ++L K + + +IEG
Sbjct: 61 APT-FRHKEYKDYKAGRKKMPPEL-------------AEQFPVVKELLEKLAINIFEIEG 106
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL KG + + DKD QL +++++V+ + + Y ++
Sbjct: 107 FEADDLIGTLAYFSRDKGIEVYIITGDKDALQLADDNIKIVINKKGMTEKEIYDKDRMLS 166
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y P + ++ ++GD D +PG VPG G KTALKL+K++GS+EN+L
Sbjct: 167 DYGVTPKQFIDVKGLMGDSSDNIPG----VPGIGEKTALKLIKEYGSVENVL 214
>gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
Length = 904
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|339631685|ref|YP_004723327.1| DNA polymerase I [Mycobacterium africanum GM041182]
gi|339331041|emb|CCC26713.1| putative DNA polymerase I POLA [Mycobacterium africanum GM041182]
Length = 904
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Thermoanaerobacter tengcongensis MB4]
Length = 871
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD + T R + YKA R+ +L+ + + +V+ N
Sbjct: 51 DYVAIAFDKKAPT-FRHKEFKEYKATRQAMPEELS-----------EQVELLKEVIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG V+ + D+D QLIS V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTVSKMAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PGI P G KTA+KLLK+ GS+ENLL
Sbjct: 159 FDEKAVLERYEITPQQFVDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKEFGSVENLL 214
>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
Length = 922
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 21/199 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD G T R L P YK HR L R ++ H+ ++ +LG
Sbjct: 57 ADYAACVFDASGPT-FRDALYPEYKQHRAPMPDDL-------RAQIEPIHE-VVRLLG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PV+ I G EADDVI TL +G + V++S DKD QL++E++ ++ + R
Sbjct: 106 -WPVLCIPGVEADDVIGTLAATAAGQGMQVVISSGDKDLSQLVNENITIIDTMNGKKR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG VP G KTA K L ++GSL+ L
Sbjct: 163 --DVAGVTAEFGVPPTLMVDYQALVGDAVDNVPG----VPKVGPKTAAKWLTEYGSLDAL 216
Query: 296 L-NAAAVRTVGRDYAQEAL 313
L NA A++ V + + AL
Sbjct: 217 LANAGAIKGVAGENLRGAL 235
>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
Length = 871
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD + T R + YKA R+ +L+ + + +V+ N
Sbjct: 51 DYVAIAFDKKAPT-FRHKEFKEYKATRQAMPEELS-----------EQVELLKEVIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG V+ + D+D QLIS V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTVSKMAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PGI P G KTA+KLLK+ GS+ENLL
Sbjct: 159 FDEKAVLERYEITPQQFVDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKEFGSVENLL 214
>gi|407768162|ref|ZP_11115541.1| DNA polymerase I [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288875|gb|EKF14352.1| DNA polymerase I [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 941
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 34/267 (12%)
Query: 76 TKSKKRVFFLD-----------VNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVF 123
+KS +RV +D + P+ P +G L + + D + +F
Sbjct: 9 SKSPRRVVLVDGSGFIFRAFHALPPMTSPDGTPVNAVYGFCTMLMKLREDTKPDHMAVIF 68
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D +G + R P YKAHR +L +F I D N+P +++E
Sbjct: 69 DTKGKS-FRNDFYPEYKAHRPPPPEELVP--QFG---------LIRDATRAFNLPSIELE 116
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADD+IAT Q +G ++ S DKD QL+++ VQ+ +++ + L+
Sbjct: 117 GYEADDLIATYARQAEAEGSDVIIVSSDKDLMQLVTDRVQMFDAMKNRTIGAPEVLE--- 173
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
++ P + ++ + GD VD VPG VPG G KTA +L+ ++G L+ LL A
Sbjct: 174 -KFGVTPDKVIDIQALAGDSVDNVPG----VPGIGIKTAAQLIDEYGDLDGLLERAG--E 226
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALR 330
+ + +E L ++A+ R + +++ L+
Sbjct: 227 IKQPKRREKLIENAELARISRDLVTLK 253
>gi|423457177|ref|ZP_17433974.1| DNA polymerase I [Bacillus cereus BAG5X2-1]
gi|401148954|gb|EJQ56437.1| DNA polymerase I [Bacillus cereus BAG5X2-1]
Length = 891
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 226
>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
Length = 878
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPETVEEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L ++ D + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRR 250
>gi|409195816|ref|ZP_11224479.1| DNA polymerase I [Marinilabilia salmonicolor JCM 21150]
Length = 924
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 19/229 (8%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
++ K++F LD L + P + S G S F + ++ V + E T
Sbjct: 2 SEQTKKLFLLDAYALIFRAYYAFIRNPRVNSKGLNTSAIF---GFTNSLLEVLNKENPTH 58
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
PS R + ++ A++ + + ++ +I +L N+ V++++G EADDV
Sbjct: 59 IAVAFDPSGPTFRNELFKEYKANRDATPEDIKKAVPYIKQILEAFNISVIQVDGFEADDV 118
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL---QDLDRWSFYTLKHYIAQYN 247
+ TL + G++ + +PDKD+ QL++ D + P D++RW ++ +++
Sbjct: 119 VGTLSRKAGTAGFKTFMVTPDKDYAQLVTADTVMYKPKSAGNDIERWGIPEIQK---KFS 175
Query: 248 CD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ P + L + GD D +PG PG G K A ++ K+GS+EN+
Sbjct: 176 VEKPEQVIDLLALWGDSADNIPG----CPGIGEKRAKDIIGKYGSVENV 220
>gi|336320730|ref|YP_004600698.1| DNA polymerase I [[Cellvibrio] gilvus ATCC 13127]
gi|336104311|gb|AEI12130.1| DNA polymerase I [[Cellvibrio] gilvus ATCC 13127]
Length = 902
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 118/253 (46%), Gaps = 28/253 (11%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPS 138
R FF L V +P+ FG + S+ + + P +AV G T R + +
Sbjct: 20 RAFFALPVENFATSSGQPTNAVFG-FTSMLANLLRDEQPTHVAVAFDLGRTTFRTEEYEA 78
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YK R A+ RG+V I VL ++PV+ E +EADDVIATL Q
Sbjct: 79 YKGTR-------DATPEPFRGQV----DVIRRVLEPLHIPVLTKERYEADDVIATLATQA 127
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
+G + ++ S D+D QL+ +DV ++ P++ + + T A+Y P L
Sbjct: 128 TAQGMQVLICSGDRDAFQLVDDDVTVLYPVRGVSELARMTPAAVEAKYGVPPQRYSDLAA 187
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
+VG+ D +PG VPG G KTA K L +HG L+ ++ AAA R G K +
Sbjct: 188 LVGETSDNLPG----VPGVGPKTAAKWLTQHGDLDGVV-AAADRITG---------KAGE 233
Query: 319 YLRRNYEVLALRR 331
LR N + L R
Sbjct: 234 SLRANLAQVQLNR 246
>gi|443243656|ref|YP_007376881.1| DNA polymerase I [Nonlabens dokdonensis DSW-6]
gi|442801055|gb|AGC76860.1| DNA polymerase I [Nonlabens dokdonensis DSW-6]
Length = 945
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFDG 125
KR+F LD L + G P + S G + + FD + P + FD
Sbjct: 9 KRLFLLDAYALIFRGYYALIKNPRINSAGMDTSAIMGFTNSLFDVIRREKPEYLAVAFDK 68
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
EG E R ++ YKA+R + + + + +I +L ++P+V+ G
Sbjct: 69 EGSKE-RVEMYADYKANRDE-----------TPEAIKIAVPYIQKILKAMHIPIVEEAGI 116
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL Q ++G+ + +PDKD+ QL+SE++ + P + + + + +
Sbjct: 117 EADDLIGTLAKQAEKEGFTTYMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKK 176
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + P + ++GD D +PG+ PG G KTA K + +GS+E LL
Sbjct: 177 FEVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIAAYGSMEGLL 224
>gi|407707101|ref|YP_006830686.1| DeoR family transcriptional regulator [Bacillus thuringiensis MC28]
gi|407384786|gb|AFU15287.1| DNA polymerase I [Bacillus thuringiensis MC28]
Length = 890
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 67 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 115 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 175 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 225
>gi|354603286|ref|ZP_09021285.1| hypothetical protein HMPREF9450_00200 [Alistipes indistinctus YIT
12060]
gi|353349163|gb|EHB93429.1| hypothetical protein HMPREF9450_00200 [Alistipes indistinctus YIT
12060]
Length = 1094
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPVI--AVFDG 125
+R+F +D L + RP S G S F D + +P + FD
Sbjct: 48 ERLFLIDAYALIFRAYYAFIGRPMRNSEGLNTSAIFGFVKFLRDLIRREEPRLLGVAFDP 107
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG R ++ P YKA+R + A+ +I VL +PV+++ G+
Sbjct: 108 KGGN-FRHEIYPQYKANREATPEDIIAAV-----------PYIKRVLEAMRIPVIEVPGY 155
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL + GY + +PDKD+ QLI V++ + D +
Sbjct: 156 EADDVIGTLSMKAAGAGYEVYMVTPDKDYGQLIRPTVRIYKQRKGGDGIEVIGCEQIREH 215
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
Y DP + + + GD D +PG VPG G K+A+KL+ + G++ENLL
Sbjct: 216 YGIDDPCRVIDILALWGDASDNIPG----VPGIGEKSAIKLVCEFGTVENLLE 264
>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
Length = 891
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 226
>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
Length = 878
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPETVEEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L ++ D + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRR 250
>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
Length = 878
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPETVEEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L ++ D + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRR 250
>gi|423400568|ref|ZP_17377741.1| DNA polymerase I [Bacillus cereus BAG2X1-2]
gi|401655292|gb|EJS72826.1| DNA polymerase I [Bacillus cereus BAG2X1-2]
Length = 877
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|423612761|ref|ZP_17588622.1| DNA polymerase I [Bacillus cereus VD107]
gi|401244749|gb|EJR51108.1| DNA polymerase I [Bacillus cereus VD107]
Length = 877
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIRELLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
Length = 890
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 67 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 115 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 175 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 225
>gi|423484150|ref|ZP_17460840.1| DNA polymerase I [Bacillus cereus BAG6X1-2]
gi|401139176|gb|EJQ46739.1| DNA polymerase I [Bacillus cereus BAG6X1-2]
Length = 877
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI +VL NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREVLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGLHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 TEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
Length = 890
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 67 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 115 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 175 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 225
>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
Length = 874
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 17/200 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+IAV +G R Q+ YK+HR+ + G + + +VL +P
Sbjct: 53 LIAVAFDKGRETFRSQVYAEYKSHRQA-----------TPGELSEQFALVHEVLAAFGIP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V++ G+EADD+I TL Q ++ Y + + D+D QLI ++++ + +
Sbjct: 102 VLEKPGYEADDIIGTLAAQASRQDYDVFIVTGDRDALQLIGPRTKVMLTRKGISETELVD 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P L+ ++GD D +PG VPG G KTA KLL++ GS+ENLL
Sbjct: 162 INVLQEKYGLLPEQITDLKGLMGDASDNIPG----VPGIGEKTAGKLLREFGSVENLL-- 215
Query: 299 AAVRTVGRDYAQEALTKHAD 318
A + V QE+L +A+
Sbjct: 216 ANIDKVSGKKLQESLRANAE 235
>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
Length = 890
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 67 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 115 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 175 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 225
>gi|423615029|ref|ZP_17590863.1| DNA polymerase I [Bacillus cereus VD115]
gi|401261885|gb|EJR68036.1| DNA polymerase I [Bacillus cereus VD115]
Length = 877
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|148263291|ref|YP_001229997.1| ribonuclease H [Geobacter uraniireducens Rf4]
gi|146396791|gb|ABQ25424.1| Ribonuclease H [Geobacter uraniireducens Rf4]
Length = 484
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 113/250 (45%), Gaps = 23/250 (9%)
Query: 84 FLDVNPLCYEGSRPSLQSFG-RWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
+ V L G P+ FG + L Q + D + V D RR+L P+YKAH
Sbjct: 20 YYGVRDLATSGGMPTNAVFGFTRMLLGLLQENRPDYLAVVLDPPREETFRRELYPAYKAH 79
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R L +I +L N+P ++ G EADDVIATL + +G
Sbjct: 80 RDAMPADLVPQL-----------PYIRQILQALNIPALEAPGFEADDVIATLARRYAAEG 128
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
V + DKD Q++ + + L+ ++DL + + ++ P + + GD
Sbjct: 129 IEVTVVTGDKDLLQIVGDGINLLDTMKDLRSGP----QEVLDRFGVPPELVPDVLGLAGD 184
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRR 322
D +PG VPG G KTA +L+++ GSLE +L ++ V +E L HAD R
Sbjct: 185 TSDNIPG----VPGIGEKTAAELVRRFGSLEGVLQWKSL--VNGKQRRENLHAHADQARL 238
Query: 323 NYEVLALRRY 332
+ + LA RY
Sbjct: 239 S-KTLATVRY 247
>gi|357386727|ref|YP_004901451.1| DNA polymerase I [Pelagibacterium halotolerans B2]
gi|351595364|gb|AEQ53701.1| DNA polymerase I [Pelagibacterium halotolerans B2]
Length = 963
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD GT R +L YKAHR + L +R + F L P ++
Sbjct: 60 IFD-YSGTSFRNELYDQYKAHRPEAPEDLIPQFPLTRAA---TRAFCL--------PSIE 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED-VQLV----MPLQDLDRWSF 236
EG+EADD+IAT Q+ +G + + S DKD QLI +D VQ++ P Q RW
Sbjct: 108 QEGYEADDIIATYACQMRDRGGKVTIVSSDKDLMQLIDDDHVQMLDTIARPGQPPMRW-- 165
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + ++ P + ++ + GD VD VPGI PG G KTA L+ ++G LE LL
Sbjct: 166 MGPEEVMKKFGVTPDKVVDVQSLCGDPVDNVPGI----PGIGVKTAALLINEYGDLETLL 221
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
A+ + + +E++ +HAD R + +++ L
Sbjct: 222 ARAS--EIKQQKRRESIIEHADLARISKKLVQL 252
>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
Length = 892
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 23/191 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRK----FLRQLTASQRFSRGRVGRSHQFILDVL 172
D + V D +GG++ R+ +L +YKA+R L Q+ + ++D L
Sbjct: 55 DACVFVLDSKGGSKKRKDILETYKANRPSTPDLLLEQIPYVEE------------LVDAL 102
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
G + V+KIEG EADD+IATL + + + + DKD QL+S+ V + + +
Sbjct: 103 G---IKVLKIEGFEADDIIATLSKKFESDFEKVNIITGDKDLLQLVSDKVFVWRVERGIT 159
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
Y I +Y P +VGD +D +PG++ G G+KTA+ LLKK+ SL
Sbjct: 160 DLVLYDRNKVIEKYGIYPEQFKDYLSLVGDQIDNIPGVK----GIGKKTAVSLLKKYNSL 215
Query: 293 ENLLNAAAVRT 303
EN+L + T
Sbjct: 216 ENVLKNINLLT 226
>gi|423440678|ref|ZP_17417584.1| DNA polymerase I [Bacillus cereus BAG4X2-1]
gi|423533095|ref|ZP_17509513.1| DNA polymerase I [Bacillus cereus HuB2-9]
gi|402418809|gb|EJV51098.1| DNA polymerase I [Bacillus cereus BAG4X2-1]
gi|402464328|gb|EJV96024.1| DNA polymerase I [Bacillus cereus HuB2-9]
Length = 877
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|423377571|ref|ZP_17354855.1| DNA polymerase I [Bacillus cereus BAG1O-2]
gi|423547872|ref|ZP_17524230.1| DNA polymerase I [Bacillus cereus HuB5-5]
gi|423622339|ref|ZP_17598117.1| DNA polymerase I [Bacillus cereus VD148]
gi|401178309|gb|EJQ85489.1| DNA polymerase I [Bacillus cereus HuB5-5]
gi|401261479|gb|EJR67639.1| DNA polymerase I [Bacillus cereus VD148]
gi|401638420|gb|EJS56170.1| DNA polymerase I [Bacillus cereus BAG1O-2]
Length = 877
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
Length = 946
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 31/235 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVF 123
+ KR+F LD L + G P + S G + + FD + P + F
Sbjct: 7 NDKRLFLLDAYALIFRGYYALIKNPRINSAGMDTSAIMGFTNSLFDVIRREKPEYLAVAF 66
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D EG E R +L YKA+R + + + + +I +L ++P+V+
Sbjct: 67 DKEGSKE-RVELYADYKANRDE-----------TPEAIKIAVPYIQQILKAMHIPIVEEA 114
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+I TL Q ++G+ + +PDKD+ QL+S+++ + P + + + +
Sbjct: 115 GIEADDLIGTLAKQAEKEGFTTYMVTPDKDYAQLVSDNIFMYKPARMGNGIEIWGIPEVQ 174
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ + P + ++GD D +PG+ PG G KTA K + +GS+E LL+
Sbjct: 175 KKFEVERPEQVIDYLGMMGDASDNIPGL----PGVGDKTAKKFIAAYGSMEGLLD 225
>gi|423449152|ref|ZP_17426031.1| DNA polymerase I [Bacillus cereus BAG5O-1]
gi|423463743|ref|ZP_17440511.1| DNA polymerase I [Bacillus cereus BAG6O-1]
gi|423541641|ref|ZP_17518032.1| DNA polymerase I [Bacillus cereus HuB4-10]
gi|401128601|gb|EJQ36290.1| DNA polymerase I [Bacillus cereus BAG5O-1]
gi|401171174|gb|EJQ78407.1| DNA polymerase I [Bacillus cereus HuB4-10]
gi|402421287|gb|EJV53547.1| DNA polymerase I [Bacillus cereus BAG6O-1]
Length = 877
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
Length = 878
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLNAYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 102 IPAYELDRYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPETVEEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L ++ D + ++ A+RR
Sbjct: 218 --ASIDEIKGEKLKENLRQYRDLALLSKQLAAIRR 250
>gi|397691563|ref|YP_006528817.1| DNA polymerase I [Melioribacter roseus P3M]
gi|395813055|gb|AFN75804.1| DNA polymerase I [Melioribacter roseus P3M]
Length = 927
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 30/231 (12%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFD 124
+K+ +D L Y+G SRP S G +LS F + P V FD
Sbjct: 3 RKKFVIIDAMSLAYKGYYAFISRPLYTSKGEPTSAVYGFLSQLFKILEDTKPDYVAIAFD 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R +YK+ R + ++ ++ R I +++ N+P+ + G
Sbjct: 63 SKEKT-FRHDRYENYKSSREEMPEEMVP-------QIAR----IKEIIEAFNIPIYILPG 110
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I T V + + G A +PDKD+ QLI++ V+++ P + D K
Sbjct: 111 YEADDLIGTAVRKAAEAGLTAYAITPDKDYVQLINDSVKVIKPGKSTDEIVVIDEKKVEE 170
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+Y P + +VGD D +PG V G G KTA L++K GSLE +
Sbjct: 171 EYGIKPSQMVDYLALVGDSSDDIPG----VAGIGPKTAAPLIRKFGSLEKI 217
>gi|433634680|ref|YP_007268307.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070017]
gi|432166273|emb|CCK63766.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070017]
Length = 906
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VLG + V+
Sbjct: 63 RDEAPTHVAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLGALGITVLAEP 122
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T + +
Sbjct: 123 GFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVV 182
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL +L+ N AVR
Sbjct: 183 EKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDNVDAVR 238
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLALRR 331
VG +AL + + RN E+ L R
Sbjct: 239 GKVG-----DALRANLASVVRNRELTDLVR 263
>gi|423470787|ref|ZP_17447531.1| DNA polymerase I [Bacillus cereus BAG6O-2]
gi|402434525|gb|EJV66563.1| DNA polymerase I [Bacillus cereus BAG6O-2]
Length = 877
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
Length = 937
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 24/217 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P+ VFD +G T R +L YKA+R L R +V Q I D++ +
Sbjct: 80 PIAVVFDAKGKT-FRDELFAEYKANRPPMPEDL-------RPQV----QPIHDIVQAMGL 127
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P++ IEG EADDVI TL Q ++ ++++ DKD QL++E V LV + D S
Sbjct: 128 PLLVIEGVEADDVIGTLARQATEQKRDVIISTGDKDMAQLVNEHVTLVNTMTD----SVL 183
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL- 296
+ A+Y P + ++GD VD +PG VPG G KTA L++ GSL+ +
Sbjct: 184 DIPGVHAKYGFGPELMIDYLALMGDKVDNIPG----VPGVGEKTAQGLIQGIGSLDAIYT 239
Query: 297 NAAAVRTV---GRDYAQEALTKHADYLRRNYEVLALR 330
+ VR++ G E L +H D +Y++ ++
Sbjct: 240 DLEKVRSLSFRGAKTMPEKLIEHRDMAYLSYQLATIK 276
>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
Length = 557
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 32/236 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAV-FDG 125
K++F LD L Y P + S GR + S D ++ P +AV FD
Sbjct: 3 KKLFLLDAMALIYRAYYALIRSPRITSKGRNTNAQFGFTSTLIDLINKEKPTHLAVCFDT 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
E TE R YKA+R+ L ++ I ++ N+PVV+++G+
Sbjct: 63 EAATE-RHTDFAEYKANRQAAPEDLISAL-----------PDIKKIITAFNIPVVELDGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQ-LISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADDVI TL Q KGY + +PDKD+ Q LI +V + P + K
Sbjct: 111 EADDVIGTLAWQAADKGYEVFMVTPDKDYGQLLIHNNVFIYKPPYQGGKEDILDAKKICE 170
Query: 245 QYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ + + + + ++GD VD +PGI G G KTA KLLK+ +LEN+L A
Sbjct: 171 KWGIERVDQVVDMLGLMGDAVDNIPGI----AGIGEKTACKLLKEFDNLENILANA 222
>gi|392416419|ref|YP_006453024.1| DNA polymerase I [Mycobacterium chubuense NBB4]
gi|390616195|gb|AFM17345.1| DNA polymerase I [Mycobacterium chubuense NBB4]
Length = 923
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH + A FD T R++ P YK R +A+ RG++ +
Sbjct: 83 EQPSH---IAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQI----DITKE 127
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG + V+ G EADDVIATL Q +GYR +V + D+D QL+S+DV ++ P +
Sbjct: 128 VLGALGITVLAEAGFEADDVIATLATQAQDEGYRVLVVTGDRDTLQLVSDDVTVLYPRKG 187
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T + +Y P + GD D +PGI PG G KTA K + ++G
Sbjct: 188 VSELTRFTPEAVQEKYGLTPSQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYG 243
Query: 291 SLENLLN 297
SL++L++
Sbjct: 244 SLQSLID 250
>gi|423452131|ref|ZP_17428984.1| DNA polymerase I [Bacillus cereus BAG5X1-1]
gi|401142202|gb|EJQ49751.1| DNA polymerase I [Bacillus cereus BAG5X1-1]
Length = 877
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G+ V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
Length = 949
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 18/226 (7%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQ 134
K++F +D + Y P + S G S F V+ + V+ E T
Sbjct: 2 KKLFLVDAYAIIYRAYYAFIRNPRVNSKGLNTSAIFGFVNTLEDVLK---REKPTHIAVA 58
Query: 135 LLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATL 194
P K R + Q A + + + + I +++ N+P ++I G+EADDVI T+
Sbjct: 59 FDPKGKTFRHEAYEQYKAQREATPEDIRLAVPIIKNLIKAYNIPALEIPGYEADDVIGTM 118
Query: 195 VGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL--KHYIAQYNCDPHS 252
+ Q G+ + +PDKD+ QL+S+ + + P F T+ A+Y+ D H
Sbjct: 119 AKKAEQAGFEVFMLTPDKDYGQLVSDHIFMYRPKH---TGGFETMGPDEVKAKYDLDSHE 175
Query: 253 E-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ + L ++GD D +PG PG G KTA+KLLK+ GS++ LL+
Sbjct: 176 QVIDLLGLMGDASDNIPG----CPGVGEKTAVKLLKEFGSIDTLLS 217
>gi|400537314|ref|ZP_10800847.1| DNA polymerase I [Mycobacterium colombiense CECT 3035]
gi|400329343|gb|EJO86843.1| DNA polymerase I [Mycobacterium colombiense CECT 3035]
Length = 905
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 23/213 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R + P YKA+R +A+ RG++ + + VL +
Sbjct: 70 IAAAFDVSRQT-FRSERYPEYKANR-------SATPDEFRGQIDITKE----VLAALGIT 117
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ EG EADD+IATL Q +GYR +V + D+D QL+S++V ++ P + + + +T
Sbjct: 118 VLAEEGFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFT 177
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ +Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N
Sbjct: 178 PDAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIGEYGSLQALVDN 233
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLAL 329
+VR VG +AL +H + RN E+ L
Sbjct: 234 VDSVRGKVG-----DALREHLASVIRNRELTDL 261
>gi|410657558|ref|YP_006909929.1| DNA polymerase I [Dehalobacter sp. DCA]
gi|410660593|ref|YP_006912964.1| DNA polymerase I [Dehalobacter sp. CF]
gi|409019913|gb|AFV01944.1| DNA polymerase I [Dehalobacter sp. DCA]
gi|409022949|gb|AFV04979.1| DNA polymerase I [Dehalobacter sp. CF]
Length = 952
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 30/258 (11%)
Query: 73 LEKTKSKKRVFFLDVNPLCYEG--SRPSLQS--------FGRWLSLFF--DQVSHADPVI 120
LE++ + R+ LD N L Y + P L S +L++ F + D +
Sbjct: 14 LERSITMPRMLILDGNSLIYRAFYALPPLNSDEGLPTNAVHGFLTMLFRLQKEQKPDYWV 73
Query: 121 AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
FD T Q YKAHR++ L ++ ++L VP++
Sbjct: 74 VAFDKTKATVRIEQF-AGYKAHRKETPETLRPQ-----------FNYLKEILRVMAVPML 121
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
++EG+EADD+IAT+ + + ++ + D+D QLIS +++ ++ + Y +
Sbjct: 122 ELEGYEADDIIATVNDLAIAQQIEVLIFTGDRDALQLISPHSSVLLTMKGISEVECYNEQ 181
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
+Y P + L+ ++GD D +PGI PG G KTALKLL ++GS+EN+L
Sbjct: 182 RLEERYLLKPAQIIDLKGLMGDASDNIPGI----PGVGEKTALKLLHEYGSVENVLQNK- 236
Query: 301 VRTVGRDYAQEALTKHAD 318
V + +E L ++AD
Sbjct: 237 -DEVKGNKLKELLNQYAD 253
>gi|333912942|ref|YP_004486674.1| DNA polymerase I [Delftia sp. Cs1-4]
gi|333743142|gb|AEF88319.1| DNA polymerase I [Delftia sp. Cs1-4]
Length = 947
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD G T R L P YKAHR L R ++ H+ ++ +LG
Sbjct: 57 ADYAVCVFDTSGPT-FRDTLYPEYKAHRSPMPDDL-------RSQIEPIHE-VVRLLG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PV+ I+G EADDVI TL +G V++S DKD QL+ + ++ + R
Sbjct: 106 -WPVLAIQGVEADDVIGTLAKTAAAQGVNVVISSGDKDLSQLVDSHIMVMDTMSGKRR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG+ V P KTA+K L +HGSL+ L
Sbjct: 163 --DVAGVTAEFGVPPTQMIDYQALVGDAVDNVPGVSKVGP----KTAVKWLAEHGSLDGL 216
Query: 296 LNAA 299
+ AA
Sbjct: 217 IAAA 220
>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 856
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 25/186 (13%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFIL 169
+ D VI FD +G T R + YK R +F QL I
Sbjct: 50 ENPDQVIVFFDAKGET-FRHEAYKEYKEGRPPTPEEFKSQLL---------------LIK 93
Query: 170 DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ 229
+++ PV++IEG EADD IA++V ++L+ A+V + DKD QLI DV+++ P++
Sbjct: 94 EIMKYLGYPVIEIEGVEADDAIASVV-RILEGKGSALVLTADKDMLQLIRADVKVMRPIK 152
Query: 230 DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKH 289
+ + Y K + ++ P S ++GD VD +PGI PG G K A L++++
Sbjct: 153 GVSTFKVYDEKTFEEEFGFPPSSFPDYLSLIGDKVDNIPGI----PGIGSKRASALIQQY 208
Query: 290 GSLENL 295
GSLENL
Sbjct: 209 GSLENL 214
>gi|335042141|ref|ZP_08535168.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
containing protein [Methylophaga aminisulfidivorans MP]
gi|333788755|gb|EGL54637.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
containing protein [Methylophaga aminisulfidivorans MP]
Length = 872
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 24/217 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P+ +FD +G T R +L YKA R L R +V H D++ +
Sbjct: 13 PIAVIFDAKGKT-FRDELFAEYKAQRPPMPDGL-------RSQVQPVH----DIIKAMGL 60
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P++ I+G EADDVI T Q +KG V+++ DKD QL+++ V LV + + +
Sbjct: 61 PLLVIDGVEADDVIGTFARQATEKGLDVVISTGDKDMAQLVNQHVTLVNTMTE----TVL 116
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL- 296
++ ++ P + ++GD VD +PG VPG G KTAL LL+ GSL+++
Sbjct: 117 DIEGVKEKFGLPPELIIDFLALMGDKVDNIPG----VPGVGEKTALSLLQNLGSLKDIYA 172
Query: 297 NAAAVRTV---GRDYAQEALTKHADYLRRNYEVLALR 330
N AVR + G E L ++ + +Y++ ++
Sbjct: 173 NLEAVRELDFRGAKKMPEKLAENKEMADLSYQLATIK 209
>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
Length = 947
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD G T R L P YKAHR L R ++ H+ ++ +LG
Sbjct: 57 ADYAVCVFDTSGPT-FRDTLYPEYKAHRSPMPDDL-------RSQIEPIHE-VVRLLG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PV+ I+G EADDVI TL +G V++S DKD QL+ + ++ + R
Sbjct: 106 -WPVLAIQGVEADDVIGTLAKTAAAQGVNVVISSGDKDLSQLVDSHIMVMDTMSGKRR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG+ V P KTA+K L +HGSL+ L
Sbjct: 163 --DVAGVTAEFGVPPTQMIDYQALVGDAVDNVPGVSKVGP----KTAVKWLAEHGSLDGL 216
Query: 296 LNAA 299
+ AA
Sbjct: 217 IAAA 220
>gi|385998403|ref|YP_005916701.1| DNA polymerase I [Mycobacterium tuberculosis CTRI-2]
gi|344219449|gb|AEN00080.1| DNA polymerase I [Mycobacterium tuberculosis CTRI-2]
Length = 904
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLWSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|407473451|ref|YP_006787851.1| DNA polymerase I [Clostridium acidurici 9a]
gi|407049959|gb|AFS78004.1| DNA polymerase I [Clostridium acidurici 9a]
Length = 889
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
S K++ +D N L + + P L + +G +L++F+ + P + VFD
Sbjct: 2 SSKKLMIIDGNSLLHRAFYALPPLSTAEGIYTNGVYG-FLTMFYKVIDEYKPDYISVVFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKI 182
+G T R + YKA R K +L QF + +VL K N+ +++
Sbjct: 61 KKGPT-FRHKEFADYKAGRAKTPDELLT-------------QFPILKEVLDKLNISRLEL 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G EADD+ TLV ++G + S DKD+ QL SE +++ + + Y
Sbjct: 107 DGFEADDLAGTLVKMGEEQGLNVIAVSGDKDYLQLASEKTSILLTRKGITELEIYDYDEV 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y P + L+ ++GD D +PG VPG G KT +KLLK+ ++E +
Sbjct: 167 VKRYEMTPKQFIDLKGLMGDKSDNIPG----VPGIGEKTGVKLLKEFKTIEGI 215
>gi|383313124|ref|YP_005365925.1| DNA polymerase I [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|378931784|gb|AFC70293.1| DNA polymerase I [Candidatus Rickettsia amblyommii str. GAT-30V]
Length = 875
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD GG R Q+ P YKA+R L R DV N P
Sbjct: 56 VAVVFDS-GGKNFRHQIYPDYKANRPPPPEDLIVQLPLVR-----------DVASNLNFP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ G+EADD+IAT + G V+ S DKD QL++E++++ PL + + T
Sbjct: 104 ILEKNGYEADDIIATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPL----KGKYIT 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ ++ P + ++GD D +PG VP G KTA L+ + GS+EN+ N
Sbjct: 160 EDDVVKKFGTTPDKLREVMALIGDRSDNIPG----VPSIGPKTASSLIMQFGSVENIFN 214
>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
Length = 937
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 16/188 (8%)
Query: 153 SQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGY 203
S+ + + GRS + + V+ +P + EG+EADD++ATL + + G+
Sbjct: 77 SEEYGEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTFEGYEADDIVATLSARAEEAGW 136
Query: 204 RAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDD 263
AVV S D+D QLISE ++ P + + +A+Y P L +VG+
Sbjct: 137 EAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQYPELAALVGEA 196
Query: 264 VDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
D +PG+ V PGF A K LK++G L+ +L A A G+ EAL +H + +RRN
Sbjct: 197 ADNLPGVPGVGPGF----AAKWLKQYGDLDGVL-AHAHEITGKK--GEALREHLEDVRRN 249
Query: 324 YEVLALRR 331
+ AL R
Sbjct: 250 RRLNALVR 257
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ P YKA+R K L R G +P ++
Sbjct: 64 IFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVR--------LATQAFG---IPAIE 111
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
I+G EADD+IAT ++G+ + S DKD QL+S L D + ++H
Sbjct: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP----TTCLYDTVKEEKIDIEH 167
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN-LLNAAA 300
I ++ P + L+ + GD +D +PGI PG G KTA LL+++G+LEN L+NA+
Sbjct: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINASR 223
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ R +E + ++A+ R + +++ LR
Sbjct: 224 IKQKKR---RENILEYAETARLSRKLVMLR 250
>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
Length = 891
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELANYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + G++E +
Sbjct: 176 TEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFGTVEEV 228
>gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
gi|385991028|ref|YP_005909326.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5180]
gi|385994630|ref|YP_005912928.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5079]
gi|424803966|ref|ZP_18229397.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
gi|424947349|ref|ZP_18363045.1| DNA polymerase I [Mycobacterium tuberculosis NCGM2209]
gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
gi|339294584|gb|AEJ46695.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5079]
gi|339298221|gb|AEJ50331.1| DNA polymerase I [Mycobacterium tuberculosis CCDC5180]
gi|358231864|dbj|GAA45356.1| DNA polymerase I [Mycobacterium tuberculosis NCGM2209]
Length = 904
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLPPGQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|453329342|dbj|GAC88534.1| DNA polymerase I [Gluconobacter thailandicus NBRC 3255]
Length = 929
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD G R ++ P YKAHR + L R + G I D NVP ++
Sbjct: 60 IFDA-GRQTFRNEIYPQYKAHRPEPPEDL-------RPQFG----LIRDATAAFNVPSIE 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G EADD+IAT V+ +G R + S DKD QLI V+L+ P+ +
Sbjct: 108 LAGWEADDLIATYAKAVVAQGGRCTIVSSDKDLMQLICPGVELMDPM----KQKPIREAE 163
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
A++ P + ++ ++GD D VPG VPG G K A +L+ ++G+LE +L+AA
Sbjct: 164 VEAKFGVRPDQVVDVQALMGDSTDNVPG----VPGIGAKGAAQLINEYGTLEKVLDAA 217
>gi|383824735|ref|ZP_09979907.1| DNA polymerase I [Mycobacterium xenopi RIVM700367]
gi|383336801|gb|EID15196.1| DNA polymerase I [Mycobacterium xenopi RIVM700367]
Length = 911
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 19/213 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R P YKA+R +A F G++ +VL +
Sbjct: 75 VAAAFDVSRET-FRADRYPEYKANR------TSAPDEF-HGQI----DITKEVLAALGIT 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q ++GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 123 VLAEPGFEADDIIATLATQAEKEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFT 182
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ + +Y P + GD D +PGI PG G KTA K + ++GSLE L++
Sbjct: 183 PEAVVDKYGLTPKQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLEGLVD- 237
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
V TV + +AL H + RN E+ L R
Sbjct: 238 -NVDTV-KGKVGDALRAHLASVVRNRELTELIR 268
>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 430
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 25/216 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD V VFD +G T R ++ P YKAHR L R ++ H+ I+ +LG
Sbjct: 69 ADYVACVFDAKGPT-FRDEIYPEYKAHRDPMPDDL-------RSQIAPIHE-IVRLLGW- 118
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
V+ + G EADDVI TL +G +V+S DKD QL++E + ++ + R
Sbjct: 119 --KVLDVPGVEADDVIGTLAATAASQGIEVIVSSGDKDLAQLVNEHITIIDTMNGKRR-- 174
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
L A++ L + +VGD VD VPG+ V P KTA+K L+++GSL+ +
Sbjct: 175 --DLAGVEAEFGVPARLMLDYQTLVGDTVDNVPGVAKVGP----KTAVKWLQQYGSLQGV 228
Query: 296 L-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ NAA + V E L K D+L +L ++
Sbjct: 229 VDNAANIGGV----VGENLRKALDWLPTGRTLLTIK 260
>gi|359420852|ref|ZP_09212783.1| DNA polymerase I [Gordonia araii NBRC 100433]
gi|358243125|dbj|GAB10852.1| DNA polymerase I [Gordonia araii NBRC 100433]
Length = 930
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R + P YKA R K + RG+V + + VLG +P
Sbjct: 88 IAAAFDVSRKT-FRSERYPEYKAQRDKSPDEF-------RGQVDLTKE----VLGAMGIP 135
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V ++G EADDVIATL Q +K YR +V + D+D QL+ + ++ P + + + +T
Sbjct: 136 VFAVDGFEADDVIATLTTQAREKDYRVLVVTGDRDALQLVDPETTVLYPKRGVSELTRFT 195
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + GD D +PGI PG G KTA K ++++GSL L+
Sbjct: 196 PEEVEKKYGLTPQQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLVGLV-- 249
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D ++ K D LR N + R
Sbjct: 250 --------DNVEDVRGKVGDALRANLSAVLTNR 274
>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
Length = 931
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 95/184 (51%), Gaps = 20/184 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD G T R + P YKAHR +L R ++ H+ ++ +LG
Sbjct: 57 ADYAVCVFDASGPT-FRDVIYPEYKAHRPAMPEEL-------RAQIEPIHE-VVRLLGWA 107
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
V+ I G EADDVI TL Q+G + VV+S DKD QL++E + ++ + R
Sbjct: 108 ---VLAIPGVEADDVIGTLAHVAAQQGVQVVVSSGDKDLSQLVNERITIIDTMNGKKR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +A++ P + + +VGD VD VPG VP G KTA K L ++GSL+ L
Sbjct: 163 --DVAGVMAEFGVPPALMVDFQALVGDAVDNVPG----VPKVGPKTAAKWLSEYGSLDTL 216
Query: 296 LNAA 299
+ A
Sbjct: 217 MARA 220
>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
Length = 882
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
Query: 164 SHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED 221
S QF I ++L ++ ++EG+EADD+I TL Q ++ ++ V + DKD QL+SE
Sbjct: 84 SEQFPLIRELLDAFSIKRFELEGYEADDIIGTLTKQADEQAWKTTVITGDKDMLQLVSEH 143
Query: 222 VQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKT 281
V + + + + YT + +Y P + L+ ++GD D +PG VPG G KT
Sbjct: 144 VSVALTRKGVSEIEMYTPEEIHEKYGLKPLQIIDLKGLMGDSSDNIPG----VPGVGEKT 199
Query: 282 ALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
ALKLL ++GS+E +L + V QE L ++ D
Sbjct: 200 ALKLLHEYGSVEQVLE--NIDKVSGKKLQENLRENVD 234
>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
Length = 876
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 30/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
SKK++ +D N + Y + P L + +G + ++ + P V+ FD
Sbjct: 2 SKKKLVLIDGNSIAYRAFFALPLLNNDKGIHTNAIYG-FTTMLMKIMEEEKPTHVLVAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YK R+K +L S++F FI ++L + ++
Sbjct: 61 A-GKTTFRHETFTEYKGGRQKTPPEL--SEQFP---------FIRELLKAYGISHYELPN 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL + Q G+ V S DKD QL SE +++ + + YT +H
Sbjct: 109 YEADDIIGTLSKKAEQDGFSVKVISGDKDLTQLASEHTTVMITKKGITDMEEYTPEHIRE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
++ D + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 169 KWEIDVSQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFSSIEQLLES 218
>gi|327387327|gb|AEA72258.1| putative DNA polymerase I [uncultured bacterium]
Length = 729
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 89/180 (49%), Gaps = 20/180 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD G T R ++ YKA R L R ++ + + ++ +P
Sbjct: 57 VAVVFDAPGKT-FRDEMFEEYKAQRPPMPDDL-------RAQI----EPLYAIIRAMGLP 104
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ EG EADDVI TL Q KG V+++ DKD QL+SE + LV + + + Y
Sbjct: 105 LIIKEGVEADDVIGTLARQAEAKGQHVVISTGDKDMAQLVSEHITLVNTMSN----TVYD 160
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
++ +Y P + L + GD D +PG VPG G KTAL LL+ GS+E + NA
Sbjct: 161 VEEVQKKYGVGPELIIDLLALQGDSADNIPG----VPGVGEKTALALLQGIGSMEEIYNA 216
>gi|371777453|ref|ZP_09483775.1| DNA polymerase I [Anaerophaga sp. HS1]
Length = 921
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 21/176 (11%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD G T R L P YKA+R + + ++ +I +L N+ +V++
Sbjct: 63 FDPSGPT-FRNYLFPDYKANRED-----------TPEDIKKAVPYIKKILDAFNIKIVQV 110
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL---QDLDRWSFYTL 239
+G+EADDV+ TL G++ + +PDKD+ QL+++D+ + P D+++W +
Sbjct: 111 DGYEADDVVGTLSRMASNAGFKTFMVTPDKDYAQLVTDDIVMYKPKTAGNDIEKWGVEEI 170
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
K + P + L + GD D +PG PG G K A ++ K+GS+EN+
Sbjct: 171 KKKFSVEK--PEQVIDLLALWGDSADNIPG----CPGIGEKRAKIIIGKYGSIENV 220
>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
gi|189433083|gb|EDV02068.1| DNA-directed DNA polymerase [Bacteroides coprocola DSM 17136]
Length = 954
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIA---------VFDG 125
+++F LD L Y P + S G S V+ + V+ FD
Sbjct: 33 EKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAIMGFVNTLEDVLKKENPTHIGIAFDP 92
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + YKA R + + + S I D++ +P++++ G+
Sbjct: 93 AGPT-FRHEAFEQYKAQREE-----------TPEAIRLSVPIIKDIIRAYRIPILEVSGY 140
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL + ++G + +PDKD+ QL+SE+V + P + + A+
Sbjct: 141 EADDVIGTLATEAGKRGITTYMMTPDKDYGQLVSENVFMYRPKYGDKEFEVMGVNEIKAK 200
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + P + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 201 FDIESPSQVIDMLGLMGDTADNIPG----CPGVGEKTAQKLIAQFGSIENLL 248
>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
Length = 875
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F I ++L N+
Sbjct: 53 MLVAFDA-GKTTFRHKTYEEYKGGRQKTPPEL--SEQFP---------LIRELLDAFNIK 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ +EADD+I TL + ++ + V S DKD QL+S+ V +V+ + + Y
Sbjct: 101 RFELDNYEADDIIGTLSKEAEKEKWEVKVVSGDKDLLQLVSDYVTVVLTKKGITNVESYD 160
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y PH + ++ ++GD D +PG VPG G KTALKLLK+ G++EN+L++
Sbjct: 161 EALIDEKYGIKPHQIIDMKGLMGDSSDNIPG----VPGVGEKTALKLLKQFGTIENVLDS 216
>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452743761|ref|ZP_21943621.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452088205|gb|EME04568.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
Length = 952
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNRLGEPTGAMYG-VLNMLKSLISQVNPSHIAVVFDAKGKT-FRDELFKQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ I+ LG +P++ IEG EADDVI TL Q + G +
Sbjct: 85 PDDL-------RPQIEPLHR-IIKALG---IPLISIEGVEADDVIGTLAVQAAKDGKDVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDFLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSLE +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSLEQI 214
>gi|421348985|ref|ZP_15799355.1| DNA polymerase I [Vibrio cholerae HE-25]
gi|395956834|gb|EJH67424.1| DNA polymerase I [Vibrio cholerae HE-25]
Length = 934
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|433654694|ref|YP_007298402.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433292883|gb|AGB18705.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 867
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 24/242 (9%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F L D+ D + FD + T R + +YK R+ +L
Sbjct: 33 AIYGFSMMLLKLLDE-EKPDYIAVAFDKKAPT-FRHKEYSAYKGTRQSMPEELI------ 84
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
+ DV+ N+ ++IEG EADD+I T+ + G + ++ + D+D QL
Sbjct: 85 -----EQVDILKDVINAFNIKTIEIEGFEADDIIGTVSKIASENGLKVLIVTGDRDALQL 139
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
+S+DV++ + + + + Y + I +Y P + L+ ++GD D +PG VP
Sbjct: 140 VSDDVKVKICKKGITQMEEYDERAVIERYEVTPRQFIDLKGLMGDKSDNIPG----VPNI 195
Query: 278 GRKTALKLLKKHGSLEN-LLNAAAVR-----TVGRDYAQEALTKHADYLRRNYEV-LALR 330
G KTA+KL+K+ GS+EN L+N ++ + + L+K + RN + + LR
Sbjct: 196 GEKTAIKLIKEFGSIENVLMNTDKLKGKIRENIENNTEMAVLSKKLATIERNVPIEIDLR 255
Query: 331 RY 332
Y
Sbjct: 256 EY 257
>gi|419835047|ref|ZP_14358496.1| DNA polymerase I [Vibrio cholerae HC-46B1]
gi|421341636|ref|ZP_15792046.1| DNA polymerase I [Vibrio cholerae HC-43B1]
gi|423733392|ref|ZP_17706626.1| DNA polymerase I family protein [Vibrio cholerae HC-41B1]
gi|424007690|ref|ZP_17750649.1| DNA polymerase I [Vibrio cholerae HC-44C1]
gi|395947220|gb|EJH57876.1| DNA polymerase I [Vibrio cholerae HC-43B1]
gi|408632497|gb|EKL04948.1| DNA polymerase I family protein [Vibrio cholerae HC-41B1]
gi|408859489|gb|EKL99147.1| DNA polymerase I [Vibrio cholerae HC-46B1]
gi|408868117|gb|EKM07462.1| DNA polymerase I [Vibrio cholerae HC-44C1]
Length = 934
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|387930085|ref|ZP_10132762.1| DNA polymerase I [Bacillus methanolicus PB1]
gi|387586903|gb|EIJ79227.1| DNA polymerase I [Bacillus methanolicus PB1]
Length = 877
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +
Sbjct: 54 ILVAFDA-GKTTFRHETYSEYKGGRQKTPPEL--SEQFP---------FIRELLDAFGIR 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++GY+ V S DKD QL SE + + + + YT
Sbjct: 102 QYELENYEADDIIGTLSKRAEKEGYQVKVISGDKDLTQLCSEKTTVGITRKGITDIEEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
H +Y P + ++ ++GD D +PG VPG G KTA++LL + ++ENLLN+
Sbjct: 162 PDHIKEKYGLTPEQIIDMKGLMGDASDNIPG----VPGVGEKTAVRLLAEFKTVENLLNS 217
>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
Length = 906
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 27 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 74
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 75 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 134
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 135 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 184
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 185 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 225
>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378776058|ref|YP_005184486.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364506863|gb|AEW50387.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 896
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L++ Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQELSSQ-----------FQPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K +YLR + L L +
Sbjct: 212 A----------HANEIGGKIGEYLRASIPHLPLSK 236
>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
Length = 928
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIA---------VFDG 125
K++F LD L Y P + S G S V+ + V+ FD
Sbjct: 5 KKLFLLDAYALIYRAYYAFIKNPRVNSKGLNTSAILGFVNTLEEVLNKENPTHIGIAFDP 64
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + YKA R + + + I D++ +P+++++G+
Sbjct: 65 AGPT-FRHEAFEDYKAQREA-----------TPEDIKIAVPIIKDIIRAYKIPILEVQGY 112
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL Q +K + +PDKD+ QL+ + V + P + + I +
Sbjct: 113 EADDVIGTLAKQANEKEISTYMMTPDKDYAQLVDKYVYMYRPKYGDKEFEILGPQEVIEK 172
Query: 246 YNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y+ + S+ + L ++GD D +PG PG G KTA KLLK+ GS+ENL+
Sbjct: 173 YDLENQSQIIDLLGLMGDSADNIPG----CPGVGIKTAQKLLKEFGSIENLI 220
>gi|429887035|ref|ZP_19368565.1| DNA polymerase I [Vibrio cholerae PS15]
gi|429225982|gb|EKY32161.1| DNA polymerase I [Vibrio cholerae PS15]
Length = 934
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|384100146|ref|ZP_10001211.1| DNA polymerase I [Rhodococcus imtechensis RKJ300]
gi|383842367|gb|EID81636.1| DNA polymerase I [Rhodococcus imtechensis RKJ300]
Length = 887
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R + P YKA+R TA F +G+V + D
Sbjct: 46 EQPSH---VAAAFDVSRQT-FRAEKFPEYKANRS------TAPDEF-KGQV----EITKD 90
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG +PV+ G EADD+IATL Q GYR +V + D+D QL+++ V ++ P +
Sbjct: 91 VLGALGIPVMAEAGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKG 150
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T +Y P + GD D +PGI PG G KTA K +K++G
Sbjct: 151 VSDLTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIKEYG 206
Query: 291 SLENLLN 297
L L++
Sbjct: 207 DLVGLVD 213
>gi|384263187|ref|YP_005418375.1| DNA polymerase A [Rhodospirillum photometricum DSM 122]
gi|378404289|emb|CCG09405.1| DNA polymerase A [Rhodospirillum photometricum DSM 122]
Length = 925
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 106 LSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH 165
L L D S D + VFD G R +L P+YKA R + L +F+
Sbjct: 45 LKLMADSAS--DHLAVVFDA-GRRTFRTELYPAYKAQRPEPPEDLV--PQFA-------- 91
Query: 166 QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV 225
I + + NVP ++ EG EADD+IAT +G R + S DKD QL+ + V ++
Sbjct: 92 -VIREAVRALNVPCLEREGFEADDLIATYARHARAQGARVTIVSSDKDLMQLVRDGVDML 150
Query: 226 MPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
P+++ + ++ P + ++ + GD VD VPG VPG G KTA +L
Sbjct: 151 DPMKN----KTIGPTEVMEKFGVPPTRVVDVQALAGDSVDNVPG----VPGIGLKTAAQL 202
Query: 286 LKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ +G L+ LL A + + ++ L +HAD R + E++ LR
Sbjct: 203 ISTYGDLDTLLARAG--EIPQPRRRQMLQEHADDARLSRELVRLR 245
>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 997
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R L P YKA+R L I N+P V+
Sbjct: 81 IFDYSSKT-FRNDLYPEYKANRSAPPEDLIPQ-----------FGLIRQATRAFNLPCVE 128
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
IEG+EADD+IAT + G + S DKD QL+ + V + P++D +
Sbjct: 129 IEGYEADDLIATYARLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQ----IGIPE 184
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + L+ + GD VD VPG VPG G KTA +LL++ G L+ LL A
Sbjct: 185 VIEKWGVPPEKMVDLQALTGDSVDNVPG----VPGIGPKTAAQLLEQFGDLDTLLARAG- 239
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ +D +E++ +AD R + +++ L
Sbjct: 240 -EIKQDKRRESIIANADKARISRQLVTL 266
>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
Length = 933
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD G T R +L P+YKAHR + +L +F+ I + VP ++
Sbjct: 69 IFDA-GRTTFRNRLYPAYKAHRPEPPPELIP--QFA---------LIREATAAFGVPAIE 116
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ EADD+IA+ + +G R + S DKD QLI V+ +QD +
Sbjct: 117 LADWEADDLIASYARAAVTRGGRVTIVSSDKDLMQLIQPGVE----MQDPIKQKTIGPAE 172
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + ++ ++GD VD VPG VPG G KTA +L+ ++G L+ +L AA+
Sbjct: 173 VMEKFGVTPEKMIDVQALMGDSVDNVPG----VPGIGPKTAAQLINEYGDLDGVL--AAL 226
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
T+ ++ L HA+ R + +++AL
Sbjct: 227 ETMKPSKRRDNLVAHAEDARISRQLVAL 254
>gi|403237757|ref|ZP_10916343.1| DNA polymerase I [Bacillus sp. 10403023]
Length = 876
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L S++F F+ ++L +
Sbjct: 54 ILVAFDA-GKTTFRHSTFSEYKGGRQKTPPEL--SEQFP---------FLRELLDAYKIA 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL Q Q+G+ + S DKD QL S+ V + + + + YT
Sbjct: 102 RYELENYEADDIIGTLSLQAEQEGFEVKIISGDKDLTQLASDLVTVDITKKGITDVDSYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + ++ ++GD+ D +PG VPG G KTALKLL++ SLE LL+
Sbjct: 162 PEFIKEKYGITPERIIDMKGLMGDNSDNIPG----VPGVGEKTALKLLQEFNSLEELLD- 216
Query: 299 AAVRTVGRDYAQEALTKHAD 318
++ VG +E L + D
Sbjct: 217 -SIDKVGGKKLKEKLEANKD 235
>gi|419827810|ref|ZP_14351303.1| DNA polymerase I family protein [Vibrio cholerae HC-1A2]
gi|419831471|ref|ZP_14354941.1| DNA polymerase I family protein [Vibrio cholerae HC-61A2]
gi|422915841|ref|ZP_16950198.1| DNA polymerase I [Vibrio cholerae HC-02A1]
gi|423810749|ref|ZP_17714791.1| DNA polymerase I family protein [Vibrio cholerae HC-55C2]
gi|423845608|ref|ZP_17718564.1| DNA polymerase I family protein [Vibrio cholerae HC-59A1]
gi|423877821|ref|ZP_17722194.1| DNA polymerase I family protein [Vibrio cholerae HC-60A1]
gi|423996013|ref|ZP_17739533.1| DNA polymerase I family protein [Vibrio cholerae HC-02C1]
gi|424014924|ref|ZP_17754815.1| DNA polymerase I family protein [Vibrio cholerae HC-55B2]
gi|424018069|ref|ZP_17757882.1| DNA polymerase I family protein [Vibrio cholerae HC-59B1]
gi|424623448|ref|ZP_18061936.1| DNA polymerase I [Vibrio cholerae HC-50A1]
gi|424628018|ref|ZP_18066341.1| DNA polymerase I [Vibrio cholerae HC-51A1]
gi|424631968|ref|ZP_18070100.1| DNA polymerase I [Vibrio cholerae HC-52A1]
gi|424638880|ref|ZP_18076788.1| DNA polymerase I [Vibrio cholerae HC-56A1]
gi|424647132|ref|ZP_18084823.1| DNA polymerase I [Vibrio cholerae HC-57A1]
gi|443526006|ref|ZP_21092109.1| DNA polymerase I [Vibrio cholerae HC-78A1]
gi|341641861|gb|EGS66378.1| DNA polymerase I [Vibrio cholerae HC-02A1]
gi|408017448|gb|EKG54951.1| DNA polymerase I [Vibrio cholerae HC-50A1]
gi|408023038|gb|EKG60219.1| DNA polymerase I [Vibrio cholerae HC-52A1]
gi|408028241|gb|EKG65146.1| DNA polymerase I [Vibrio cholerae HC-56A1]
gi|408038544|gb|EKG74881.1| DNA polymerase I [Vibrio cholerae HC-57A1]
gi|408059974|gb|EKG94701.1| DNA polymerase I [Vibrio cholerae HC-51A1]
gi|408624561|gb|EKK97505.1| DNA polymerase I family protein [Vibrio cholerae HC-1A2]
gi|408637382|gb|EKL09444.1| DNA polymerase I family protein [Vibrio cholerae HC-55C2]
gi|408645131|gb|EKL16797.1| DNA polymerase I family protein [Vibrio cholerae HC-60A1]
gi|408646316|gb|EKL17930.1| DNA polymerase I family protein [Vibrio cholerae HC-59A1]
gi|408652620|gb|EKL23830.1| DNA polymerase I family protein [Vibrio cholerae HC-61A2]
gi|408855519|gb|EKL95220.1| DNA polymerase I family protein [Vibrio cholerae HC-02C1]
gi|408862861|gb|EKM02362.1| DNA polymerase I family protein [Vibrio cholerae HC-55B2]
gi|408871453|gb|EKM10693.1| DNA polymerase I family protein [Vibrio cholerae HC-59B1]
gi|443455641|gb|ELT19405.1| DNA polymerase I [Vibrio cholerae HC-78A1]
Length = 934
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|421352875|ref|ZP_15803214.1| DNA polymerase I [Vibrio cholerae HE-45]
gi|395956671|gb|EJH67264.1| DNA polymerase I [Vibrio cholerae HE-45]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
Length = 906
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 27 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 74
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 75 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 134
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 135 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 184
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 185 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 225
>gi|419965164|ref|ZP_14481113.1| DNA polymerase I [Rhodococcus opacus M213]
gi|414569560|gb|EKT80304.1| DNA polymerase I [Rhodococcus opacus M213]
Length = 887
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R + P YKA+R TA F +G+V + D
Sbjct: 46 EQPSH---VAAAFDVSRQT-FRAEKFPEYKANRS------TAPDEF-KGQV----EITKD 90
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG +PV+ G EADD+IATL Q GYR +V + D+D QL+++ V ++ P +
Sbjct: 91 VLGALGIPVMAEAGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKG 150
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T +Y P + GD D +PGI PG G KTA K +K++G
Sbjct: 151 VSDLTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIKEYG 206
Query: 291 SLENLLN 297
L L++
Sbjct: 207 DLVGLVD 213
>gi|424843386|ref|ZP_18268011.1| DNA polymerase I [Saprospira grandis DSM 2844]
gi|395321584|gb|EJF54505.1| DNA polymerase I [Saprospira grandis DSM 2844]
Length = 927
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAV-FD 124
+K++F LD L Y P + S G + S ++ + P IAV FD
Sbjct: 2 QKKLFLLDAMALIYRAHFAFIKNPLINSKGLNVSAMNGFTSTLWELLRKEKPTHIAVAFD 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
GGT R ++ YKA+R + + + +I ++ N+PVV +
Sbjct: 62 LPGGT-FRHEMYAPYKANREE-----------QPEDIRLAIPYIKQIVEAFNIPVVAVPN 109
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADDVI TL Q ++G+ + +PDKD+ QL+ + + P +++S +
Sbjct: 110 YEADDVIGTLAKQAAREGFDVYMMTPDKDYAQLVEDHIFWYKPAHFGNKFSVLGKAEVLE 169
Query: 245 QYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ + + + + + GD D +PGI PG G KTA KLL K+GS+ENLL
Sbjct: 170 KWKIERVEQVIDVLGLQGDTADNIPGI----PGVGPKTAQKLLAKYGSIENLL 218
>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|307105571|gb|EFN53820.1| hypothetical protein CHLNCDRAFT_136540 [Chlorella variabilis]
Length = 293
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
+L +L +PV+++ G EADDVI T+ + +++G VASPDKDF QL+ + L+ P
Sbjct: 74 LLQLLKAMAIPVIQVSGVEADDVIGTMAYRAVREGIAVAVASPDKDFFQLLRPGIILLRP 133
Query: 228 LQD------LDRWSF--YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGR 279
+ +++++ Y+ + +Y P + + + GD D VPG V G G
Sbjct: 134 PKKPALGERINKYALVPYSQTDFENEYGLQPEQFVDVLALAGDASDNVPG----VAGIGP 189
Query: 280 KTALKLLKKHGSLENLLNAAA 300
KTA+ LLK+HG+LENL+ AA
Sbjct: 190 KTAVALLKQHGTLENLIEHAA 210
>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
Length = 908
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 22/180 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V FD E TE R+++ P+YKA+R L +F+ I V+ NVP
Sbjct: 62 VALAFDKESRTE-RQKIDPTYKANREGPPEDLVP--QFA---------LIRRVVEAINVP 109
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+++ G EADDVI TL + Q+G+ V + DKDF Q++ +DV+L P++D+ +T
Sbjct: 110 VLEVAGWEADDVIGTLAVKAKQEGFCVQVVTGDKDFVQIVDDDVRLYDPMKDV-----HT 164
Query: 239 LKHYI-AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
L + A+ +P ++GD VD VP VPG G KTA +L+++ G +E LL+
Sbjct: 165 LPADVKARLGIEPGQMRDYLALIGDAVDNVPK----VPGIGPKTATELIQQFGDVETLLS 220
>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 927
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD G T R L P YKAHR L R ++ HQ ++ ++G
Sbjct: 57 ADYAACVFDASGPT-FRDTLYPEYKAHRAPMPDDL-------RAQIEPIHQ-VVRLMG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PVV + G EADDVI TL ++G +V+S DKD QL+ E + ++ + R
Sbjct: 106 -WPVVCVPGVEADDVIGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG VP G KTA K L ++GSL+ L
Sbjct: 163 --DVAGVTAEFGVPPTLMVDYQTLVGDAVDNVPG----VPKVGPKTAAKWLNEYGSLDGL 216
Query: 296 L-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L A ++ V A E L ++L + E++ +R
Sbjct: 217 LARAGEIKGV----AGENLRGALEWLPKGRELVTIR 248
>gi|384423459|ref|YP_005632817.1| DNA polymerase I [Vibrio cholerae LMA3984-4]
gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3984-4]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|402819958|ref|ZP_10869525.1| DNA polymerase I superfamily protein [alpha proteobacterium
IMCC14465]
gi|402510701|gb|EJW20963.1| DNA polymerase I superfamily protein [alpha proteobacterium
IMCC14465]
Length = 951
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 108 LFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH 165
L D + P + +FD G T R + P YKA+R L
Sbjct: 50 LMDDMAAEESPTHLAVIFDASGKT-FRNDIYPEYKANRDAPPEDLVP------------- 95
Query: 166 QFIL--DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
QF L + + +P V+++G+EADD+IA Q G R + S DKD QL+++ V
Sbjct: 96 QFPLVREAVKAFGIPSVELKGYEADDLIAAYTHAATQSGARVSIVSSDKDLMQLVTDRVN 155
Query: 224 LVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTAL 283
++ ++D L+ ++ P + ++ + GD VD VPG VPG G KTA
Sbjct: 156 MIDTMKDKKIGPAEVLE----KFEVGPERVIDVQSLAGDSVDNVPG----VPGIGIKTAA 207
Query: 284 KLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ ++G LE LL A + ++ +E L + AD R + E++ LR
Sbjct: 208 LLINEYGDLETLL--ARAEEIKQNKRRENLIEFADQARISRELVTLR 252
>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
Length = 897
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 19/218 (8%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKA 141
F + PL + + + +G ++++ + DP + FD + T R + YKA
Sbjct: 19 FYALPPLTNKEGQHTNAIYG-FMTMLLKVMDDYDPQYISVAFDRKAPT-FRHKSFEGYKA 76
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
R+K +L + + +VL ++ V+I+G EADD+I TL ++
Sbjct: 77 GRKKMPPEL-----------AEQLEPLKEVLDAFHIYRVEIDGFEADDLIGTLSKYAEEQ 125
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
++ + DKD QL SE V+++ + + Y + + QY P + L+ ++G
Sbjct: 126 DIECLIVTGDKDALQLASEKVKILFTKKGISSLEIYDPQKIMEQYEVTPEQFIDLKGLMG 185
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
D+ D +PGI PG G KTA+KLLK+ G++ENL+ A
Sbjct: 186 DNSDNIPGI----PGVGEKTAIKLLKQFGTVENLIQNA 219
>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
Length = 896
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L S +F Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQEL--SSQF---------QPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K +YLR + L L +
Sbjct: 212 A----------HANEIGGKIGEYLRASIPHLPLSK 236
>gi|422908651|ref|ZP_16943330.1| DNA polymerase I [Vibrio cholerae HE-09]
gi|341639314|gb|EGS63934.1| DNA polymerase I [Vibrio cholerae HE-09]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|340626634|ref|YP_004745086.1| putative DNA polymerase I POLA [Mycobacterium canettii CIPT
140010059]
gi|340004824|emb|CCC43969.1| putative DNA polymerase I POLA [Mycobacterium canettii CIPT
140010059]
Length = 904
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL + +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATEAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
Length = 930
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 51 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 98
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 99 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 158
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 159 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 208
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 209 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 249
>gi|424635054|ref|ZP_18073088.1| DNA polymerase I [Vibrio cholerae HC-55A1]
gi|408028625|gb|EKG65500.1| DNA polymerase I [Vibrio cholerae HC-55A1]
Length = 906
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 27 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 74
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 75 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 134
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 135 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 184
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 185 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 225
>gi|422921361|ref|ZP_16954600.1| DNA polymerase I [Vibrio cholerae BJG-01]
gi|341649167|gb|EGS73162.1| DNA polymerase I [Vibrio cholerae BJG-01]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|417822273|ref|ZP_12468874.1| DNA polymerase I [Vibrio cholerae HE48]
gi|422305523|ref|ZP_16392724.1| DNA polymerase I family protein [Vibrio cholerae CP1035(8)]
gi|340049709|gb|EGR10622.1| DNA polymerase I [Vibrio cholerae HE48]
gi|408628621|gb|EKL01352.1| DNA polymerase I family protein [Vibrio cholerae CP1035(8)]
Length = 934
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|383817897|ref|ZP_09973198.1| DNA polymerase I [Mycobacterium phlei RIVM601174]
gi|383339728|gb|EID18056.1| DNA polymerase I [Mycobacterium phlei RIVM601174]
Length = 914
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 123/276 (44%), Gaps = 42/276 (15%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEG----------SRPSLQS---FGRWLSLFFDQVSHAD 117
N T K + LD N L Y +R L + +G + ++ + +
Sbjct: 15 NKTAPTDEKPTLMLLDGNSLAYRAFFALPAENFKTRNGLTTNAVYG-FTAMLINLLRDEQ 73
Query: 118 P--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
P + A FD T R + P YKA R +A+ RG++ + + VLG
Sbjct: 74 PTHIAAAFDVSRQT-FRAEKYPEYKAGR-------SATPDEFRGQIDITKE----VLGAL 121
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
+ V+ G EADD+IATL Q Q GYR +V + D+D QL+S++V ++ P + + +
Sbjct: 122 GITVLAEPGFEADDIIATLATQAEQAGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSDLT 181
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+T + + +Y P + GD D +PGI PG G KTA K + ++GSL+ L
Sbjct: 182 RFTPEAVLEKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIVEYGSLQAL 237
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ D + K D LR N + L R
Sbjct: 238 V----------DNVDKIKGKVGDALRANLSSVVLNR 263
>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
Length = 869
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD +G T R LL YK R++ +L R + L +P
Sbjct: 56 IMVAFDAKGKT-FRSDLLEEYKGTRKETPEELKCQFEIVR-----------EFLDAHQIP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++EG+E DD+I TL Q ++GY+ + + DKD QL+ E + + T
Sbjct: 104 YCELEGYEGDDIIGTLATQGSKQGYQVNIMTGDKDMMQLVDEHIHVYKRNTKTKTDDVIT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
K + +Y P L ++GD D +PGI PG G KTALKLL ++ ++ENL
Sbjct: 164 PKTFYEKYELQPDQMRDLLGLMGDSADNIPGI----PGVGEKTALKLLHEYQTIENL--- 216
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEV 326
+D+ E K + +R N E+
Sbjct: 217 -------KDHCSEIKGKMGEKIRENIEL 237
>gi|397665731|ref|YP_006507268.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
gi|395129142|emb|CCD07367.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
Length = 896
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L S +F Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQEL--SSQF---------QPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K +YLR + L L +
Sbjct: 212 A----------HANEIGGKIGEYLRASIPHLPLSK 236
>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
Length = 922
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R + YKA R L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDMYSEYKAQRPPMPDDL-------RSQIEPLHR-IIHA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARQASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPDEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLLNAAA-VRTVGRDYAQEA---LTKHADYLRRNYEVLALR 330
+ NLL A V +G A+ +T++AD LR +YE+ ++
Sbjct: 211 VANLLAAPEKVSDLGFRGAKTMAAKITENADMLRLSYELATIK 253
>gi|354594732|ref|ZP_09012769.1| DNA polymerase I [Commensalibacter intestini A911]
gi|353671571|gb|EHD13273.1| DNA polymerase I [Commensalibacter intestini A911]
Length = 927
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 30/213 (14%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
+FD G R + P+YKA R + + Q + SR +LG +
Sbjct: 61 IFDA-GRKTFRNDIYPAYKAQRPPPPEELIPQFALVKEASR------------LLG---L 104
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P +++ G EADD+IA+ +++ G + + S DKD QL+++ V + P+++
Sbjct: 105 PTIEMAGWEADDLIASYAKAMVKAGGQCTIISSDKDLMQLVNDHVCMQDPIKE----KII 160
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
IA++ +P +SL+ ++GD VD VPG VPG G KTA L+ ++G LE +L
Sbjct: 161 REPEVIAKFGVEPSKMISLQALMGDSVDNVPG----VPGIGPKTAAALINEYGDLEKVLT 216
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
A+ T+ ++ L +H + R +Y+++ L+
Sbjct: 217 --AIPTMKASKRRDNLDEHQENARISYQLVQLK 247
>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
Length = 906
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 27 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 74
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 75 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 134
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 135 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 184
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 185 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 225
>gi|222111840|ref|YP_002554104.1| DNA polymerase I [Acidovorax ebreus TPSY]
gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
Length = 922
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD G T R L P YK HR L R ++ H+ ++ +LG
Sbjct: 57 ADYAACVFDASGPT-FRDALYPEYKQHRAPMPDDL-------RAQIEPIHE-VVRLLG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PV+ I G EADDVI TL +G + V++S DKD QL++E + ++ + R
Sbjct: 106 -WPVLCIPGVEADDVIGTLAATAAGQGMQVVISSGDKDLSQLVNEHITIIDTMNGKKR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG VP G KTA K L ++GSL+ L
Sbjct: 163 --DVAGVTAEFGVPPTLMVDYQALVGDAVDNVPG----VPKVGPKTAAKWLTEYGSLDAL 216
Query: 296 L-NAAAVRTVGRDYAQEAL 313
L NA A++ V + + AL
Sbjct: 217 LANAGAIKGVAGENLRGAL 235
>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
Length = 896
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L++ Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQELSSQ-----------FQPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K +YLR + L L +
Sbjct: 212 A----------HANEIGGKIGEYLRASIPHLPLSK 236
>gi|386360445|ref|YP_006058690.1| DNA polymerase I [Thermus thermophilus JL-18]
gi|383509472|gb|AFH38904.1| DNA polymerase I [Thermus thermophilus JL-18]
Length = 831
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 60 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 106
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ +++G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 107 TRL---EVQGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 160
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 161 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 214
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 215 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 248
>gi|444335597|ref|YP_007391966.1| DNA polymerase I [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
gi|444299976|gb|AGD98213.1| DNA polymerase I [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
Length = 300
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 42/243 (17%)
Query: 78 SKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVI----------------- 120
+ K++F +D + Y+G +++ LF Q + P+I
Sbjct: 2 NNKKLFLIDTYTILYQGYYAYIKN-----PLFTSQGINTSPIIHFTYFLINTLNEEKPSY 56
Query: 121 --AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
A FD T R++ P YKAHR+K R ++ + +++++L +
Sbjct: 57 MAAFFDTSRKT-FRKKEYPKYKAHRKKTPRDISIAM-----------PYVVNILNSFRIS 104
Query: 179 -VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
+G+EADD+I T+ + +KGY + + DKDF QL+++++Q+ P +
Sbjct: 105 SFYAKDGYEADDLIGTIAKKAEKKGYMIYIITFDKDFSQLVTKNIQIYRPPFKGNPKKIL 164
Query: 238 TLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ ++ +P + L ++GD D +PG+ PG G K A K ++K+GSLE L
Sbjct: 165 GIEEIKKKFGVIEPKQVIDLWSMMGDSSDNIPGL----PGIGEKYARKFIQKYGSLEKFL 220
Query: 297 NAA 299
N+
Sbjct: 221 NST 223
>gi|397662653|ref|YP_006504191.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
gi|395126064|emb|CCD04242.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
Length = 896
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L S +F Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQEL--SSQF---------QPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K +YLR + L L +
Sbjct: 212 A----------HANEIGGKIGEYLRASIPHLPLSK 236
>gi|417818709|ref|ZP_12465330.1| DNA polymerase I [Vibrio cholerae HE39]
gi|423943388|ref|ZP_17733049.1| DNA polymerase I family protein [Vibrio cholerae HE-40]
gi|423973242|ref|ZP_17736594.1| DNA polymerase I family protein [Vibrio cholerae HE-46]
gi|340044058|gb|EGR05013.1| DNA polymerase I [Vibrio cholerae HE39]
gi|408662575|gb|EKL33507.1| DNA polymerase I family protein [Vibrio cholerae HE-40]
gi|408666546|gb|EKL37330.1| DNA polymerase I family protein [Vibrio cholerae HE-46]
Length = 934
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|433641767|ref|YP_007287526.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070008]
gi|432158315|emb|CCK55606.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070008]
Length = 904
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL + +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATEAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>gi|383786118|ref|YP_005470687.1| DNA polymerase I [Fervidobacterium pennivorans DSM 9078]
gi|383108965|gb|AFG34568.1| DNA polymerase I [Fervidobacterium pennivorans DSM 9078]
Length = 897
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 28/189 (14%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVL 172
D + V D +GG+ +RR+L YKAHR LRQ+ G
Sbjct: 55 DYCVFVVDVKGGSTYRRELYEKYKAHRPETPEPLLRQINLVGELIEG------------- 101
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQV-LQKGYRAV----VASPDKDFKQLISEDVQLVMP 227
+ +V++ G+EADDVIATL + +KG + V + DKD QL++E++ +
Sbjct: 102 --FGIKLVRMPGYEADDVIATLAKRFEKEKGLLEISEINVVTSDKDLLQLVNENISVWRI 159
Query: 228 LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLK 287
+ + YT++ +Y PH + +VGD D +PG VPG G KTA+K+L+
Sbjct: 160 EKGVTDIRKYTVRDVYERYGVYPHQIVDYLALVGDASDNIPG----VPGIGEKTAVKILQ 215
Query: 288 KHGSLENLL 296
GS+EN L
Sbjct: 216 DFGSVENAL 224
>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
Length = 896
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 30/215 (13%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
+ + VFD +G T R + P YKAHR ++L S +F Q ++ +L
Sbjct: 52 EEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQEL--SSQF---------QPLIQLLQAMG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ + +S
Sbjct: 100 LPLLIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLI---NTMSNYSM 156
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ A++ P + ++GD VD +PG++ G KTA+K L ++ +L+NLL
Sbjct: 157 -DIDGVKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKC----GPKTAVKWLTEYQTLDNLL 211
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K +YLR + L L +
Sbjct: 212 A----------HANEIGGKIGEYLRASIPHLPLSK 236
>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
gi|153826297|ref|ZP_01978964.1| DNA polymerase I, partial [Vibrio cholerae MZO-2]
gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
Length = 886
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 7 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 54
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 55 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 114
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 115 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 164
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 165 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 205
>gi|433630723|ref|YP_007264351.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070010]
gi|432162316|emb|CCK59692.1| Putative DNA polymerase I PolA [Mycobacterium canettii CIPT
140070010]
Length = 904
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL + +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATEAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR 302
AVR
Sbjct: 232 VDAVR 236
>gi|374612569|ref|ZP_09685346.1| DNA polymerase I [Mycobacterium tusciae JS617]
gi|373547480|gb|EHP74205.1| DNA polymerase I [Mycobacterium tusciae JS617]
Length = 915
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 32/239 (13%)
Query: 74 EKTKSKKRVFFLDVNPLCY-------------EGSRPSLQSFGRWLSLFFDQVSHADP-- 118
EK K + LD N L + +G + +G + ++ + + P
Sbjct: 8 EKATEKPTLMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYG-FTAMLINLLRDEQPTH 66
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R++ P YK R +A+ RG++ + + VLG +
Sbjct: 67 IAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQIDITKE----VLGALGIT 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q ++G+R +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 115 VLAEAGFEADDIIATLATQAEKEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL+ L++
Sbjct: 175 PEAVLEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYGSLQTLVD 229
>gi|357024017|ref|ZP_09086183.1| DNA polymerase I [Mesorhizobium amorphae CCNWGS0123]
gi|355544108|gb|EHH13218.1| DNA polymerase I [Mesorhizobium amorphae CCNWGS0123]
Length = 985
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R +L P YKA+R L I N+P ++
Sbjct: 67 IFDYSSKT-FRNELYPEYKANRSAPPEDLIPQ-----------FGLIRQATKAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+EG EADD+IAT + G + S DKD QL+ + V + P++D +
Sbjct: 115 MEGFEADDLIATYCKLACEAGGDTTIISSDKDLMQLVGDTVGMYDPMKDRQ----IGIPE 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + L+ + GD VD VPG VPG G KTA +LL++ G+L+ LL A
Sbjct: 171 VIEKWGVPPEKMIDLQALTGDSVDNVPG----VPGIGPKTAAQLLEQFGNLDGLLERAG- 225
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ +D +E++ +AD R + +++ L+
Sbjct: 226 -EIKQDKRRESIIANADKARISRQLVTLK 253
>gi|345017321|ref|YP_004819674.1| 5'-3' exonuclease [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032664|gb|AEM78390.1| LOW QUALITY PROTEIN: 5'-3' exonuclease, resolvase-like
domain-containing protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 872
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +LT + +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEELT-----------EQVDLLKEIIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PGI P G KTA+KLLK+ GS+ENLL
Sbjct: 159 FDEKAVLERYEITPQQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKEFGSVENLL 214
>gi|224476563|ref|YP_002634169.1| putative 5'-3' exonuclease [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421170|emb|CAL27984.1| putative 5'-3' exonuclease [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 295
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 20/221 (9%)
Query: 110 FDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFI 168
F + +P IAV G R ++ +YK HR +L + +
Sbjct: 47 FSAIEDINPTHIAVCWDMGQQTFRNEVFTAYKQHRPAPPDELKPQFDLVKQ--------M 98
Query: 169 LDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228
+ LG N+ V + +EADDVI TL L K + + + DKD Q I+ +VQ+ +
Sbjct: 99 SEALGFINIGV---QNYEADDVIGTLSNN-LSKENKIYIVTGDKDILQCINPNVQVWLTK 154
Query: 229 QDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
+ + ++ Y L+ Y A+YN +P + ++ +GD DG PG++ G G KTALKL+++
Sbjct: 155 KGFNIYNRYDLERYQAEYNLNPLQLIDIKAFMGDSADGYPGVK----GIGEKTALKLIQQ 210
Query: 289 HGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ S+EN++N T G+ Q+ + H D L+ + ++ A+
Sbjct: 211 YQSVENVINHIDELTPGQ---QKKIISHMDDLKLSKQLAAI 248
>gi|431796409|ref|YP_007223313.1| DNA polymerase I [Echinicola vietnamensis DSM 17526]
gi|430787174|gb|AGA77303.1| DNA polymerase I [Echinicola vietnamensis DSM 17526]
Length = 937
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 31/236 (13%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIA 121
+ +KK++F LD L Y P + S G + + + + P +
Sbjct: 3 SSNKKKLFLLDAMALIYRAHFAFSKNPRINSKGLNTGIMLGFTNTLLEVIEKQSPSHIAV 62
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
FD T R + +YKA+R++ +T VG ++ ++ N+P+++
Sbjct: 63 AFDTAAPT-FRHEQFEAYKANRQEQPEDIT---------VGIP--WVKQIVDGFNIPILE 110
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++G+EADD+I T+ + K + + +PDKD+ QL+ E + L P + K
Sbjct: 111 LDGYEADDIIGTIAKKAEYKDFEVYMMTPDKDYGQLVEEHIFLYKPAFMGNAVDVMGPKE 170
Query: 242 YIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A++ DP + ++GD VD +PGI PG G KTA KLLK +G++E LL
Sbjct: 171 VCAKWEIEDPDQVRDILGLMGDAVDNIPGI----PGIGEKTAKKLLKAYGTIEGLL 222
>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
Length = 872
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +LT + +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEELT-----------EQVDLLKEIIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PGI P G KTA+KLLK+ GS+ENLL
Sbjct: 159 FDEKAVLERYEITPQQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKEFGSVENLL 214
>gi|365824973|ref|ZP_09366933.1| hypothetical protein HMPREF0045_00569 [Actinomyces graevenitzii
C83]
gi|365259161|gb|EHM89156.1| hypothetical protein HMPREF0045_00569 [Actinomyces graevenitzii
C83]
Length = 891
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+LS+F + P V FD GGT R+ P YK R K G+V
Sbjct: 41 FLSMFLGLLEAEQPSHVAVAFDLPGGTFRTREY-PEYKGTRDKTPEAFI-------GQV- 91
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
+ I +LG NV + EADD++ATL Q L++GY +++S D+D Q++++
Sbjct: 92 ---ELIRQLLGTLNVTCLSKPDFEADDILATLTSQGLEQGYEVLISSGDRDSFQMVTDHS 148
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P++ + T + A+Y P L +VG+D D +PG VPG G KTA
Sbjct: 149 TVLYPVRGVSVSRRMTPQEVFARYGVTPAQYPQLAALVGEDSDNLPG----VPGVGPKTA 204
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
K L ++ SLE + A V + Q +L H D ++RN
Sbjct: 205 AKWLNRYESLEGIY--AHVDEIKGKVGQ-SLRDHLDDVKRN 242
>gi|392940657|ref|ZP_10306301.1| LOW QUALITY PROTEIN: DNA polymerase I [Thermoanaerobacter
siderophilus SR4]
gi|392292407|gb|EIW00851.1| LOW QUALITY PROTEIN: DNA polymerase I [Thermoanaerobacter
siderophilus SR4]
Length = 872
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +LT + +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEELT-----------EQVDLLKEIIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PGI P G KTA+KLLK+ GS+ENLL
Sbjct: 159 FDEKAVLERYEITPQQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKEFGSVENLL 214
>gi|389819856|ref|ZP_10209524.1| DNA polymerase I [Planococcus antarcticus DSM 14505]
gi|388463116|gb|EIM05488.1| DNA polymerase I [Planococcus antarcticus DSM 14505]
Length = 872
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 80 KRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFDGE 126
K++ LD N L Y + P L + F L D+ ++A FD
Sbjct: 3 KKILLLDGNSLAYRAFFALPLLTNENGIHTNAVYGFTMMLQKILDEEKPTHMIVA-FDA- 60
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YK R+K +L S++F ++ +L + +++ +E
Sbjct: 61 GKTTFRHETFSEYKGGRQKTPPEL--SEQFP---------YLRKLLDAYRIKRYELDNYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I TL + ++G VV S DKD QL S + + + + YT++H +Y
Sbjct: 110 ADDIIGTLSLEAEREGDEVVVISGDKDLTQLASPSTTVYITRKGITDIEKYTVEHIKEKY 169
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
P+ + ++ ++GD D +PG VPG G KTALKLL HGS+E + A
Sbjct: 170 GLTPNQIIDMKGLMGDASDNIPG----VPGVGEKTALKLLAAHGSVEGVYEA 217
>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
Length = 875
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEIKPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + D+L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKDLLAALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y I
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|407938083|ref|YP_006853724.1| DNA polymerase I [Acidovorax sp. KKS102]
gi|407895877|gb|AFU45086.1| DNA polymerase I [Acidovorax sp. KKS102]
Length = 932
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD G T R L YKA R L R ++ H+ ++D+LG
Sbjct: 57 ADYAVCVFDASGPT-FRDALYTEYKATRSPMPDDL-------RSQIEPIHE-VVDLLG-- 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
VV + G EADDVIAT+ +G +V+S DKD QL++E + ++ + R
Sbjct: 106 -WKVVAVPGVEADDVIATMAHMAAAQGIEVIVSSGDKDLSQLVNEHITIIDTMSGKRR-- 162
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG+ V P KTA K L+++GSL+NL
Sbjct: 163 --DVAGVTAEFGVPPALMVDYQALVGDTVDNVPGVTKVGP----KTAAKWLEEYGSLDNL 216
Query: 296 L-NAAAVRTVGRDYAQEALT 314
+ NA A++ V + +EA+
Sbjct: 217 IANADAIKGVAGNNLREAIA 236
>gi|384431242|ref|YP_005640602.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
gi|333966710|gb|AEG33475.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
Length = 831
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 60 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 106
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ +++G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 107 TRL---EVQGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 160
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 161 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 214
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 215 LLK--NLDRVKPENVREKIKAHLEDLRLSMELSRVR 248
>gi|423281298|ref|ZP_17260209.1| DNA polymerase I [Bacteroides fragilis HMW 610]
gi|404583206|gb|EKA87888.1| DNA polymerase I [Bacteroides fragilis HMW 610]
Length = 964
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 16/252 (6%)
Query: 54 FDRTVGRQLLGKADFCGNGLEKTKS---KKRVFFLDVNPLCYEG-----SRPSLQSFGRW 105
F+ + + FC ++K K+ ++F LD L Y P + S G
Sbjct: 5 FEHKSNNKTVNTVFFCTFTMKKLKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFN 64
Query: 106 LSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH 165
S V+ + V+ E T PS R + Q A + + + S
Sbjct: 65 TSAILGFVNTLEEVLK---KENPTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSV 121
Query: 166 QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV 225
I D++ +P++++ G+EADDVI TL + ++G + +PDKD+ QL+++ V +
Sbjct: 122 PIIKDIIRAYRIPILEVSGYEADDVIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMY 181
Query: 226 MPLQDLDRWSFYTLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALK 284
P + ++ A+++ P + + ++GD D +PG PG G KTA K
Sbjct: 182 RPKYGDKEFEVMGIEQVKAKFDIQSPAQVIDMLGLMGDSSDNIPG----CPGVGEKTAQK 237
Query: 285 LLKKHGSLENLL 296
L+ + GS+ENLL
Sbjct: 238 LIAEFGSIENLL 249
>gi|456064031|ref|YP_007503001.1| DNA polymerase I [beta proteobacterium CB]
gi|455441328|gb|AGG34266.1| DNA polymerase I [beta proteobacterium CB]
Length = 947
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 94/192 (48%), Gaps = 25/192 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD +G T R ++ YKAHR L + + I ++
Sbjct: 57 ADHIACVFDAKGKT-FRDEMYSEYKAHRSPMPEDLV-----------KQIEPIHAMVKAL 104
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDR 233
PV+ + G EADDVI TL Q Q G+ ++++ DKD QL++ V L+ M + LD
Sbjct: 105 GWPVLMVSGVEADDVIGTLACQATQAGWETIISTGDKDLAQLVNSSVTLINTMTNEKLD- 163
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ IA++ P + I+GD VD VPG VP G KTA K L + G L+
Sbjct: 164 -----IDGVIAKFGVPPERIVDYLSIIGDAVDNVPG----VPKAGPKTANKWLAEFGDLD 214
Query: 294 NLL-NAAAVRTV 304
NL+ NA V+ V
Sbjct: 215 NLMANADQVKGV 226
>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
Length = 876
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 40/257 (15%)
Query: 79 KKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLS--LFFDQVSHADPVIAVF 123
KK++ +D N + Y + P L + F L+ L +Q +H ++ F
Sbjct: 2 KKKLVLIDGNSVAYRAFFALPLLHNDKGIHTNAVYGFTMMLNKILAEEQPTH---LLVAF 58
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVK 181
D G T R + YK R++ +L S QF L ++L +P +
Sbjct: 59 DA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLKAYRIPAYE 104
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +EADD+I TL + Q+G+ + S D+D QL S V + + + + YT +
Sbjct: 105 LDHYEADDIIGTLAARAEQEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPET 164
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L A++
Sbjct: 165 VREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL--ASI 218
Query: 302 RTVGRDYAQEALTKHAD 318
V + +E L +H D
Sbjct: 219 DEVKGEKLKENLRQHRD 235
>gi|423395136|ref|ZP_17372337.1| DNA polymerase I [Bacillus cereus BAG2X1-1]
gi|423405996|ref|ZP_17383145.1| DNA polymerase I [Bacillus cereus BAG2X1-3]
gi|401655907|gb|EJS73435.1| DNA polymerase I [Bacillus cereus BAG2X1-1]
gi|401660665|gb|EJS78143.1| DNA polymerase I [Bacillus cereus BAG2X1-3]
Length = 877
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSEYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 TEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|379735726|ref|YP_005329232.1| DNA polymerase I [Blastococcus saxobsidens DD2]
gi|378783533|emb|CCG03201.1| DNA polymerase I [Blastococcus saxobsidens DD2]
Length = 915
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPS 138
R FF L V +P+ +G + S+ + + P +AV G R ++
Sbjct: 36 RAFFALPVENFSTTTGQPTNAVYG-FTSMLINILRDERPSHLAVAFDVGRKTFRSEIFAE 94
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YKA+R + S RG+V + +VLG VPV+ EG+EADDVIATL Q
Sbjct: 95 YKANRAE-------SPTDFRGQV----SLVQEVLGALRVPVITAEGYEADDVIATLTVQA 143
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
++G ++A+ D+D QL++E V ++ P + + + +T + +Y P
Sbjct: 144 AEQGMDVLIATGDRDALQLVNEHVTVLYPRKGVSDMTRFTPQEVETKYGLSPAQYPDFAA 203
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
+ GD D +P I P G KTA K ++++GSL+ L++ V TV + E L +H
Sbjct: 204 LRGDPSDNLPSI----PSVGEKTAAKWVREYGSLDALVD--QVDTV-KGKVGEKLREHLS 256
Query: 319 YLRRNYEVLALRR 331
+ +N + L R
Sbjct: 257 SVLQNRRLTELDR 269
>gi|163782128|ref|ZP_02177127.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
gi|159882660|gb|EDP76165.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
Length = 291
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
F + PL + P+ +G +L + + ++ VFD T+ R L YKA
Sbjct: 19 FFALPPLTTKDGFPTGAIYGFLRALLSIMKSERPEYLVVVFDHPAPTK-RDSLFKEYKAG 77
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R L I ++L +P +++EG+EADD+IA L + +KG
Sbjct: 78 RPSMPDPLRLQ-----------IPVIKELLWLMGIPTLEVEGYEADDLIAILAKRFSEKG 126
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
++ + +PDKD QL+SE+V ++ P+ W + ++ P +VGD
Sbjct: 127 FKVKIYTPDKDMLQLVSENVVVINPMN----WEVFNPDKVKDKFGVPPQKVADYLALVGD 182
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+D VPG++ G G KTA+KL++K G + N+L
Sbjct: 183 KIDNVPGVR----GVGPKTAVKLIEKFGGVPNILE 213
>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
Length = 928
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 26/219 (11%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DV 171
S +D V +FD T R + P YKAHR +L QF L +
Sbjct: 52 SSSDHVAVIFDSSRKT-FRSAIYPEYKAHRPPAPEELVP-------------QFPLVREA 97
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
++P +++EG EADD+IAT ++ G R + S DKD QL+ V+++ P+++
Sbjct: 98 TRAFDLPAIELEGFEADDLIATYARLAVEAGARVTIVSSDKDLMQLVGPGVEMIDPMKNR 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ ++ P + ++ + GD D VPG VPG G KTA +L++++G
Sbjct: 158 TIGEAEVRE----KFGVSPDKVVDVQALCGDSSDNVPG----VPGIGVKTAAQLIEEYGD 209
Query: 292 LENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ LL A+ + + +E+L +AD R + E++ LR
Sbjct: 210 LDTLLARAS--EIKQPKRRESLIANADLARISRELVRLR 246
>gi|372267076|ref|ZP_09503124.1| DNA polymerase I [Alteromonas sp. S89]
Length = 913
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 21/182 (11%)
Query: 115 HAD-PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLG 173
H D PV+ VFD +G T R +L YK+HR L A Q I D++
Sbjct: 55 HPDSPVVVVFDAKGKT-FRDELFEEYKSHRPPMPDDLRAQ-----------IQPIHDIID 102
Query: 174 KCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDR 233
+P + I+G EADDVI TL Q ++G ++++ DKD QL+ V LV + +
Sbjct: 103 AMGLPRLVIDGVEADDVIGTLALQGAEQGMDVIISTGDKDMAQLVRPGVTLVNTMSN--- 159
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ ++ A++ P + ++GD VD +PG VPG G KTAL LL+ GSL+
Sbjct: 160 -TVMDVEGVKAKFGVGPELIIDFLALMGDKVDNIPG----VPGVGEKTALALLQGLGSLK 214
Query: 294 NL 295
++
Sbjct: 215 DI 216
>gi|262341095|ref|YP_003283950.1| DNA polymerase I [Blattabacterium sp. (Blattella germanica) str.
Bge]
gi|262272432|gb|ACY40340.1| DNA polymerase I [Blattabacterium sp. (Blattella germanica) str.
Bge]
Length = 297
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 29/237 (12%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFG-------RWLSLFFDQVSHADP--VIAVF 123
+ K++F +D PL Y+ ++P L S G + ++ P + +F
Sbjct: 3 NNKKLFLIDAYPLIYQSYYAYINKPLLTSKGLNTSPIINFTYFLIKTLNDEKPSYMATIF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D R++ YKAHR+K + + + R ++ ++ Q + L N
Sbjct: 63 DDNQEISFRKKEYYKYKAHRKKIPEAICIAIPYIR-KILKTFQ--ISCLHAKN------- 112
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADD+I T+ + KGY + + DKDF QL++E++++ +P + + ++
Sbjct: 113 GYEADDIIGTIAKKAENKGYIIYIITLDKDFFQLVTENIKVYIPPFKGNPKKIFGIEEIK 172
Query: 244 AQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ + P + L ++GD D +PG+ PG G K A K ++K+GS+E LLN+
Sbjct: 173 EKFGVNHPKQVIDLWSMMGDPSDNIPGL----PGIGEKNAKKFIQKYGSIEKLLNST 225
>gi|347752916|ref|YP_004860481.1| DNA polymerase I [Bacillus coagulans 36D1]
gi|347585434|gb|AEP01701.1| DNA polymerase I [Bacillus coagulans 36D1]
Length = 875
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F I ++L +
Sbjct: 53 ILVAFDA-GKTTFRHETYSEYKGTRQKTPPEL--SEQFP---------LIRELLDAHGIE 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + ++G+ V S DKD QL+S +++ + + YT
Sbjct: 101 RYELENYEADDIIGTLSKKAEEEGFIVKVISGDKDMTQLVSPKTTVMITRKGITDMEAYT 160
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
H +Y PH + ++ ++GD D +PG VPG G KTA+KLLK+ ++E LL+
Sbjct: 161 PAHVEEKYGLTPHQIIDMKGLMGDSSDNIPG----VPGIGEKTAIKLLKQFPTVEELLD 215
>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
Length = 878
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 40/257 (15%)
Query: 79 KKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLS--LFFDQVSHADPVIAVF 123
KK++ +D N + Y + P L + F L+ L +Q +H ++ F
Sbjct: 4 KKKLVLIDGNSVAYRAFFALPLLHNDKGIHTNAVYGFTMMLNKILAEEQPTH---LLVAF 60
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVK 181
D G T R + YK R++ +L S QF L ++L +P +
Sbjct: 61 DA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLKAYRIPAYE 106
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +EADD+I TL + Q+G+ + S D+D QL S V + + + + YT +
Sbjct: 107 LDHYEADDIIGTLAARAEQEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPET 166
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L A++
Sbjct: 167 VREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL--ASI 220
Query: 302 RTVGRDYAQEALTKHAD 318
V + +E L +H D
Sbjct: 221 DEVKGEKLKENLRQHRD 237
>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
Length = 920
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 29/234 (12%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPVIAVFDGEG 127
+++F LD L Y P + S G S + ++ +P +
Sbjct: 2 EKLFLLDAYALIYRSYYALLRAPRINSKGLNTSAIMGFCNTLNEVLTKENPTYIGVAFDH 61
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
G R P+YKA R + + AS I D+L +P+++ +G EA
Sbjct: 62 GKTFRHDAFPAYKAQREETPEDIKASV-----------PIIKDILRAYKIPILQADGFEA 110
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DD+I T+ Q +KG + +PDKD+ QLI ++V++ P Q + K +Y
Sbjct: 111 DDIIGTIAIQAGEKGIDTYMLTPDKDYGQLIRKNVKMYRP-QHGGGYEILGEKEIAQKYG 169
Query: 248 CDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
++ + L ++GD D PG PG G KTA KL+ + GS+ENLLN +
Sbjct: 170 ISSSTQIIDLLALMGDSADNFPG----CPGVGEKTAAKLINQFGSVENLLNNTS 219
>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
Length = 939
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 30/213 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G R +L YKAHR +L R ++ H+ I+ LG +P
Sbjct: 63 IAVVFDAKGKN-FRHELYEDYKAHRPPMPDEL-------RIQIEPIHE-IIKALG---IP 110
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ I+G EADDV+ TL Q Q A++++ DKD QL++E + LV + D + T
Sbjct: 111 LLVIDGVEADDVMGTLAHQATQAKMDALLSTGDKDMAQLVNEHITLVNTMND----TLMT 166
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+++ P + ++GD D +PGI P G KTA K + ++GS++NL+
Sbjct: 167 PDSVFEKFHVKPEQIIDYLALMGDSSDNIPGI----PKCGPKTAAKWISEYGSIDNLI-- 220
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
++A+E K + LR N E L L +
Sbjct: 221 --------EHAEEIKGKIGENLRANLEQLKLSQ 245
>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 952
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNRLGEPTGAMYG-VLNMLKSLISQVNPSHIAVVFDTKGKT-FRDELFKQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ I+ LG +P++ IEG EADDVI TL Q + G +
Sbjct: 85 PDDL-------RPQIEPLHR-IIKALG---IPLISIEGVEADDVIGTLAVQAAKDGKDVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDFLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSLE +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSLEQI 214
>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
Length = 917
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 22/211 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V FD +GGT R ++ YKAHR L A I DV +
Sbjct: 54 VAVAFDPKGGT-FRNRMYADYKAHRPPMPEDLAAQW-----------PSIFDVTDAFRLN 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ +E +EADDVIATL Q +G+ + S DKD QL+ E + ++ ++ D Y
Sbjct: 102 RICVEDYEADDVIATLARQAEARGWDVSIVSTDKDLMQLVGERIWMLDTMKRKD----YG 157
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ P L + GD D +PG VPG G KTA+ LL+ +G LE +L
Sbjct: 158 PEEVKERWGVGPDRIQDLLALAGDSADNIPG----VPGIGPKTAVTLLEAYGDLEGVLTR 213
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
A + + +E L + AD R +Y ++AL
Sbjct: 214 AG--EIKQQKRRENLIEFADDARLSYRLVAL 242
>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
Length = 849
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 22/216 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD G R + P YK +R + L ++FS R + +
Sbjct: 50 ADYLAVVFD-TGSKNFRHAMYPQYKMNRPRLPEDLL--RQFSPLR---------EAVSAL 97
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
+ +++ EADDVIATL + + + + + DKD QLI E VQ+ P+ R
Sbjct: 98 GIASEEVQNFEADDVIATLSTKYASQDVQVRIVTADKDLLQLIGEHVQVFDPI----RNR 153
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ T ++ + ++ P L + + GD D +PG VP G KTA KL+ + GSL+N+
Sbjct: 154 YLTNEYVVDKFGVTPDRLLDVLALTGDTSDNIPG----VPSIGVKTAAKLVNQFGSLDNV 209
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
LN A V + +E L +HAD + ++++L+R
Sbjct: 210 LNCA--EQVEQKKCREMLIQHADQATLSRDLVSLQR 243
>gi|408501160|ref|YP_006865079.1| DNA polymerase I [Bifidobacterium asteroides PRL2011]
gi|408465984|gb|AFU71513.1| DNA polymerase I [Bifidobacterium asteroides PRL2011]
Length = 964
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLP 137
R F+ L V +P+ +G + ++ D ++ P + FD +GGT R +LP
Sbjct: 26 RAFYALPVESFTTSTGQPTNAVWG-FATMLADVMAKEKPTHMGVAFDVKGGT-FRNAMLP 83
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQ 197
YK R ++L + I D+L + ++ G+E DD+I TL
Sbjct: 84 QYKGTREAAPKELLSQL-----------PLIQDLLKGLGITYIEKPGYEGDDIIGTLATM 132
Query: 198 VLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
Q G+R +V S D+D QL+ +D+ ++ P T + + +Y P L
Sbjct: 133 GEQAGFRTLVLSGDRDAFQLVDDDITVLYPGHHFKNLKHMTPQAIMDRYKVTPEQYPDLA 192
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHA 317
+ G+ D +PG VPG G A K + K+GSL+++L A +G Q AL ++A
Sbjct: 193 AMRGEGADNIPG----VPGVGDGYAAKWINKYGSLDSILEHA--DEIGGKKGQ-ALAENA 245
Query: 318 DYLRRNYEVLALRR 331
D +R N +V AL R
Sbjct: 246 DQVRLNRKVNALVR 259
>gi|424836452|ref|ZP_18261101.1| DNA polymerase I [Clostridium sporogenes PA 3679]
gi|365977146|gb|EHN13249.1| DNA polymerase I [Clostridium sporogenes PA 3679]
Length = 875
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D ++A FD + T R + YKA R+K +L +Q+F + D+L
Sbjct: 53 DYIVAAFDRKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKDLLSALA 100
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ + +I+G EADD+I TL +KG + + DKD QL +++V++V+ + +
Sbjct: 101 INIFEIDGFEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEI 160
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y I ++ P + ++ ++GD D +PGI PG G KTA KL+K++ S+E +L
Sbjct: 161 YDKNRMIEEFGVTPKEFIDVKGLMGDTSDNIPGI----PGIGEKTAFKLIKEYKSIEKVL 216
Query: 297 -NAAAVR 302
N +R
Sbjct: 217 ENIENIR 223
>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
Length = 906
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 27 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 74
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 75 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 134
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 135 ------QGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 184
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L + D + +Y++ ++
Sbjct: 185 ALYANLDKIAALGFRGSKTMAQKLEDNRDNAKLSYQLATIK 225
>gi|389879068|ref|YP_006372633.1| DNA polymerase I [Tistrella mobilis KA081020-065]
gi|388529852|gb|AFK55049.1| DNA polymerase I [Tistrella mobilis KA081020-065]
Length = 938
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 22/215 (10%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
A+ + +FD G R ++ P YKAHR + +L I D
Sbjct: 58 AERLAVIFDA-GRLSFRNEIYPDYKAHRPEPPEELVPQ-----------FPLIRDATRAF 105
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
+P +++ G+EADD+IA+ + G V+ S DKD QLI + V L+ P+ +
Sbjct: 106 ALPCIELPGYEADDLIASYAKAAREAGQEVVIVSADKDLMQLIQDGVSLMDPM----KAK 161
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
L+ +A++ P + ++ + GD D VPG VPG G KTA +L+ ++G L+ L
Sbjct: 162 KIGLEEVMAKFGVAPDKVVDVQALAGDSTDNVPG----VPGIGVKTAAQLIGEYGDLDTL 217
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L A + + ++ L +AD R + E++ LR
Sbjct: 218 LARAG--EIKQPKRRQTLIDNADKARVSRELVRLR 250
>gi|408675504|ref|YP_006875252.1| DNA polymerase I [Emticicia oligotrophica DSM 17448]
gi|387857128|gb|AFK05225.1| DNA polymerase I [Emticicia oligotrophica DSM 17448]
Length = 960
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVFDG 125
K++F LD L Y P L S G S F + VI FD
Sbjct: 4 KKLFLLDAMALIYRAHFAFMKAPRLTSTGLNTSCVFGVANAILEVIQKEKPTHIGVAFDL 63
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
GGT R P YKA+R++ +T + + + V ++P++ + G+
Sbjct: 64 PGGT-FRNDWFPEYKANRQEQPEDITIAIPYVKKLVE-----------AMDIPLLMLAGY 111
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL Q + + + +PDKD+ QL+ + + + P +K +
Sbjct: 112 EADDVIGTLAKQAAKHDFEVFMMTPDKDYGQLVEDHIYIYKPAIGGKDAEKLGVKEVCEK 171
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+ + P + + ++GD VD +PG VPG G KTA KL+ +GS+EN+ A
Sbjct: 172 WGIEHPEQVVDILGLMGDAVDNIPG----VPGVGEKTAAKLIATYGSIENMYENA 222
>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
Length = 948
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 103/234 (44%), Gaps = 35/234 (14%)
Query: 102 FGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFS 157
F LS D H D + FD +GGT R Q+LP YK R + L QL Q+
Sbjct: 51 FATMLSQVID-AEHPDHLAVAFDVKGGT-FRNQMLPQYKGTRDAAPEELLSQLPLIQQ-- 106
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
+L LG V ++ G+E DDVI TL Q GYR +V S D+D QL
Sbjct: 107 ----------MLTALG---VTYIEKPGYEGDDVIGTLASMGDQAGYRTLVLSGDRDAFQL 153
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
I++D+ ++ P T +Y+ P L + G+ D +PG VPG
Sbjct: 154 INDDITVLYPGHHFKDLKHMTPDAVQEKYHVSPAQYPDLAALRGETADNIPG----VPGV 209
Query: 278 GRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
G A K + ++G LE ++ ++A E K + LR N E + L R
Sbjct: 210 GDGFAAKWINQYGGLEQII----------EHADEISGKKGEALRENIEQVKLNR 253
>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
Length = 956
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ FG L++ +S P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNSQGEPTGAMFG-VLNMLKSLISQVRPSHIAVVFDAKGKT-FRDKLFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R Q + D++ +P++ +EG EADDVI TL Q +G + +
Sbjct: 85 PDDLR-----------RQIQPLHDIIRSLGIPLLSVEGVEADDVIGTLAVQASSQGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMSNTLLDR------QGVIEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMSEV 214
>gi|357010982|ref|ZP_09075981.1| PolA [Paenibacillus elgii B69]
Length = 895
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 164 SHQFIL--DVLGKCNVPVVKIEGHEADDVIATLVGQVLQK-GYRAVVASPDKDFKQLISE 220
S QF L D+LG + +++G+EADD+I TL +K G VV + DKD QL S
Sbjct: 84 SEQFPLLRDLLGSFGIRQFELDGYEADDIIGTLTRIADEKDGIEVVVVTGDKDMLQLASG 143
Query: 221 DVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
V + + + + + H Y PH + L+ ++GD D +PGI PG G K
Sbjct: 144 QVTIALTRKGISEVELFDPAHIEETYGLKPHQIIDLKGLMGDTSDNIPGI----PGVGEK 199
Query: 281 TALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
TALKLL ++GS+EN+L A+ + G+ E + ++AD R + E+ + R
Sbjct: 200 TALKLLHEYGSVENVLEHAS-QIKGK--LGEKVAENADSARMSKELATIFR 247
>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 875
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKDEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGENFRHHIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + + G +
Sbjct: 83 PEDLIVQLPLVR-----------DVASSLNFPILEKNGYEADDIIATFATKTVMLGEEVI 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL+SE++++ PL + + T + + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMSENIKIYDPL----KGKYITEEDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 952
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNRLGEPTGAMYG-VLNMLKSLISQVNPSHIAVVFDTKGKT-FRYELFKQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ I+ LG +P++ IEG EADDVI TL Q + G +
Sbjct: 85 PDDL-------RPQIEPLHR-IIKALG---IPLISIEGVEADDVIGTLAVQAAKDGKDVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDFLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSLE +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSLEQI 214
>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
Length = 922
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R L YKAHR L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDLYEEYKAHRPPMPDDL-------RSQIEPLHR-IIRA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARQASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ + A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPEEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLL-NAAAVRTVGRDYAQEALTK---HADYLRRNYEVLALR 330
+ NLL V +G A+ K +AD L+ +YE+ ++
Sbjct: 211 VANLLAEPEKVTELGFRGAKTMAAKIIDNADMLKLSYELATIK 253
>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
Length = 922
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R L YKAHR L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDLYEEYKAHRPPMPDDL-------RSQIEPLHR-IIRA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARQASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ + A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPEEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLL-NAAAVRTVGRDYAQEALTK---HADYLRRNYEVLALR 330
+ NLL V +G A+ K +AD L+ +YE+ ++
Sbjct: 211 VANLLAEPEKVTELGFRGAKTMAAKIIDNADMLKLSYELATIK 253
>gi|375141661|ref|YP_005002310.1| DNA polymerase I [Mycobacterium rhodesiae NBB3]
gi|359822282|gb|AEV75095.1| DNA polymerase I [Mycobacterium rhodesiae NBB3]
Length = 902
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 42/273 (15%)
Query: 74 EKTKSKKRVFFLDVNPLCY-------------EGSRPSLQSFGRWLSLFFDQVSHADP-- 118
EK K + LD N L + +G + +G + ++ + + P
Sbjct: 8 EKATEKPTLMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYG-FTAMLINLLRDEQPTH 66
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R++ P YK R +A+ RG++ + + VLG +
Sbjct: 67 IAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQIDITKE----VLGALGIT 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S DV ++ P + + + +T
Sbjct: 115 VLAEPGFEADDIIATLATQAEDEGYRVLVVTGDRDSLQLVSPDVTVLYPRKGVSELTRFT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + GD D +PGI PG G KTA K + ++GSL+ L++
Sbjct: 175 PDAVLEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYGSLQTLVD- 229
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
V TV K D LR N + L R
Sbjct: 230 -RVDTVK--------GKVGDALRANLSSVVLNR 253
>gi|424658015|ref|ZP_18095284.1| DNA polymerase I [Vibrio cholerae HE-16]
gi|408057005|gb|EKG91874.1| DNA polymerase I [Vibrio cholerae HE-16]
Length = 934
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQVGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D + +Y++ ++
Sbjct: 213 ALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIK 253
>gi|399022982|ref|ZP_10725049.1| DNA polymerase I [Chryseobacterium sp. CF314]
gi|398083541|gb|EJL74246.1| DNA polymerase I [Chryseobacterium sp. CF314]
Length = 941
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 29/231 (12%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAVFDGE 126
KR+F +D + + G P L S G S F + + P +AV
Sbjct: 7 KRLFLIDAYAMIFRGYYALIRNPRLTSTGIDTSAIFGFTNSLIELIRREKPTHLAVVFDV 66
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G R YKA+R + + + + +I +L ++P + +EG+E
Sbjct: 67 GQASVRTDDYSDYKANRSE-----------TPEAIKIAVPYIHRILEAMHIPNLGVEGYE 115
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ + ++GY + +PDKDF QL+++ +++ P ++ A+Y
Sbjct: 116 ADDVIGTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKMYKPGLKGGDIEILGVEEVKAKY 175
Query: 247 NC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
DP + ++GD VD +PG+ G G KTA+K LK+ G++ENLL
Sbjct: 176 EIEDPKQVIDFLAMMGDAVDNIPGLD----GVGEKTAMKFLKEFGTIENLL 222
>gi|453382177|dbj|GAC83384.1| DNA polymerase I [Gordonia paraffinivorans NBRC 108238]
Length = 915
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 28/221 (12%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+ S+ + + +P + A FD T R ++ P YKA R K + FS G+V
Sbjct: 59 FTSMLINLLRDEEPTHIAAAFDVSRKT-FRSEMYPEYKAQRAK------SPDEFS-GQVE 110
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
+ + +LD LG V V+ +EG+EADD+IATL Q ++GY+ ++ + D+D QL+
Sbjct: 111 LTKE-VLDALG---VTVLAMEGYEADDIIATLATQAREQGYKVLIVTGDRDSLQLVDPST 166
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P + + + +T + +Y P + GD D +PGI PG G KTA
Sbjct: 167 TVLYPRKGVSDLTRFTPEEVEKKYGLTPTQYPDYAALRGDPSDNLPGI----PGVGEKTA 222
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
K ++++GSL L+ D+ E K D LR N
Sbjct: 223 SKWIREYGSLAALV----------DHVDEVKGKVGDALRAN 253
>gi|261749394|ref|YP_003257079.1| DNA polymerase I [Blattabacterium sp. (Periplaneta americana) str.
BPLAN]
gi|261497486|gb|ACX83936.1| DNA polymerase I [Blattabacterium sp. (Periplaneta americana) str.
BPLAN]
Length = 305
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 42/243 (17%)
Query: 78 SKKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVI----------------- 120
+ K++F +D + Y+G +++ LF Q + P+I
Sbjct: 2 NNKKLFLIDTYTILYQGYYAYIKN-----PLFTSQGINTSPIIHFTYFLINTLNEEKPSY 56
Query: 121 --AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
A FD T R++ P YKAHR+K R ++ + +++++L +
Sbjct: 57 MAAFFDTSRKT-FRKKEYPKYKAHRKKTPRDISIAM-----------PYVVNILKSFRIS 104
Query: 179 -VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
+G+EADD+I T+ + +KGY + + DKDF QL+++++Q+ P +
Sbjct: 105 SFYAKDGYEADDLIGTIAKKAEKKGYMIYIITLDKDFSQLVTKNIQIYRPPFKGNPKKIL 164
Query: 238 TLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ ++ +P + L ++GD D +PG+ PG G K A K ++K+GSLE L
Sbjct: 165 GIEEIKKKFGVIEPKQVIDLWSMMGDSSDNIPGL----PGIGEKYARKFIQKYGSLEKFL 220
Query: 297 NAA 299
N+
Sbjct: 221 NST 223
>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
Length = 922
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R L YKAHR L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDLYEEYKAHRPPMPDDL-------RSQIEPLHR-IIRA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARQASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ + A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPEEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLL-NAAAVRTVGRDYAQEALTK---HADYLRRNYEVLALR 330
+ NLL V +G A+ K +AD L+ +YE+ ++
Sbjct: 211 VANLLAEPEKVTELGFRGAKTMAAKIIDNADMLKLSYELATIK 253
>gi|344167306|emb|CCA79516.1| DNA polymerase I (POL I) [blood disease bacterium R229]
Length = 944
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLTERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGV--- 164
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 165 ---LAKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLDWLPKGRELLTVK 245
>gi|402818281|ref|ZP_10867865.1| DNA polymerase I [Paenibacillus alvei DSM 29]
gi|402504028|gb|EJW14559.1| DNA polymerase I [Paenibacillus alvei DSM 29]
Length = 852
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 12/139 (8%)
Query: 164 SHQF-----ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLI 218
S QF +LD LG VP ++ G+EADD+I TL + ++G V S DKD QL+
Sbjct: 45 SEQFPILKQLLDALG---VPHFEMSGYEADDIIGTLTREANEQGIEMAVVSGDKDMLQLV 101
Query: 219 SEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFG 278
S+ V +++ + + YT +Y +P + ++ ++GD D +PG VPG G
Sbjct: 102 SDQVTILLTRKGVTEIEKYTPAALQEKYGIEPLQIIDMKGLMGDSSDNIPG----VPGIG 157
Query: 279 RKTALKLLKKHGSLENLLN 297
KTALKLL + GS+EN+L
Sbjct: 158 EKTALKLLHQFGSVENVLE 176
>gi|209972979|ref|YP_002300426.1| gp32.85 [Bacillus phage SPO1]
gi|209871299|gb|ACI91055.1| gp32.85 [Bacillus phage SPO1]
Length = 314
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 17/224 (7%)
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSL--FFDQVSHADPVIAVFDGEGGTEHRRQLLPS 138
RVF + L + PS G S+ ++ + V ++DG G +E R++L P
Sbjct: 13 RVFHTPQSSLTKKDGTPSGVILGVINSIKGLLEKFPDTEAVTVMWDG-GRSEWRKELYPE 71
Query: 139 YKAHRRKFLRQLTASQRFS--RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
YKA R ++ + ++ H+ L K + VK+ G+EADD+IA +
Sbjct: 72 YKAQRDYGEDDEEKAEAYQGLWDQIEELHKN----LDKLAIDSVKLTGYEADDLIALMTK 127
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
Q+ G ++ + DKD QL+SE + P +D+ L +++ + ++ +
Sbjct: 128 QLESLGKNVLIVTSDKDMLQLVSEKTSVYSPYRDI----VIGLSNFVENTGVELNAYMGY 183
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
R +VGD D + G VPG G KTA L+KK+G ++N+L +
Sbjct: 184 RALVGDTSDNIIG----VPGIGEKTAQNLMKKYGHIDNILQSTG 223
>gi|118579386|ref|YP_900636.1| ribonuclease H [Pelobacter propionicus DSM 2379]
gi|118502096|gb|ABK98578.1| ribonuclease H [Pelobacter propionicus DSM 2379]
Length = 482
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 106 LSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH 165
LSL Q + D + VFD RRQ+ P YKAHR L A
Sbjct: 45 LSLL--QENRPDYLAVVFDPPREGTFRRQIYPPYKAHRDDMPTDLAAQ-----------L 91
Query: 166 QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV 225
+I V+ N+P ++ G EADDVIATL + +G R V + DKD Q++ E + L+
Sbjct: 92 PYIRQVVQALNIPALEAPGFEADDVIATLARRSADEGARVTVVTGDKDLLQIVGERIGLL 151
Query: 226 MPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
++ L + + ++ P + + GD D +PG VPG G KTA +L
Sbjct: 152 DTMKGLRSGP----REVLDRFGVPPELVPDVLGLAGDSSDNIPG----VPGIGEKTAAEL 203
Query: 286 LKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRRY 332
+++ GSLE +L ++ V +E L+ + D R + + LA RY
Sbjct: 204 VRRFGSLEGVLRWKSL--VNGRQRRENLSAYGDQARLS-KTLATVRY 247
>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
Length = 954
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL- 169
+Q +H ++ FD G T R + YK R++ +L S QF L
Sbjct: 125 EQPTH---ILVAFDA-GKTTFRHETFQDYKGGRQQTPPEL-------------SEQFPLV 167
Query: 170 -DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228
++L +P +++ +EADD+I T+ + ++G+ V S D+D QL S V + +
Sbjct: 168 RELLKAYRIPAYELDHYEADDIIGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITK 227
Query: 229 QDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
+ + YT + + +Y P + L+ ++GD D +PG VPG G+KTA+KLLK+
Sbjct: 228 KGITDIESYTPETVVEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGKKTAVKLLKQ 283
Query: 289 HGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
G++EN+L A++ + + +E L ++ D
Sbjct: 284 FGTVENVL--ASIDEIKGEKLKENLRQYRD 311
>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
gi|337736315|ref|YP_004635762.1| DNA polymerase I [Clostridium acetobutylicum DSM 1731]
gi|384457822|ref|YP_005670242.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
gi|336291919|gb|AEI33053.1| DNA polymerase I [Clostridium acetobutylicum DSM 1731]
Length = 871
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGK 174
D ++ FD + T R + YKA R+K +L S QF + ++L K
Sbjct: 51 DYIVTTFDRKAPT-FRHKEYEDYKAGRKKMPPEL-------------SEQFPVLKELLEK 96
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ + +I+G EADD+I TL +KG + + DKD QL ++V++V+ + +
Sbjct: 97 LAINIFEIDGFEADDLIGTLACFAKEKGIEVYIVTGDKDALQLADDNVKVVINKKGMTEK 156
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
Y I ++ P + ++ ++GD+ D +PG VPG G KTA KL++++GS+EN
Sbjct: 157 EIYDKNRMIEEFGVTPVQFIDVKGLMGDNSDNIPG----VPGIGPKTAFKLIQEYGSVEN 212
Query: 295 LLN------AAAVRTVGRDYAQEAL 313
+L+ ++ +YA++A+
Sbjct: 213 VLDNIQNIKGKKIKENLENYAEQAV 237
>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
Length = 878
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHKTFEEYKGGRQQTPPEL-------------SEQFPLLRELLDAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++E +EADD+I TL + ++G+ V S D+D QL S+ V + + + +
Sbjct: 100 IRFYELENYEADDIIGTLCTKAEKEGFEVKVISGDRDLTQLASDHVTVDITKKGITDVES 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTALKLLK+ G++EN+L
Sbjct: 160 YTPETVQEKYGLTPEQIIDLKGLMGDKSDNIPG----VPGIGEKTALKLLKEFGTIENIL 215
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
+ ++ V + +E L K+ D
Sbjct: 216 D--SIEQVSGNKLRENLAKYRD 235
>gi|414341221|ref|YP_006982742.1| DNA polymerase I [Gluconobacter oxydans H24]
gi|411026556|gb|AFV99810.1| DNA polymerase I [Gluconobacter oxydans H24]
Length = 930
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD G R ++ P YKAHR + L R + G I D NVP ++
Sbjct: 60 IFDA-GRQTFRNEIYPQYKAHRPEPPEDL-------RPQFG----LIRDATAAFNVPSIE 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G EADD+IA+ V+ +G R + S DKD QLI V+L+ P+ +
Sbjct: 108 LAGWEADDLIASYAKAVVAQGGRCTIVSSDKDLMQLICPGVELMDPM----KQKPIREAE 163
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
A++ P + ++ ++GD D VPG VPG G K A +L+ ++G+LE +L+AA
Sbjct: 164 VEAKFGVRPDQVVDVQALMGDSTDNVPG----VPGIGAKGAAQLINEYGTLEKVLDAA 217
>gi|373852977|ref|ZP_09595777.1| 5'-3' exonuclease, resolvase-like domain-containing protein
[Opitutaceae bacterium TAV5]
gi|372475206|gb|EHP35216.1| 5'-3' exonuclease, resolvase-like domain-containing protein
[Opitutaceae bacterium TAV5]
Length = 300
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 105 WLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGR 163
W+ + + P + VF GG++ R LLP YKAHR + L +
Sbjct: 37 WVKSLWKLMDQERPSGVCVFFDLGGSQDRLVLLPEYKAHREEMPEAL-----------AK 85
Query: 164 SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + +V + ++ G E+DD++A+ + + G +V S DKDF Q++S+ +
Sbjct: 86 QIEPVKEVTRLMGITAIEQHGVESDDLLASRAVALARAGDEVLVVSSDKDFAQIVSDRIT 145
Query: 224 LVMPLQDLDR---WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
+++P + W + ++ P IVGD D +PG VPG G K
Sbjct: 146 MLLPPPTANPKLGWRRLDVAGVREKFGVPPEQIADYLAIVGDTSDNIPG----VPGVGPK 201
Query: 281 TALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
TA K L++ GSLE LL A V + +E L AD LRRN + L
Sbjct: 202 TASKWLQEFGSLEALLARAG--EVKPERFREVLVARADDLRRNRRLTTL 248
>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
gi|419819937|ref|ZP_14343555.1| DNA polymerase I [Bacillus atrophaeus C89]
gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
gi|388476056|gb|EIM12761.1| DNA polymerase I [Bacillus atrophaeus C89]
Length = 880
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHSTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ + S DKD QL +E + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKIFSGDKDLTQLATEHTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PQHVEEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFHSVEKLLES 219
>gi|393785970|ref|ZP_10374114.1| DNA polymerase I [Bacteroides nordii CL02T12C05]
gi|392661084|gb|EIY54681.1| DNA polymerase I [Bacteroides nordii CL02T12C05]
Length = 935
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 13/222 (5%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQL 135
++FFLD L Y P + S G S V+ + V+ E T
Sbjct: 6 KLFFLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEDVLK---KENPTHIGVAF 62
Query: 136 LPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLV 195
PS R + Q A + + + S I D++ +P++++ G+EADDVI TL
Sbjct: 63 DPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADDVIGTLA 122
Query: 196 GQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNC-DPHSEL 254
+ Q+G + +PDKD+ QL++E V + P + ++ A+++ P +
Sbjct: 123 TKAGQQGITTYMMTPDKDYGQLVTEHVFMYRPKYGDKEFEVMGIEQVKAKFDIQSPSQVI 182
Query: 255 SLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ ++GD D +PG PG G KTA KL+ + G++ENLL
Sbjct: 183 DMLGLMGDASDNIPG----CPGVGEKTAQKLIAEFGNIENLL 220
>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
Length = 885
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD +G T R +L YK R+K +L Q+F R D+L N+
Sbjct: 55 IVVCFDRKGKT-FRSELYKDYKGTRQKTPNEL--EQQFPLVR---------DILKYMNIV 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +EADD+ TL ++GY++ + + DKD+ QL+ ++ ++M + +
Sbjct: 103 VLDSPVYEADDIAGTLSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVN 162
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
L+ Y P + L+ ++GD D +PG VPG G KT LKL+K++ ++ENL N
Sbjct: 163 LQSINDDYGISPQEFIDLKGLMGDSSDNIPG----VPGIGPKTGLKLIKEYSTIENLYN 217
>gi|432336475|ref|ZP_19587978.1| DNA polymerase I [Rhodococcus wratislaviensis IFP 2016]
gi|430776587|gb|ELB92007.1| DNA polymerase I [Rhodococcus wratislaviensis IFP 2016]
Length = 887
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 94/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R + P YKA+R TA F +G+V + D
Sbjct: 46 EQPSH---VAAAFDVSRQT-FRAEKFPEYKANRS------TAPDEF-KGQV----EITKD 90
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG +PV+ G EADD+IATL Q GYR +V + D+D QL+++ V ++ P +
Sbjct: 91 VLGALGIPVMAEAGFEADDIIATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKG 150
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T +Y P + GD D +PGI PG G KTA + +K++G
Sbjct: 151 VSDLTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATRWIKEYG 206
Query: 291 SLENLLN 297
L L++
Sbjct: 207 DLVGLVD 213
>gi|337294126|emb|CCB92111.1| DNA polymerase I [Waddlia chondrophila 2032/99]
Length = 883
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++AVFDG GTE R+ L P+YKA+R+ L R ++ + +F D+LG +P
Sbjct: 54 MVAVFDGPKGTERRKTLYPNYKANRKAMPEDL-------RYQIEWAQEFC-DLLG---IP 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ + EADD + ++ QKG + + DKD QL+SE + L
Sbjct: 103 KLVVPQVEADDTMGSVAKWAEQKGTEVYLCTSDKDLCQLVSEK---IFVLNTHKNNLIMG 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
K + P + IVGD D VPGI PGFG KTA K+L++ G+L++LL+
Sbjct: 160 SKEVKESFGVSPSQMIDYLAIVGDASDNVPGI----PGFGAKTAAKVLEEIGTLDHLLS 214
>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
Length = 897
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD G R + P YKA+R + L ASQ + DV NVP
Sbjct: 53 VALVFDA-GRRSFRHDIDPEYKANRPEAPDDL-ASQ----------FPLVRDVARALNVP 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V++ G EADD+IATL G+ G+ VV + DKDF QL+ + L P+ + +T
Sbjct: 101 VIEEPGFEADDIIATLAGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWT 160
Query: 239 LKHYIA-QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL- 296
+ + P + + I+GD +D VPGI G G TA L++ G+ E +L
Sbjct: 161 GPAEVEKKMGVRPEQVVEYQSILGDKIDNVPGIA----GVGEVTAAALIRHFGTTEAMLA 216
Query: 297 ---NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A + G + ++ + +A+ +R N ++ALRR
Sbjct: 217 RPGEIPAAVSRGGEKLRDKVVANAERIRTNRRLVALRR 254
>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
Length = 883
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++AVFDG GTE R+ L P+YKA+R+ L R ++ + +F D+LG +P
Sbjct: 54 MVAVFDGPKGTERRKTLYPNYKANRKAMPEDL-------RYQIEWAQEFC-DLLG---IP 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ + EADD + ++ QKG + + DKD QL+SE + L
Sbjct: 103 KLVVPQVEADDTMGSVAKWAEQKGTEVYLCTSDKDLCQLVSEK---IFVLNTHKNNLIMG 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
K + P + IVGD D VPGI PGFG KTA K+L++ G+L++LL+
Sbjct: 160 SKEVKESFGVSPSQMIDYLAIVGDASDNVPGI----PGFGAKTAAKVLEEIGTLDHLLS 214
>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 885
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD +G T R +L YK R+K +L Q+F R D+L N+
Sbjct: 55 IVVCFDRKGKT-FRSELYKDYKGTRQKTPNEL--EQQFPLVR---------DILKYMNIV 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +EADD+ TL ++GY++ + + DKD+ QL+ ++ ++M + +
Sbjct: 103 VLDSPVYEADDIAGTLSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVN 162
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
L+ Y P + L+ ++GD D +PG VPG G KT LKL+K++ ++ENL N
Sbjct: 163 LQSINDDYGISPQEFIDLKGLMGDSSDNIPG----VPGIGPKTGLKLIKEYSTIENLYN 217
>gi|1097211|prf||2113329A DNA polymerase
Length = 834
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P +
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-----KG 161
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 162 HLITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>gi|350273909|ref|YP_004885222.1| DNA polymerase I [Rickettsia japonica YH]
gi|348593122|dbj|BAK97083.1| DNA polymerase I [Rickettsia japonica YH]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGAHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
Length = 910
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 29/218 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD +G T R + P YKAHR L+ R + + + +
Sbjct: 50 ADYSACVFDAKGKT-FRDDIYPDYKAHRPPMPDDLS-----------RQIEPLHEAIRAM 97
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDR 233
P++ I+G EADDVI L Q +G + V+++ DKD QL++ ++LV M + LD
Sbjct: 98 GWPLLMIDGVEADDVIGCLAQQAEAQGMQVVISTGDKDMAQLVTPHIKLVNTMTNEILDE 157
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
A++ P + ++GD VD VPG++ V P KTA+K L +HGSL+
Sbjct: 158 AGVE------AKFGIPPSLIIDYLTLIGDSVDNVPGVEKVGP----KTAVKWLTQHGSLD 207
Query: 294 NLL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
N++ NAA + V + ++AL D+L E++ +R
Sbjct: 208 NIIANAANIGGVVGNNLRKAL----DWLPTGRELIKIR 241
>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
Length = 874
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 105 WLSLFFDQVSHADP-VIAVFDGEGGTEHRRQLLPSYKAHRR----KFLRQLTASQRFSRG 159
+L++ F + P +AV +G R L YKA R+ +F QL
Sbjct: 40 FLTMLFKLLDEEQPDYVAVAFDKGRQTFRTALYEDYKATRKAPPDEFRPQL--------- 90
Query: 160 RVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLIS 219
+ +VL N+P ++E +EADD++ TL Q +G ++ + D+D QLIS
Sbjct: 91 ------DLLREVLTALNIPWFRVENYEADDIMGTLARQAAAEGLHTLIVTGDRDALQLIS 144
Query: 220 EDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGR 279
+ V +VM + + Y + A+Y P + L+ ++GD D +PG VPG G
Sbjct: 145 DRVTVVMTKKGITETVRYDPETLKAEYGLTPSQIIDLKALMGDASDNIPG----VPGVGE 200
Query: 280 KTALKLLKKHGSLENL 295
KTALKLL +G+++ +
Sbjct: 201 KTALKLLADYGTVDGV 216
>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
Length = 923
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 31/233 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIA---------VFDG 125
+++F LD L Y P + S G S V+ + V+ FD
Sbjct: 2 EKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAIMGFVNTLEDVLKKEQPTHIGIAFDP 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + YKA R + + + S I D++ +P++++ G+
Sbjct: 62 AGPT-FRHEAYQQYKAQREE-----------TPEVIRLSVPIIKDIIRAYRIPILEVSGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL + ++G R + +PDKD+ QL+S++V + P + ++ A+
Sbjct: 110 EADDVIGTLATEAGRQGIRTYMMTPDKDYGQLVSDNVFMYRPKYGDKEFEVMGVEEVKAK 169
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
++ P + + ++GD D +PG PG G KTA KL+ + GS+ENLL+
Sbjct: 170 FDIQSPAQVIDMLGLMGDTADNIPG----CPGVGEKTAQKLIAQFGSIENLLD 218
>gi|392407763|ref|YP_006444371.1| DNA polymerase I family protein [Anaerobaculum mobile DSM 13181]
gi|390620899|gb|AFM22046.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Anaerobaculum mobile DSM 13181]
Length = 854
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 19/182 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL-DVLGKC 175
D V+ FD +G T R + YK +R A + F +S FI+ +++ +
Sbjct: 53 DRVVVFFDAKGET-FRHEAYKEYKENRP------PAPEEF------KSQIFIIKELMKRF 99
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
PV++IEG EADD IA+ V ++ +KG +V + DKD QLI +V+++ P++ + +
Sbjct: 100 GYPVIEIEGVEADDAIASCVHRLKEKG-EILVLTADKDMLQLIRTNVKVLRPIKGVSVFK 158
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
Y K + ++ P S ++GD VD +PG VPG G K A L++K+G+LENL
Sbjct: 159 TYDEKTFEDEFGFPPSSFPDYLALIGDKVDNIPG----VPGIGPKRASALIQKYGTLENL 214
Query: 296 LN 297
Sbjct: 215 FE 216
>gi|398305966|ref|ZP_10509552.1| DNA polymerase I [Bacillus vallismortis DV1-F-3]
Length = 880
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDQTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFASVEKLLES 219
>gi|391229289|ref|ZP_10265495.1| 5'-3' exonuclease (including N-terminal domain of PolI)
[Opitutaceae bacterium TAV1]
gi|391218950|gb|EIP97370.1| 5'-3' exonuclease (including N-terminal domain of PolI)
[Opitutaceae bacterium TAV1]
Length = 300
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 105 WLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGR 163
W+ + + P + VF GG++ R LLP YKAHR + L +
Sbjct: 37 WVKSLWKLMDQERPSGVCVFFDLGGSQDRLVLLPEYKAHREEMPEALV-----------K 85
Query: 164 SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + +V + ++ G E+DD++A+ + + G +V S DKDF Q++S+ +
Sbjct: 86 QIEPVKEVTRLMGITAIEQHGVESDDLLASRAVALARAGDEVLVVSSDKDFAQIVSDRIT 145
Query: 224 LVMPLQDLDR---WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
+++P + W + ++ P IVGD D +PG VPG G K
Sbjct: 146 MLLPPPTANPKLGWRRLDVAGVREKFGVPPEQIADYLAIVGDTSDNIPG----VPGVGPK 201
Query: 281 TALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
TA K L++ GSLE LL A V + +E L AD LRRN + L
Sbjct: 202 TASKWLQEFGSLEALLARAG--EVKPERFREVLVARADDLRRNRRLTTL 248
>gi|346224772|ref|ZP_08845914.1| DNA polymerase I [Anaerophaga thermohalophila DSM 12881]
Length = 921
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 76 TKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTE 130
++ +K++F LD L + P + S G S F + ++ V + E +
Sbjct: 2 SEKEKKLFLLDAYALIFRAYYAFIRNPRVNSKGLNTSAIF---GFTNSLLEVLNKENPSH 58
Query: 131 HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDV 190
PS R + A++ + + ++ +I +L N+ +++++G+EADDV
Sbjct: 59 IAVAFDPSGPTFRNELYEAYKANREATPEDIKKAVPYIKKILEAFNINIIQVDGYEADDV 118
Query: 191 IATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL---QDLDRWSFYTLKHYIAQYN 247
+ TL + +G++ + +PDKD+ QL++E + P +++ W ++ N
Sbjct: 119 VGTLSRKAAAEGFKTFMVTPDKDYAQLVTEHTLMYKPKSAGNEIEEWGIDEIRKKFGVEN 178
Query: 248 CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
P + L + GD D +PG PG G K A ++ K+GS+EN+
Sbjct: 179 --PGQVIDLLALWGDSADNIPG----CPGIGEKRAKDIISKYGSIENV 220
>gi|379712917|ref|YP_005301256.1| DNA polymerase I [Rickettsia philipii str. 364D]
gi|376329562|gb|AFB26799.1| DNA polymerase I [Rickettsia philipii str. 364D]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 871
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 30/230 (13%)
Query: 80 KRVFFLDVNPLCYEG-------------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGE 126
KR+ LD N L + ++ F L D++ + D +IA FD +
Sbjct: 2 KRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEI-NPDNIIATFDKK 60
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
T R + YKA R+K +L G I ++L + +I+G E
Sbjct: 61 SPT-FRHKEYSEYKAGRKKMPPEL-----------GEQFPIIKELLKYMGIKTFEIDGFE 108
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I T+ + + + DKD QL SE ++V+ + + + Y K ++ ++
Sbjct: 109 ADDIIGTISKFGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEF 168
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + ++ ++GD D +PG VPG G KTA KL+K++GSLE +L
Sbjct: 169 EITPTQFIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIKEYGSLEEVL 214
>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
Length = 871
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 30/230 (13%)
Query: 80 KRVFFLDVNPLCYEG-------------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGE 126
KR+ LD N L + ++ F L D++ + D +IA FD +
Sbjct: 2 KRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEI-NPDNIIATFDKK 60
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
T R + YKA R+K +L G I ++L + +I+G E
Sbjct: 61 SPT-FRHKEYSEYKAGRKKMPPEL-----------GEQFPIIKELLKYMGIKTFEIDGFE 108
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I T+ + + + DKD QL SE ++V+ + + + Y K ++ ++
Sbjct: 109 ADDIIGTISKFGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEF 168
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + ++ ++GD D +PG VPG G KTA KL+K++GSLE +L
Sbjct: 169 EITPTQFIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIKEYGSLEEVL 214
>gi|407781656|ref|ZP_11128873.1| DNA polymerase I [Oceanibaculum indicum P24]
gi|407207282|gb|EKE77219.1| DNA polymerase I [Oceanibaculum indicum P24]
Length = 938
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ P+YKA R + L +FS I D + NVP ++
Sbjct: 74 IFDSARET-FRNEIYPAYKAQRPEPPEDL--RPQFS---------IIRDAVRAFNVPSIE 121
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G EADD+IAT + KG V+ S DKD QL+ + V ++ P+++
Sbjct: 122 MPGFEADDLIATYAKEARAKGMDVVIVSSDKDLMQLVRDGVTMLDPIKN----RPIGPDE 177
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + ++ + GD VD VPG VPG G KTA +L+ +G LE LL A
Sbjct: 178 VMEKFGVAPDKVVDVQSLAGDSVDNVPG----VPGIGVKTAAQLITDYGDLETLL--ARA 231
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ + +E+L ++A+ R + E++ LR
Sbjct: 232 TEIKQPKRRESLIEYAEQARISRELVKLR 260
>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
Length = 935
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 31/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSL-------FFDQVSHADPV-IAV-F 123
S K++F LD + L Y ++P + S G S +D + P IAV F
Sbjct: 2 SDKKLFLLDGHALVYRAHFAFITKPLVNSKGVNTSAINGFTRQLWDLMRTEKPTHIAVAF 61
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D G T R + YKA+R + + ++ + +I ++ ++P+V ++
Sbjct: 62 DPHGPT-FRHDMYEPYKANREEQPQDISIA-----------IPWIKKIIEAMHIPIVMVQ 109
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADDVI TL Q ++GY + +PDKD+ QL+SE++ + P + + +K
Sbjct: 110 GYEADDVIGTLAKQAEKEGYTVYMVTPDKDYGQLVSENIFMYKPSRQGNGIEIMGVKEVC 169
Query: 244 AQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + + L ++GD VD +PGI PG G KTA KLL + ++E ++
Sbjct: 170 ENWGIKRVDQVIDLLGLMGDAVDNIPGI----PGVGEKTAAKLLDRFDTIEGVI 219
>gi|341584358|ref|YP_004764849.1| DNA polymerase I [Rickettsia heilongjiangensis 054]
gi|340808583|gb|AEK75171.1| DNA polymerase I [Rickettsia heilongjiangensis 054]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGQNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKHGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|387825251|ref|YP_005824722.1| DNA polymerase I [Francisella cf. novicida 3523]
gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
Length = 897
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K P
Sbjct: 53 VAVVFDAKGKN-FRHQLYPEYKAHRKDMDDEL-------RVQIEPLHQII----KKMGFP 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL + ++GY+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGV 160
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
LK +Y P + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 161 LK----KYQISPQQIIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus HB8]
gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
Length = 834
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
Length = 889
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 25/237 (10%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIA--VFDGEGGTEHRRQLLPSYKA 141
F V L P+ FG + ++ ++ P A VFD +G T R ++ YKA
Sbjct: 17 FHAVRNLSNSKGLPTNAIFG-FTNMMLKLINDKKPEYAAMVFDAKGPT-FRHEMYKDYKA 74
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
+R L +I +V N+P+++++G+EADD+I TL + ++
Sbjct: 75 NRPPMDEALAVQ-----------IPYIKNVTEAFNMPMLEMQGYEADDLIGTLAKKAEKQ 123
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
G+ V+ + DKDF QL++ + P++D R T++ + P + + + G
Sbjct: 124 GFMVVMVTGDKDFNQLVTNKSVVWDPMKDETR----TVESITEKQGLPPDKVIEIMALSG 179
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
D D +PG VPG G KTA+ L+++ GSLE + V T+ + +E L + D
Sbjct: 180 DSSDNIPG----VPGIGPKTAIALIQEFGSLEGVYE--GVETITKKKQKENLQTYKD 230
>gi|404443508|ref|ZP_11008677.1| DNA polymerase I [Mycobacterium vaccae ATCC 25954]
gi|403655330|gb|EJZ10193.1| DNA polymerase I [Mycobacterium vaccae ATCC 25954]
Length = 918
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH + A FD T R++ P YK R +A+ RG++ + +
Sbjct: 69 EQPSH---IAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQIDITKE---- 113
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG + V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P +
Sbjct: 114 VLGALGITVLAEPGFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDDVTVLYPRKG 173
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T + + +Y P + GD D +PGI PG G KTA K + ++G
Sbjct: 174 VSELTRFTPEAVVEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIVEYG 229
Query: 291 SLENLLN 297
SL+ L++
Sbjct: 230 SLQALVD 236
>gi|378721846|ref|YP_005286733.1| DNA polymerase I [Rickettsia rickettsii str. Colombia]
gi|376326870|gb|AFB24109.1| DNA polymerase I [Rickettsia rickettsii str. Colombia]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
Length = 944
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLTERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGV--- 164
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 165 ---LAKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLGEYGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLDWLPKGRELLTVK 245
>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 999
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 115 TEGFEADDIIATYARQAEASGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL+ A
Sbjct: 171 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLDRATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 227 IKQVKR---RETILANIDMARLSRDLVRLR 253
>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
gi|409911106|ref|YP_006889571.1| DNA polymerase I [Geobacter sulfurreducens KN400]
gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
Length = 891
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 20/185 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
H + VFD +G T R ++ P YKA+R L ++G I +++
Sbjct: 51 HPGRLAVVFD-KGRTTFRTEIYPDYKANRAAMPDDLVP-------QIGP----IKEMVRA 98
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
++PV+++EG+EADD+I T+ + ++G AVV + DKD Q++S+ ++L+ ++D
Sbjct: 99 FSIPVLELEGYEADDIIGTIARRCEEQGLEAVVVTGDKDLMQIVSDRIRLLDTMKD---- 154
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ + ++ P + + + GD D +PG VPG G KTA KL+++ GSL+
Sbjct: 155 RVSGIPEVVERFGVGPGQVIDILGLAGDTSDNIPG----VPGIGEKTATKLIQEFGSLDA 210
Query: 295 LLNAA 299
LL A
Sbjct: 211 LLERA 215
>gi|424916040|ref|ZP_18339404.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392852216|gb|EJB04737.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 999
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 115 TEGFEADDIIATYARQAEASGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL+ A
Sbjct: 171 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLDRATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 227 IKQVKR---RETILANIDMARLSRDLVRLR 253
>gi|379019646|ref|YP_005295880.1| DNA polymerase I [Rickettsia rickettsii str. Hlp#2]
gi|376332226|gb|AFB29460.1| DNA polymerase I [Rickettsia rickettsii str. Hlp#2]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
gi|378723191|ref|YP_005288077.1| DNA polymerase I [Rickettsia rickettsii str. Arizona]
gi|378724545|ref|YP_005289429.1| DNA polymerase I [Rickettsia rickettsii str. Hauke]
gi|379015908|ref|YP_005292143.1| DNA polymerase I [Rickettsia rickettsii str. Brazil]
gi|379018331|ref|YP_005294566.1| DNA polymerase I [Rickettsia rickettsii str. Hino]
gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
gi|376324432|gb|AFB21672.1| DNA polymerase I [Rickettsia rickettsii str. Brazil]
gi|376328215|gb|AFB25453.1| DNA polymerase I [Rickettsia rickettsii str. Arizona]
gi|376330897|gb|AFB28133.1| DNA polymerase I [Rickettsia rickettsii str. Hino]
gi|376333560|gb|AFB30793.1| DNA polymerase I [Rickettsia rickettsii str. Hauke]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
Length = 875
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y I
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|288818109|ref|YP_003432457.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
gi|384128873|ref|YP_005511486.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
gi|288787509|dbj|BAI69256.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
gi|308751710|gb|ADO45193.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Hydrogenobacter thermophilus TK-6]
Length = 289
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 8/129 (6%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
I ++L +PV+++ G+EADDVI + + L G+ + SPDKD QL+S+ VQ++ P
Sbjct: 90 IKELLKLLGIPVIEVPGYEADDVIGYITERALSFGFSVRIYSPDKDILQLVSQKVQVINP 149
Query: 228 LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLK 287
+ + +K ++ PH L +VGD D + G++ G G+KTA+K+L+
Sbjct: 150 IS----GEVFDIKRVEEKFGVKPHLIPHLLALVGDQTDNIEGVK----GIGKKTAIKVLE 201
Query: 288 KHGSLENLL 296
K+GS+EN+L
Sbjct: 202 KYGSIENIL 210
>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
Length = 950
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ ++ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLIAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q + G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAAKAGKDVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL++E + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNEHIMLINTMTNTLLDR------EGVIEKYGIPPELIIDYLALRGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GS++ +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSIQTI 214
>gi|386311837|ref|YP_006008002.1| DNA polymerase I [Shewanella putrefaciens 200]
gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
Length = 922
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R + YKA R L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDMYSEYKAQRPPMPDDL-------RSQIEPLHR-IIHA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARQASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPDEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLL----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ NLL N + + G + ++AD LR +YE+ ++
Sbjct: 211 VANLLAAPENVSDLGFRGAKTMAAKIIENADMLRLSYELATIK 253
>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
Length = 891
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 68 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 116 RYELENYEADDIMGTLAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 176 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 226
>gi|410110888|dbj|BAM64800.1| DNA polymerase I [Thermus thermophilus]
Length = 834
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>gi|423282583|ref|ZP_17261468.1| DNA polymerase I [Bacteroides fragilis HMW 615]
gi|404582151|gb|EKA86846.1| DNA polymerase I [Bacteroides fragilis HMW 615]
Length = 964
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 34/261 (13%)
Query: 54 FDRTVGRQLLGKADFCGNGLEKTKS---KKRVFFLDVNPLCYEG-----SRPSLQSFGRW 105
F+ + + FC ++K K+ ++F LD L Y P + S G
Sbjct: 5 FEHKSNNKTVNTVFFCTFTMKKLKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFN 64
Query: 106 LSLFFDQVSHADPVI---------AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRF 156
S V+ + V+ FD G T R + YKA R +
Sbjct: 65 TSAILGFVNTLEEVLKKENPTHIGVAFDPPGPT-FRHEAFEQYKAQREE----------- 112
Query: 157 SRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQ 216
+ + S I D++ +P++++ G+EADDVI TL + +G + +PDKD+ Q
Sbjct: 113 TPEAIRLSVPIIKDIIKAYRIPILEVAGYEADDVIGTLATEAGNQGITTYMMTPDKDYGQ 172
Query: 217 LISEDVQLVMPLQDLDRWSFYTLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVP 275
L+++ V + P + ++ A+++ P + + ++GD D +PG P
Sbjct: 173 LVTDHVFMYRPKYGDKEFEVMGVEQVKAKFDIQSPAQVIDMLGLMGDSSDNIPG----CP 228
Query: 276 GFGRKTALKLLKKHGSLENLL 296
G G KTA KL+ + GS+ENLL
Sbjct: 229 GVGEKTAQKLIAEFGSIENLL 249
>gi|402490816|ref|ZP_10837605.1| DNA polymerase I [Rhizobium sp. CCGE 510]
gi|401810842|gb|EJT03215.1| DNA polymerase I [Rhizobium sp. CCGE 510]
Length = 999
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D ++
Sbjct: 115 TEGFEADDIIATYARQAEASGADVTIVSSDKDLMQLVSPNVHMYDSMKD----KQISIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
+ ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 171 VVEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 227 IKQVKR---RETILANIDMARLSRDLVRLR 253
>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
gi|81527867|sp|Q92GB7.1|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGAHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
gi|62298349|sp|P52028.2|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
polymerase 1
gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
Length = 834
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>gi|404259820|ref|ZP_10963125.1| DNA polymerase I [Gordonia namibiensis NBRC 108229]
gi|403401685|dbj|GAC01535.1| DNA polymerase I [Gordonia namibiensis NBRC 108229]
Length = 915
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 26/205 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG V
Sbjct: 75 IAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---VT 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG EADD+IATL Q ++G++ ++ + D+D QL+ ++ P + + + +T
Sbjct: 123 VMAIEGFEADDIIATLATQAREQGFKVLIVTGDRDSLQLVDPSTTVLYPRKGVSDLTRFT 182
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L+
Sbjct: 183 PEEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLV-- 236
Query: 299 AAVRTVGRDYAQEALTKHADYLRRN 323
D+ E K D LR N
Sbjct: 237 --------DHVDEVKGKVGDALRAN 253
>gi|423389109|ref|ZP_17366335.1| DNA polymerase I [Bacillus cereus BAG1X1-3]
gi|423417504|ref|ZP_17394593.1| DNA polymerase I [Bacillus cereus BAG3X2-1]
gi|401107783|gb|EJQ15728.1| DNA polymerase I [Bacillus cereus BAG3X2-1]
gi|401642384|gb|EJS60095.1| DNA polymerase I [Bacillus cereus BAG1X1-3]
Length = 877
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L NVP
Sbjct: 54 MLVAFDA-GKTTFRHKTYSDYKGGRQKTPPEL--SEQFP---------FIREMLDAFNVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|383484503|ref|YP_005393416.1| DNA polymerase I [Rickettsia parkeri str. Portsmouth]
gi|378936857|gb|AFC75357.1| DNA polymerase I [Rickettsia parkeri str. Portsmouth]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGAHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGAHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|402703044|ref|ZP_10851023.1| DNA polymerase I [Rickettsia helvetica C9P9]
gi|14916560|sp|Q9RLB6.1|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
Length = 921
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHYIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGENVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL+SE++++ PL R + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMSENIKIYDPL----RGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
Length = 878
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 80 KRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFDGE 126
K++ LD N L Y + P L + F L D+ ++A FD
Sbjct: 9 KKILLLDGNSLAYRAFFALPLLTNEHGIHTNAVYGFTMMLQKILDEEQPTHMIVA-FDA- 66
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YK R+K +L S++F R ++D G + ++E +E
Sbjct: 67 GKTTFRHKTFSEYKGGRQKTPPEL--SEQFPYLRK------LIDAYG---IKRYELENYE 115
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I TL + ++G VV S DKD QL S + + + + YT++H +Y
Sbjct: 116 ADDIIGTLSLEAEREGDEVVVISGDKDLTQLASPTTTVYITRKGITDIEKYTVEHIKEKY 175
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
P + ++ ++GD D +PG VPG G KTALKLL HGS+E + A
Sbjct: 176 GLTPLQIIDMKGLMGDASDNIPG----VPGVGEKTALKLLAAHGSVEGVYEA 223
>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
Length = 871
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 80 KRVFFLDVNPLCYEG-------------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGE 126
KR+ LD N L + ++ F L D++ + D +IA FD +
Sbjct: 2 KRLLILDSNSLMNRAFYALPPLTNDDGVNTNAIYGFTNMLFKMKDEI-NPDNIIATFDKK 60
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
T R + YKA R+K +L G I ++L + +I+G E
Sbjct: 61 SPT-FRHKEYSEYKAGRKKMPPEL-----------GEQFPIIKELLKYMGIKTFEIDGFE 108
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+I T+ + + + DKD QL SE ++V+ + + + Y K ++ ++
Sbjct: 109 ADDIIGTISKFGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEF 168
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + ++ ++GD D +PG VPG G KTA KL+K++G+LE++L
Sbjct: 169 EITPTQFIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIKEYGTLEDVL 214
>gi|407786617|ref|ZP_11133762.1| DNA polymerase I [Celeribacter baekdonensis B30]
gi|407201338|gb|EKE71339.1| DNA polymerase I [Celeribacter baekdonensis B30]
Length = 935
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 29/221 (13%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
D +HA +FD G T R L P+YKA+R +L +R +
Sbjct: 58 DAPTHA---AVIFDYSGKT-FRNDLFPAYKANRPPAPEELVPQFPLTR-----------E 102
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
NV ++IEG EADD+I TL Q + G R + S DKD QLI V+++ P+++
Sbjct: 103 ATRAFNVSCIEIEGFEADDIIGTLSCQAREAGGRVTIISSDKDLMQLIGGGVEMLDPMKN 162
Query: 231 --LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
+DR ++ P + ++ + GD VD VPG PG G KTA L+ +
Sbjct: 163 KRIDREGVEE------KFGVGPERVVDVQALAGDSVDNVPG----APGIGIKTAALLINE 212
Query: 289 HGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
+G L+ LL A + + ++AL + D +R + +++ L
Sbjct: 213 YGDLDTLL--ARAEEIKQPKRRQALIDNVDQIRVSRDLVKL 251
>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
Length = 872
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD GG R + P YKA+R L R DV N+P
Sbjct: 56 VAVVFDS-GGNNFRHHIYPEYKANRPPPPEDLVVQLPLVR-----------DVASNLNLP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ G+EADD+IAT + G VV S DKD QL+SE++++ PL + + T
Sbjct: 104 ILEKNGYEADDIIATFAAKTAALGEDVVVISSDKDLLQLMSENIKIYDPL----KGKYIT 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ + + GD D +PG VP G KTA L+ + GS+EN+ N+
Sbjct: 160 EDDIVKKFGTTSDKLREVMALTGDRSDNIPG----VPSIGPKTASSLITQFGSIENIFNS 215
>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
33030]
gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
33030]
Length = 887
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 76 TKSKKRVFFLDVNPLCY-------------EGSRPSLQSFGRWLSLFFDQVSHADPVIAV 122
T +KKR+ +D + + + G + + +G +LS+F + +S P A
Sbjct: 2 TANKKRLLLIDGHSMAFRAFYALPAENFSTSGGQNTNAVYG-FLSMFANILSEEQPTHAA 60
Query: 123 --FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
FD G R + P YKA R A + F +G+V I DVLG + +
Sbjct: 61 VAFD-VGRKTFRTEKFPEYKAQRE------AAPEEF-KGQV----PIIQDVLGSLGIVTL 108
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
+ +EADD++ATL Q Q Y V+ + D+D+ QL+++DV ++ P + + + +T +
Sbjct: 109 TKDNYEADDILATLTTQA-QDEYEVVIVTGDRDYIQLVNDDVTVLYPTRGVSTLTRFTPE 167
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAA 299
+Y P + GD D +P I PG G KTA K + ++G LE L+ NA
Sbjct: 168 EVENKYGLTPAQYPDFAALRGDPSDNLPNI----PGVGEKTATKWIVENGDLEALIANAD 223
Query: 300 AVRTVGRDYAQE 311
+++ D +E
Sbjct: 224 SIKGKAGDAFRE 235
>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
Length = 950
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ ++ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLIAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q + G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAAKDGKDVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL++E + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNEHIMLINTMTNTLLDR------EGVIEKYGIPPELIIDYLALRGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GS++ +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSIQTI 214
>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y I
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
Length = 849
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD +G R+ YKA+R+ L + R ++L N
Sbjct: 50 DYVAVAFDKKGRA-VRKSEYEEYKANRKPMPDSLQVQIPYVR-----------EILAALN 97
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS- 235
+PV+K EG+EADDVI TLV + + V+ + D+D QL+ ++V + + DR +
Sbjct: 98 IPVLKCEGYEADDVIGTLVNRFKAQDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTE 157
Query: 236 -FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
YT+++ +Y H + + +VGD D +PG++ G G KTA+KLL+++ +LEN
Sbjct: 158 DLYTVENVKEKYGVFAHQVVDYKALVGDASDNIPGVK----GIGDKTAIKLLEEYQTLEN 213
Query: 295 L 295
+
Sbjct: 214 I 214
>gi|387819294|ref|YP_005679641.1| DNA polymerase I [Clostridium botulinum H04402 065]
gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y I
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella novicida U112]
gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella novicida FTE]
gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
Length = 897
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++GY+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + +VGD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQIIDYLALVGDTSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGAHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
Length = 897
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
HA +A+ G R + P YKA+R + L ASQ + DV
Sbjct: 48 HAPTHVALVLDAGRRSFRHDIDPEYKANRPEAPDDL-ASQ----------FPLVRDVARA 96
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
NVPV++ G EADD+IATL G+ G+ VV + DKDF QL+ + L P+ +
Sbjct: 97 LNVPVIEEPGFEADDIIATLAGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGR 156
Query: 235 SFYTLKHYIA-QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+T + + P + + I+GD +D VPGI G G TA L++ G+ E
Sbjct: 157 GGWTGPAEVEKKMGVRPEQVVEYQSILGDKIDNVPGIA----GVGEVTAAALIRHFGTAE 212
Query: 294 NLL----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L A + G + ++ + +A+ +R N ++ALRR
Sbjct: 213 AMLARPGEIPAAVSRGGEKLRDKVVANAERIRTNRRLVALRR 254
>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
Length = 865
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 20/207 (9%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
H P +A G HR Q YKA+R + L F R VL
Sbjct: 59 HDPPYVAAIFESGEATHRVQEFAEYKANRTETPPDLLDQIPFVR-----------RVLEA 107
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+P+++ G EADDVI T+ + +G V+ S DKD QL++E V ++ P +D +
Sbjct: 108 MRIPILEYPGFEADDVIGTITRRAEAEGLDVVIVSSDKDMLQLVTEHVSMLNPAKDDKLY 167
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ +K ++ P L ++GD VD +PG PG G K A ++L+K GS+E
Sbjct: 168 NPEEVKTFM---GVPPVQVADLLALMGDSVDNIPG----APGIGDKGAKQILEKFGSIEA 220
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLR 321
L AA V R +E+L + D +R
Sbjct: 221 ALERAA--EVERKVYRESLQNNVDRIR 245
>gi|336407634|ref|ZP_08588130.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
gi|335944713|gb|EGN06530.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
Length = 964
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 34/261 (13%)
Query: 54 FDRTVGRQLLGKADFCGNGLEKTKS---KKRVFFLDVNPLCYEG-----SRPSLQSFGRW 105
F+ + + FC ++K K+ ++F LD L Y P + S G
Sbjct: 5 FEHKSNNKTVNTVFFCTFTMKKLKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFN 64
Query: 106 LSLFFDQVSHADPVI---------AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRF 156
S V+ + V+ FD G T R + YKA R +
Sbjct: 65 TSAILGFVNTLEEVLKKENPTHIGVAFDPPGPT-FRHEAFEQYKAQREE----------- 112
Query: 157 SRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQ 216
+ + S I D++ +P++++ G+EADDVI TL + +G + +PDKD+ Q
Sbjct: 113 TPEAIRLSVPIIKDIIKAYRIPILEVAGYEADDVIGTLATEAGNQGITTYMMTPDKDYGQ 172
Query: 217 LISEDVQLVMPLQDLDRWSFYTLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVP 275
L+++ V + P + ++ A+++ P + + ++GD D +PG P
Sbjct: 173 LVTDHVFMYRPKYGDKEFEVMGVEQVKAKFDIQSPAQVIDMLGLMGDSSDNIPG----CP 228
Query: 276 GFGRKTALKLLKKHGSLENLL 296
G G KTA KL+ + GS+ENLL
Sbjct: 229 GVGEKTAQKLIAEFGSIENLL 249
>gi|387770848|ref|ZP_10127021.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
gi|386903269|gb|EIJ68085.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
Length = 956
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G +++ ++ P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNSLGEPTGAMYG-VMNMLKSLIAQVQPTHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I LG +P++ IEG EADDVI TL Q Q G + +
Sbjct: 85 PDEL-------RKQIQPLHHMI-KALG---IPLLSIEGVEADDVIGTLATQASQAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ ++V L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNVMLINTMNNSLLDR------EGVIEKYGIPPELIIDYLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMTEI 214
>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
Length = 830
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 32/254 (12%)
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYK 140
R FF + L P +G SL + I VFD + + R + +YK
Sbjct: 22 RTFF-ALKGLTTSRGEPVQAVYGFAKSLLKALKEDGEVAIVVFDAKAPS-FRHEAYEAYK 79
Query: 141 AHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
A R F RQL + ++D+LG + ++ G EADDV+ATL
Sbjct: 80 AGRAPTPEDFPRQLALIKE------------LVDLLGLVRL---EVPGFEADDVLATLAK 124
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
+ ++GY + S D+D QL+S+ + L+ P ++ T +Y P +
Sbjct: 125 KAEREGYEVRILSADRDLYQLLSDRIHLLHPEGEV-----LTPGWLQERYGLSPERWVEY 179
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKH 316
R +VGD D +PG VPG G KTALKLLK+ GSLE +L + V + +EA+ +
Sbjct: 180 RALVGDPSDNLPG----VPGIGEKTALKLLKEWGSLEAILK--NLDQVKPERVREAIRNN 233
Query: 317 ADYLRRNYEVLALR 330
D L+ + E+ LR
Sbjct: 234 LDKLQMSLELSRLR 247
>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
Length = 893
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 121/269 (44%), Gaps = 46/269 (17%)
Query: 81 RVFFLDVNPLCY------------EGSRPSLQSFG--RWLSLFFDQ--VSHADPVIAVFD 124
R+F D L Y P+ ++G R L F + D FD
Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVGKDYAAVAFD 62
Query: 125 GEGGTEHRRQLLPSYKAHRRK----FLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
T R +LL +YKA R K ++QL +R +++ LG + V+
Sbjct: 63 KRAAT-FRHKLLETYKAQRPKTPDLLIQQLPYIKR------------LVEALG---MKVL 106
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
+IEG+EADD+IATL + L + + DKD QL++E +++ ++ + Y +
Sbjct: 107 EIEGYEADDIIATLAVKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQ 166
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN--- 297
+Y +PH L + GD++D +PG V G G KTA++LL+K+ LE++LN
Sbjct: 167 KVKEKYGVEPHQIPDLLALTGDEIDNIPG----VTGIGEKTAVQLLEKYRDLEDILNHIH 222
Query: 298 ---AAAVRTVGRDYAQEALTKHADYLRRN 323
+T+ RD L+K L N
Sbjct: 223 ELPQKTRKTMLRDRESAILSKKLAILETN 251
>gi|383482671|ref|YP_005391585.1| DNA polymerase I [Rickettsia montanensis str. OSU 85-930]
gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
gi|378935025|gb|AFC73526.1| DNA polymerase I [Rickettsia montanensis str. OSU 85-930]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL+++++++ PL + + T + ++ + + ++GD D
Sbjct: 132 IISSDKDLLQLMTKNIKIYDPL----KGKYITEDDVVTKFGTTSNKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|374319750|ref|YP_005066249.1| DNA polymerase I [Rickettsia slovaca 13-B]
gi|383751824|ref|YP_005426925.1| DNA polymerase I [Rickettsia slovaca str. D-CWPP]
gi|360042299|gb|AEV92681.1| DNA polymerase I [Rickettsia slovaca 13-B]
gi|379774838|gb|AFD20194.1| DNA polymerase I [Rickettsia slovaca str. D-CWPP]
Length = 875
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
Length = 901
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V FD G T R + LPSYK R A+ +G+V I +VL +V
Sbjct: 67 VAVAFDA-GSTTFRTEALPSYKGTR-------DATPEPFKGQV----PLIKEVLEAMHVR 114
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ + EADD++ATL Q G +V S D+D Q ++E+V ++ P++ + + T
Sbjct: 115 HLDKDNFEADDILATLSSQADALGMEVLVCSGDRDSLQFVNENVTVLYPVKGVSELARMT 174
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y +PH L +VG+ D +PG VPG G KTA K + + GSLE +L+
Sbjct: 175 PDAVRTKYGVEPHQYPELAALVGETSDNLPG----VPGVGPKTAAKWINQFGSLEQILDR 230
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEV 326
A G+ A E+L H D +R N ++
Sbjct: 231 AG-EIKGK--AGESLRDHLDVVRLNRQL 255
>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Cupriavidus metallidurans CH34]
Length = 934
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 29/215 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R + P+YK HR L + + I + + P
Sbjct: 57 IACVFDAKGKT-FRDDMYPAYKEHRPSMPEDLA-----------KQIEPIHEAVRALGWP 104
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSF 236
+V +EG EADDVI TL Q Q+G VV++ DKD QL+++ V LV M + LD
Sbjct: 105 IVVVEGVEADDVIGTLALQASQQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDP--- 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+A++ P + ++GD VD VPG VP G KTA+K L ++G+L++++
Sbjct: 162 ---PGVVAKFGVPPERIVDYLSLIGDAVDNVPG----VPKVGPKTAVKWLTEYGTLDDIM 214
Query: 297 -NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NA ++ V E L ++L R E++ ++
Sbjct: 215 GNAEKIKGV----VGENLRNTLEWLPRARELVTVK 245
>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
Length = 950
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 45 PLTNSNGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 102
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q Q G + +
Sbjct: 103 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGVEADDVIGTLARQASQNGQKVL 151
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 152 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 205
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL+LL+ GS+ +
Sbjct: 206 DNIPG----VSGVGEKTALRLLQGIGSMAQI 232
>gi|410943843|ref|ZP_11375584.1| DNA polymerase I [Gluconobacter frateurii NBRC 101659]
Length = 930
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 20/178 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD G R + P YKAHR + L R + G I D NVP ++
Sbjct: 60 IFDA-GRQTFRNDIYPQYKAHRPEPPEDL-------RPQFG----LIRDATAAFNVPAIE 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G EADD+IA+ V+ +G R + S DKD QLI V+L+ P+ +
Sbjct: 108 LAGWEADDLIASYAKAVVAQGGRCTIISSDKDLMQLICPGVELMDPM----KQKPIREAE 163
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
A++ P + ++ ++GD D VPG VPG G K A +L+ ++G+LE +L+AA
Sbjct: 164 VEAKFGVRPDQVVDVQALMGDSTDNVPG----VPGIGAKGAAQLINEYGTLEKVLDAA 217
>gi|3041672|sp|P52026.2|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
Length = 876
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 ILVAFDA-GKTTFRHETFQDYKGGRQQTPPEL-------------SEQFPLLRELLKAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I T+ + ++G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELDHYEADDIIGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIES 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 160 YTPETVVEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
A++ + + +E L ++ D
Sbjct: 216 --ASIDEIKGEKLKENLRQYRD 235
>gi|374996095|ref|YP_004971594.1| DNA polymerase I [Desulfosporosinus orientis DSM 765]
gi|357214461|gb|AET69079.1| DNA polymerase I [Desulfosporosinus orientis DSM 765]
Length = 874
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 19/236 (8%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
F + PL RP+ G LF +Q D + FD T R + YKA
Sbjct: 17 FYALPPLTTADGRPTNVLHGFLTMLFKLEQEQQPDYWVVAFDKTKAT-VRIEQYAGYKAQ 75
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R++ L ++ ++L + +VP++++ G+EADD+IA + Q +G
Sbjct: 76 RKETPEGLRPQ-----------FDYLKEILTEMDVPILELAGYEADDLIAAITKQAEAQG 124
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
+ + DKD QLIS + + + + Y +Y P + L+ ++GD
Sbjct: 125 MEIQIYTGDKDALQLISPKTNVYLTKKGISEVERYDETALWERYQLRPLQIIDLKGLMGD 184
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
D +PG VPG G KTALKLL + GS+E++L A V V Q L ++AD
Sbjct: 185 TSDNIPG----VPGIGEKTALKLLWEFGSVEDVL--ANVEKVSGKKVQGNLKEYAD 234
>gi|409393067|ref|ZP_11244566.1| DNA polymerase I [Gordonia rubripertincta NBRC 101908]
gi|403197165|dbj|GAB87800.1| DNA polymerase I [Gordonia rubripertincta NBRC 101908]
Length = 915
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 26/205 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG V
Sbjct: 75 IAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---VT 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG EADD+IATL Q ++G++ ++ + D+D QL+ ++ P + + + +T
Sbjct: 123 VMAIEGFEADDIIATLATQAREQGFKVLIVTGDRDSLQLVDPSTTVLYPRKGVSDLTRFT 182
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L+
Sbjct: 183 PEEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLV-- 236
Query: 299 AAVRTVGRDYAQEALTKHADYLRRN 323
D+ E K D LR N
Sbjct: 237 --------DHVDEVRGKVGDALRAN 253
>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
Length = 922
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R + YKA R L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDMYSEYKAQRPPMPDDL-------RSQIEPLHR-IIHA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARQASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPDEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLLNAAA-VRTVGRDYAQEALTK---HADYLRRNYEVLALR 330
+ NLL A V +G A+ K +AD LR +YE+ ++
Sbjct: 211 VANLLAAPEKVSDLGFRGAKTMAAKIIENADMLRLSYELATIK 253
>gi|425065931|ref|ZP_18469051.1| DNA polymerase I [Pasteurella multocida subsp. gallicida P1059]
gi|404383426|gb|EJZ79880.1| DNA polymerase I [Pasteurella multocida subsp. gallicida P1059]
Length = 930
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAMQASRTGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
Length = 876
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 ILVAFDA-GKTTFRHETFQDYKGGRQQTPPEL-------------SEQFPLLRELLKAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I T+ + ++G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELDHYEADDIIGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIES 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 160 YTPETVVEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
A++ + + +E L ++ D
Sbjct: 216 --ASIDEIKGEKLKENLRQYRD 235
>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
Length = 878
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 MLVAFDA-GKTTFRHKTFTEYKGGRQQTPPEL-------------SEQFPLLRELLQAYQ 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++E +EADD+I TL + ++G+ + S D+D QL S+ V + + + +
Sbjct: 102 ICSYELENYEADDIIGTLSAKAEKEGFEVKIISGDRDLTQLASDHVTVDITKKGITDVES 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ GS+EN+L
Sbjct: 162 YTPETVREKYGLTPEQIIDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGSVENIL 217
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
A++ + + +E L K+ D
Sbjct: 218 --ASIEQINGNKLKENLEKYRD 237
>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
Length = 892
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 29/226 (12%)
Query: 101 SFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGR 160
SF R L + ++ + FD +G T R ++ YKA+R + + R
Sbjct: 39 SFTRMLMKLMKE-KESEYAVVFFDAKGPT-FRHEIDREYKANRPPMAEDMAVQIPYIR-- 94
Query: 161 VGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
++ N+P+V+ +G+EADD+I TL + ++G+ V+ S DKDF Q++++
Sbjct: 95 ---------KIVEGFNLPIVEQQGYEADDMIGTLAVKAEKEGFDTVIVSGDKDFAQMVTD 145
Query: 221 DVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFG 278
V + P+++ +DR + ++ P + + GD D + G VPG G
Sbjct: 146 HVTIWDPMKEIVIDRAAVEK------KFGIQPAQVIDAMALSGDTSDNIKG----VPGIG 195
Query: 279 RKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD--YLRR 322
KTAL L+++ GSL+NL + V T+ + +E L H D YL R
Sbjct: 196 EKTALALIQEFGSLDNLYD--RVETITKKKQKENLLAHRDDAYLAR 239
>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
Length = 877
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 56 LLVAFDA-GKTTFRHETFQEYKGGRQQTPPEL-------------SEQFPLLRELLKTYR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++ +EADD+I TL + Q+G+ + S D+D QL S V + + + +
Sbjct: 102 IPAYELYIYEADDIIGTLAARAEQEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEP 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 162 YTPETVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 217
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
A++ V + +E L +H D
Sbjct: 218 --ASIDEVKGEKVKEKLRQHRD 237
>gi|452965385|gb|EME70409.1| DNA polymerase I, partial [Magnetospirillum sp. SO-1]
Length = 753
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 26/219 (11%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DV 171
S +D V +FD T R + P YKAHR L QF L D
Sbjct: 51 SQSDHVAVIFDSSRQT-FRSDIYPEYKAHRPPAPEDLVP-------------QFPLVRDA 96
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
++P +++EG EADD+IAT ++ G R + S DKD QL+ + V++ P+++
Sbjct: 97 TRAFDLPAIELEGFEADDLIATYARLAVEAGARVTIVSSDKDLMQLVGDRVEMYDPMKN- 155
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
++ PH + ++ + GD D VPG VPG G KTA +L++++G
Sbjct: 156 ---RAIGEAEVREKFGVPPHKVVDVQALCGDSSDNVPG----VPGIGVKTAAQLIEEYGD 208
Query: 292 LENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ LL A + + +E L +A+ R + +++ LR
Sbjct: 209 LDTLLARAG--EIKQPKRRETLIANAELARISRQLVRLR 245
>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
Length = 922
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R L YKAHR L R ++ H+ I+
Sbjct: 54 QPSH---IAVVFDAKGKT-FRNDLYQEYKAHRPPMPDDL-------RSQIEPLHR-IIRA 101
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ + ++ ++++ DKD QL+ E++ L+ + D
Sbjct: 102 LG---LPLISIPGVEADDVIGTIARRASRENRAVLISTGDKDMAQLVDENITLINTMTD- 157
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ + A+Y P + ++GD D +PG+ PG G KTAL +L GS
Sbjct: 158 ---TIMGPEEVAAKYGVGPDRIIDFLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 210
Query: 292 LENLL----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ NLL + + G + +AD LR +YE+ ++
Sbjct: 211 VANLLAEPEKVSELAFRGSKTMAAKIIDNADMLRLSYELATIK 253
>gi|449145679|ref|ZP_21776481.1| DNA polymerase I [Vibrio mimicus CAIM 602]
gi|449078712|gb|EMB49644.1| DNA polymerase I [Vibrio mimicus CAIM 602]
Length = 938
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 55 SDRIAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 213 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 253
>gi|384176498|ref|YP_005557883.1| DNA polymerase I superfamily [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595722|gb|AEP91909.1| DNA polymerase I superfamily [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 880
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
15579]
gi|187772030|gb|EDU35832.1| DNA-directed DNA polymerase [Clostridium sporogenes ATCC 15579]
Length = 875
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D ++A FD + T R + YKA R+K +L +Q+F + ++L
Sbjct: 53 DYIVAAFDRKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALA 100
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ + +I+G EADD+I TL +KG + + DKD QL +++V++V+ + +
Sbjct: 101 ISIFEIDGFEADDLIGTLSVFAEKKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEI 160
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y I ++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 161 YDKNRMIEEFGVTPKEFIDVKGLMGDSSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
Query: 297 -NAAAVR 302
N +R
Sbjct: 217 ENIENIR 223
>gi|418031906|ref|ZP_12670389.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351470769|gb|EHA30890.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 880
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|430756264|ref|YP_007208586.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430020784|gb|AGA21390.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|374851354|dbj|BAL54316.1| DNA polymerase I [uncultured Aquificae bacterium]
Length = 289
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 8/129 (6%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
I ++L +PV+++ G+EADDVI + + L G+ + SPDKD QL+S+ VQ++ P
Sbjct: 90 IKELLKLLGIPVIEVAGYEADDVIGYITERALSFGFLVKIYSPDKDILQLVSQKVQVINP 149
Query: 228 LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLK 287
+ + +K ++ PH L +VGD D + G++ G G+KTA+K+L+
Sbjct: 150 IS----GEVFDIKKVEEKFGVKPHLIPHLLALVGDQTDNIEGVK----GIGKKTAIKVLE 201
Query: 288 KHGSLENLL 296
K+GS+EN+L
Sbjct: 202 KYGSIENIL 210
>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|428168845|gb|EKX37785.1| hypothetical protein GUITHDRAFT_165393 [Guillardia theta CCMP2712]
Length = 1263
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 125/261 (47%), Gaps = 35/261 (13%)
Query: 84 FLDVNPLCYEGSRPSLQSFG--RWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKA 141
F V L +P+ FG R L ++ +IAVFD + R + PSYK
Sbjct: 50 FYGVTALSRSDGQPTNAVFGFCRMLQHVTMKMFPNAQIIAVFDHPEAS-FRSTIWPSYKG 108
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
+R + ++L + + + ++PVV++EG EADD+IATL ++
Sbjct: 109 NRPEVPQELKSQ-----------FDIVKEAAISFDIPVVEVEGFEADDIIATLAARLADL 157
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCI 259
+ V S DKD QL+++ V + P + +DR + I ++ P + ++ +
Sbjct: 158 SHDVTVVSSDKDLYQLVTDKVGIWDPFKKIRIDR------EGVIQKFGVPPDKVVDVQSL 211
Query: 260 VGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT-VGRDYAQEALTKHAD 318
GD D +PGI PG G KTA KL+ + GSL+ +L + + + ++ +EA+ +A+
Sbjct: 212 AGDATDNIPGI----PGIGIKTAAKLVNEFGSLDAILERVFIASEIKQEKRKEAILSNAE 267
Query: 319 YL--------RRNYEVLALRR 331
L R E+++LR+
Sbjct: 268 SLGLKRRQAARVGRELVSLRK 288
>gi|12229815|sp|Q9S1G2.1|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
Length = 1016
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 84 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 131
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 132 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 187
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 188 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 243
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 244 IKQVKR---RETILANIDMARLSRDLVRLR 270
>gi|443632243|ref|ZP_21116423.1| DNA polymerase I [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443348358|gb|ELS62415.1| DNA polymerase I [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|387907082|ref|YP_006337417.1| DNA polymerase I [Blattabacterium sp. (Blaberus giganteus)]
gi|387581974|gb|AFJ90752.1| DNA polymerase I [Blattabacterium sp. (Blaberus giganteus)]
Length = 300
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 33/238 (13%)
Query: 78 SKKRVFFLDVNPLCYEGS-----RPSLQSFG-------RWLSLFFDQVSHADP--VIAVF 123
+ K++F +D PL Y+ P S G + + +++ P + +F
Sbjct: 3 NNKKLFLIDAYPLIYQSYYAYIRNPLFTSKGINTSPIINFTYFLMNTLNNEKPSYMATIF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI- 182
D GT R++ YKAHR+K + + + +I+ +L +
Sbjct: 63 DA--GTSFRKKEYEKYKAHRKK-----------TPEAIYMAIPYIIKILKTFKISFFYAP 109
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G+EADD I T+ KGY + + DKDF QLI+E++++ +P + ++
Sbjct: 110 KGYEADDFIGTIAKIAENKGYIIYIITLDKDFFQLITENIKVYIPPFKGNAKKILGIEEI 169
Query: 243 IAQYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ + P + L + GD D +PG+ PG G K A+K +KK+GS+E LLN+
Sbjct: 170 KEKFGVNHPKQVIDLWSMTGDPSDNIPGL----PGVGIKNAMKFIKKYGSIEKLLNST 223
>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
Length = 914
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R L YKA R L R + I + + P
Sbjct: 54 IACVFDAKGKT-FRDDLYAEYKAQRASMPEDL-----------ARQVEPIHEAVRAMGWP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSF 236
++ +EG EADDVI TL ++ G +AV+++ DKD QL+++DV L+ M + LDR
Sbjct: 102 LIMVEGVEADDVIGTLAVDAVRHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDR--- 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+A++ P + ++GD VD VPG+ V P KTA+K L ++G+L+ ++
Sbjct: 159 ---DGVLAKFGVPPERIVDYLTLIGDTVDNVPGVSKVGP----KTAVKWLTQYGTLDGIV 211
Query: 297 NAAA 300
AA
Sbjct: 212 ENAA 215
>gi|417851053|ref|ZP_12496845.1| DNA polymerase I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220123|gb|EGP05692.1| DNA polymerase I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
Length = 938
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 55 SDRIAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 213 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 253
>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
gi|399988152|ref|YP_006568502.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
gi|399232714|gb|AFP40207.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
Length = 908
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R+ P YK R +A+ RG++ + + VLG +
Sbjct: 73 IAAAFDVSRQT-FRKDKYPEYKEGR-------SATPDEFRGQIDITKE----VLGALGIT 120
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q Q+GYR +V + D+D QL+S+ V ++ P + + + +T
Sbjct: 121 VLAEPGFEADDIIATLATQAEQEGYRVLVVTGDRDSLQLVSDQVTVLYPRKGVSELTRFT 180
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ +Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N
Sbjct: 181 PDAVVEKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIVEYGSLQALVDN 236
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AV+ K D LR N + L R
Sbjct: 237 VDAVK-----------GKVGDALRANLSSVILNR 259
>gi|378773780|ref|YP_005176023.1| DNA polymerase I [Pasteurella multocida 36950]
gi|356596328|gb|AET15054.1| DNA polymerase I [Pasteurella multocida 36950]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRTGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
Length = 875
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL +P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKGKPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHHIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASSLNFPILEKNGYEADDIIATFATKTAALGEDVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + + ++GD D
Sbjct: 132 IISSDKDLLQLMNENIKIYDPL----KGKYSTEDDVVKKFGTTANKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSIENIFNS 215
>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
Length = 833
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +L + +++ N
Sbjct: 12 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEEL-----------AEQVDLLKEIIDGFN 59
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG +V + D+D QL+S+ V++ + + + +
Sbjct: 60 IKTLELEGYEADDLIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 119
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P+ + L+ ++GD D +PGI P G KTA+KLLK+ GS+ENLL
Sbjct: 120 FDEKAVLERYEITPYQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKEFGSVENLL 175
>gi|2506365|sp|P80194.2|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
polymerase 1
gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
Length = 834
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWQKYGLKPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>gi|449095353|ref|YP_007427844.1| DNA polymerase I [Bacillus subtilis XF-1]
gi|449029268|gb|AGE64507.1| DNA polymerase I [Bacillus subtilis XF-1]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
gi|402777064|ref|YP_006631008.1| DNA polymerase I [Bacillus subtilis QB928]
gi|452915628|ref|ZP_21964254.1| DNA polymerase I [Bacillus subtilis MB73/2]
gi|6015001|sp|O34996.1|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
gi|402482244|gb|AFQ58753.1| DNA polymerase I [Bacillus subtilis QB928]
gi|407960917|dbj|BAM54157.1| DNA polymerase I [Bacillus subtilis BEST7613]
gi|407965747|dbj|BAM58986.1| DNA polymerase I [Bacillus subtilis BEST7003]
gi|452115976|gb|EME06372.1| DNA polymerase I [Bacillus subtilis MB73/2]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|422015986|ref|ZP_16362576.1| DNA polymerase I [Providencia burhodogranariea DSM 19968]
gi|414095433|gb|EKT57095.1| DNA polymerase I [Providencia burhodogranariea DSM 19968]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYKPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + + +G +P++ + G EADDVI TL Q QKG +
Sbjct: 85 PDDL-------REQIAPLHEMV-EAMG---LPLLVVSGVEADDVIGTLARQASQKGIPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMNN----TILGPQEVEEKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VPG G KTAL LL+ GSLE + ++
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLEKIYDS 217
>gi|424897758|ref|ZP_18321332.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393181985|gb|EJC82024.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 1075
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 143 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 190
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 191 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 246
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 247 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 302
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 303 IKQVKR---RETILANIDMARLSRDLVRLR 329
>gi|374261140|ref|ZP_09619727.1| DNA polymerase I [Legionella drancourtii LLAP12]
gi|363538527|gb|EHL31934.1| DNA polymerase I [Legionella drancourtii LLAP12]
Length = 856
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 34/219 (15%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
H + VFD +G T R + P YKAHR ++L S +F Q ++ +L
Sbjct: 10 HPAEIAVVFDAKGKT-FRDEWYPEYKAHRPPMPQEL--SSQF---------QPLIQLLAI 57
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+P++ I+G EADDVI TL Q ++G V+++ DKD QL++E V L+ +
Sbjct: 58 MGLPLLIIDGVEADDVIGTLARQATEQGIPVVISTGDKDMAQLVNEHVTLI------NTM 111
Query: 235 SFYTL--KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
S YT+ ++ +P + +VGD D +PG+ G KTA+K L ++ +L
Sbjct: 112 SNYTMDVAGVKEKFGVEPAQIIDYLTLVGDTSDNIPGVSKC----GPKTAVKWLSEYQTL 167
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+NLL ++ E K +YLR + L L +
Sbjct: 168 DNLLA----------HSHEITGKIGEYLRASIPQLPLSK 196
>gi|428280385|ref|YP_005562120.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|441210775|ref|ZP_20974773.1| DNA-directed DNA polymerase I [Mycobacterium smegmatis MKD8]
gi|440626705|gb|ELQ88533.1| DNA-directed DNA polymerase I [Mycobacterium smegmatis MKD8]
Length = 908
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 28/214 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R+ P YK R +A+ RG++ + + VLG +
Sbjct: 73 IAAAFDVSRQT-FRKDKYPEYKEGR-------SATPDEFRGQIDITKE----VLGALGIT 120
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q Q+GYR +V + D+D QL+S+ V ++ P + + + +T
Sbjct: 121 VLAEPGFEADDIIATLATQAEQEGYRVLVVTGDRDSLQLVSDQVTVLYPRKGVSELTRFT 180
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ +Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N
Sbjct: 181 PDAVVEKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIVEYGSLQALVDN 236
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AV+ K D LR N + L R
Sbjct: 237 VDAVK-----------GKVGDALRANLSSVILNR 259
>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
Length = 934
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYTPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + +P++ I G EADDVI TL + KG +
Sbjct: 85 PDDL-------RAQIEPLHEMV----AAMGLPLLVIPGVEADDVIGTLAREASSKGMPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + + A+Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMTN----TILGPEEVEAKYGVPPSLIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRTVG 305
+PG VPG G KTAL LL+ GSLE++ N A+ +G
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLEDIYKNLEAIAPLG 225
>gi|421263814|ref|ZP_15714835.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401689101|gb|EJS84601.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRTGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 686
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANDGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
7454]
gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
7454]
Length = 681
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+L+++F V P ++ FD + T R + YKA+R K +L
Sbjct: 38 FLTMYFRAVEEYKPDYILVAFDKKTKT-FRHKEFEDYKANRDKAPSEL------------ 84
Query: 163 RSHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
++QF + D+L NV + I+G EADD++ T +G V+ + DKD+ QL+++
Sbjct: 85 -NYQFGILKDILDSLNVKYLDIDGFEADDIVGTYSKIARDEGLETVIITGDKDYFQLVND 143
Query: 221 DVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
DV + + + + + T + Y P + ++ ++GD D +PG V G G K
Sbjct: 144 DVIVYLTRKGISQMEEITEEKIKEDYGLSPKQLIDVKGLMGDKSDNIPG----VDGIGEK 199
Query: 281 TALKLLKKHGSLENL 295
TALK +KK+GS+E L
Sbjct: 200 TALKYIKKYGSMEAL 214
>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
Length = 934
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 23/211 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYSPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + + +G +P++ + G EADDVI TL + KG +
Sbjct: 85 PDDL-------RAQIAPLHEMV-EAMG---LPLLVVPGVEADDVIGTLAREASSKGMPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + + A+Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMTN----TILGPEEVEAKYGVPPSLIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+PG VPG G KTAL LL+ GSLE + N
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLEAIYN 216
>gi|384085835|ref|ZP_09997010.1| DNA polymerase I [Acidithiobacillus thiooxidans ATCC 19377]
Length = 907
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D +I VFD GGT R +L P YKA R L R ++ H++I
Sbjct: 52 SDEIIVVFDAPGGT-FRDRLYPEYKAQRPAMPEDL-------RAQIPLLHEWI----QAT 99
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
+P+V + EADDVI TL G Q G + V+ + DKD QL+++ V L+ ++ +
Sbjct: 100 GLPLVLVPDVEADDVIGTLAGSA-QSGQQVVIVTGDKDMAQLVNDQVTLLDTMKGVKT-- 156
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +Y P L + GD D +PG VPG G KTA K ++++GSL+ +
Sbjct: 157 --DVAGVWERYGVAPEHIADLLALTGDKADNIPG----VPGAGPKTAAKWIQQYGSLDGV 210
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L A +G EAL DYL + ++ +R
Sbjct: 211 L--AHADEIGGKIG-EALRASLDYLPLSLDLATIR 242
>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
Length = 960
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 76 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 123
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 124 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQ-- 181
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 182 ----AKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 233
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 234 GEIKGV----VGENLRNTLDWLPKGRELLTVK 261
>gi|422020130|ref|ZP_16366670.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
gi|414101725|gb|EKT63322.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
Length = 934
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYTPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + +P++ I G EADDVI TL + KG +
Sbjct: 85 PDDL-------RAQIEPLHEMV----AAMGLPLLVIPGVEADDVIGTLAREASSKGMPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + + A+Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMTN----TILGPEEVEAKYGVPPSLIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRTVG 305
+PG VPG G KTAL LL+ GSLE++ N A+ +G
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLEDIYKNLEAIAPLG 225
>gi|425063764|ref|ZP_18466889.1| DNA polymerase I [Pasteurella multocida subsp. gallicida X73]
gi|404382318|gb|EJZ78779.1| DNA polymerase I [Pasteurella multocida subsp. gallicida X73]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|398311771|ref|ZP_10515245.1| DNA polymerase I [Bacillus mojavensis RO-H-1]
Length = 880
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL ++G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKEGFEVKVFSGDKDLTQLATDQTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVQEKYGLTPDQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFHSVEKLLES 219
>gi|417853762|ref|ZP_12499110.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219066|gb|EGP04780.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|386332868|ref|YP_006029037.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
gi|334195316|gb|AEG68501.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
Length = 944
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQ-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 166 ----AKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLDWLPKGRELLTVK 245
>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
Length = 877
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F +I ++L +
Sbjct: 55 LLVAFDA-GKTTFRHKTFSEYKGGRQKTPPEL--SEQFP---------YIRELLDAYGIS 102
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + GY V S DKD QL S+ V + + + + YT
Sbjct: 103 RYELENYEADDIIGTLSLHAEKDGYEVKVISGDKDLTQLSSDAVTVSITRKGITDIEEYT 162
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
H +Y + ++ ++GD D +PG VPG G KTALKLLK+ G+LE LL++
Sbjct: 163 PAHIEEKYGITADRIIDMKGLMGDSSDNIPG----VPGVGEKTALKLLKEFGTLEELLDS 218
>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
Length = 916
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 32/191 (16%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
HAD VFD +G T R ++ P YKAHR +L ++ L
Sbjct: 49 HADYSACVFDAKGKT-FRDEIYPEYKAHRPSMPMELAVQ---------------IEPLHA 92
Query: 175 C----NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
C P++ I+G EADDVI TL Q ++ R ++++ DKD QL+ + LV + +
Sbjct: 93 CIRAMGWPMLIIDGVEADDVIGTLARQAVEADMRCIISTGDKDIAQLVDSHISLVNTMSN 152
Query: 231 --LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
LD S +A++ P L +VGD D VPG+ V P KTA+K L +
Sbjct: 153 EILDEASV------LAKFGVPPERMLDYLMLVGDTSDNVPGVHKVGP----KTAVKWLTQ 202
Query: 289 HGSLENLLNAA 299
+GSL+N++ A
Sbjct: 203 YGSLDNIIAHA 213
>gi|404497831|ref|YP_006721937.1| DNA polymerase I [Geobacter metallireducens GS-15]
gi|418067867|ref|ZP_12705197.1| DNA polymerase I [Geobacter metallireducens RCH3]
gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
gi|373558046|gb|EHP84411.1| DNA polymerase I [Geobacter metallireducens RCH3]
Length = 892
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + VFD G T R L P YKA+R L I +++ N
Sbjct: 54 DHIAVVFD-VGRTTFRTDLYPDYKANRSAMPDDLVPQI-----------APIKEMVRAFN 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+PV+++ G+EADD+I T+ + ++G AVV + DKD Q++SE V L+ D +
Sbjct: 102 IPVLELAGYEADDIIGTIARECEERGMEAVVVTGDKDLMQIVSERVTLL----DTMKEKA 157
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ ++ P + + + GD D +PG VPG G KTA+KL+++ GSL+ LL
Sbjct: 158 SGIPDVQERFGVGPEGVIDILGLAGDTSDNIPG----VPGIGEKTAIKLIQEFGSLDTLL 213
Query: 297 NAAA 300
A
Sbjct: 214 ERAG 217
>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
Length = 944
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAVR----ALGWPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQ-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 166 ----AKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLDWLPKGRELLTVK 245
>gi|383309782|ref|YP_005362592.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. HN06]
gi|380871054|gb|AFF23421.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. HN06]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|421897737|ref|ZP_16328104.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
Length = 944
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQ-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 166 ----AKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 218 GEIKGV----VGENLRSTLDWLPKGRELLTVK 245
>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
Length = 875
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y +
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
Length = 481
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 NL 295
L
Sbjct: 213 AL 214
>gi|441514482|ref|ZP_20996300.1| DNA polymerase I [Gordonia amicalis NBRC 100051]
gi|441450695|dbj|GAC54261.1| DNA polymerase I [Gordonia amicalis NBRC 100051]
Length = 915
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG V
Sbjct: 75 IAAAFDVSRKT-FRSEMYPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---VT 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL Q ++G++ ++ + D+D QL+ ++ P + + + +T
Sbjct: 123 VMAIEGYEADDIIATLATQAREQGFKVLIVTGDRDSLQLVDASTTVLYPRKGVSDLTRFT 182
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L++
Sbjct: 183 PEEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLVD 237
>gi|386833763|ref|YP_006239077.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. 3480]
gi|385200463|gb|AFI45318.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. 3480]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMNNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
Length = 893
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 40/237 (16%)
Query: 81 RVFFLDVNPLCY------------EGSRPSLQSFG--RWLSLFFDQ--VSHADPVIAVFD 124
R+F D L Y P+ ++G R L F + D FD
Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVGKDYTAVAFD 62
Query: 125 GEGGTEHRRQLLPSYKAHRRK----FLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
T R +LL +YKA R K ++QL +R +++ LG + V+
Sbjct: 63 KRAAT-FRHKLLETYKAQRPKTPDLLIQQLPYIKR------------LVEALG---MKVL 106
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
+IEG+EADD+IATL + L + + DKD QL++E +++ ++ + Y +
Sbjct: 107 EIEGYEADDIIATLAVKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQ 166
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y +PH L + GD++D +PG V G G KTA++LL+K+ LE++LN
Sbjct: 167 KVKEKYGVEPHQIPDLLALTGDEIDNIPG----VTGIGEKTAVQLLEKYKDLEDILN 219
>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 957
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
Length = 946
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 62 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 109
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 110 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQ-- 167
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 168 ----AKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 219
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 220 GEIKGV----VGENLRNTLDWLPKGRELLTVK 247
>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
Length = 930
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PDEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASKAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNTLLDR------EGVIEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG VPG G KTAL LL+ G++ ++
Sbjct: 188 DNIPG----VPGVGEKTALSLLQGIGNMTDI 214
>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 942
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 29/218 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD +G T R ++ YKAHR L + + I ++
Sbjct: 52 ADHIACVFDAKGKT-FRDEMYSEYKAHRSPMPEDLV-----------KQIEPIHAMVKAL 99
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDR 233
PV+ + G EADDVI TL Q Q G+ ++++ DKD QL++ V L+ M + LD
Sbjct: 100 GWPVLMVGGVEADDVIGTLACQATQAGWETIISTDDKDLAQLVNSSVTLINTMTNEKLD- 158
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
++ ++ P + I+GD VD VPG VP G KTA K L + GSL+
Sbjct: 159 -----IEGVKEKFGVPPELIVDYLSIIGDAVDNVPG----VPKAGPKTANKWLAEFGSLD 209
Query: 294 NLL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL+ NA V+ V E L D+L + ++++ ++
Sbjct: 210 NLMANADQVKGV----VGENLRASLDWLPQAHQLITVK 243
>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
gi|198273174|gb|EDY97443.1| DNA-directed DNA polymerase [Bacteroides plebeius DSM 17135]
Length = 931
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVFDG 125
+++F LD L Y P + S G S V+ + V+ FD
Sbjct: 11 EKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLRKENPTHIGIAFDP 70
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + +YKA R + + + +S I D++ ++P+++I G+
Sbjct: 71 SGPT-FRHEAYEAYKAQREE-----------TPEAIRQSVPVIKDIIRAYHIPILEIAGY 118
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL + ++G + +PDKD+ QL+ E V + P + ++ A+
Sbjct: 119 EADDVIGTLATEAGKRGINTYMMTPDKDYGQLVGEHVFMYRPKYGDKDFEVMGVEEVKAK 178
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 179 FDIQSPLQVIDMLGLMGDTADNIPG----CPGVGEKTAQKLIAQFGSIENLL 226
>gi|190149819|ref|YP_001968344.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 957
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 872
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +L + +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEEL-----------AEQVDLLKEIIEGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++++EG+EADD+I T+ +K +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKILELEGYEADDIIGTISKLAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y PH + L+ ++GD D +PGI P G KTA+KLLK G++ENLL
Sbjct: 159 FDEKAVLERYEITPHQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKDFGTIENLL 214
>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
Length = 1014
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R +L P+YKAHR L +F+ I + + ++P ++
Sbjct: 95 IFDKSEVT-FRNKLYPAYKAHRPPAPDDLIP--QFA---------LIREAVKAFDLPCIE 142
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT V Q ++G A + S DKD QL+++ V + ++D +
Sbjct: 143 QGGFEADDLIATYVRQACERGATATIVSSDKDLMQLVTDCVTMFDTMKD----RRLGIAE 198
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + ++ + GD VD VPG VPG G KTA +L+ ++G LE LL A+
Sbjct: 199 VIEKFGVPPEKVVEVQALAGDSVDNVPG----VPGIGVKTAAQLITEYGDLETLLAQAS- 253
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +EAL ++A+ R + +++ L
Sbjct: 254 -EIKQPKRREALIENAEKARISRQLVLL 280
>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
Length = 897
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL + ++GY+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAKNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|340351566|ref|ZP_08674478.1| DNA-directed DNA polymerase I [Prevotella pallens ATCC 700821]
gi|339617850|gb|EGQ22463.1| DNA-directed DNA polymerase I [Prevotella pallens ATCC 700821]
Length = 950
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
G R + P YKA R + + + S +I +LG ++P+++++G EA
Sbjct: 92 GLTFRHEAYPEYKAQREE-----------TPEDIKLSVPYIKQILGAMHIPILQVDGFEA 140
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DD+I T+ Q +KG + +PDKD+ QLI E+V + P + + A+Y
Sbjct: 141 DDIIGTIATQAGKKGISTYMLTPDKDYGQLIQENVYMYRPRHG-GGYDIIGTQEVEAKYG 199
Query: 248 C-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + L ++GD D PG PG G KTA KL+ + GS++N+L
Sbjct: 200 IPTPAQVIDLLALMGDTADNFPG----CPGVGEKTAAKLINQFGSIDNML 245
>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
Length = 920
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 101/212 (47%), Gaps = 34/212 (16%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD +G T R + P YKA R L R ++ + + D + +P++
Sbjct: 59 IFDAKGKT-FRDDIFPEYKAQRPPMPDDL-------RAQI----EPLYDCIRALGLPLIS 106
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTL 239
I G EADDVI T + + G R +V++ DKD QL++E V L+ + D LDR
Sbjct: 107 ISGVEADDVIGTYCVEASRLGERVLVSTGDKDIAQLVNEHVTLINTMNDTLLDR------ 160
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
I ++ P + +VGD VD +PG VP G KTALK L +GSL+NL+
Sbjct: 161 DGVIEKFGLPPEQIVDYLTLVGDSVDNIPG----VPKCGPKTALKWLDDYGSLDNLIA-- 214
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K + LR + E + L R
Sbjct: 215 --------HADEIKGKVGENLRASLEQIPLSR 238
>gi|350267086|ref|YP_004878393.1| DNA polymerase I superfamily [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599973|gb|AEP87761.1| DNA polymerase I superfamily [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 880
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ + S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKIFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
Length = 954
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ ++ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKQGEPTGAMYG-VLNMLKSLIAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ IEG EADDVI TL Q Q G +
Sbjct: 85 PDEL-------RSQIQPLHA-IIKALG---IPLLSIEGVEADDVIGTLAVQASQAGKHVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALLGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
D +PG++ G G KTA+ LL+ GS++
Sbjct: 188 DNIPGVK----GVGEKTAIALLQGIGSMQ 212
>gi|343506692|ref|ZP_08744163.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
gi|342801915|gb|EGU37367.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
Length = 933
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVIFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ E+V L+ + + LDR
Sbjct: 103 GLPLISISGVEADDVIGTLAHQASQQGIPVLISTGDKDMAQLVDENVTLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ GS+E
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGSME 212
Query: 294 NL 295
L
Sbjct: 213 TL 214
>gi|334336973|ref|YP_004542125.1| DNA polymerase I [Isoptericola variabilis 225]
gi|334107341|gb|AEG44231.1| DNA polymerase I [Isoptericola variabilis 225]
Length = 904
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 28/253 (11%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPS 138
R FF L V +P+ +G + S+ + + +P +AV G R +LLPS
Sbjct: 24 RAFFALPVENFATHSGQPTNAVYG-FTSMLINLLRDEEPTHVAVAFDAGRQSFRTELLPS 82
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YK R +S +G+V I D+L +VP ++ EG+EADD+ ATL Q
Sbjct: 83 YKGTRE-------SSPEPFKGQV----PLIKDILAALHVPTLEREGYEADDIFATLATQA 131
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
G +V S D+D QL+S+DV ++ P + + + + +Y P L
Sbjct: 132 AAAGMEVLVCSGDRDAFQLVSDDVTVLYPKRGVSELTRMDRAAVVDKYGVPPEQYPDLAA 191
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
+VG+ D +PG V G G KTA K + +GSLE LL D+ E K A+
Sbjct: 192 LVGETSDNLPG----VAGVGPKTAAKWITTYGSLEGLL----------DHVDELKGKAAE 237
Query: 319 YLRRNYEVLALRR 331
LR E + + R
Sbjct: 238 NLRAAVEQVRVNR 250
>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
Length = 949
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVFDGE 126
+VF LD + Y P + S G S F V+ D +I VFD
Sbjct: 10 KVFLLDAYAIIYRSYYAFLKNPRINSKGVNTSAIFGFVNILDELIRNEKPEYIAIVFD-P 68
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
GG R + YKA R+K + + + +I ++ + + ++EG+E
Sbjct: 69 GGKTFRHETYEEYKAQRQK-----------TPEDIKNAIPYIKRIIEAYGIGIFEMEGYE 117
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ ++ +G+ + +PDKD+ QL+ ++ P + ++ A+Y
Sbjct: 118 ADDVIGTMAKRLQGEGFGVYMMTPDKDYAQLVDTNIFQYKPRYGSAGFDVLGVEEIKAKY 177
Query: 247 NCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
D P + L ++GD D +PG PG G KTA KL+K GS++NLL+
Sbjct: 178 GLDSPAQMIDLLGLMGDASDNIPG----CPGVGEKTATKLIKDFGSIDNLLH 225
>gi|418053084|ref|ZP_12691160.1| DNA polymerase I [Mycobacterium rhodesiae JS60]
gi|353179445|gb|EHB45005.1| DNA polymerase I [Mycobacterium rhodesiae JS60]
Length = 898
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 28/214 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA+R +A+ RG++ + + VL +
Sbjct: 63 VAAAFDVSRQT-FRSERYPEYKANR-------SATPDEFRGQIDITKE----VLVALGIT 110
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q Q+ YR +V + D+D QL+S DV ++ P + + + +T
Sbjct: 111 VLAEPGFEADDIIATLATQAEQEDYRVLVVTGDRDSLQLVSPDVTVLYPRKGVSDLTRFT 170
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N
Sbjct: 171 PEAVVEKYGLTPTQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIVEYGSLQGLVDN 226
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR K D LR N + L R
Sbjct: 227 VDAVR-----------GKVGDSLRANLSSVVLNR 249
>gi|347541478|ref|YP_004848904.1| DNA polymerase I [Pseudogulbenkiania sp. NH8B]
gi|345644657|dbj|BAK78490.1| DNA polymerase I [Pseudogulbenkiania sp. NH8B]
Length = 887
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P YKA+R +L ASQ + + DV+ P++
Sbjct: 20 VFDAKGKT-FRDELYPDYKANRPSMPEEL-ASQITA----------VHDVVQASGWPILV 67
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL Q G + +V++ DKD QL+S V LV M + LD
Sbjct: 68 VDGVEADDVIGTLTRQAEAAGMQVIVSTGDKDIAQLVSPVVTLVNTMTNETLDEGGVKE- 126
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
++ P+ + ++GD VD VPG+ P KTA+K L+++GSLE ++ NA
Sbjct: 127 -----KFGVPPNLIIDYLTLIGDKVDNVPGVDKCGP----KTAVKWLEQYGSLEAVMANA 177
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
AA+ D + AL D+L + E++ ++
Sbjct: 178 AAISGKVGDNLRAAL----DWLPKGRELITIK 205
>gi|421891276|ref|ZP_16322087.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
gi|378963385|emb|CCF98835.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
Length = 944
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQ-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 166 ----AKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLSEYGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLDWLPKGRELLTVK 245
>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
Length = 872
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +L + +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEEL-----------AEQVDLLKEIIEGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++++EG+EADD+I T+ +K +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKILELEGYEADDIIGTISKLAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y PH + L+ ++GD D +PGI P G KTA+KLLK G++ENLL
Sbjct: 159 FDEKAVLERYEITPHQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKDFGTIENLL 214
>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
Length = 872
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +L + +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEEL-----------AEQVDLLKEIIEGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++++EG+EADD+I T+ +K +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKILELEGYEADDIIGTISKLAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y PH + L+ ++GD D +PGI P G KTA+KLLK G++ENLL
Sbjct: 159 FDEKAVLERYEITPHQFIDLKGLMGDKSDNIPGI----PNIGEKTAIKLLKDFGTIENLL 214
>gi|421746990|ref|ZP_16184743.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
gi|409774428|gb|EKN56051.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
Length = 302
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R L P+YK HR L R + I + + P+V
Sbjct: 60 VFDAKGKT-FRDALYPAYKEHRPSMPDDL-----------ARQIEPIHEAVRALGWPIVV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI +L Q +G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGSLACQATAEGIRTVVSTGDKDLAQLVNDSVTLVNTMSGEVLDP------ 161
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+A++ P + ++GD VD VPG VP G KTA+K L ++G+L+ ++ NA
Sbjct: 162 PGVVAKFGVPPERIVDYLSLIGDAVDNVPG----VPKVGPKTAVKWLTEYGTLDGIMANA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L ++L R E++ ++
Sbjct: 218 DKIKGV----VGENLRNTLEWLPRARELVTVK 245
>gi|374581861|ref|ZP_09654955.1| DNA polymerase I [Desulfosporosinus youngiae DSM 17734]
gi|374417943|gb|EHQ90378.1| DNA polymerase I [Desulfosporosinus youngiae DSM 17734]
Length = 874
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 19/236 (8%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
F + PL RP+ G LF +Q H D + FD T R + YKA
Sbjct: 17 FYALPPLTTADGRPTNVLHGFLTMLFRLEQEQHPDYWVVAFDKTKAT-VRIEQYAGYKAQ 75
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R++ L ++ ++L + +VP++++ G+EADD+IA + Q +G
Sbjct: 76 RKETPEGLRPQ-----------FDYLKEILTEMDVPMLELAGYEADDLIAAITKQAEAQG 124
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
+ + DKD QLIS + + + + Y +Y PH + L+ ++GD
Sbjct: 125 MEIQIYTGDKDALQLISPRTTVFLTKKGISEVEPYDETALWERYQLRPHQIIDLKGLMGD 184
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
D +PG VPG G KTALKLL + ++E +L A V V Q L ++ D
Sbjct: 185 TSDNIPG----VPGIGEKTALKLLWEFETVEGVL--ANVDKVSGKKVQSNLKEYTD 234
>gi|430809178|ref|ZP_19436293.1| DNA polymerase I [Cupriavidus sp. HMR-1]
gi|429498322|gb|EKZ96832.1| DNA polymerase I [Cupriavidus sp. HMR-1]
Length = 934
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 29/215 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R + P+YK HR L + + I + + P
Sbjct: 57 IACVFDAKGKT-FRDDMYPAYKEHRPSMPEDL-----------AKQIEPIHEAVRALGWP 104
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSF 236
+V +EG EADDVI TL Q Q+G VV++ DKD QL+++ V LV M + LD
Sbjct: 105 IVVVEGVEADDVIGTLALQASQQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDP--- 161
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+A++ P + ++GD VD VPG VP G KTA+K L ++G+L+ ++
Sbjct: 162 ---PGVVAKFGVPPERIVDYLSLIGDAVDNVPG----VPKVGPKTAVKWLTEYGTLDEIM 214
Query: 297 -NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NA ++ V E L ++L R E++ ++
Sbjct: 215 GNAEKIKGV----VGENLRNTLEWLPRARELVTVK 245
>gi|407978365|ref|ZP_11159197.1| DNA polymerase I [Bacillus sp. HYC-10]
gi|407415133|gb|EKF36746.1| DNA polymerase I [Bacillus sp. HYC-10]
Length = 879
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L+ F R ++L V
Sbjct: 56 MLVAFDA-GKTTFRHETFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQVK 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ +EADD+I TL + + G+ + S DKD QL ++ + + + + +YT
Sbjct: 104 RYELPQYEADDIIGTLAVEAEKDGFEVKIFSGDKDLTQLSTDRTTVAITKKGITEVEYYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ G++ENLL
Sbjct: 164 PAHIEEKYGLRPDQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFGTVENLLE 218
>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
27678]
gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
gi|171278711|gb|EDT46372.1| DNA-directed DNA polymerase [Bifidobacterium dentium ATCC 27678]
gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
Length = 949
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 35/234 (14%)
Query: 102 FGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFS 157
F LS D H D + FD +GGT R +LP YK R L QL QR
Sbjct: 51 FATMLSQVID-TEHPDHLAVAFDVKGGT-FRNTMLPQYKGTRDAAPEDLLSQLPLIQR-- 106
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
+L LG V ++ G+E DDVI TL + GYR +V S D+D QL
Sbjct: 107 ----------MLSALG---VTYIEQPGYEGDDVIGTLATMGDKAGYRTLVLSGDRDAFQL 153
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
I++++ ++ P T + + +Y+ P L + G+ D +PG VPG
Sbjct: 154 INDNITVLYPGHHFKDLKHMTAEAVVEKYHVTPEQYPDLAALRGETADNIPG----VPGV 209
Query: 278 GRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
G A K + ++G L+ ++ ++A E K + LR N E + L R
Sbjct: 210 GDGFAAKWINQYGGLDQII----------EHADEITGKKGEALRENIEQVKLNR 253
>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
Length = 908
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P+ VFD +G T R + YKA+R L R +V H+ I +
Sbjct: 54 PIAVVFDAKGKT-FRDDMYKDYKANRPPMPDDL-------RSQVEPLHELIR----AMGL 101
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P++ +EG EADDVI TL + +KG VV++ DKD QL++E + LV + D +
Sbjct: 102 PLLIVEGVEADDVIGTLAREGTEKGLPVVVSTGDKDMAQLVNEHITLVNTMTD----TVM 157
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
++ A++ P + ++GD VD +PG VPG G KTAL LL+ G L ++
Sbjct: 158 DIEGVKAKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTALALLQNLGGLNDI 211
>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
Length = 954
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ ++ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKQGEPTGAMYG-VLNMLKSLIAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ IEG EADDVI TL Q Q G +
Sbjct: 85 PDEL-------RSQIQPLHA-IIKALG---IPLLSIEGVEADDVIGTLAVQASQAGKHVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALLGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
D +PG++ G G KTA+ LL+ GS++
Sbjct: 188 DNIPGVK----GVGEKTAIALLQGIGSMQ 212
>gi|429766177|ref|ZP_19298451.1| DNA-directed DNA polymerase [Clostridium celatum DSM 1785]
gi|429185157|gb|EKY26146.1| DNA-directed DNA polymerase [Clostridium celatum DSM 1785]
Length = 869
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 16/181 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D ++A FD + T R + YKA R+K +L G I ++L
Sbjct: 51 DYIVAAFDRKAPT-FRHKEYEDYKAGRKKMPPEL-----------GEQFPIIKELLNLLA 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
V + +I+G EADD+I TL G + + D+D QL S+++++V+ + + +
Sbjct: 99 VNIYEIDGFEADDIIGTLAKFAESHGIEVFIVTGDRDALQLASDNIKVVITKKGVTETAV 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y + + A++ P + ++ ++GD D +PG VPG G KTA KL++ +GS+E +L
Sbjct: 159 YNKEAFEAEFGVTPTQYIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIQTYGSMEGVL 214
Query: 297 N 297
+
Sbjct: 215 S 215
>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 930
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSLNEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEIFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PEEL-------RSQILPLHN-IIRALG---IPLLVVEGVEADDVIGTLAVQASRAGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ E++ L+ + + LDR + + +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDENIMLINTMTNTLLDR------EGVLEKYGLPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI PG G KTAL LL+ GS+ +
Sbjct: 188 DNIPGI----PGVGEKTALGLLQGIGSMAEI 214
>gi|407778269|ref|ZP_11125534.1| DNA polymerase I [Nitratireductor pacificus pht-3B]
gi|407299950|gb|EKF19077.1| DNA polymerase I [Nitratireductor pacificus pht-3B]
Length = 977
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R L P YKA+R + L I + ++P ++
Sbjct: 67 IFDHSSKT-FRNDLYPEYKANRSEPPEDLIPQ-----------FGLIREATRAFDLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G EADD+IAT + G + S DKD QL+ V + P++D + +
Sbjct: 115 LPGFEADDLIATYARLATEAGGETTIVSSDKDLMQLVDGSVSMYDPMKDRE----IRVPE 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + L+ + GD VD VPG VPG G KTA +LL+++G L+ LL A+
Sbjct: 171 VVEKWGVPPEKMIDLQALTGDSVDNVPG----VPGIGPKTAAQLLEEYGDLDTLLARAS- 225
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ ++ +E L + AD R + E++ LR
Sbjct: 226 -EIKQNKRRENLIEFADKARISRELVRLR 253
>gi|383501239|ref|YP_005414598.1| DNA polymerase I [Rickettsia australis str. Cutlack]
gi|378932250|gb|AFC70755.1| DNA polymerase I [Rickettsia australis str. Cutlack]
Length = 872
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPQGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGNNFRHHIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N+P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLVVQLPLVR-----------DVASNLNLPILEKNGYEADDIIATFAAKTAALGEDVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
V S DKD QL+SE++++ PL + + T + ++ + ++GD D
Sbjct: 132 VISSDKDLLQLMSENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+ N+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVANIFNS 215
>gi|423683390|ref|ZP_17658229.1| DNA polymerase I [Bacillus licheniformis WX-02]
gi|383440164|gb|EID47939.1| DNA polymerase I [Bacillus licheniformis WX-02]
Length = 879
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K++ +D N L Y + P L + +G + ++ + P ++ FD
Sbjct: 3 ERKKLVLVDGNSLAYRAFFALPLLSNEKGIHTNAVYG-FTTILMKMLEEEKPTHMLVAFD 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YK R+K +L+ F R ++L + ++E
Sbjct: 62 A-GKTTFRHKTFKEYKGGRQKTPPELSEQLPFIR-----------ELLDAYRISRYELEN 109
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL + G+ + S DKD QL +E + + + + +YT +H
Sbjct: 110 YEADDIIGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVRE 169
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + ++ ++GD D +PG VPG G KTA+KLLK+ ++E LL++
Sbjct: 170 KYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFHTVEELLSS 219
>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 957
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANDGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
Length = 871
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 32/253 (12%)
Query: 79 KKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFDG 125
++RV +D N L Y + P L++ +G +L++ +S P +I FD
Sbjct: 3 QERVMIIDGNSLLYRAFYALPLLRNRRGTFTNAVYG-FLNMLSKVLSEYQPSHIIVAFDK 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+ T R + YK HR +L R + G + +VL NV +++ G+
Sbjct: 62 DRKT-LRSEEYGEYKIHRPPAPPEL-------REQFG----ILREVLEALNVSYIEMSGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TL + ++G ++ + D+D QL+S +++++ + + Y L+ +
Sbjct: 110 EADDIIGTLSVRAGEQGLPCIIVTGDQDELQLVSPGIEVLVTKKGISEMERYDLQAVHGK 169
Query: 246 YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVG 305
+ P+ ++ ++GD D +PG VPG GRKTA+KL+K++GSLE + A + +
Sbjct: 170 WEVSPYQLPDVKGLMGDASDNIPG----VPGIGRKTAIKLVKQYGSLEGIY--ANLNEIT 223
Query: 306 RDYAQEALTKHAD 318
+E LT H D
Sbjct: 224 PVRLRELLTAHKD 236
>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
Length = 890
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 11 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 58
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 59 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 118
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 119 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 168
Query: 294 NL 295
L
Sbjct: 169 AL 170
>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
Length = 957
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 24/184 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R +L R ++ HQ V+
Sbjct: 81 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDEL-------RCQIEPLHQ----VIKAM 128
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q+G ++++ DKD QL+ +++ L+ + + +DR
Sbjct: 129 GLPLIAIEGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDR 188
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 189 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLS 238
Query: 294 NLLN 297
L +
Sbjct: 239 QLYD 242
>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 957
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIDKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
Length = 884
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +VP
Sbjct: 61 MLVAFDA-GKTTFRHKTFSEYKGGRQKTPPEL--SEQFP---------FIRELLDAFHVP 108
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S++ + +P + + YT
Sbjct: 109 RYELENYEADDIMGTLAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYT 168
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 169 TEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 219
>gi|345861587|ref|ZP_08813843.1| DNA polymerase I [Desulfosporosinus sp. OT]
gi|344325287|gb|EGW36809.1| DNA polymerase I [Desulfosporosinus sp. OT]
Length = 874
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 23/237 (9%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
F + PL RP+ G LF +Q H D + FD T Q YKA
Sbjct: 17 FYALPPLTTADGRPTNVLHGFLTMLFRLEQEQHPDSWVVAFDKTKATVRIEQY-AGYKAQ 75
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R++ L ++ +VL + +VPV+++ G+EADD+IA + Q +G
Sbjct: 76 RKETPEGLRPQ-----------FDYLKEVLTELDVPVLELAGYEADDLIAAITKQAETQG 124
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
+ + D+D QLIS + + + + Y +Y P+ + L+ ++GD
Sbjct: 125 MEIRIYTGDRDALQLISPKTNIYLTKKGISDVECYDEHALWERYQLRPYQIIDLKGLMGD 184
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA------AVRTVGRDYAQEAL 313
D +PG VPG G KTALKLL + ++E +L A +++ +D+A +AL
Sbjct: 185 TSDNIPG----VPGIGEKTALKLLWEFETVEGVLANADKVSGKKLQSNLKDFADQAL 237
>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
gi|227116440|ref|YP_002818336.1| DNA polymerase I [Vibrio cholerae O395]
gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
Length = 934
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 NL 295
L
Sbjct: 213 AL 214
>gi|406990297|gb|EKE09975.1| hypothetical protein ACD_16C00099G0033 [uncultured bacterium]
Length = 899
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 115/216 (53%), Gaps = 25/216 (11%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
+ D ++ +FD +R ++ P+YKA+R++ +L +FS I +
Sbjct: 53 NPDYLVVIFDA-ARENYRNKIYPAYKANRQETPPELIP--QFS---------LIREACKA 100
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+VP V+ EG+EADD+IAT Q G +V+S DKD QL+++ V ++ P+++
Sbjct: 101 FDVPYVEKEGYEADDLIATYAHS--QPGDVTIVSS-DKDLMQLVNKSVHMLDPIKN---- 153
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ ++ P+ + ++ + GD D VPG VPG G KTA +L++ +G+LEN
Sbjct: 154 RLIGAEEVREKFGVPPNQVIDVQALAGDPTDNVPG----VPGIGIKTAAELIQTYGNLEN 209
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL A + + +EAL HA+ R + +++ L+
Sbjct: 210 LLEKA--NEIKQPKRREALLVHAEDARISKQLVTLK 243
>gi|343510744|ref|ZP_08747955.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
gi|343516251|ref|ZP_08753292.1| DNA polymerase I [Vibrio sp. N418]
gi|342796671|gb|EGU32344.1| DNA polymerase I [Vibrio sp. N418]
gi|342800959|gb|EGU36453.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
Length = 933
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVIFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ E+V L+ + + LDR
Sbjct: 103 GLPLISISGVEADDVIGTLAHQASQQGIPVLISTGDKDMAQLVDENVTLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ GS+E
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGSME 212
Query: 294 NL 295
L
Sbjct: 213 KL 214
>gi|379023291|ref|YP_005299952.1| DNA polymerase I [Rickettsia canadensis str. CA410]
gi|376324229|gb|AFB21470.1| DNA polymerase I [Rickettsia canadensis str. CA410]
Length = 875
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL +P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKGKPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHHIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G +
Sbjct: 83 PEDLIIQLPLVR-----------DVASSLNFPILEKNGYEADDIIATFATKTAALGEDVI 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + + ++GD D
Sbjct: 132 IISSDKDLLQLMNENIKIYDPL----KGKYSTEDDVVKKFGTTANKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSIENIFNS 215
>gi|360036669|ref|YP_004938432.1| DNA polymerase I [Vibrio cholerae O1 str. 2010EL-1786]
gi|356647823|gb|AET27878.1| DNA polymerase I [Vibrio cholerae O1 str. 2010EL-1786]
Length = 939
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 60 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 107
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 108 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 167
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 168 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 217
Query: 294 NL 295
L
Sbjct: 218 AL 219
>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
Length = 879
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K++ +D N L Y + P L + +G + ++ + P ++ FD
Sbjct: 3 ERKKLVLVDGNSLAYRAFFALPLLSNEKGIHTNAVYG-FTTILMKMLEEEKPTHMLVAFD 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YK R+K +L+ F R ++L + ++E
Sbjct: 62 A-GKTTFRHKTFKEYKGGRQKTPPELSEQLPFIR-----------ELLDAYRISRYELEN 109
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL + G+ + S DKD QL +E + + + + +YT +H
Sbjct: 110 YEADDIIGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVRE 169
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + ++ ++GD D +PG VPG G KTA+KLLK+ ++E LL++
Sbjct: 170 KYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFHTVEELLSS 219
>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
Length = 936
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 31/235 (13%)
Query: 77 KSKKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADP--VIAV 122
+S K++F LD L Y P + S G + + + + P +
Sbjct: 6 ESDKKLFLLDAMALIYRAHFAFSKTPRINSKGMNTGAALGFTNSLLEILKKEKPTHIGVA 65
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD T R + P+YKA R + + RV ++ ++ N+PV+ +
Sbjct: 66 FDTSAPT-FRHEEFPAYKAQREEQPEDI---------RVAIP--YVKKIVEAFNIPVLIM 113
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G EADD+I T+ Q + G++ + +PDKD+ Q+++E+V L P + ++
Sbjct: 114 DGFEADDIIGTIAKQAGEDGFKVYMMTPDKDYAQMVTENVFLYKPAFMGNGVDVLGVEEV 173
Query: 243 IAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+++ D + + + + GD VD +PGI PG G KTA+K LK++GS+E LL
Sbjct: 174 KKKFDIDRVEQVIDILGLQGDAVDNIPGI----PGVGAKTAIKFLKQYGSVEGLL 224
>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
Length = 912
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPS 138
R FF L V +P+ +G + S+ + + P +AV G R ++
Sbjct: 33 RAFFALPVENFSTTTGQPTNAVYG-FTSMLINVLRDEQPTHVAVAFDVGRKTFRNEIYAE 91
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YKA+R + S RG+V I +VL +VPV+ EG+EADDVIATL
Sbjct: 92 YKANRSE-------SPTDFRGQV----SLIQEVLAALHVPVITAEGYEADDVIATLTVAA 140
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
+++G ++ + D+D QL++E V ++ P + + + +T + A+Y P
Sbjct: 141 VEQGMDVLICTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVEAKYGLSPAQYPDFAA 200
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
+ GD D +P I P G KTA K ++++GSL+ L++ V TV + E L +H
Sbjct: 201 LRGDPSDNLPSI----PSVGEKTAAKWVREYGSLDALVD--QVDTV-KGKVGEKLREHLS 253
Query: 319 YLRRNYEVLALRR 331
+ +N + L R
Sbjct: 254 SVLQNRRLTELDR 266
>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
gi|379740006|ref|YP_005331975.1| DNA polymerase I [Vibrio cholerae IEC224]
gi|417811189|ref|ZP_12457856.1| DNA polymerase I [Vibrio cholerae HC-49A2]
gi|418330820|ref|ZP_12941782.1| DNA polymerase I [Vibrio cholerae HC-06A1]
gi|418335786|ref|ZP_12944690.1| DNA polymerase I [Vibrio cholerae HC-23A1]
gi|418342353|ref|ZP_12949169.1| DNA polymerase I [Vibrio cholerae HC-28A1]
gi|418347529|ref|ZP_12952270.1| DNA polymerase I [Vibrio cholerae HC-43A1]
gi|418353036|ref|ZP_12955764.1| DNA polymerase I [Vibrio cholerae HC-61A1]
gi|419824579|ref|ZP_14348091.1| DNA polymerase I family protein [Vibrio cholerae CP1033(6)]
gi|421315395|ref|ZP_15765970.1| DNA polymerase I [Vibrio cholerae CP1032(5)]
gi|421318906|ref|ZP_15769469.1| DNA polymerase I [Vibrio cholerae CP1038(11)]
gi|421322961|ref|ZP_15773495.1| DNA polymerase I [Vibrio cholerae CP1041(14)]
gi|421326412|ref|ZP_15776932.1| DNA polymerase I [Vibrio cholerae CP1042(15)]
gi|421330338|ref|ZP_15780825.1| DNA polymerase I [Vibrio cholerae CP1046(19)]
gi|421337492|ref|ZP_15787951.1| DNA polymerase I [Vibrio cholerae CP1048(21)]
gi|421337845|ref|ZP_15788288.1| DNA polymerase I [Vibrio cholerae HC-20A2]
gi|422890139|ref|ZP_16932588.1| DNA polymerase I [Vibrio cholerae HC-40A1]
gi|422900925|ref|ZP_16936338.1| DNA polymerase I [Vibrio cholerae HC-48A1]
gi|422905109|ref|ZP_16939986.1| DNA polymerase I [Vibrio cholerae HC-70A1]
gi|422911857|ref|ZP_16946397.1| DNA polymerase I [Vibrio cholerae HFU-02]
gi|422924322|ref|ZP_16957383.1| DNA polymerase I [Vibrio cholerae HC-38A1]
gi|423143384|ref|ZP_17131013.1| DNA polymerase I [Vibrio cholerae HC-19A1]
gi|423148366|ref|ZP_17135738.1| DNA polymerase I [Vibrio cholerae HC-21A1]
gi|423152152|ref|ZP_17139377.1| DNA polymerase I [Vibrio cholerae HC-22A1]
gi|423154945|ref|ZP_17142091.1| DNA polymerase I [Vibrio cholerae HC-32A1]
gi|423158809|ref|ZP_17145790.1| DNA polymerase I [Vibrio cholerae HC-33A2]
gi|423163471|ref|ZP_17150282.1| DNA polymerase I [Vibrio cholerae HC-48B2]
gi|423729483|ref|ZP_17702821.1| DNA polymerase I family protein [Vibrio cholerae HC-17A1]
gi|423745263|ref|ZP_17710999.1| DNA polymerase I family protein [Vibrio cholerae HC-50A2]
gi|423889538|ref|ZP_17725038.1| DNA polymerase I family protein [Vibrio cholerae HC-62A1]
gi|423922951|ref|ZP_17729650.1| DNA polymerase I family protein [Vibrio cholerae HC-77A1]
gi|424000656|ref|ZP_17743760.1| DNA polymerase I family protein [Vibrio cholerae HC-17A2]
gi|424004819|ref|ZP_17747818.1| DNA polymerase I family protein [Vibrio cholerae HC-37A1]
gi|424022616|ref|ZP_17762293.1| DNA polymerase I family protein [Vibrio cholerae HC-62B1]
gi|424025635|ref|ZP_17765266.1| DNA polymerase I family protein [Vibrio cholerae HC-69A1]
gi|424585007|ref|ZP_18024615.1| DNA polymerase I [Vibrio cholerae CP1030(3)]
gi|424589380|ref|ZP_18028839.1| DNA polymerase I [Vibrio cholerae CP1037(10)]
gi|424593634|ref|ZP_18032989.1| DNA polymerase I [Vibrio cholerae CP1040(13)]
gi|424597563|ref|ZP_18036776.1| DNA polymerase I [Vibrio Cholerae CP1044(17)]
gi|424600338|ref|ZP_18039508.1| DNA polymerase I [Vibrio cholerae CP1047(20)]
gi|424605240|ref|ZP_18044220.1| DNA polymerase I [Vibrio cholerae CP1050(23)]
gi|424608963|ref|ZP_18047836.1| DNA polymerase I [Vibrio cholerae HC-39A1]
gi|424611875|ref|ZP_18050697.1| DNA polymerase I [Vibrio cholerae HC-41A1]
gi|424615760|ref|ZP_18054466.1| DNA polymerase I [Vibrio cholerae HC-42A1]
gi|424620514|ref|ZP_18059054.1| DNA polymerase I [Vibrio cholerae HC-47A1]
gi|424643330|ref|ZP_18081100.1| DNA polymerase I [Vibrio cholerae HC-56A2]
gi|424651261|ref|ZP_18088798.1| DNA polymerase I [Vibrio cholerae HC-57A2]
gi|443502166|ref|ZP_21069170.1| DNA polymerase I [Vibrio cholerae HC-64A1]
gi|443506065|ref|ZP_21072876.1| DNA polymerase I [Vibrio cholerae HC-65A1]
gi|443509901|ref|ZP_21076587.1| DNA polymerase I [Vibrio cholerae HC-67A1]
gi|443513744|ref|ZP_21080301.1| DNA polymerase I [Vibrio cholerae HC-68A1]
gi|443517548|ref|ZP_21083987.1| DNA polymerase I [Vibrio cholerae HC-71A1]
gi|443522136|ref|ZP_21088398.1| DNA polymerase I [Vibrio cholerae HC-72A2]
gi|443529070|ref|ZP_21095092.1| DNA polymerase I [Vibrio cholerae HC-7A1]
gi|443533807|ref|ZP_21099743.1| DNA polymerase I [Vibrio cholerae HC-80A1]
gi|443536629|ref|ZP_21102489.1| DNA polymerase I [Vibrio cholerae HC-81A1]
gi|449054779|ref|ZP_21733447.1| DNA polymerase I [Vibrio cholerae O1 str. Inaba G4222]
gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
gi|340046114|gb|EGR07048.1| DNA polymerase I [Vibrio cholerae HC-49A2]
gi|341626833|gb|EGS52189.1| DNA polymerase I [Vibrio cholerae HC-70A1]
gi|341628368|gb|EGS53626.1| DNA polymerase I [Vibrio cholerae HC-48A1]
gi|341628713|gb|EGS53931.1| DNA polymerase I [Vibrio cholerae HC-40A1]
gi|341641977|gb|EGS66488.1| DNA polymerase I [Vibrio cholerae HFU-02]
gi|341649245|gb|EGS73239.1| DNA polymerase I [Vibrio cholerae HC-38A1]
gi|356422919|gb|EHH76382.1| DNA polymerase I [Vibrio cholerae HC-06A1]
gi|356423645|gb|EHH77086.1| DNA polymerase I [Vibrio cholerae HC-21A1]
gi|356427793|gb|EHH81033.1| DNA polymerase I [Vibrio cholerae HC-19A1]
gi|356434606|gb|EHH87783.1| DNA polymerase I [Vibrio cholerae HC-23A1]
gi|356435980|gb|EHH89115.1| DNA polymerase I [Vibrio cholerae HC-22A1]
gi|356438865|gb|EHH91867.1| DNA polymerase I [Vibrio cholerae HC-28A1]
gi|356445560|gb|EHH98363.1| DNA polymerase I [Vibrio cholerae HC-32A1]
gi|356448614|gb|EHI01377.1| DNA polymerase I [Vibrio cholerae HC-43A1]
gi|356451269|gb|EHI03964.1| DNA polymerase I [Vibrio cholerae HC-33A2]
gi|356455549|gb|EHI08190.1| DNA polymerase I [Vibrio cholerae HC-61A1]
gi|356456844|gb|EHI09425.1| DNA polymerase I [Vibrio cholerae HC-48B2]
gi|378793516|gb|AFC56987.1| DNA polymerase I [Vibrio cholerae IEC224]
gi|395924140|gb|EJH34949.1| DNA polymerase I [Vibrio cholerae CP1032(5)]
gi|395925310|gb|EJH36110.1| DNA polymerase I [Vibrio cholerae CP1041(14)]
gi|395926448|gb|EJH37231.1| DNA polymerase I [Vibrio cholerae CP1038(11)]
gi|395929115|gb|EJH39866.1| DNA polymerase I [Vibrio cholerae CP1048(21)]
gi|395935946|gb|EJH46680.1| DNA polymerase I [Vibrio cholerae CP1042(15)]
gi|395936336|gb|EJH47061.1| DNA polymerase I [Vibrio cholerae CP1046(19)]
gi|395948110|gb|EJH58764.1| DNA polymerase I [Vibrio cholerae HC-20A2]
gi|395964992|gb|EJH75179.1| DNA polymerase I [Vibrio cholerae HC-56A2]
gi|395965192|gb|EJH75371.1| DNA polymerase I [Vibrio cholerae HC-57A2]
gi|395967822|gb|EJH77862.1| DNA polymerase I [Vibrio cholerae HC-42A1]
gi|395977010|gb|EJH86440.1| DNA polymerase I [Vibrio cholerae HC-47A1]
gi|395979654|gb|EJH88992.1| DNA polymerase I [Vibrio cholerae CP1030(3)]
gi|395980118|gb|EJH89418.1| DNA polymerase I [Vibrio cholerae CP1047(20)]
gi|408011333|gb|EKG49154.1| DNA polymerase I [Vibrio cholerae HC-39A1]
gi|408018277|gb|EKG55732.1| DNA polymerase I [Vibrio cholerae HC-41A1]
gi|408037782|gb|EKG74156.1| DNA polymerase I [Vibrio cholerae CP1037(10)]
gi|408038704|gb|EKG75032.1| DNA polymerase I [Vibrio cholerae CP1040(13)]
gi|408045826|gb|EKG81594.1| DNA polymerase I [Vibrio Cholerae CP1044(17)]
gi|408047697|gb|EKG83263.1| DNA polymerase I [Vibrio cholerae CP1050(23)]
gi|408612554|gb|EKK85889.1| DNA polymerase I family protein [Vibrio cholerae CP1033(6)]
gi|408628549|gb|EKL01285.1| DNA polymerase I family protein [Vibrio cholerae HC-17A1]
gi|408645047|gb|EKL16714.1| DNA polymerase I family protein [Vibrio cholerae HC-50A2]
gi|408660375|gb|EKL31393.1| DNA polymerase I family protein [Vibrio cholerae HC-77A1]
gi|408661197|gb|EKL32189.1| DNA polymerase I family protein [Vibrio cholerae HC-62A1]
gi|408850168|gb|EKL90144.1| DNA polymerase I family protein [Vibrio cholerae HC-37A1]
gi|408850499|gb|EKL90454.1| DNA polymerase I family protein [Vibrio cholerae HC-17A2]
gi|408876294|gb|EKM15422.1| DNA polymerase I family protein [Vibrio cholerae HC-62B1]
gi|408882369|gb|EKM21202.1| DNA polymerase I family protein [Vibrio cholerae HC-69A1]
gi|443433469|gb|ELS75975.1| DNA polymerase I [Vibrio cholerae HC-64A1]
gi|443437307|gb|ELS83403.1| DNA polymerase I [Vibrio cholerae HC-65A1]
gi|443441140|gb|ELS90807.1| DNA polymerase I [Vibrio cholerae HC-67A1]
gi|443444953|gb|ELS98209.1| DNA polymerase I [Vibrio cholerae HC-68A1]
gi|443448814|gb|ELT05427.1| DNA polymerase I [Vibrio cholerae HC-71A1]
gi|443451850|gb|ELT12092.1| DNA polymerase I [Vibrio cholerae HC-72A2]
gi|443460156|gb|ELT27545.1| DNA polymerase I [Vibrio cholerae HC-7A1]
gi|443463029|gb|ELT34044.1| DNA polymerase I [Vibrio cholerae HC-80A1]
gi|443467876|gb|ELT42530.1| DNA polymerase I [Vibrio cholerae HC-81A1]
gi|448265925|gb|EMB03158.1| DNA polymerase I [Vibrio cholerae O1 str. Inaba G4222]
Length = 934
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 NL 295
L
Sbjct: 213 AL 214
>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
gi|440711971|ref|ZP_20892598.1| DNA polymerase I [Vibrio cholerae 4260B]
gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
gi|439972394|gb|ELP48680.1| DNA polymerase I [Vibrio cholerae 4260B]
Length = 934
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 NL 295
L
Sbjct: 213 AL 214
>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404490287|ref|YP_006714393.1| DNA polymerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349288|gb|AAU41922.1| DNA polymerase 1 [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 879
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K++ +D N L Y + P L + +G + ++ + P ++ FD
Sbjct: 3 ERKKLVLVDGNSLAYRAFFALPLLSNEKGIHTNAVYG-FTTILMKMLEEEKPTHMLVAFD 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YK R+K +L+ F R ++L + ++E
Sbjct: 62 A-GKTTFRHKTFKEYKGGRQKTPPELSEQLPFIR-----------ELLDAYRISRYELEN 109
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL + G+ + S DKD QL +E + + + + +YT +H
Sbjct: 110 YEADDIIGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVRE 169
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y P + ++ ++GD D +PG VPG G KTA+KLLK+ ++E LL++
Sbjct: 170 KYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFHTVEELLSS 219
>gi|424873127|ref|ZP_18296789.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393168828|gb|EJC68875.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 999
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 115 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
+ ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 171 VVEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 227 IKQVKR---RETILANIDMARLSRDLVRLR 253
>gi|386759473|ref|YP_006232689.1| hypothetical protein MY9_2900 [Bacillus sp. JS]
gi|384932755|gb|AFI29433.1| hypothetical protein MY9_2900 [Bacillus sp. JS]
Length = 880
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ +EADD+I TL + G+ V S DKD QL +++ + + + + FYT
Sbjct: 104 RYELDQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDNTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
Length = 924
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 21/216 (9%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
HA +AV G R L YKAHR + +L +FS + D
Sbjct: 53 HAGTHLAVIFDAGRHTFRNDLYSEYKAHRPEPPEEL--RPQFS---------LVRDATAA 101
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
VP ++ G EADD+IA +V G + + S DKD QLI V ++ P+++
Sbjct: 102 FGVPALEEAGWEADDLIAAYARKVTDAGGQCTIYSSDKDLMQLIRPGVMMMDPIKN---- 157
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
K A++ P ++ ++GD VD VPG VPG G KTA L+ ++GSL+
Sbjct: 158 RPIGEKEVEAKFGVSPDRVAQVQALIGDPVDNVPG----VPGIGPKTASALMAEYGSLDG 213
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+L A R ++ L HAD R + E++ LR
Sbjct: 214 ILAGAEGMKASRR--RDNLLAHADMARLSLELVTLR 247
>gi|359299477|ref|ZP_09185316.1| DNA polymerase I [Haemophilus [parainfluenzae] CCUG 13788]
gi|402304367|ref|ZP_10823437.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
gi|400377955|gb|EJP30820.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
Length = 959
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFG--RWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L QVS + + VFD +G T R +L YK+HR
Sbjct: 27 PLTNRDGEPTGAVYGVINMLKSLITQVSPSH-IAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H I+ LG +P++ IEG EADDVI TL Q + G +
Sbjct: 85 PDDL-------RAQIQPLHA-IIKALG---IPLISIEGVEADDVIGTLAVQAARDGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL++E + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNEHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSLKTI 214
>gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter daltonii FRC-32]
gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter daltonii FRC-32]
Length = 480
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 84 FLDVNPLCYEGSRPSLQSFG-RWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142
+ + L G P+ FG + L Q + D V VFD RR++ P YKAH
Sbjct: 20 YYGIRDLATSGGMPTNAVFGFTRMLLTLLQENRPDYVAVVFDPPREDTFRREIYPPYKAH 79
Query: 143 RRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKG 202
R L + R V N+P ++ G EADDVIATL + +G
Sbjct: 80 RDAMPEDLVPQIPYIRKMVQ-----------ALNIPALEAPGFEADDVIATLARRFAAEG 128
Query: 203 YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGD 262
+ V + DKD Q++ E + L+ + + + + + ++ P + + GD
Sbjct: 129 IQVTVVTGDKDLLQIVGEGIGLLDTMNERRSGT----EEVLDRFGVTPEQVADVLGLAGD 184
Query: 263 DVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
D +PG VPG G KTA KL+++ GSLE +L
Sbjct: 185 TADNIPG----VPGIGEKTAAKLVRQFGSLEGVLE 215
>gi|427402574|ref|ZP_18893571.1| DNA polymerase I [Massilia timonae CCUG 45783]
gi|425718380|gb|EKU81327.1| DNA polymerase I [Massilia timonae CCUG 45783]
Length = 944
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 29/215 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R L P YKA R L G+ + I +V+ P
Sbjct: 75 IACVFDAKGKT-FRDDLYPEYKATRASMPEDL-----------GKQIEPIHEVVRYMGWP 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSF 236
++ ++G EADDVI TL Q +G + VV++ DKD QL+++ V L+ M + +D
Sbjct: 123 ILMVDGVEADDVIGTLAVQATARGMKTVVSTGDKDLAQLVNDKVMLINTMTNERMDEAGV 182
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+A++ P+ + +VGD VD VPG+ P KTA+K L HGSL+ ++
Sbjct: 183 ------LAKFGVPPNRIIDYLTLVGDTVDNVPGVAKCGP----KTAVKWLTLHGSLDGVI 232
Query: 297 -NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NAA++ Q AL ++L + E++ ++
Sbjct: 233 ENAASIGGAVGANLQAAL----EWLPKGRELITVK 263
>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 957
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIDKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|424810745|ref|ZP_18236086.1| DNA polymerase I [Vibrio mimicus SX-4]
gi|342322117|gb|EGU17911.1| DNA polymerase I [Vibrio mimicus SX-4]
Length = 943
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 60 SDRMAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 107
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 108 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 167
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 168 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 217
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 218 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 258
>gi|433445071|ref|ZP_20409692.1| 5'-3' exonuclease [Anoxybacillus flavithermus TNO-09.006]
gi|432001233|gb|ELK22114.1| 5'-3' exonuclease [Anoxybacillus flavithermus TNO-09.006]
Length = 277
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V+ +D G T R + P YKA+R + +L ++ V +LG +P
Sbjct: 57 VVCCWD-MGSTTFRTEWFPDYKANRGEPPHELMPQFDLAKEAVA--------MLG---IP 104
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ + G EADD I +LV Q + G R + + D+D QL+SE V + + + + + YT
Sbjct: 105 NIGVLGAEADDCIGSLVKQY-RDGMRISIVTGDRDLFQLLSEHVTVYLLAKGIGNYEAYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
L + + PH + ++ ++GD D PG++ G G K A KL++++GS+E ++
Sbjct: 164 LDRFTQEKGIQPHQLIDVKALMGDASDNYPGVR----GIGEKQAFKLIQQYGSIEGIIEN 219
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
A T + Q+ +T+H D L + ++ A+
Sbjct: 220 FANLTKAQ---QQKITEHLDLLHLSRKLAAI 247
>gi|407692488|ref|YP_006817277.1| DNA polymerase I [Actinobacillus suis H91-0380]
gi|407388545|gb|AFU19038.1| DNA polymerase I [Actinobacillus suis H91-0380]
Length = 957
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ ++ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLIAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANDGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
Length = 829
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 38/232 (16%)
Query: 81 RVFFLDVNPLCYEGSR-----------PSLQSFGRWLSLFFDQVSHADP--VIAVFDGEG 127
RVF D L Y+ P+ +G + LF + P FD G
Sbjct: 3 RVFLFDGTGLAYKAYHAIKGLSTTDGFPTNAVYG-FARLFLKMLRELKPRYCAVAFDA-G 60
Query: 128 GTEHRRQLLPSYKAHRR----KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
R ++ YKA+R+ F QL + F L LG V V+++
Sbjct: 61 RKTFRSEISKDYKANRKPTPDDFKVQLPYIKEF------------LKCLG---VKVLELP 105
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADD+I TLV ++ +KG+ V+ + DKD KQL+S V +++P + ++ + +
Sbjct: 106 GYEADDIIGTLVKRLQEKGFEVVIVTSDKDMKQLLSPRVSILVPPKGKEKAKWIDYSSFK 165
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ +P + L + GD D +PG VPG G KTALKLL++ +LE +
Sbjct: 166 EETGIEPETVPDLFGLSGDRTDNIPG----VPGIGEKTALKLLREFKNLEGI 213
>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
Length = 938
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 213 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 253
>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
gi|417814943|ref|ZP_12461585.1| DNA polymerase I [Vibrio cholerae HCUF01]
gi|421348770|ref|ZP_15799145.1| DNA polymerase I [Vibrio cholerae HC-46A1]
gi|424655213|ref|ZP_18092526.1| DNA polymerase I [Vibrio cholerae HC-81A2]
gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
gi|340045788|gb|EGR06727.1| DNA polymerase I [Vibrio cholerae HCUF01]
gi|395939181|gb|EJH49864.1| DNA polymerase I [Vibrio cholerae HC-46A1]
gi|408058246|gb|EKG93060.1| DNA polymerase I [Vibrio cholerae HC-81A2]
Length = 906
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 24/182 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKAHR +L R +V HQ V+
Sbjct: 27 SDRMAVIFDAKGKT-FRDEMYDQYKAHRPPMPDEL-------RCQVEPLHQ----VIRAM 74
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ +++ L+ + + LDR
Sbjct: 75 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDR 134
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 135 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 184
Query: 294 NL 295
L
Sbjct: 185 AL 186
>gi|421835630|ref|ZP_16270343.1| DNA polymerase I, partial [Clostridium botulinum CFSAN001627]
gi|409742679|gb|EKN41968.1| DNA polymerase I, partial [Clostridium botulinum CFSAN001627]
Length = 376
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y +
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
Length = 938
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 213 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 253
>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
Length = 938
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 55 SDRMAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 103 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 213 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 253
>gi|381190626|ref|ZP_09898144.1| DNA polymerase I [Thermus sp. RL]
gi|380451509|gb|EIA39115.1| DNA polymerase I [Thermus sp. RL]
Length = 831
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 60 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 106
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ +++G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 107 TRL---EVQGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 160
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 161 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 214
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+L + V + +E + H + L+ + E+ +R
Sbjct: 215 ILK--NLDRVKPESVRERIKAHLEDLKLSLELSRVR 248
>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 957
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIDKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 887
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 105 WLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGR 163
+LS+F + ++ +P +AV R +L P YKA R + +G+V
Sbjct: 47 FLSMFVNILTSEEPTHLAVAFDVARETFRNELFPEYKAQRAPTPEEF-------KGQV-- 97
Query: 164 SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + D+L V V+ G+EADDVIATL ++G + ++ + D+D QL+++DV
Sbjct: 98 --EILKDILHAMGVTTVEKPGYEADDVIATLATAATKQGMKTLIVTGDRDSFQLVNDDVT 155
Query: 224 LVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTAL 283
++ P + + + T +Y+ P + GD D +P I PG G KTA
Sbjct: 156 VLYPTRGVSTLNRMTPAAVEKKYDLTPTQYPDFAALRGDPSDNLPKI----PGVGEKTAT 211
Query: 284 KLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
K +KK+ +L+NLL + E K D LR + +A+ R
Sbjct: 212 KWIKKYETLDNLLA----------HVDEIKGKVGDALRERVDQVAMNR 249
>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 943
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD +G T R ++ YKAHR L + + I ++
Sbjct: 52 ADHIACVFDAKGKT-FRDEMYSEYKAHRSPMPEDLV-----------KQIEPIHAMVKAM 99
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDR 233
PV+ + G EADDVI TL Q + G+ ++++ DKD QL++ V L+ M + LD
Sbjct: 100 GWPVLMVSGVEADDVIGTLACQATEAGWETIISTGDKDLAQLVNPSVTLINTMTNEKLD- 158
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
++ I ++ P + I+GD VD VPG VP G KTA K L + G+L+
Sbjct: 159 -----IEGVIEKFGVPPELIVDYLSIIGDTVDNVPG----VPKAGPKTANKWLAEFGNLD 209
Query: 294 NLL-NAAAVRTVGRDYAQEALT 314
NL+ NA V+ V + + +LT
Sbjct: 210 NLMANADQVKGVVGENLRASLT 231
>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
Length = 872
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +L ++ +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEEL-----------AEQVDYLKEIIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PG VP G KTA+KLLK G++ENL+
Sbjct: 159 FDEKAILERYGITPQQFIDLKGLMGDKSDNIPG----VPNIGEKTAIKLLKDFGTIENLI 214
>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
Length = 882
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D ++ FD T R Q YKA R+K +L +G +L K
Sbjct: 60 DYIVCTFDKSAPT-FRHQAYKDYKAGRKKMPEELREQFPIVKG-----------LLSKLA 107
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ + +IEG EADD+I TL +K + + DKD QL S+ +++ + +
Sbjct: 108 IEIFEIEGFEADDLIGTLSKFAEEKDIEVYIVTGDKDALQLASDTTKILFTKRGITEREI 167
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y + + + P + ++ ++GD D +PG VPG G KTALKL+K++ S+EN+L
Sbjct: 168 YDRQKVVDEMGVTPTEFIDVKGLMGDPSDNIPG----VPGIGEKTALKLIKEYSSVENVL 223
Query: 297 N 297
N
Sbjct: 224 N 224
>gi|414175584|ref|ZP_11429988.1| DNA polymerase I [Afipia broomeae ATCC 49717]
gi|410889413|gb|EKS37216.1| DNA polymerase I [Afipia broomeae ATCC 49717]
Length = 1020
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R +L P YKA R L +F+ I + + ++P ++
Sbjct: 89 IFDKSEVT-FRNELYPEYKAQRAPAPDDLIP--QFA---------LIREAVRAFDLPCLE 136
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G+EADD+IAT V + ++G A + S DKD QL++E V + ++D +
Sbjct: 137 QSGYEADDLIATYVREACERGATATIVSSDKDLMQLVTECVSMYDTMKD----RRIGIPE 192
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + ++ + GD VD VPG VPG G KTA +L+ ++G LE LL A
Sbjct: 193 VIEKFGVPPEKVVEVQALAGDSVDNVPG----VPGIGIKTAAQLINEYGDLETLLKRAP- 247
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +EAL ++AD R + +++ L
Sbjct: 248 -EIKQPKRREALIENADKARISKKLVQL 274
>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
Length = 849
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD +G R+ YKA+R+ L + R ++L N
Sbjct: 50 DYVAVAFDKKGRA-VRKSEYEEYKANRKPMPDSLQVQIPYVR-----------EILAAMN 97
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS- 235
+PV++ EG+EADDVI TLV + + V+ + D+D QL+ ++V + + DR +
Sbjct: 98 IPVLECEGYEADDVIGTLVNRFKARDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTE 157
Query: 236 -FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
YT+++ +Y H + + +VGD D +PG++ G G KTA+KLL+++ +LEN
Sbjct: 158 DLYTVENVKEKYGVFAHQVVDYKALVGDASDNIPGVK----GIGDKTAIKLLEEYQTLEN 213
Query: 295 L 295
+
Sbjct: 214 I 214
>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 957
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIDKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
Length = 890
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R ++ YKA+R L R +V HQ V+
Sbjct: 11 SDRMAVIFDAKGKT-FRDEMYDQYKANRPPMPDDL-------RCQVEPLHQ----VIRAM 58
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q G ++++ DKD QL+ E++ L+ + + LDR
Sbjct: 59 GLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDR 118
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G LE
Sbjct: 119 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTATALLQGIGGLE 168
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL AA+ G + L ++ D +Y++ ++
Sbjct: 169 DLYANLDKIAALGFRGSKTMAQKLEENRDNANLSYQLATIK 209
>gi|443292882|ref|ZP_21031976.1| DNA polymerase I [Micromonospora lupini str. Lupac 08]
gi|385884092|emb|CCH20127.1| DNA polymerase I [Micromonospora lupini str. Lupac 08]
Length = 899
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 29/210 (13%)
Query: 130 EHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVV 180
E ++ ++ RR F +++++ + GRS + +VL +PVV
Sbjct: 54 EQPTHIVVAFDVSRRSF-----RTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALQIPVV 108
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP---LQDLDRWSFY 237
++EG+EADDVIATL Q +G +++S D+D QL+ + + ++ P + DL R
Sbjct: 109 EMEGYEADDVIATLACQARDQGMSVLISSGDRDAFQLVDDQITVLYPRKGVSDLARMDPA 168
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL- 296
++ A+Y P L +VG+ D +PGI PG G KTA K + +G +E ++
Sbjct: 169 AIE---AKYGVGPQQYRDLAALVGETSDNLPGI----PGVGPKTAAKWITTYGGVEGVIA 221
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEV 326
A ++ D +E L AD + RNYE+
Sbjct: 222 RADEIKGKAGDSLRERL---ADVI-RNYEI 247
>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
Length = 899
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 25/243 (10%)
Query: 87 VNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRR 144
V PL P+ G + + + +P + FD + E R+++ P+YKAHR
Sbjct: 28 VPPLSTSKGVPTNAVLG-FTRMVLKSLKDLEPTHIALAFDKDSRAE-RQKIDPNYKAHRE 85
Query: 145 KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYR 204
L +F+ I V+ N+PV+++ G EADDVI TL + +G+
Sbjct: 86 GPPEDLVP--QFA---------LIRKVVEALNLPVLEVPGWEADDVIGTLAARAKAEGFC 134
Query: 205 AVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
V + DKDF Q++ EDV+L P++D+ + +P ++GD V
Sbjct: 135 VQVVTGDKDFIQIVDEDVRLFDPMKDVHTGP----AEVKERLGIEPRQMRDYLSLIGDAV 190
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNY 324
D VP VPG G KTA LL++ G ++ +L A + V + +EA++ H + L R
Sbjct: 191 DNVPK----VPGIGDKTAAALLQQFGDVDTML--ARLDEVKKPKIREAISSHRESLLRAR 244
Query: 325 EVL 327
+++
Sbjct: 245 QLV 247
>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 872
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + YKA R+ +L ++ +++ N
Sbjct: 51 DYIAIAFDKKAPT-FRHKEYQDYKATRQAMPEEL-----------AEQVDYLKEIIDGFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ +++EG+EADD+I T+ +KG +V + D+D QL+S+ V++ + + + +
Sbjct: 99 IKTLELEGYEADDIIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ K + +Y P + L+ ++GD D +PG VP G KTA+KLLK G++ENL+
Sbjct: 159 FDEKAILERYGITPQQFIDLKGLMGDKSDNIPG----VPNIGEKTAIKLLKDFGTIENLI 214
>gi|365121705|ref|ZP_09338620.1| DNA polymerase I [Tannerella sp. 6_1_58FAA_CT1]
gi|363644992|gb|EHL84272.1| DNA polymerase I [Tannerella sp. 6_1_58FAA_CT1]
Length = 926
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 31/233 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPV--------IAV-FD 124
+K++F LD L Y P + S G S F V+ + V IAV FD
Sbjct: 3 EKKLFLLDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFVNTLEDVLKKENPSHIAVGFD 62
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R + YKA R + + + +S I +++ N+P++++ G
Sbjct: 63 PSGPT-FRHEAYELYKAQREE-----------TPEVIRQSVPIIKEIIKAYNIPIIEVPG 110
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADDVI TL ++G+ + +PDKD+ QL+S + + P + ++
Sbjct: 111 FEADDVIGTLAKLAEKEGFDTYMMTPDKDYGQLVSPHIFIYKPKFGGGDFEVRGVEEIKQ 170
Query: 245 QYNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+++ + P + + ++GD D +PG PG G KTA+KL+ + GS+ENLL
Sbjct: 171 KFSIERPEQVIDILGLMGDASDNIPG----CPGVGEKTAIKLVNEFGSIENLL 219
>gi|433773133|ref|YP_007303600.1| DNA polymerase I [Mesorhizobium australicum WSM2073]
gi|433665148|gb|AGB44224.1| DNA polymerase I [Mesorhizobium australicum WSM2073]
Length = 985
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R L P YKA+R L I N+P V+
Sbjct: 67 IFDYSSKT-FRNDLYPEYKANRSAPPEDLIPQ-----------FGLIRQATRAFNLPCVE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+EG EADD+IAT + G + S DKD QL+ E V + P++D +
Sbjct: 115 MEGFEADDLIATYCRLACEAGGDTTIISSDKDLMQLVGETVGMYDPMKDRQ----IGIPE 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + L+ + GD VD VPG VPG G KTA +LL++ G L+ LL A
Sbjct: 171 VVEKWGVPPEKMIDLQALTGDSVDNVPG----VPGIGPKTAAQLLEQFGDLDGLLARAG- 225
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ ++ +E++ +AD R + +++ L+
Sbjct: 226 -EIKQEKRRESIIANADKARISRQLVTLK 253
>gi|359772831|ref|ZP_09276246.1| DNA polymerase I [Gordonia effusa NBRC 100432]
gi|359310018|dbj|GAB19024.1| DNA polymerase I [Gordonia effusa NBRC 100432]
Length = 902
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R ++ P YKA R +S RG+V I DVL +P +E EADDVI
Sbjct: 75 RSEMFPEYKAQRE-------SSPDAFRGQV----DIIKDVLDVLGIPHFSVENFEADDVI 123
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q ++ Y+ +V + D+D QL+++++ ++ P + + + +T + +Y P
Sbjct: 124 ATLATQADERDYKVLVVTGDRDALQLVNDNITVLYPKRGVSELTRFTPEEVEKKYGLTPA 183
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
I GD D +P I PG G KTA K ++ +GSL L+ D+ E
Sbjct: 184 QYPDYAAIRGDKSDNLPNI----PGVGEKTAAKWIRDYGSLSELV----------DHVDE 229
Query: 312 ALTKHADYLRRN 323
K D LR N
Sbjct: 230 VRGKVGDALRAN 241
>gi|404421596|ref|ZP_11003310.1| DNA polymerase I [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
gi|403658824|gb|EJZ13522.1| DNA polymerase I [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
Length = 908
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH V A FD T R++ P YK R +A+ RG++ + +
Sbjct: 68 EQPSH---VAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQIDITKE---- 112
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG + V+ G EADD+IATL Q GYR +V + D+D QL+S+DV ++ P +
Sbjct: 113 VLGALGITVLAEPGFEADDIIATLATQGEDAGYRVLVVTGDRDSLQLVSDDVTVLYPRKG 172
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T + +Y P + GD D +PGI PG G KTA K + ++G
Sbjct: 173 VSELTRFTPEAVAEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIVEYG 228
Query: 291 SLENLLN 297
SL+ L++
Sbjct: 229 SLQGLVD 235
>gi|392956932|ref|ZP_10322457.1| DNA polymerase I [Bacillus macauensis ZFHKF-1]
gi|391876834|gb|EIT85429.1| DNA polymerase I [Bacillus macauensis ZFHKF-1]
Length = 877
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 22/184 (11%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V+ FD G T R YK R+K +L S++F R +LD G
Sbjct: 52 DHVLVAFDA-GKTTFRHATFTEYKGGRQKTPPEL--SEQFPLIRQ------LLDAFG--- 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP---LQDLDR 233
+ ++ +EADD+I TL GQ + ++ V + DKD QL+++DV + + + D+DR
Sbjct: 100 IKRYELPNYEADDIIGTLSGQAHDEKWKVTVITGDKDMLQLVTDDVTVALTKKGITDIDR 159
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ ++ +Y+ P + ++ ++GD D +PG VPG G KTA+KL+K+ GSLE
Sbjct: 160 FDPALIEE---RYSLTPQQIIDMKGLMGDASDNIPG----VPGVGEKTAIKLIKQFGSLE 212
Query: 294 NLLN 297
+L
Sbjct: 213 AVLE 216
>gi|347525546|ref|YP_004832294.1| DNA polymerase I [Lactobacillus ruminis ATCC 27782]
gi|345284505|gb|AEN78358.1| DNA polymerase I [Lactobacillus ruminis ATCC 27782]
Length = 885
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 101 SFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGR 160
SF R L D V + D ++ FD G R + YKA R+K +L S++F
Sbjct: 43 SFKRMLDKILDDV-NPDKILVAFDA-GKKTFRTEKYSDYKAGRKKTPEEL--SEQFP--- 95
Query: 161 VGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
++ +L + +++ +EADD+I T+ + + GY + + D+D QL++
Sbjct: 96 ------YVKKLLDCYGIKHYELKNYEADDIIGTMSKEAEKHGYETTIVTGDRDLTQLVTN 149
Query: 221 DVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
+ + ++ + +YT H + P L+ + GD D PG+ V G K
Sbjct: 150 QTTVALTVKGVTEIEYYTPNHLSEKLGISPSQITDLKGLAGDTSDNYPGVSKV----GEK 205
Query: 281 TALKLLKKHGSLENL 295
TALKLL ++G++ENL
Sbjct: 206 TALKLLNQYGTIENL 220
>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
Length = 941
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 13/230 (5%)
Query: 73 LEKTKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEG 127
L+ ++F LD L Y P + S G S V+ + V+ E
Sbjct: 4 LKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLK---KEN 60
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
T PS R + Q A + + + S I D++ +P++++ G+EA
Sbjct: 61 PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 120
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DDVI TL + ++G + +PDKD+ QL+++ V + P + ++ A+++
Sbjct: 121 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFD 180
Query: 248 C-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPG----CPGVGEKTAQKLIAEFGSIENLL 226
>gi|393782517|ref|ZP_10370700.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
gi|392672744|gb|EIY66210.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
Length = 935
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 31/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVFDGE 126
++FFLD L Y P + S G S V+ + V+ FD
Sbjct: 6 KLFFLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEDVLKKENPTHIGVAFDPP 65
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + S I D++ +P+++I G+E
Sbjct: 66 GPT-FRHEAYEQYKAQREE-----------TPEAIRLSVPIIKDIIRAYRIPILEIAGYE 113
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI TL + Q+G + +PDKD+ QL+++ V + P + ++ A++
Sbjct: 114 ADDVIGTLATKAGQQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKF 173
Query: 247 NC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ P + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 174 DIQSPVQVIDMLGLMGDASDNIPG----CPGVGEKTAQKLIAEFGSIENLL 220
>gi|390452160|ref|ZP_10237712.1| DNA polymerase I [Nitratireductor aquibiodomus RA22]
gi|389660134|gb|EIM71852.1| DNA polymerase I [Nitratireductor aquibiodomus RA22]
Length = 970
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R L P YK +R + L I + ++P ++
Sbjct: 67 IFDHSSKT-FRNDLYPEYKDNRSEPPEDLVPQ-----------FGLIREATQAFDLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G EADD+IAT + G + S DKD QL+++ V + P++D + +
Sbjct: 115 MAGFEADDLIATYARLASEAGGETTIISSDKDLMQLVTDQVSMYDPMKDRE----IRIPE 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + L+ + GD VD VPG VPG G KTA +LL+++G L+ LL+ A
Sbjct: 171 VIEKWGVPPEKMIDLQALTGDSVDNVPG----VPGIGPKTAAQLLEEYGDLDTLLSRA-- 224
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ ++ +E L + A+ R + E++ LR
Sbjct: 225 NEIKQNKRRENLIEFAEKARISRELVKLR 253
>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
Length = 875
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD GG R Q+ P YKA+R L R DV N P
Sbjct: 56 VAVVFDS-GGKNFRHQIYPDYKANRPPPPEDLIVQLPLVR-----------DVASNLNFP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ +G+EADD+IAT + G V+ S DKD QL++E +++ PL + + T
Sbjct: 104 ILEKKGYEADDIIATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPL----KGKYIT 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ + ++GD D +PG VP G KTA L+ + GS+EN+ N+
Sbjct: 160 EDDVVKKFGTTSDKLREVMALIGDRSDNIPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
Length = 1016
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 84 IFDYSART-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 131
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 132 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 187
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
+ ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 188 VVEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 243
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 244 IKQVKR---RETILANIDMARLSRDLVRLR 270
>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
Length = 940
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 27/216 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + VFD G T R +L P YKA R L R ++ H+ + LG
Sbjct: 72 DRMAVVFDAPGPT-FRDELYPEYKAQRPPLPDDL-------RVQIEPVHELV-RALG--- 119
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDRW 234
P++ + G EADDVI TL+ Q Q G +VA+ DKDF QL++E ++LV + + LD
Sbjct: 120 FPLLCVSGVEADDVIGTLMHQARQNGESVLVATADKDFAQLVTEGIRLVNTMTNTVLDEA 179
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ A+Y + +VGD VD VPG VPG G KTA K L + SL+N
Sbjct: 180 AIE------AKYGITAAQFIDYLTLVGDTVDNVPG----VPGCGPKTAAKWLNEWQSLDN 229
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ A A + G+ E+L ++L E++ +R
Sbjct: 230 LM-AHADQIKGK--VGESLRAAKEFLPIGRELVTIR 262
>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 957
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ V+ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLVAQVEPSHIAVVFDAKGKT-FRGELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDDL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANAGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIDKYGIPPELIIDYLALQGDAS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGEKTALGLLQGIGSLKEI 214
>gi|334144667|ref|YP_004537823.1| DNA polymerase I [Thioalkalimicrobium cyclicum ALM1]
gi|333965578|gb|AEG32344.1| DNA polymerase I [Thioalkalimicrobium cyclicum ALM1]
Length = 935
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 30/213 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R L YKAHR +L R ++ H+ I+ LG +P
Sbjct: 58 IAVVFDAKGKT-FRNDLYADYKAHRPPMPDEL-------RVQIAPIHE-IVKALG---LP 105
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ IEG EADDVI TL Q Q A++++ DKD QL++E + L+ + D + T
Sbjct: 106 LLVIEGVEADDVIGTLAVQATQAKKDALISTGDKDMAQLVNEHITLINTMTD----TLMT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ P + ++GD D +PGI P G KTA+K L + +++NL+
Sbjct: 162 PDKVVEKFGIRPDQIIDYLALMGDTSDNIPGI----PKCGPKTAVKWLTAYDTMDNLIA- 216
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+A E K D LR + LAL R
Sbjct: 217 ---------HANEIKGKIGDTLREHIPHLALSR 240
>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
Length = 916
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 20/178 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P++ +FD +G T R ++ YKAHR L R ++ H+ +++ +G +
Sbjct: 49 PMVIIFDAKGKT-FRDEIYSEYKAHRPPMPDDL-------RPQIEPIHR-VVEAMG---L 96
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P+V ++G EADDVI T+ QV ++G VV++ DKD QL+++ V LV + + +
Sbjct: 97 PLVIVDGVEADDVIGTIAKQVGEQGREVVVSTGDKDMAQLVTDKVTLVNTMNN----TVM 152
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
++ ++ P + ++GD VD +PG VPG G KTAL LL+ GS++++
Sbjct: 153 DIQGVKDKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTALALLQGLGSIKDI 206
>gi|389865039|ref|YP_006367280.1| DNA polymerase I [Modestobacter marinus]
gi|388487243|emb|CCH88801.1| DNA polymerase I [Modestobacter marinus]
Length = 891
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 23/254 (9%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLP 137
R FF L V +P+ +G + S+ + + P + FD T R ++
Sbjct: 12 RAFFALPVENFSTTTGQPTNAVYG-FTSMLINVLRDEQPTHLAVAFDVSRKT-FRSEIYA 69
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQ 197
YKA+R + S RG+V + +VLG +VPV+ EG+EADDVIATL Q
Sbjct: 70 EYKANRSE-------SPTDFRGQV----SLVQEVLGALHVPVITAEGYEADDVIATLTVQ 118
Query: 198 VLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
+++G ++ + D+D QL++E V ++ P + + + +T + +Y P
Sbjct: 119 AVEQGMDVLICTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVETKYGLTPTQYPDFA 178
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHA 317
+ GD D +P I P G KTA K ++++GSL+ L++ V TV + E L +H
Sbjct: 179 ALRGDPSDNLPSI----PSVGEKTAAKWVREYGSLDALVD--QVDTV-KGKVGEKLREHL 231
Query: 318 DYLRRNYEVLALRR 331
+ +N + L R
Sbjct: 232 SSVLQNRRLTELDR 245
>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
gi|423337448|ref|ZP_17315192.1| DNA polymerase I [Parabacteroides distasonis CL09T03C24]
gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
gi|409237277|gb|EKN30077.1| DNA polymerase I [Parabacteroides distasonis CL09T03C24]
Length = 921
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 62 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIMGVPEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 169 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 215
>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
Length = 875
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 96 RPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
RP+ FG L F +++ D +I FD G R + L YKA R L
Sbjct: 31 RPTNAVFGFVAMLLKFIDIANPDALICAFDA-GRPAFRMEALEQYKAQRPPMDDDLKVQ- 88
Query: 155 RFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDF 214
+ ++L NVPVV+I+G E DDV+ T+ + + GY ++ + DKD
Sbjct: 89 ----------FPIVEELLEAMNVPVVRIKGWEGDDVLGTIAARDEELGYETLLVTGDKDA 138
Query: 215 KQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVV 274
QL ++ ++V + + + Y + +Y P + + GD D +PG V
Sbjct: 139 YQLATDKTRIVTTKKGITDVAIYGPAEVLERYGVRPDQFIDFLGLKGDSSDNIPG----V 194
Query: 275 PGFGRKTALKLLKKHGSLENL 295
PG G KTA KLL+ +G+LE +
Sbjct: 195 PGIGDKTAAKLLQTYGNLEGI 215
>gi|423333996|ref|ZP_17311777.1| DNA polymerase I [Parabacteroides distasonis CL03T12C09]
gi|409226145|gb|EKN19055.1| DNA polymerase I [Parabacteroides distasonis CL03T12C09]
Length = 921
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 62 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIMGVPEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 169 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 215
>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
Length = 896
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 122 VFDGEGGT-EHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
VFD +G T HRR P+YKAHR L + +I ++ N+P +
Sbjct: 71 VFDAKGPTFRHRR--YPAYKAHRPGMPEDLV-----------KQLGYIRQIITALNLPAL 117
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
++EG+EADD+IA L Q G R + S DKD L E V + P++D+ ++T +
Sbjct: 118 EMEGYEADDLIAALARQARAAGLRVEIISGDKDLLPLAQEGVTIWDPMKDV----YFTPQ 173
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
++ P + + LR + GD D +PG PG G KTALKL+ SL+NL A
Sbjct: 174 VIQEKFGLPPAALVDLRALTGDPSDNIPG----APGIGPKTALKLIGHFHSLDNLF--AH 227
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ V Q L + + +R + ++L L
Sbjct: 228 LDEVKEKKLQNRLRDYQEQVRLSRDLLRL 256
>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
gi|410102610|ref|ZP_11297536.1| DNA polymerase I [Parabacteroides sp. D25]
gi|409238682|gb|EKN31473.1| DNA polymerase I [Parabacteroides sp. D25]
Length = 921
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 62 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIMGVPEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 169 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 215
>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
18228]
gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
18228]
Length = 932
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIA---------VFDG 125
+++F LD L Y P + S G S V+ + V+ FD
Sbjct: 11 EKLFLLDAYALIYRAYYALIKSPRINSKGFNTSAILGFVNTLEDVLKKENPTHIGIAFDP 70
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R + P YKA R + + + S I D++ +P++++ G+
Sbjct: 71 AGPT-FRHEAYPEYKAQREE-----------TPEVIRLSVPIIKDIIRAYRIPILEVPGY 118
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI TL + ++G + +PDKD+ QL+ E+V + P + + ++ +
Sbjct: 119 EADDVIGTLATEAGKRGITTYMMTPDKDYGQLVGENVFMYRPRHNDKAFEVMGVEEVKNK 178
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y P + L ++GD D +PG PG G KTA KL+ + G++ENLL
Sbjct: 179 YAIQSPLQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLIAQFGNIENLL 226
>gi|399116301|emb|CCG19106.1| DNA polymerase I [Taylorella asinigenitalis 14/45]
Length = 908
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 23/185 (12%)
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVL 172
++ D + VFD G T R L YKAHR +L R ++ HQ I D L
Sbjct: 48 ITKPDFIACVFDAPGKT-FRHDLYKEYKAHRPAMPDEL-------RDQIESVHQAI-DAL 98
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD-L 231
G CN+ + G EADD+IATL + + V+A+ DKD QL++ +V+++ ++ L
Sbjct: 99 G-CNI--IMQSGVEADDIIATLADYATKNQIKTVIATGDKDIAQLVNSNVEIITGKEEIL 155
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
DR + +Y P + ++GD D +PG+ V P KTA K L+++G+
Sbjct: 156 DR------NGVLEKYGVYPEQIIDYLMLMGDSSDNIPGVDKVGP----KTASKWLQEYGT 205
Query: 292 LENLL 296
LENLL
Sbjct: 206 LENLL 210
>gi|365920203|ref|ZP_09444552.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
gi|364578420|gb|EHM55625.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
Length = 900
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 27/223 (12%)
Query: 84 FLDVNPLCYEGSRPS--LQSFGRWLSLFFDQVSHADPVIAV-FDGEGGTEHRRQLLPSYK 140
F + PL RP+ L + L+ +D H I V FD +G T R L P+YK
Sbjct: 23 FHGLPPLTTRDGRPTGALHGVVKMLAKLYD--DHQPAYIGVVFDAQGKT-FRHDLYPAYK 79
Query: 141 AHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQ 200
AHR L R ++ H+ I + LG P++ +G EADDVI TL Q L
Sbjct: 80 AHRPPMPDDL-------RAQIEPLHRLI-EALG---FPLIIEDGVEADDVIGTLAMQALA 128
Query: 201 KGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCD---PHSELSLR 257
+ Y+ V++S DKD QL+ V + L D + + T A++ D +
Sbjct: 129 RHYQVVISSGDKDMTQLL---VHADITLLDTMKNAITTADDVAARFKVDALRADQVIDYL 185
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
+VGD D +PG VP G KTA K L ++G+++NL++ A+
Sbjct: 186 ALVGDSADNIPG----VPKVGPKTAAKWLAEYGNIDNLIDNAS 224
>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
gi|422337267|ref|ZP_16418238.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
gi|353345481|gb|EHB89773.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
Length = 985
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 80 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 137
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q Q G + +
Sbjct: 138 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGVEADDVIGTLACQASQSGQKVL 186
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 187 ISTGDKDMTQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 240
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 241 DNIPG----VSGVGEKTALGLLQGIGSMAQI 267
>gi|414165088|ref|ZP_11421335.1| DNA polymerase I [Afipia felis ATCC 53690]
gi|410882868|gb|EKS30708.1| DNA polymerase I [Afipia felis ATCC 53690]
Length = 1007
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD T R ++ P YKAHR L +F+ I + + ++P ++
Sbjct: 88 VFDRSEVT-FRNKIYPEYKAHRPPAPDDLIP--QFA---------LIREAVRAFDLPCLE 135
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT V Q ++G A + S DKD QL+++ V + ++D +
Sbjct: 136 QIGFEADDLIATYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKD----RRLGIPE 191
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + ++ + GD VD VPG VPG G KTA +L+ ++G LE LL A
Sbjct: 192 VIEKFGVPPEKVVEVQALAGDSVDNVPG----VPGIGIKTAAQLITEYGDLETLLQRAG- 246
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +E+L +HA+ R + E++ L
Sbjct: 247 -EIKQPKRRESLIEHAEKARISRELVLL 273
>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
Length = 925
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 6 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 65
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 66 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 113
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 114 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIMGVPEVLNKY 172
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 173 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 219
>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
Length = 921
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 62 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIMGVPEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 169 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 215
>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
gi|379747708|ref|YP_005338529.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
gi|379755010|ref|YP_005343682.1| DNA polymerase I [Mycobacterium intracellulare MOTT-02]
gi|379762501|ref|YP_005348898.1| DNA polymerase I [Mycobacterium intracellulare MOTT-64]
gi|378800072|gb|AFC44208.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
gi|378805226|gb|AFC49361.1| DNA polymerase I [Mycobacterium intracellulare MOTT-02]
gi|378810443|gb|AFC54577.1| DNA polymerase I [Mycobacterium intracellulare MOTT-64]
Length = 908
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VL + V+
Sbjct: 66 RDEAPTHIAAAFDVSRQTFRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 125
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+SE+V ++ P + + + +T +
Sbjct: 126 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSENVTVLYPRKGVSELTRFTPDAVV 185
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 186 EKYGLTPTQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIGEYGSLQALVDNVDSVR 241
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 242 GKVG-----DALREHLASVIRNRELTDL 264
>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
Length = 921
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 62 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIMGVPEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 169 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 215
>gi|379713403|ref|YP_005301741.1| DNA polymerase I [Rickettsia massiliae str. AZT80]
gi|376334049|gb|AFB31281.1| DNA polymerase I [Rickettsia massiliae str. AZT80]
Length = 875
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD GG R Q+ P YKA+R L R DV N P
Sbjct: 56 VAVVFDS-GGKNFRHQIYPDYKANRPPPPEDLIVQLPLVR-----------DVASNLNFP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ G+EADD+IAT + G V+ S DKD QL++E +++ PL + + T
Sbjct: 104 ILEKNGYEADDIIATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPL----KGKYIT 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ + ++GD D +PG VP G KTA L+ + GS+EN+ N+
Sbjct: 160 EDDVVKKFGTTSDKLREVMALIGDRSDNIPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
Length = 950
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 102/234 (43%), Gaps = 35/234 (14%)
Query: 102 FGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFS 157
F LS D H D + FD +GGT R +LP YK R L QL QR
Sbjct: 51 FATMLSQVID-TEHPDHLAVAFDVKGGT-FRNMMLPQYKGTRDAAPEDLLSQLPLIQR-- 106
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
+L LG V ++ G+E DDVI TL + GYR +V S D+D QL
Sbjct: 107 ----------MLSALG---VTYIEQPGYEGDDVIGTLATMGDKAGYRTLVLSGDRDAFQL 153
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
I++++ ++ P T + +Y+ P L + G+ D +PG VPG
Sbjct: 154 INDNITVLYPGHHFKDLKHMTSDAVVEKYHVTPEQYPDLAALRGETADNIPG----VPGV 209
Query: 278 GRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
G A K + ++G L+ ++ ++A E K + LR N E + L R
Sbjct: 210 GDGFAAKWINQYGGLDQII----------EHADEITGKKGEALRENIEQVKLNR 253
>gi|406031212|ref|YP_006730103.1| DNA polymerase I [Mycobacterium indicus pranii MTCC 9506]
gi|405129759|gb|AFS15014.1| DNA polymerase I [Mycobacterium indicus pranii MTCC 9506]
Length = 908
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VL + V+
Sbjct: 66 RDEAPTHIAAAFDVSRQTFRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 125
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+SE+V ++ P + + + +T +
Sbjct: 126 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSENVTVLYPRKGVSELTRFTPDAVV 185
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 186 EKYGLTPTQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIGEYGSLQALVDNVDSVR 241
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 242 GKVG-----DALREHLASVIRNRELTDL 264
>gi|386390037|ref|ZP_10074834.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
gi|385694079|gb|EIG24705.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
Length = 950
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G +++ +S +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNQEGEPTGAMYG-VVNMLKSLISQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q ++G +
Sbjct: 85 PDEL-------RSQIQPLHA-IIKALG---IPLISVEGVEADDVIGTLAVQAAKEGKHVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNNHIMLINTMNNTLLDR------EGVIEKYGIPPELVIDWLALQGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GS++ +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSIKTI 214
>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 1016
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 84 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 131
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+G EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 132 TQGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 187
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 188 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 243
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 244 IKQVKR---RETILANIDMARLSRDLVRLR 270
>gi|363899187|ref|ZP_09325698.1| hypothetical protein HMPREF9625_00358 [Oribacterium sp. ACB1]
gi|395209333|ref|ZP_10398427.1| DNA-directed DNA polymerase [Oribacterium sp. ACB8]
gi|361959517|gb|EHL12804.1| hypothetical protein HMPREF9625_00358 [Oribacterium sp. ACB1]
gi|394704964|gb|EJF12493.1| DNA-directed DNA polymerase [Oribacterium sp. ACB8]
Length = 864
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 23/221 (10%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVS--HADPVIAVFDGEGGTEHRRQLLPSYKA 141
F V L + P+ FG +L++ F ++ AD V FD T R ++ YK
Sbjct: 19 FYGVPILSNKEGVPTNGVFG-FLNILFKEIELEEADHVAIAFDMPVPT-FRHKMFSDYKG 76
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
R+ +L + + ++L NVP++ +EG+EADD++ T+ ++ +
Sbjct: 77 TRKSMPEELK-----------QQVPILQELLTAMNVPILTLEGYEADDILGTVAKRMQGE 125
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQ---DLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
G + S D+D QL E +++ +P + + +++Y K A++ P + L+
Sbjct: 126 GKEVTIVSGDRDLLQLSDEHIKISLPKTAKGETNIYNYYP-KDVEAEWGVSPKEFIDLKA 184
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++GD D +PG VPG G KTA ++ K+ S+EN L+ A
Sbjct: 185 LMGDSSDNIPG----VPGMGEKTATWIIAKYHSIENALSHA 221
>gi|418464049|ref|ZP_13034991.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757390|gb|EHK91544.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 932
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
Length = 1020
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD T R +L P+YKAHR L +F+ I + + ++P ++
Sbjct: 90 VFDKSEVT-FRNKLYPAYKAHRPPAPDDLI--PQFA---------LIREAVKAFDLPCLE 137
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT V Q ++G A + S DKD QL+++ V + ++D +
Sbjct: 138 QAGFEADDLIATYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKD----RRLGIPE 193
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + ++ + GD VD VPG VPG G KTA +L+ ++G L+ LL AA
Sbjct: 194 VIEKFGVPPDKVIEVQALAGDSVDNVPG----VPGIGVKTAAQLITEYGDLDTLLARAA- 248
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +EAL ++A+ R + +++ L
Sbjct: 249 -EIKQPKRREALIENAEKARISRQLVLL 275
>gi|416892197|ref|ZP_11923627.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
gi|347814961|gb|EGY31605.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
Length = 458
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 31/250 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 71 PLTNSNGEPTGAMYGV-LNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 128
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q Q G + +
Sbjct: 129 PDDL-------RKQIQPLH----DMVRALGIPLLVVEGVEADDVIGTLARQASQNGQKVL 177
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 178 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 231
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSL----ENLLNAAAVRTVGRDYAQEALTKHADYL 320
D +PG V G G KTAL LL+ GS+ NL A + G E L D
Sbjct: 232 DNIPG----VSGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKDMA 287
Query: 321 RRNYEVLALR 330
+Y + ++
Sbjct: 288 DLSYALATIK 297
>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
Length = 852
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 22/205 (10%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD + E R+++ P+YKAHR L +F+ I V+ N+PV+++
Sbjct: 18 FDKDSRAE-RQKIDPNYKAHREGPPEDLVP--QFA---------LIRKVVEALNLPVLEV 65
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
G EADDVI TL + +G+ V + DKDF Q++ EDV+L P++D+ +
Sbjct: 66 PGWEADDVIGTLAARAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAEVKE-- 123
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVR 302
+ +P ++GD VD VP VPG G KTA LL++ G ++ +L A +
Sbjct: 124 --RLGIEPRQMRDYLSLIGDAVDNVPK----VPGIGDKTAAALLQQFGDVDTML--ARLD 175
Query: 303 TVGRDYAQEALTKHADYLRRNYEVL 327
V + +EA++ H + L R +++
Sbjct: 176 EVKKPKIREAISSHRESLLRARQLV 200
>gi|392425101|ref|YP_006466095.1| DNA polymerase I [Desulfosporosinus acidiphilus SJ4]
gi|391355064|gb|AFM40763.1| DNA polymerase I [Desulfosporosinus acidiphilus SJ4]
Length = 877
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 25/236 (10%)
Query: 90 LCYEGSRPS--LQSFGRWLSLFF--DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRK 145
L RP+ LQ F L++ F +Q H D + FD T R + YKA R++
Sbjct: 23 LTTSDGRPTNVLQGF---LTMLFRLEQEQHPDYWVVAFDKTKAT-IRIEQYAGYKAQRKE 78
Query: 146 FLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRA 205
L F+ ++L + +VP++++ G+EADD+IA + Q +G
Sbjct: 79 TPEGLRPQ-----------FDFLKEILAELDVPMLELAGYEADDLIAAVTKQAEAQGMEV 127
Query: 206 VVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVD 265
V + D+D QLIS + + + + Y +Y P + L+ ++GD D
Sbjct: 128 QVYTGDRDALQLISPKTHIYLTKKGISEVECYDEHALWERYQLRPLQIIDLKGLMGDTSD 187
Query: 266 GVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLR 321
+PG VPG G KTALKLL ++ ++E +L A A + G+ Q L ++AD R
Sbjct: 188 NIPG----VPGIGEKTALKLLWEYETVEGVL-ANAEKVSGKKL-QSNLKEYADQAR 237
>gi|337278920|ref|YP_004618391.1| DNA polymerase I [Ramlibacter tataouinensis TTB310]
gi|334729996|gb|AEG92372.1| Candidate DNA polymerase I [Ramlibacter tataouinensis TTB310]
Length = 954
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 27/218 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD G T R L P YKA+R L R ++ H+ ++ +LG
Sbjct: 78 ADYAACVFDAPGKT-FRDDLYPGYKANRSAMPDDL-------RAQIEPIHE-VVRLLG-- 126
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
V+ + G EADDVI TL ++G V++S DKD QL+++ V+++ + D R
Sbjct: 127 -WKVLNVPGVEADDVIGTLSCMATERGIHTVISSGDKDLSQLVNDHVKVIDTMNDKVR-- 183
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG+ V P KTA+KLL+++GSL+ L
Sbjct: 184 --DVAGVEAEFGVPPRLMVDYQVLVGDSVDNVPGVDKVGP----KTAVKLLQEYGSLDAL 237
Query: 296 LN-AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ AA V+ VG E L K +L E+L +R+
Sbjct: 238 VERAAEVKGAVG-----ENLRKALPWLPTGRELLTIRK 270
>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
gi|14916559|sp|Q9RAA9.1|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
Length = 922
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FASMLLKLLSDFKPKHVAVVFDS-GGKNFRHHIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLVVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFAAKTAALGEDVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
V S DKD QL+ E++++ PL + + T + ++ + ++GD D
Sbjct: 132 VISSDKDLLQLMGENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|410696876|gb|AFV75944.1| DNA polymerase I [Thermus oshimai JL-2]
Length = 830
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
I VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 59 AIVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGL 105
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G EADDV+ATL + ++GY + S D+D QL+S+ + L+ P ++
Sbjct: 106 VRL---EVPGFEADDVLATLAKKAEREGYEVRILSADRDLYQLLSDRIHLLHPEGEV--- 159
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG VPG G KTALKLLK+ SLE
Sbjct: 160 --LTPRWLQERYGLSPERWVEYRALVGDPSDNLPG----VPGIGEKTALKLLKEWDSLEA 213
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+L + V + +EA+ + D L+ + E+ LR
Sbjct: 214 ILK--NLDQVKPERVREAIRNNLDKLQMSLELSRLR 247
>gi|387876361|ref|YP_006306665.1| DNA polymerase I [Mycobacterium sp. MOTT36Y]
gi|443306118|ref|ZP_21035906.1| DNA polymerase I [Mycobacterium sp. H4Y]
gi|386789819|gb|AFJ35938.1| DNA polymerase I [Mycobacterium sp. MOTT36Y]
gi|442767682|gb|ELR85676.1| DNA polymerase I [Mycobacterium sp. H4Y]
Length = 886
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VL + V+
Sbjct: 44 RDEAPTHIAAAFDVSRQTFRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 103
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+SE+V ++ P + + + +T +
Sbjct: 104 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSENVTVLYPRKGVSELTRFTPDAVV 163
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 164 EKYGLTPTQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIGEYGSLQALVDNVDSVR 219
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 220 GKVG-----DALREHLASVIRNRELTDL 242
>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
Length = 930
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 20/179 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC-NVPVV 180
VFD TE R ++ P YKA+R + L RS LD + + ++PV+
Sbjct: 58 VFDTSAPTE-RHRIHPEYKANREEMPEDL------------RSAMPHLDRIAEAFDIPVL 104
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAV-VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
K++G+EADD+I TL + +G+ + + +PDKDF QL++E +++ P + D +
Sbjct: 105 KLDGYEADDIIGTLAHRAEAEGFDEIYMVTPDKDFGQLVTERIKMYRPGRKGDGAEILGV 164
Query: 240 KHYIAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
A++ + + + + GD VD +PG VPG G KTA KLL K+ ++E LL+
Sbjct: 165 DEVKAKWGIARVDQVIDMLGLCGDSVDNIPG----VPGIGPKTAEKLLAKYDTVEGLLD 219
>gi|408356302|ref|YP_006844833.1| DNA polymerase I [Amphibacillus xylanus NBRC 15112]
gi|407727073|dbj|BAM47071.1| DNA polymerase I [Amphibacillus xylanus NBRC 15112]
Length = 880
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 34/232 (14%)
Query: 79 KKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFDG 125
K+++ +D N + Y + P L + F + L ++ S + +IA FD
Sbjct: 4 KQKLILIDGNSILYRAFFALPLLSNDKGVYTNAVFGFTKMLMKVLEEESPSHIMIA-FDA 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVKIE 183
G T R YK R+K +L S QF+L ++L ++ ++E
Sbjct: 63 -GKTTFRHAKYKDYKGGRQKTPPEL-------------SEQFLLVRELLDASSIVHYELE 108
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
+EADD+I TL + Q + V + DKD QL+SEDV + + + + YT +
Sbjct: 109 QYEADDIIGTLAKKAAQANFNVQVITGDKDMLQLVSEDVHVQITRKGISELDIYTPEFLE 168
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ P + ++ ++GD D +PG V G G KTA+KLL + G+LEN+
Sbjct: 169 EKLTIKPEQVIDMKALMGDSSDNIPG----VTGVGEKTAIKLLNQFGTLENI 216
>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
Length = 880
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 78 SKKRVFFLDVNPL---CYEGSRPSLQSFGR-------WLSLFFDQVSHADP--VIAVFDG 125
SK+++ LD N L + P S G ++++ +P ++ FD
Sbjct: 2 SKEKLLILDGNSLMNRAFYALPPLTNSQGLHTNGVYGFVTMLLKMREEINPNYIVCTFDR 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKIE 183
T R YKA R++ +L + QF + +L ++ + +I+
Sbjct: 62 SAPT-FRHNEYKDYKAGRKRMPEEL-------------AEQFPVVKKLLNMLSISMFEID 107
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+I TL +K + + DKD QL +++V++V+ + + Y I
Sbjct: 108 GFEADDLIGTLSVYAEKKDIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMI 167
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+++ P + ++ ++GD D +PG VPG G KTA KL+K++GS+EN+LN
Sbjct: 168 SEFEVTPTQFIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIKEYGSIENVLN 217
>gi|383456916|ref|YP_005370905.1| DNA polymerase I [Corallococcus coralloides DSM 2259]
gi|380733938|gb|AFE09940.1| DNA polymerase I [Corallococcus coralloides DSM 2259]
Length = 901
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V FD G E R+++ P+YKA+R+ LT R +VG DVL N+P
Sbjct: 62 VALAFDKSGRVE-RQKIDPTYKANRKAPPEDLTPQFPLIR-KVG-------DVL---NLP 109
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ EG EADDVI TL Q +G++ +V + DKDF Q++ ED+ L P ++ R
Sbjct: 110 SLDAEGWEADDVIGTLAMQAKAEGFQVLVVTSDKDFMQIVDEDITLFDPAKN-KRMGIAD 168
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
++ + P +VGD VD V VPG G KTA++LL + G +E LL
Sbjct: 169 VQE---KMGILPGQVRDFLALVGDAVDNVAK----VPGVGDKTAVELLHQFGDVETLL-- 219
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVL 327
A V V + + AL H + L R +++
Sbjct: 220 ARVEEVKKPKIRAALESHRESLTRAKQLV 248
>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Microbacterium testaceum StLB037]
gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Microbacterium testaceum StLB037]
Length = 879
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 24/223 (10%)
Query: 105 WLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGR 163
+LS+F + V P +AV R + YKA+R + + +G++
Sbjct: 44 FLSMFVNLVKAEKPTHLAVAFDTSRQSFRTREYAEYKANRSESPAEF-------KGQI-- 94
Query: 164 SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + L VPV+K E EADD++ATL Q +G++ +V S D+D QL+++D+
Sbjct: 95 --PLLQECLEAMGVPVLKKEDFEADDILATLATQGEAQGFQVLVCSGDRDTIQLVTDDIT 152
Query: 224 LVMP-LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
L+ P +Q + + Y I +Y P + +VG+ D +PG VP G KTA
Sbjct: 153 LLYPNVQGVSQLKRYDTAAVIEKYGLPPEQYPDIAALVGETSDNLPG----VPKVGEKTA 208
Query: 283 LKLLKKHGSLENLLNAAAVRT--VGRDYAQEALTKHADYLRRN 323
+K L + GSL+ LL A T VG + L +H D +RRN
Sbjct: 209 VKWLTQWGSLDALLENADKVTGVVGNN-----LREHLDGVRRN 246
>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
Length = 962
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 32/240 (13%)
Query: 79 KKRVFFLDVNPLCYEG-----SRPSLQSFGR-------WLSLFFDQVSHADPV-IAV-FD 124
+K++F LD L + P + S GR + + D +++ P +AV FD
Sbjct: 2 QKKLFLLDAFALVFRAYYALIRNPRITSKGRNTNAQFGFTNTLVDLINNQKPTHMAVCFD 61
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
TE R YKA+R++ + A+ I ++ N+PV+ I+G
Sbjct: 62 THALTE-RHTDFADYKANRQETPEDILAAV-----------PDIKKIIEALNIPVIAIDG 109
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADDVI L Q GY + +PDKD+ QL++E +++ P K
Sbjct: 110 YEADDVIGALARQAELAGYDVYMVTPDKDYGQLVTEKIKIYKPPYQGGSIEIMGPKEVCE 169
Query: 245 QYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
++ S+ + + ++GD VD +PGI+ G G KTA KLL ++ +LEN+L NA ++
Sbjct: 170 KWGIKNVSQVIDILGLMGDAVDNIPGIR----GVGEKTAAKLLAEYETLENILANADTIK 225
>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
gi|417973867|ref|ZP_12614701.1| DNA polymerase I [Lactobacillus ruminis ATCC 25644]
gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
gi|346329738|gb|EGX98023.1| DNA polymerase I [Lactobacillus ruminis ATCC 25644]
Length = 885
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 17/195 (8%)
Query: 101 SFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGR 160
SF R L D V + D ++ FD G R + YKA R+K +L S++F +
Sbjct: 43 SFKRMLDKILDDV-NPDKILVAFDA-GKKTFRTEKYSDYKAGRKKTPEEL--SEQFPYVK 98
Query: 161 VGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
+LD G + +++ +EADD+I T+ + + GY + + D+D QL++
Sbjct: 99 K------LLDCYG---IKHYELKNYEADDIIGTMSKEAEKHGYETTIVTGDRDLTQLVTN 149
Query: 221 DVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280
+ + ++ + +YT H + P L+ + GD D PG+ V G K
Sbjct: 150 QTTVALTVKGVTEIEYYTPNHLSEKLGISPSQITDLKGLAGDASDNYPGVSKV----GEK 205
Query: 281 TALKLLKKHGSLENL 295
TALKLL ++G++ENL
Sbjct: 206 TALKLLNQYGTIENL 220
>gi|333990442|ref|YP_004523056.1| DNA polymerase I PolA [Mycobacterium sp. JDM601]
gi|333486410|gb|AEF35802.1| DNA polymerase I PolA [Mycobacterium sp. JDM601]
Length = 912
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 32/242 (13%)
Query: 71 NGLEKTKSKKRVFFLDVNPLCYEG----------SRPSLQS---FGRWLSLFFDQVSHAD 117
+ ++T++K + LD N L Y +R L + +G + ++ + +
Sbjct: 10 DAAQETQTKPTLLLLDGNSLAYRAFYALPAENFKTRSGLTTNAVYG-FTAMLINLLRDET 68
Query: 118 P--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
P V A FD T R + P YKA R + RG++ +VL
Sbjct: 69 PTHVAAAFDVSRQT-FRSERYPEYKATRSSTPDEF-------RGQI----DITKEVLNAL 116
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
+ + G+EADD+IATL Q +GYR +V + D+D QL++++V ++ P + + +
Sbjct: 117 GITTLSEPGYEADDLIATLATQADGEGYRVLVVTGDRDALQLVNDNVTVLYPRKGVSELT 176
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+T + +Y P + GD D +PGI PG G KTA K + ++GSLE L
Sbjct: 177 RFTPDAVLEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYGSLEGL 232
Query: 296 LN 297
++
Sbjct: 233 VD 234
>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
Length = 899
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 25/220 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
V+ V D G R ++ P+YKA+R + L QF L +V
Sbjct: 53 VVLVMDA-GRKSFRNEIDPAYKANRPEAPDDLQV-------------QFPLVREVADALA 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
VP ++ G EADDVIATL + ++G+ VV + DKDF QL+ E + L P+ +
Sbjct: 99 VPRIEEPGVEADDVIATLASRAREQGWEVVVVTGDKDFGQLVDERLSLYDPMAEASGRGG 158
Query: 237 YTLKHYIA-QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+T + + P + I+GD +D VPGI PG G TA L++ G++E +
Sbjct: 159 WTGPGEVEKKLGVRPDQVIEYMAILGDKIDNVPGI----PGIGEVTAAALVRHFGTVEEM 214
Query: 296 L----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
L A + G + +E + + +R+N ++++LRR
Sbjct: 215 LRRPEEIKAALSRGGEKVKEKIVASEERIRKNRQLVSLRR 254
>gi|420241838|ref|ZP_14745936.1| DNA polymerase I [Rhizobium sp. CF080]
gi|398069376|gb|EJL60735.1| DNA polymerase I [Rhizobium sp. CF080]
Length = 996
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R++L +YKA+R +L I N+P ++
Sbjct: 67 IFDYSAKT-FRKELYDAYKANRSAPPEELVPQ-----------FGLIRQATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL++ +V + ++D +
Sbjct: 115 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQ----IGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAA 300
I ++ P + L+ +VGD VD VPGI PG G KTA +LL++ G L+ LL A
Sbjct: 171 VIEKWGVPPEKMIDLQAMVGDSVDNVPGI----PGIGPKTAAQLLEEFGDLDTLLARAGE 226
Query: 301 VRTVGRDYAQEALTKHADYLR 321
++ V R +E + +AD R
Sbjct: 227 IKQVKR---RENIVANADLAR 244
>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
Length = 727
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 35/238 (14%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTAS 153
++ F LS D H D + FD +GGT R +LP YK R L QL
Sbjct: 31 AVWGFATMLSQVID-TEHPDHLAVAFDVKGGT-FRNMMLPQYKGTRDAAPEDLLSQLPLI 88
Query: 154 QRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKD 213
QR +L LG V ++ G+E DDVI TL + GYR +V S D+D
Sbjct: 89 QR------------MLSALG---VTYIEQPGYEGDDVIGTLATMGDKAGYRTLVLSGDRD 133
Query: 214 FKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHV 273
QLI++++ ++ P T + +Y+ P L + G+ D +PG
Sbjct: 134 AFQLINDNITVLYPGHHFKDLKHMTSDAVVEKYHVTPEQYPDLAALRGETADNIPG---- 189
Query: 274 VPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
VPG G A K + ++G L+ ++ ++A E K + LR N E + L R
Sbjct: 190 VPGVGDGFAAKWINQYGGLDQII----------EHADEITGKKGEALRENIEQVKLNR 237
>gi|344171961|emb|CCA84587.1| DNA polymerase I (POL I) [Ralstonia syzygii R24]
Length = 944
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 24/180 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 108 VDGVEADDVIGTLTERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGV--- 164
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+A++ P + ++GD VD VPG VP G KTA+K L ++GSL+N++ A
Sbjct: 165 ---LAKFGVPPEKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLGEYGSLDNVIARA 217
>gi|385793571|ref|YP_005826547.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
Length = 897
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL + ++GY+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAKNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQIIDYLALMGDASDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
Length = 864
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP-VIAVFDGEGGTEHRRQLLPS 138
R F+ L V+ G + + +G ++S+ V P IAV G R ++ P
Sbjct: 4 RAFYALPVDKFSTSGGQHTNAVYG-FMSMMAALVGEEKPDSIAVAFDVGRKTFRTEMFPE 62
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YKA R +A + F +G+V I DVL K + + E EADD++ATL Q
Sbjct: 63 YKAQRE------SAPEEF-KGQV----TIIRDVLDKMGITTLSRENFEADDILATLATQA 111
Query: 199 LQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
Q + ++ + D+D+ QL+++ ++ P+Q + + +T + +Y P
Sbjct: 112 TQMDEFDTLIVTGDRDYLQLVNDSTTVLYPMQGVSKLHRFTPEAVEEKYGLTPQQYPDYA 171
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+ GD D +PG VP G KTALK + ++ L+NLLN A
Sbjct: 172 ALRGDTSDNLPG----VPKVGEKTALKWILQYEDLDNLLNHA 209
>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
Length = 921
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I +++ N+P++++ +E
Sbjct: 62 GPT-FRHEAFEQYKAQREE-----------TPEVIRQSVPIIKEIIEAYNIPILEVPRYE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + + + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEIIGVPEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + L ++GD D +PG PG G KTA KLL + GS+ENLL
Sbjct: 169 GLTSTEQVIDLLGLMGDASDNIPG----CPGVGEKTAQKLLTEFGSIENLL 215
>gi|424879511|ref|ZP_18303143.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
gi|392515874|gb|EIW40606.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
Length = 1016
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 84 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 131
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 132 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 187
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 188 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 243
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D + + +++ LR
Sbjct: 244 IKQVKR---RETILANIDMAKLSRDLVRLR 270
>gi|386398911|ref|ZP_10083689.1| DNA polymerase I [Bradyrhizobium sp. WSM1253]
gi|385739537|gb|EIG59733.1| DNA polymerase I [Bradyrhizobium sp. WSM1253]
Length = 1026
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 23/199 (11%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R ++ P YKAHR L +FS I + + ++P ++ G EADD+I
Sbjct: 113 RNKIYPEYKAHRAPAPDDLIP--QFS---------LIREAVRAFDLPCLEQVGFEADDLI 161
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
AT V Q ++G A + S DKD QL+++ V + ++D + I ++ P
Sbjct: 162 ATYVRQACERGASATIVSSDKDLMQLVTDCVTMYDTMKD----RRIGIPEVIEKFGVPPE 217
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRTVGRDYAQ 310
+ ++ + GD D VPG VPG G KTA +L+ ++G LE LL AA ++ R +
Sbjct: 218 KVVEVQALAGDSTDNVPG----VPGIGIKTAAQLIVEYGDLEQLLFRAAEIKQPKR---R 270
Query: 311 EALTKHADYLRRNYEVLAL 329
EAL +HA+ R + +++ L
Sbjct: 271 EALIEHAEKARISRQLVLL 289
>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
Length = 831
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKA 141
F + PL P+ +G +L++ F + P + FD T R + +YK
Sbjct: 17 FFALPPLKTTKGEPTGAVYG-FLTMLFRVIKDEKPEYLAVAFDISRKT-FRTEQFTAYKG 74
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCNVPVVKIEGHEADDVIATLVGQVL 199
HR++ +L QF L +VL NVP ++++G+EADD+I L
Sbjct: 75 HRKEAPDELVP-------------QFALVREVLKVLNVPYIELDGYEADDIIGHLSRAFA 121
Query: 200 QKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCI 259
+G+ V+ + D+D QL+ E + + + + L + Y P + ++ +
Sbjct: 122 GQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKGL 181
Query: 260 VGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+GD D +PG VPG G KTAL L+K +GS+E +L
Sbjct: 182 MGDPSDNIPG----VPGIGEKTALDLIKTYGSVEEVL 214
>gi|416052203|ref|ZP_11578105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992293|gb|EGY33702.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 933
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSL 292
D +PG V G G KTAL LL+ GS+
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSM 211
>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
Length = 928
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV +G R + YKA+R L I D ++P
Sbjct: 59 LAVILDKGSHTFRNDMYDQYKANRPPAPEDLVPQ-----------FPMIRDATRAFSLPC 107
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
++ +G+EADD+IA+ + G+ + S DKD QLI V + +++ R + Y +
Sbjct: 108 IEEDGYEADDIIASYTRAAVAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVM 167
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ P + ++GD VD VPGI PG G KTA KL+ ++G LE L+AA
Sbjct: 168 ----GKFGVQPEQLGDVLALMGDSVDNVPGI----PGIGPKTAAKLITEYGGLEAALDAA 219
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
++ + QE L HAD R + ++AL
Sbjct: 220 P--SMKKSKMQENLIAHADMARLSRRLVAL 247
>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
Length = 905
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R + P YKA+R +AS + +VG I ++L + V++ EG EADDVI
Sbjct: 80 RTEKFPEYKANR-------SASPDDFKSQVG----LIDELLAGLGITVIRKEGFEADDVI 128
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q GY + + D+D QL++E+V ++ P + + S +T +Y P
Sbjct: 129 ATLTTQAAADGYEVRILTGDRDSLQLVTENVTVLYPKRGVSDLSRFTPAAVEEKYELTPQ 188
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
+ GD D +P I PG G KTA K +++ GSL L+ A G+ A E
Sbjct: 189 QYPDFAALRGDPSDNLPNI----PGVGEKTAAKWIREFGSLTELIERAD-EVKGK--AGE 241
Query: 312 ALTKHADYLRRNYEVLAL 329
L H + +R N E+ L
Sbjct: 242 TLRAHLEQVRLNRELTEL 259
>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
Length = 897
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL + ++GY+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAKNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQIIDYLALMGDASDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
Length = 965
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ FG L++ ++ P + VFD +G T R +L YK+HR
Sbjct: 36 PLTNSLGEPTGAMFG-VLNMLKSLITQVQPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 93
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ IEG EADDVI TL Q G + +
Sbjct: 94 PDDL-------RKQIQPLH----DIIRALGIPLLSIEGVEADDVIGTLALQASSAGKKVL 142
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR + I +Y P + ++GD
Sbjct: 143 ISTGDKDMAQLVDDNIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALMGDSS 196
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PGI G G KTAL LL+ GS+ +
Sbjct: 197 DNIPGIS----GVGEKTALGLLQGIGSMAEI 223
>gi|340357418|ref|ZP_08680034.1| DNA-directed DNA polymerase I [Sporosarcina newyorkensis 2681]
gi|339617673|gb|EGQ22293.1| DNA-directed DNA polymerase I [Sporosarcina newyorkensis 2681]
Length = 874
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 30/231 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFD 124
+KK++ LD N L Y + P L + F L D V+ +D
Sbjct: 2 TKKKIVLLDGNSLAYRAFFALPLLTNDKGIHTNAVYGFTMMLETILDN-EKPTHVLVAWD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
G T R YK R+K +L S++F +I ++ + +++
Sbjct: 61 A-GKTTFRHSTFTEYKGGRQKTPPEL--SEQFP---------YIRKLIEAFGIEQYELDL 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL + + V+ S DKD QL +E + + + + YT +H
Sbjct: 109 YEADDIIGTLSRECSEAKAEVVIISGDKDLTQLANEQTTVCITRKGITDLEKYTPQHIEE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+Y +P + ++ ++GD D +PG VPG G KTALKLLK++GS+EN+
Sbjct: 169 KYGIEPLQIIDMKGLMGDASDNIPG----VPGIGEKTALKLLKEYGSVENV 215
>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
Length = 875
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 96 RPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
RP+ FG L F ++ D +I FD G R + L YK+ R L
Sbjct: 31 RPTNAVFGFIAMLLKFIDIASPDALICAFDA-GRPAFRMEALEQYKSQRPPMDDDLKV-- 87
Query: 155 RFSRGRVGRSHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDK 212
QF I ++L NVPVV+I+G E DDV+ T+ + + GY ++ + DK
Sbjct: 88 -----------QFPIIEELLEAMNVPVVRIKGWEGDDVLGTIAARDEELGYETLLVTGDK 136
Query: 213 DFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQH 272
D QL ++ ++V + + + Y + +Y P + + GD D +PG
Sbjct: 137 DAYQLATDMTRIVTTKKGITDVAIYGPAEVLERYGVRPDQFIDFLGLKGDSSDNIPG--- 193
Query: 273 VVPGFGRKTALKLLKKHGSLENL 295
VPG G KTA KLL+ +GSLE +
Sbjct: 194 -VPGIGDKTAAKLLQTYGSLEGI 215
>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
Length = 906
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 117/249 (46%), Gaps = 23/249 (9%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLP 137
R FF L V +P+ +G + S+ + + P V FD T R +
Sbjct: 32 RAFFALPVENFSTTDGQPTNAVYG-FTSMLINVLRDEQPTHVAVAFDRSEPT-FRHEQYA 89
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQ 197
YKA R K A F R +V I +VL +P + + G+EADD+IATL Q
Sbjct: 90 DYKAGRAK------APDEF-RSQV----SLIFEVLDALRIPRLSVPGYEADDIIATLASQ 138
Query: 198 VLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
+G + +V + D+D QL++E V ++ P++ + Y +Y P L
Sbjct: 139 ASAQGMQTLVVTGDRDAFQLVNEHVTVLYPVRGVSELVRYDPAKVAEKYGVPPERYRELA 198
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHA 317
+VG+ D +PG VPG G KTA K L ++G L+ L+ A + G+ A AL +H
Sbjct: 199 ALVGETSDNLPG----VPGVGPKTAAKWLTQYGDLDGLVRNAD-KLKGK--AGAALREHL 251
Query: 318 DYLRRNYEV 326
+ RN+++
Sbjct: 252 PQVLRNHQI 260
>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
Length = 931
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ HQ V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLHQ----VIKAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q+G ++++ DKD QL+ +++ L+ + + +DR
Sbjct: 103 GLPLIAIEGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLS 212
Query: 294 NLLN 297
L +
Sbjct: 213 QLYD 216
>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
Length = 931
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ HQ V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLHQ----VIKAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ IEG EADDVI TL Q Q+G ++++ DKD QL+ +++ L+ + + +DR
Sbjct: 103 GLPLIAIEGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLS 212
Query: 294 NLLN 297
L +
Sbjct: 213 QLYD 216
>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
gi|123388086|sp|Q1RH76.1|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
Length = 871
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD GG R ++ P YKA+R L A R DV N P+++
Sbjct: 59 VFDS-GGKNFRHEIYPEYKANRPPPPEDLIAQLPLVR-----------DVARNLNFPILE 106
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT + G VV S DKD QL++++V++ PL + + T +
Sbjct: 107 KNGFEADDIIATFAAKTASIGEEVVVISSDKDLLQLMNDNVKIYDPL----KAKYITEDN 162
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ + ++GD D +PG VP G KTA L+ + G++EN+ N+
Sbjct: 163 VVEKFGVTSDKLREVMALIGDKSDNIPG----VPSIGPKTASSLITQFGTVENIFNS 215
>gi|422006555|ref|ZP_16353544.1| DNA polymerase I [Providencia rettgeri Dmel1]
gi|414098771|gb|EKT60416.1| DNA polymerase I [Providencia rettgeri Dmel1]
Length = 930
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYKPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + + +G +P++ + G EADDVI TL + +KG +
Sbjct: 85 PDDL-------RAQIAPLHEMV-EAMG---LPLLVVSGVEADDVIGTLACEASRKGMPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMNN----TILGPDEVKEKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+PG VPG G KTAL LL+ GSLE + N
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLEAIYN 216
>gi|402496809|ref|YP_006556069.1| DNA polymerase I [Wolbachia endosymbiont of Onchocerca ochengi]
gi|398650082|emb|CCF78252.1| DNA polymerase I [Wolbachia endosymbiont of Onchocerca ochengi]
Length = 862
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 109/215 (50%), Gaps = 23/215 (10%)
Query: 105 WLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRS 164
+L++ ++++D + FD G R P YKA+R + LT R
Sbjct: 39 FLNMILKYITYSDYLTIAFDS-GKKNFRHDSYPEYKANRITPPKDLTLQFAILR------ 91
Query: 165 HQFILDVLGKCNVPVVKIEGHEADDVIATL-VGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + N+ +IEG+EADD+IATL + ++ ++ VV S DKD QL++ ++
Sbjct: 92 -----EAVEAFNLSYEEIEGYEADDIIATLAIKYANRQDFKVVVVSSDKDLFQLLNYNIL 146
Query: 224 LVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTAL 283
+ P++++ + K I ++ + + L L + GD D +PGI PG G KTA+
Sbjct: 147 IFDPIKNI----YINEKQVIEKFGVNSNRLLDLFSLTGDASDNIPGI----PGIGPKTAV 198
Query: 284 KLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
KLL + SL+N++ A + + + ++ T+H +
Sbjct: 199 KLLDEFDSLDNIM--ANISCIKQVRIRDIFTEHKE 231
>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
Length = 875
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 96 RPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
RP+ FG L F ++ D +I FD G R + L YK+ R L
Sbjct: 31 RPTNAVFGFIAMLLKFIDIASPDALICAFDA-GRPAFRMEALEQYKSQRPPMDDDLKV-- 87
Query: 155 RFSRGRVGRSHQF--ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDK 212
QF I ++L NVPVV+I+G E DDV+ T+ + + GY ++ + DK
Sbjct: 88 -----------QFPIIEELLEAMNVPVVRIKGWEGDDVLGTIAARDEELGYETLLVTGDK 136
Query: 213 DFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQH 272
D QL ++ ++V + + + Y + +Y P + + GD D +PG
Sbjct: 137 DAYQLATDMTRIVTTKKGITDVAIYGPAEVLERYGVRPDQFIDFLGLKGDSSDNIPG--- 193
Query: 273 VVPGFGRKTALKLLKKHGSLENL 295
VPG G KTA KLL+ +GSLE +
Sbjct: 194 -VPGIGDKTAAKLLQTYGSLEGI 215
>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
Length = 873
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 19/168 (11%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
I ++L N+PV+ +EG+EADD++ T+ + GY V+ S D+D QL E +++ +P
Sbjct: 90 IKEILASMNIPVITLEGYEADDILGTVGKKAQSLGYNVVILSGDRDLLQLADEHIKIRLP 149
Query: 228 --LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
++ Y + + +Y P + L+ ++GD D +PG VPG G KTA+ +
Sbjct: 150 KTIKGRTEIENYYPEDVMEKYMATPSEFIDLKALMGDSSDNIPG----VPGIGEKTAMSI 205
Query: 286 LKKHGSLENLLNAAAVRTVGRDYAQEALT--KHADYLRRNYEVLALRR 331
+ K+ S+EN E LT K + LR NY++ L +
Sbjct: 206 ISKYHSIENAYEHV-----------EELTPAKAKNSLRENYDLAKLSK 242
>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
gi|384463265|ref|YP_005675860.1| DNA polymerase I [Clostridium botulinum F str. 230613]
gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
Length = 875
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F I ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IIKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL ++ V++V+ + + Y +
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDSVKVVITKKGITEKEIYDKNRMVE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVF 216
>gi|423301030|ref|ZP_17279054.1| DNA polymerase I [Bacteroides finegoldii CL09T03C10]
gi|408472365|gb|EKJ90893.1| DNA polymerase I [Bacteroides finegoldii CL09T03C10]
Length = 930
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 14/225 (6%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHR 132
S ++F LD L Y P + S G S V+ + V+ E T
Sbjct: 3 SDNKLFLLDAYALIYRAYYAFIKTPRINSKGFNTSAILGFVNTLEEVLK---KENPTHIG 59
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIA 192
PS R + Q A + + + S I D++ +P++++ G+EADDVI
Sbjct: 60 VAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADDVIG 119
Query: 193 TLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCD-PH 251
TL + ++G + +PDKD+ QL+S+ V + P + + ++ A+++ P
Sbjct: 120 TLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRP-KHTGGFEVMGMEEVKAKFDIKFPA 178
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + ++GD D +PG PG G KTA KL+ K GS+ENLL
Sbjct: 179 QVIDMLGLMGDSSDNIPG----CPGVGEKTAQKLIAKFGSIENLL 219
>gi|424889177|ref|ZP_18312780.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174726|gb|EJC74770.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 999
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 115 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 171 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D + + +++ LR
Sbjct: 227 IKQVKR---RETILANIDMAKLSRDLVRLR 253
>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Pseudogulbenkiania ferrooxidans 2002]
gi|224604032|gb|EEG10206.1| DNA polymerase I [Pseudogulbenkiania ferrooxidans 2002]
Length = 887
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P YKA+R +L ASQ + + DV+ P++
Sbjct: 20 VFDAKGKT-FRDELYPDYKANRPSMPEEL-ASQITA----------VHDVVQASGWPILV 67
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL Q G + +V++ DKD QL+S V LV M + LD
Sbjct: 68 VDGVEADDVIGTLARQAEAAGMQVIVSTGDKDIAQLVSPVVTLVNTMTNETLDEGGVKE- 126
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
++ P + ++GD VD VPG+ P KTA+K L+++GSLE ++ NA
Sbjct: 127 -----KFGVPPGLIIDYLTLIGDKVDNVPGVDKCGP----KTAVKWLEQYGSLEAVMANA 177
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
AA+ D + AL D+L + E++ ++
Sbjct: 178 AAISGKVGDNLRAAL----DWLPKGRELITIK 205
>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
Length = 834
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLE+
Sbjct: 164 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLES 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>gi|387773168|ref|ZP_10128763.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
gi|386905208|gb|EIJ69979.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
Length = 950
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G +++ +S +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNREGEPTGAMYG-VVNMLKSLISQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
+L R ++ H I+ LG +P++ +EG EADDVI TL Q ++G +
Sbjct: 85 PDEL-------RSQIQPLHA-IIKALG---IPLISVEGVEADDVIGTLAVQAAKEGKHVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELVIDWLALQGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GS++ +
Sbjct: 188 DNIPGVK----GVGEKTALALLQGIGSIKTI 214
>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
Length = 902
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V VFD +G T R L +YKA+R + +L R ++ + + +++
Sbjct: 63 DYVAVVFDPKGKT-FRHDLYHTYKANRIEMPNEL-------RSQI----KPLFEIIRALG 110
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
P++ EG+EADDVIATL + +KG +V++ DKD Q+++E V LV + D
Sbjct: 111 FPLIIKEGYEADDVIATLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTD----RL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
K + ++ P + + GD D +PG VP G KTA+K L ++ S+ENL+
Sbjct: 167 LNSKGVLEKFGVPPEKIIDYLTLTGDTTDNIPG----VPKVGPKTAVKWLSQYDSVENLI 222
Query: 297 NAA 299
A
Sbjct: 223 KHA 225
>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
Length = 915
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 21/218 (9%)
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVS--HADPVIAVFDGEGGTEHRRQLLPS 138
R F + L P+ FG + S+ D + H D V+ FD G R +
Sbjct: 23 RAFHALPDTLATASGEPTNAVFG-FTSMLLDALRSYHPDYVVVSFDV--GRTFRHDRYEA 79
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YKAHR L R ++ R H+ VL N+PV EG+EADDVIATL
Sbjct: 80 YKAHRAPMPDDL-------RRQMERIHE----VLAALNIPVFTREGYEADDVIATLARLA 128
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMP-LQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
++ +V + D D QL V++++P Q + + + I +Y P +
Sbjct: 129 AERHMSVLVVTGDSDLLQLADGAVRIILPGRQRFGDYRVFDREAVIERYGFPPERIPEYK 188
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+VGD D +PG VPG G KTA L++ + SLE +
Sbjct: 189 ALVGDTSDNIPG----VPGIGAKTATALVQAYDSLEAM 222
>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
Length = 930
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYKPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + + +G +P++ + G EADDVI TL + +KG +
Sbjct: 85 PDDL-------RAQIAPLHEMV-EAMG---LPLLVVSGVEADDVIGTLACEASRKGMPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMNN----TILGPDEVKEKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+PG VPG G KTAL LL+ GSLE + N
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLEAIYN 216
>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
Length = 946
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R +L P+YK HR L R ++ H+ + P++
Sbjct: 62 VFDAKGKT-FRDELYPAYKEHRAPMPDDL-------RQQIEPIHEAVR----ALGWPILM 109
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 110 VDGVEADDVIGTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGV--- 166
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+A++ P + ++GD VD VPG VP G KTA+K L ++GSL++++ A
Sbjct: 167 ---LAKFGVPPGKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLGEYGSLDSVIARA 219
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 220 GEIKGV----VGENLRNTLDWLPKGRELLTVK 247
>gi|242036411|ref|XP_002465600.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
gi|241919454|gb|EER92598.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
Length = 421
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 21/227 (9%)
Query: 104 RWLSLFFDQV----SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRK---FLRQLTASQRF 156
+ LSL D + SHA VFD +G +PS + H K F L + +
Sbjct: 134 KALSLLLDMLEFIPSHA---AVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKS 190
Query: 157 SR----GRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDK 212
+R V + Q++ + ++ V+++ G EADDVI TL + GY+ + SPDK
Sbjct: 191 NRTPTPDTVVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVNSVSAGYKVRIVSPDK 250
Query: 213 DFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQ 271
DF Q++S ++L+ + ++ ++ +Y P + + + GD D +PG++
Sbjct: 251 DFFQILSPSLRLLRIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVE 310
Query: 272 HVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
G G A+KL+ K GSLENLL +V V D ++AL H++
Sbjct: 311 ----GIGDINAVKLITKFGSLENLLK--SVDEVEDDRIKQALISHSE 351
>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
gi|429246491|ref|ZP_19209809.1| DNA polymerase I [Clostridium botulinum CFSAN001628]
gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
gi|428756407|gb|EKX78961.1| DNA polymerase I [Clostridium botulinum CFSAN001628]
Length = 875
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D ++A FD + T R + YKA R+K +L +Q+F + ++L
Sbjct: 53 DYIVAAFDRKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALA 100
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ + +I+G EADD+I TL +KG + + DKD QL +++V++V+ + +
Sbjct: 101 INIFEIDGFEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEI 160
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y + ++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 161 YDKNRMMEEFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIETVL 216
>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
Length = 875
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS---------FGRWLSLFFDQVSHADP--VIAVFD 124
+K+R+ LD N L + P L + +G ++++ +P ++A FD
Sbjct: 2 NKERLLILDSNSLLNRAFYALPDLMTGEGIHTNAIYG-FVNMLLKMKEEINPDYIVAAFD 60
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
+ T R + YKA R+K +L +Q+F + ++L + + +I+G
Sbjct: 61 RKAPT-FRHEEYKDYKAGRKKMPEEL--AQQFP---------IVKELLSALAINIFEIDG 108
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I TL +KG + + DKD QL +++V++V+ + + Y +
Sbjct: 109 FEADDLIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVE 168
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++ S+E +L
Sbjct: 169 EFGVTPKEFIDVKGLMGDTSDNIPG----VPGIGEKTAFKLIKEYKSIEIVL 216
>gi|110636269|ref|YP_676477.1| DNA polymerase I [Chelativorans sp. BNC1]
gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
Length = 978
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ P YKA+R + L I + ++P ++
Sbjct: 67 IFDYSSKT-FRSKIYPEYKANRTEPPEDLIPQ-----------FGLIREATRAFDLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+EG+EADD+IAT V + G + S DKD QL+ V + P++D + +
Sbjct: 115 MEGYEADDLIATYARLVCEAGGDTTIISSDKDLMQLVGPTVSMYDPMKDKE----IRVPE 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
+ ++ P + L+ + GD +D VPG VPG G KTA +LL+++G L+ LL+ A
Sbjct: 171 VVEKWGVPPEKMIDLQALTGDTIDNVPG----VPGIGPKTAAQLLEEYGDLDTLLSRA-- 224
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ + +E L + A+ R + E++ L+
Sbjct: 225 HEIKQQKRRENLIEFAEKARISRELVRLK 253
>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
Length = 864
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R Q YKA+R + +L VG+ + +L N
Sbjct: 51 DYIAVAFDKKSPT-FRHQEFIEYKANRVRTPEEL----------VGQ-FDVLKQILKAMN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++I+G+EADD++ +L + + G ++ + DKD QL+S V +++ + +
Sbjct: 99 IRYIEIDGYEADDILGSLSKKAEEAGIFTLIVTGDKDTLQLVSPMVHVMLTRKGISEMEI 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y ++ P + ++ ++GD D +PGI PG G KTALKLL+++GSLEN+L
Sbjct: 159 YDPDKMAERFGIPPQAIPDMKGLMGDSSDNIPGI----PGVGEKTALKLLQEYGSLENIL 214
Query: 297 NAA 299
A
Sbjct: 215 ENA 217
>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
Length = 902
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V VFD +G T R L +YKA+R + +L R ++ + + +++
Sbjct: 63 DYVAVVFDPKGKT-FRHDLYHTYKANRIEMPNEL-------RSQI----KPLFEIIRALG 110
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
P++ EG+EADDVIATL + +KG +V++ DKD Q+++E V LV + D
Sbjct: 111 FPLIIKEGYEADDVIATLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTD----RL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
K + ++ P + + GD D +PG VP G KTA+K L ++ S+ENL+
Sbjct: 167 LNSKGVLEKFGVPPEKIIDYLTLTGDTTDNIPG----VPKVGPKTAVKWLSQYDSVENLI 222
Query: 297 NAA 299
A
Sbjct: 223 KHA 225
>gi|424665766|ref|ZP_18102802.1| DNA polymerase I [Bacteroides fragilis HMW 616]
gi|404574019|gb|EKA78770.1| DNA polymerase I [Bacteroides fragilis HMW 616]
Length = 935
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 13/222 (5%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQL 135
++F LD L Y P + S G S V+ + V+ E T
Sbjct: 6 KLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLK---KENPTHIGVAF 62
Query: 136 LPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLV 195
PS R + Q A + + + S I D++ +P++++ G+EADDVI TL
Sbjct: 63 DPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADDVIGTLA 122
Query: 196 GQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNC-DPHSEL 254
+ ++G + +PDKD+ QL+++ V + P + ++ A+++ P +
Sbjct: 123 TEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFDIQSPAQVI 182
Query: 255 SLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 183 DMLGLMGDSSDNIPG----CPGVGEKTAQKLIAEFGSIENLL 220
>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
Length = 904
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 21/229 (9%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
++S+ + + DP V FD T R Q+ P YKA R K + + F G+V
Sbjct: 43 FVSMLINLLRDEDPTHVAVAFDISRKT-FRSQMYPEYKATRSK------SPESFP-GQV- 93
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
I +VLG + EG+EADD+IAT Q Q+GY+ ++ + D+D QL++ D+
Sbjct: 94 ---DLIKEVLGALGIVWEAHEGYEADDIIATYATQGQQQGYQVLIMTGDRDALQLVTPDI 150
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P + + YT + +Y P + GD D +P I PG G KTA
Sbjct: 151 TVLYPNRGVSDLIRYTPEQVEEKYGLSPAQYPDFAALRGDPSDNLPKI----PGVGEKTA 206
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+K + SL LL A G+ +AL H D +RRN ++ L R
Sbjct: 207 SSWVKSYHSLAELLERAD-EVTGK--TGQALRDHLDQVRRNRQLTELVR 252
>gi|359769905|ref|ZP_09273651.1| DNA polymerase I [Gordonia polyisoprenivorans NBRC 16320]
gi|359312708|dbj|GAB26484.1| DNA polymerase I [Gordonia polyisoprenivorans NBRC 16320]
Length = 930
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 26/205 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG +
Sbjct: 90 IAAAFDVSRKT-FRSEMYPEYKAQRSK------SPDEFN-GQVDVTKE-VLDALG---IQ 137
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V I+G+EADD+IATL Q +G++ +V + D+D QL+ + V ++ P + + + +T
Sbjct: 138 VFAIDGYEADDIIATLATQAEAQGFKVLVVTGDRDSLQLVDDSVTVLYPRKGVSDLTRFT 197
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L+
Sbjct: 198 PEEVEKKYGLTPSQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLV-- 251
Query: 299 AAVRTVGRDYAQEALTKHADYLRRN 323
D+ + K D LR N
Sbjct: 252 --------DHVDQVKGKVGDALRAN 268
>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
Length = 913
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S R+ + RS +VL + V+
Sbjct: 71 RDEAPTHIAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 130
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S++V ++ P + + + +T + +
Sbjct: 131 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVV 190
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 191 EKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIAEYGSLQALVDNVDSVR 246
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 247 GKVG-----DALREHLASVIRNRELTDL 269
>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 854
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 27/206 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRR----KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
VFD G T R ++ YK R+ +F QL ++ +LG +
Sbjct: 58 VFDAPGKT-FRHEMFEEYKKGRKPTPEEFKVQLPILKK---------------MLGLLGI 101
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
PV+ G EADDVI + + KG +V + DKD Q++ E + ++ P + + ++ +
Sbjct: 102 PVICRPGVEADDVIGAVSREYAYKGTPVLVVTSDKDMLQILDEGITVIRPGKGISSFNRW 161
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ + +Y P +VGD VD VPG VPG G KTA +LL K+G LE +L
Sbjct: 162 DAETFQGEYGFPPARMADYLALVGDSVDNVPG----VPGIGDKTARRLLGKYGDLEGILA 217
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRN 323
A T G+ ++ L ++AD R++
Sbjct: 218 HTADLTAGQ---RKKLEENADLARKS 240
>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii Q321]
gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii Q321]
gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
Length = 902
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V VFD +G T R L +YKA+R + +L R ++ + + +++
Sbjct: 63 DYVAVVFDPKGKT-FRHDLYHTYKANRIEMPNEL-------RSQI----KPLFEIIRALG 110
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
P++ EG+EADDVIATL + +KG +V++ DKD Q+++E V LV + D
Sbjct: 111 FPLIIKEGYEADDVIATLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTD----RL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
K + ++ P + + GD D +PG VP G KTA+K L ++ S+ENL+
Sbjct: 167 LNSKGVLEKFGVPPEKIIDYLTLTGDTTDNIPG----VPKVGPKTAVKWLSQYDSVENLI 222
Query: 297 NAA 299
A
Sbjct: 223 KHA 225
>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
Length = 902
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V VFD +G T R L +YKA+R + +L R ++ + + +++
Sbjct: 63 DYVAVVFDPKGKT-FRHDLYHTYKANRIEMPNEL-------RSQI----KPLFEIIRALG 110
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
P++ EG+EADDVIATL + +KG +V++ DKD Q+++E V LV + D
Sbjct: 111 FPLIIKEGYEADDVIATLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTD----RL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
K + ++ P + + GD D +PG VP G KTA+K L ++ S+ENL+
Sbjct: 167 LNSKGVLEKFGVPPEKIIDYLTLTGDTTDNIPG----VPKVGPKTAVKWLSQYDSVENLI 222
Query: 297 NAA 299
A
Sbjct: 223 KHA 225
>gi|378718147|ref|YP_005283036.1| DNA polymerase I [Gordonia polyisoprenivorans VH2]
gi|375752850|gb|AFA73670.1| DNA polymerase I [Gordonia polyisoprenivorans VH2]
Length = 930
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+ S+ + + +P + A FD T R ++ P YKA R K + F+ G+V
Sbjct: 74 FTSMLINLLRDEEPTHIAAAFDVSRKT-FRSEMYPEYKAQRSK------SPDEFN-GQVD 125
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
+ + +LD LG + V I+G+EADD+IATL Q +G++ +V + D+D QL+ + V
Sbjct: 126 VTKE-VLDALG---IQVFAIDGYEADDIIATLATQAEAQGFKVLVVTGDRDSLQLVDDSV 181
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P + + + +T + +Y P + GD D +PGI PG G KTA
Sbjct: 182 TVLYPRKGVSDLTRFTPEEVEKKYGLTPSQYPDYAALRGDPSDNLPGI----PGVGEKTA 237
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRN 323
K ++++GSL +L+ D+ + K D LR N
Sbjct: 238 SKWIREYGSLASLV----------DHVDQVKGKVGDALRAN 268
>gi|357018755|ref|ZP_09081018.1| DNA polymerase I [Mycobacterium thermoresistibile ATCC 19527]
gi|356481473|gb|EHI14578.1| DNA polymerase I [Mycobacterium thermoresistibile ATCC 19527]
Length = 908
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 42/273 (15%)
Query: 74 EKTKSKKRVFFLDVNPLCYEG------------SRPSLQSFGRWLSLFFDQVSHADP--V 119
E+T + + LD N L + S + + + ++ + + +P V
Sbjct: 14 EQTSEQPTLLLLDGNSLAFRAFYALPAENFKTKSGLTTNAVYGFTAMLINLLRDENPTHV 73
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
A FD T R P YKA R A+ RG++ + +VL + V
Sbjct: 74 AAAFDVSRQT-FRLDKYPEYKAGR-------AATPDEFRGQI----EITKEVLAALGITV 121
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
+ G+EADD+IATL Q +G+R ++ + D+D QL++++V ++ P + + + +T
Sbjct: 122 LAEPGYEADDIIATLATQAEAEGFRVLIVTGDRDSLQLVTDNVTVLYPRKGVSELTRFTP 181
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+ +Y P + GD D +PGI PG G KTA K ++++GSL+ L+ N
Sbjct: 182 EAVYEKYGLTPEQYPDYAALRGDPSDNLPGI----PGVGEKTAAKWIREYGSLQGLVDNV 237
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR K D LR N + L R
Sbjct: 238 DAVR-----------GKVGDALRANLSSVVLNR 259
>gi|334127246|ref|ZP_08501174.1| DNA-directed DNA polymerase I [Centipeda periodontii DSM 2778]
gi|333389746|gb|EGK60904.1| DNA-directed DNA polymerase I [Centipeda periodontii DSM 2778]
Length = 877
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F L +++ VIA FD + T R L P YK R K +L
Sbjct: 35 AVHGFAMMLIKLLKEIAPTQIVIA-FD-KSRTTFRTALYPEYKGTRDKTPEELI------ 86
Query: 158 RGRVGRSHQFILDVLGKC-NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQ 216
S +L L K +P ++++ +EADD+I TL Q + G VV + D+D Q
Sbjct: 87 ------SQIPLLKELAKSLGIPFLELDDYEADDIIGTLGTQAAEGGVETVVVTGDRDALQ 140
Query: 217 LISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPG 276
LI E + +++ + + Y + +Y P + ++ ++GD D +PG VPG
Sbjct: 141 LIREGLTVLLTKKGISETRAYDTAVFEEEYGFAPIRLIDMKGLMGDSSDNIPG----VPG 196
Query: 277 FGRKTALKLLKKHGSLENLLNAAA 300
G KTA KLL ++G++EN+L+ AA
Sbjct: 197 VGPKTATKLLLEYGTIENVLDHAA 220
>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
Length = 908
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 24/254 (9%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPS 138
R FF L V +P+ FG + S+ + + +P +AV G T R + L S
Sbjct: 27 RAFFALPVENFSTSSGQPTNAVFG-FTSMLANLLRDEEPTHVAVAFDAGRTTFRTERLES 85
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YK +R +A+ RG+V I +L +V V+ G EADD++ATL Q
Sbjct: 86 YKGNR-------SATPEPFRGQV----DVIRQLLATMHVQVLDKPGFEADDILATLTAQA 134
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
++G +V S D+D QL+ V ++ P++ + S T + A+Y P L
Sbjct: 135 GEQGMEVLVCSGDRDTFQLVGPQVTVLYPVRGVSEMSRMTPEAVEAKYGLPPARYPDLAA 194
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA------AVRTVGRDYAQEA 312
+VG+ D +PG VPG G KTA K + ++ L +L A A ++ + AQ A
Sbjct: 195 LVGETSDNLPG----VPGVGPKTAAKWITQYDGLAGVLENAERITGKAGESLRANLAQVA 250
Query: 313 LTKHADYLRRNYEV 326
L + + LR + ++
Sbjct: 251 LNRELNELRTDLDL 264
>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
Length = 894
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 24/211 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P+ +FD +G T R +L YKA R L R +V Q I D++ +
Sbjct: 35 PIAVIFDAKGKT-FRDELFEDYKAQRPPMPDDL-------RSQV----QPIHDIIKAMGL 82
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P++ I+G EADDVI T Q +KG V+++ DKD QL+++ V LV + + +
Sbjct: 83 PLLVIDGVEADDVIGTFARQATEKGLDVVISTGDKDMAQLVNQHVTLVNTMTE----TTL 138
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL- 296
++ P + ++GD VD +PG VPG G KTAL L++ GS++++
Sbjct: 139 DPDGVKEKFGLPPELIIDFLALMGDKVDNIPG----VPGVGEKTALALIQSLGSIKDIYQ 194
Query: 297 NAAAVRTV---GRDYAQEALTKHADYLRRNY 324
+ AVR++ G E L ++ D +Y
Sbjct: 195 DLEAVRSLDFRGAKKMPEKLAENKDMAELSY 225
>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter daltonii FRC-32]
gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter daltonii FRC-32]
Length = 891
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 25/201 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + VFD G R ++ P+YKA+R L R ++ + I + +
Sbjct: 54 DHLAVVFDA-GKLTFRNEIYPAYKANRSAMPDDL-------RLQI----EPIKEAVRAFR 101
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+PV+++ G EADD+I T+ +KG AV+ + DKD Q++++ V L+ ++D
Sbjct: 102 IPVLELPGFEADDIIGTIACDCEKKGMAAVIVTGDKDLMQIVTDSVTLLDTMKDKASGP- 160
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ ++ P + + + GD D +PGI PG G KTA+KL+++H SL+ LL
Sbjct: 161 ---AEVVERFGVPPERVVDILALAGDSSDNIPGI----PGIGEKTAIKLIQEHHSLDQLL 213
Query: 297 -NAAAVR-TVG---RDYAQEA 312
NA+ V+ VG R++A +A
Sbjct: 214 ENASVVKGKVGERLREFADQA 234
>gi|406705653|ref|YP_006756006.1| DNA-directed DNA polymerase [alpha proteobacterium HIMB5]
gi|406651429|gb|AFS46829.1| DNA-directed DNA polymerase [alpha proteobacterium HIMB5]
Length = 923
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 24/198 (12%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ YKA+R + L + R V N+P V
Sbjct: 69 IFDSARKT-FRNEIYNDYKANRSEAPDDLAPQFEYIRKSVLA-----------FNLPSVD 116
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ +EADD+IAT V Q+L+KG + + S DKD QL + V++ P+++ F + +
Sbjct: 117 LINYEADDLIATYVEQILKKGSKVTIISSDKDLMQLYKKGVRIYDPMKN----KFVSEED 172
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAA 300
++ D + ++ + GD D VPG VPG G KTA +L+ K+G+LE LL NA
Sbjct: 173 VKNKFGVDADKVIDVQSLAGDSSDNVPG----VPGIGVKTAAELINKYGNLEELLKNAHE 228
Query: 301 VRTVGRDYAQEALTKHAD 318
++ R +E L ++ D
Sbjct: 229 IKQNKR---RETLIENKD 243
>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
Length = 921
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 24/220 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
H + VFD +G T R + YKA R L R ++ H+ I+ LG
Sbjct: 54 HPSHIAVVFDAKGKT-FRNDMYSEYKAQRPPMPDDL-------RSQIAPLHR-IIHALG- 103
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+P++ IEG EADDVI T+ + +G ++++ DKD QL++E V L+ + D
Sbjct: 104 --LPLISIEGVEADDVIGTIAKRASAEGRATLISTGDKDMAQLVNEHVTLINTMTD---- 157
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ + ++ P + ++GD D +PG+ PG G KTAL +L GS+E
Sbjct: 158 TIMGPEEVATKFGVGPELIIDFLALMGDKSDNIPGL----PGVGEKTALAMLNGVGSVEK 213
Query: 295 LL-NAAAVRTVGRDYAQEALTK---HADYLRRNYEVLALR 330
LL + +V VG A+ K +AD L+ +Y++ ++
Sbjct: 214 LLADPQSVLEVGFRGAKTMPAKIIDNADMLKLSYQLATIK 253
>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
Length = 1008
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 22/208 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD T R ++ P YKAHR L +F+ I + + ++P ++
Sbjct: 88 VFDKSEVT-FRNKIYPEYKAHRPPAPDDLIP--QFA---------LIREAVRAFDLPCLE 135
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT V Q ++G A + S DKD QL+++ V + ++D +
Sbjct: 136 QGGFEADDLIATYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKD----RRLGIPE 191
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + ++ + GD VD VPG VPG G KTA +L+ ++G LE LL A
Sbjct: 192 VIEKFGVPPEKVVEVQALAGDSVDNVPG----VPGIGIKTAAQLITEYGDLETLLQRAG- 246
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLAL 329
+ + +E+L +HA R + E++ L
Sbjct: 247 -EIKQPKRRESLIEHAAKARISRELVLL 273
>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
Length = 913
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S R+ + RS +VL + V+
Sbjct: 71 RDEAPTHIAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 130
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S++V ++ P + + + +T + +
Sbjct: 131 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVV 190
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 191 EKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIAEYGSLQALVDNVDSVR 246
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 247 GKVG-----DALREHLASVIRNRELTDL 269
>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
Length = 902
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V VFD +G T R L +YKA+R + +L R ++ + + +++
Sbjct: 63 DYVAVVFDPKGKT-FRHDLYHTYKANRIEMPNEL-------RSQI----KPLFEIIRALG 110
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
P++ EG+EADDVIATL + +KG +V++ DKD Q+++E V LV + D
Sbjct: 111 FPLIIKEGYEADDVIATLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTD----RL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
K + ++ P + + GD D +PG VP G KTA+K L ++ S+ENL+
Sbjct: 167 LNSKGVLEKFGVPPEKIIDYLTLTGDTTDNIPG----VPKVGPKTAVKWLSQYDSVENLI 222
Query: 297 NAA 299
A
Sbjct: 223 KHA 225
>gi|417750609|ref|ZP_12398964.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis S397]
gi|336457772|gb|EGO36766.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis S397]
Length = 913
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S R+ + RS +VL + V+
Sbjct: 71 RDEAPTHIAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 130
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S++V ++ P + + + +T + +
Sbjct: 131 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVV 190
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 191 EKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIAEYGSLQALVDNVDSVR 246
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 247 GKVG-----DALREHLASVIRNRELTDL 269
>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 919
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S R+ + RS +VL + V+
Sbjct: 77 RDEAPTHIAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEP 136
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S++V ++ P + + + +T + +
Sbjct: 137 GFEADDLIATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVV 196
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR 302
+Y P + GD D +PGI PG G KTA K + ++GSL+ L+ N +VR
Sbjct: 197 EKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIAEYGSLQALVDNVDSVR 252
Query: 303 -TVGRDYAQEALTKHADYLRRNYEVLAL 329
VG +AL +H + RN E+ L
Sbjct: 253 GKVG-----DALREHLASVIRNRELTDL 275
>gi|416074754|ref|ZP_11584683.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|444337963|ref|ZP_21151873.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|348006757|gb|EGY47152.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|443545907|gb|ELT55637.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 933
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G+KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGKKTALGLLQGIGSMAQI 214
>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
Length = 941
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 25/217 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD + VFD +G T R L P YKA R L R +V H+ ++ +LG
Sbjct: 58 ADYAVCVFDAKGPT-FRDALYPEYKAQRSAMPDDL-------RSQVEPIHE-VVQLLG-- 106
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
V+ + G EADDVI TL + +++S DKD QL+ E + ++ + D R
Sbjct: 107 -WKVLAVPGVEADDVIGTLACMASSQQIEVIISSGDKDLSQLVDEHITVIDTMNDRRR-- 163
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
L A++ P + + +VGD VD VPG VP G KTA+K L ++GSL+ L
Sbjct: 164 --DLAGVEAEFGVPPRLMVDYQTLVGDTVDNVPG----VPKVGPKTAVKWLLEYGSLDAL 217
Query: 296 L-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ A ++ + E L K D+L + E+L +++
Sbjct: 218 VARAGEIKGI----VGENLRKSLDWLPKGRELLTIKK 250
>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 867
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 17/199 (8%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F L D+ D + FD + T R + +YK R+ +L
Sbjct: 33 AIYGFSMMLLKLLDE-EKPDYIAVAFDKKAPT-FRHKEYSAYKGTRQSMPEELI------ 84
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
+ DV+ N+ ++IEG EADD+I T+ + G + ++ + D+D QL
Sbjct: 85 -----EQVDILKDVINAFNIKTIEIEGFEADDIIGTVSKIASENGLKVLIVTGDRDALQL 139
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
+S+ V++ + + + + Y + + +Y P + L+ ++GD D +PG VP
Sbjct: 140 VSDGVKVKICKKGITQMEEYDERAVVERYEVTPRQFIDLKGLMGDKSDNIPG----VPNI 195
Query: 278 GRKTALKLLKKHGSLENLL 296
G KTA+KL+K+ GS+EN+L
Sbjct: 196 GEKTAIKLIKEFGSIENVL 214
>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
Length = 893
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD G R +L P YKA+R L R ++G I D++ N+P
Sbjct: 56 VAVVFD-VGRETFRTELYPDYKANRAALPDDL-------RVQMGP----IRDLVRAFNIP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+++ G EADD+I L + G R V+ + DKD Q+++E V L+ D +
Sbjct: 104 ALELAGFEADDIIGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLL----DTMKEKRSA 159
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ I ++ +P + + GD D +PG VPG G KTA+KL++++GSL+ LL
Sbjct: 160 ITDVIERFGVEPRLVTDILGLAGDASDNIPG----VPGIGEKTAMKLIREYGSLDQLLER 215
Query: 299 AA 300
A+
Sbjct: 216 AS 217
>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
Length = 877
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +VP
Sbjct: 54 MLVAFDA-GKTTFRHKTFSEYKGGRQKTPPEL--SEQFP---------FIRELLDAFHVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S+ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
Length = 877
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +VP
Sbjct: 54 MLVAFDA-GKTTFRHKTFSEYKGGRQKTPPEL--SEQFP---------FIRELLDAFHVP 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S+ + +P + + YT
Sbjct: 102 RYELENYEADDIMGTLAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYT 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 162 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 212
>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
Length = 884
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L S++F FI ++L +VP
Sbjct: 61 MLVAFDA-GKTTFRHKTFSEYKGGRQKTPPEL--SEQFP---------FIRELLDAFHVP 108
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD++ TL + ++G V S DKD QL+S+ + +P + + YT
Sbjct: 109 RYELENYEADDIMGTLAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYT 168
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ +Y+ P + ++ ++GD D +PG VPG G KTA+KLL + ++E
Sbjct: 169 KEALFEKYSLSPKQIIDMKGLMGDQSDNIPG----VPGVGEKTAIKLLTQFETVE 219
>gi|359410902|ref|ZP_09203367.1| DNA polymerase I [Clostridium sp. DL-VIII]
gi|357169786|gb|EHI97960.1| DNA polymerase I [Clostridium sp. DL-VIII]
Length = 867
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 32/231 (13%)
Query: 80 KRVFFLDVNPL---CYEGSRPSLQSFG-------RWLSLFFDQVSHADP--VIAVFDGEG 127
K++ LD N L + P S G ++++ F +P +IA FD +
Sbjct: 2 KKLLLLDSNSLMNRAFYALPPLTNSDGINTNAIYGFMNMLFKMKEEINPDSIIAAFDLKA 61
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKIEGH 185
T R + YKA R K +L + QF I ++ + + +IEG
Sbjct: 62 PT-FRHKEYSEYKAGRNKMPPEL-------------AEQFPIIKELFKLMGIKIFEIEGF 107
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I T+ V + DKD QL S ++V+ + + + Y + +I +
Sbjct: 108 EADDIIGTVSKFAEDNDSEVFVVTGDKDALQLASGRTKIVITKKGVSETAVYDEEAFINE 167
Query: 246 YNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ PH + ++ ++GD D +PG VPG G KTA KL+K++GS+E +L
Sbjct: 168 FEVTPHQFIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIKEYGSIEEVL 214
>gi|357060797|ref|ZP_09121561.1| hypothetical protein HMPREF9332_01118 [Alloprevotella rava F0323]
gi|355375630|gb|EHG22913.1| hypothetical protein HMPREF9332_01118 [Alloprevotella rava F0323]
Length = 921
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 31/232 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIAV---------FDG 125
K+ + LD L Y P + S G+ S F VS + V+ FD
Sbjct: 2 KKFYLLDAYALIYRAYYGLIRSPRINSKGQNTSAIFGFVSTLNEVLQKEQPDLLAIGFDP 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
G T R +L P YKA R + + + I +++ +P++++ G
Sbjct: 62 SGQT-FRHELFPEYKAQREA-----------TPEDIKMAVPIIKELIKAYRIPILEVPGF 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADDVI T+ ++KGY + +PDKD+ QL+ ++ + P W + +
Sbjct: 110 EADDVIGTMAKAAVRKGYEVRMITPDKDYAQLVEPNLLMQRPGHGNAPWEILGPQEVCEK 169
Query: 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y P + ++GD D +PG PG G KTA LL++ GS E+++
Sbjct: 170 YGLQSPLQVIDYLALMGDAADNIPG----CPGVGPKTATTLLQQFGSCEDII 217
>gi|337266274|ref|YP_004610329.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
gi|336026584|gb|AEH86235.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
Length = 997
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R L P YKA+R L I N+P ++
Sbjct: 83 IFDYSSKT-FRNDLYPEYKANRSAPPEDLIPQ-----------FGLIRQATRAFNLPCIE 130
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+EG EADD+IAT + G + S DKD QL+ + V + P++D +
Sbjct: 131 MEGFEADDLIATYCRLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQ----IGIPE 186
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + L+ + GD VD VPG VPG G KTA +LL++ G L+ LL A
Sbjct: 187 VIEKWGVPPEKMVDLQALTGDSVDNVPG----VPGIGPKTAAQLLEQFGDLDGLLARAG- 241
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ +D +E++ + D R + +++ L+
Sbjct: 242 -EIKQDKRRESIIANTDKARISRQLVTLK 269
>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
Length = 862
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGK 174
D ++ FD + T R + YKA R++ +L QF + D+L K
Sbjct: 51 DYIVTTFDRKAPT-FRHEEYQDYKAGRKRMPDEL-------------HEQFEPLKDILSK 96
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ + +I+G EADD+I TL + +G + + D+D QL S+++++++ + +
Sbjct: 97 MAINIFEIDGFEADDLIGTLAVKAESEGIEVYIVTGDRDALQLASDNIKVLLTKKGVSER 156
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
Y I Y P + ++ ++GD D +PG VPG G KTA KL+K++GS+E
Sbjct: 157 EVYDRNRMIEDYGVTPTQFIDVKGLMGDASDNIPG----VPGIGEKTAYKLIKEYGSIEG 212
Query: 295 LLN 297
+L+
Sbjct: 213 VLD 215
>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
Length = 919
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 20/178 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P++ +FD +G T R ++ YKA R L R ++ H+ I + +G +
Sbjct: 58 PIVVIFDAKGKT-FRDEIYSEYKAQRPPMPDDL-------RLQIEPIHRMI-EAMG---L 105
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P+V IEG EADDVI T+ QV + G +V++ DKD QL+++ V LV + D +
Sbjct: 106 PLVIIEGVEADDVIGTIAKQVGEAGRDVIVSTGDKDMAQLVTDKVTLVNTMTD----TVM 161
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ ++ P + ++GD VD +PG VPG G KTAL LL+ GS++++
Sbjct: 162 DIAGVKDKFGIPPELIIDYLALMGDKVDNIPG----VPGVGEKTALALLQGIGSIKDI 215
>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
DSM 14838]
Length = 941
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 32/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVF 123
S ++F LD L Y P + S G S V+ + V+ F
Sbjct: 3 SDDKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAILGFVNTLEEVLKKENPTHIGVAF 62
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D G T R + YKA R + + + S I D++ +P++++
Sbjct: 63 DPAGPT-FRHEAYEQYKAQREE-----------TPEAIRLSVPIIKDIIRAYRIPILEVA 110
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADDVI TL + Q+G + +PDKD+ QL+SE+V + P + + ++
Sbjct: 111 GYEADDVIGTLATEAGQQGITTYMMTPDKDYGQLVSENVFMYRP-KHTGGFEVMGIEQVK 169
Query: 244 AQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A+++ + + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 170 AKFDIQSTQQVIDMLGLMGDASDNIPG----CPGVGEKTAQKLISEFGSIENLL 219
>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
Length = 850
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 22/217 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
+AD + VFD G R L P YK +R + L ++FS R + +
Sbjct: 49 NADYIAVVFD-TGSKNFRHTLYPQYKMNRPRLPEDLL--RQFSPLR---------EAVSA 96
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ EADDVIATL + + + V + DKD QL+ E VQ+ P+++
Sbjct: 97 LGIASEEVHNFEADDVIATLSTKYASEDVQVRVITADKDLLQLMGEHVQIFDPIKN---- 152
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ T ++ + ++ P L + + GD D +PG VP G KTA +L+ + GSL+N
Sbjct: 153 KYLTDEYVVDKFGVTPDKLLDVLALTGDASDNIPG----VPSIGVKTAARLINQFGSLDN 208
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L+ A V + +E L +HAD + ++++L+R
Sbjct: 209 VLSCA--EKVEQKKCREMLIQHADQALLSRDLVSLQR 243
>gi|383482048|ref|YP_005390963.1| DNA polymerase I [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
gi|378934387|gb|AFC72890.1| DNA polymerase I [Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 875
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ YKA+R
Sbjct: 25 PLNSPKGEPVGALYG-FTSMLLKLLSDFKPQHVAVVFDS-GGKNFRHQIYSDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV G N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVAGNLNFPILEKNGYEADDIIATFATKTAALGEHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E +++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTEHIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>gi|402837068|ref|ZP_10885599.1| DNA-directed DNA polymerase [Mogibacterium sp. CM50]
gi|402270084|gb|EJU19353.1| DNA-directed DNA polymerase [Mogibacterium sp. CM50]
Length = 868
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 38/263 (14%)
Query: 81 RVFFLDVNPL---CYEGSRPSLQSFGRW---LSLFFDQVSHA------DPVIAVFDGEGG 128
R+ +D N L Y RP + G + + F + ++ D + FD +
Sbjct: 2 RLVIIDGNSLLFRAYFAMRPMMTKDGVYTHGVYAFINMLNKITSDYTPDYIAVCFDMKSE 61
Query: 129 TEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEAD 188
T RQ YKA R++ +L + ++ H DVL N+ V + E +EAD
Sbjct: 62 TFRHRQY-SEYKAGRQQTPIELLS-------QIPLMH----DVLHAMNIRVFEKESYEAD 109
Query: 189 DVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNC 248
D+I T+ + G ++V + DKD QL+ E+ ++V+ + + ++ Y + +Y+
Sbjct: 110 DLIGTITADASRMGIESIVITGDKDELQLVDENTKVVINKKGMTEFTMYDEEAIFERYSL 169
Query: 249 DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDY 308
P + L+ ++GD D +PG VPG G K + LLK++GS+E ++ ++
Sbjct: 170 TPLQFIDLKGLMGDKSDNIPG----VPGIGEKKGIALLKEYGSVEGVI----------EH 215
Query: 309 AQEALTKHADYLRRNYEVLALRR 331
A E K D +R N E+ L +
Sbjct: 216 ADEIKGKMGDNIRANIEMARLSK 238
>gi|392555749|ref|ZP_10302886.1| DNA polymerase I [Pseudoalteromonas undina NCIMB 2128]
Length = 911
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 29/222 (13%)
Query: 113 VSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+ DP ++ VFD +G T R + YKA+R L R ++ H I+
Sbjct: 50 IKQYDPSHMVVVFDAKGKT-FRNDMYSEYKANRPPMPDDL-------RTQIAPLHS-IIK 100
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
+G P++ IEG EADDVI T ++ +V++ DKD QL++E V L+ + D
Sbjct: 101 AMG---FPLISIEGVEADDVIGTFARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTD 157
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
S + ++ P + ++GD VD +PG++ G G KTA+K L+K+G
Sbjct: 158 ----SISDPDTVVEKFGVGPELIIDYLALMGDKVDNIPGVE----GCGPKTAVKWLQKYG 209
Query: 291 SLENLL-NAAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
SL+ ++ NAA ++ +G E L K D+L +YE+ ++
Sbjct: 210 SLQGVIDNAADIKGKIG-----EKLAKAIDHLPLSYELATIK 246
>gi|388256406|ref|ZP_10133587.1| DNA polymerase I [Cellvibrio sp. BR]
gi|387940106|gb|EIK46656.1| DNA polymerase I [Cellvibrio sp. BR]
Length = 921
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 24/217 (11%)
Query: 118 PVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
P+ VFD +G T R + YKA+R L R +V Q I D++ +
Sbjct: 48 PIAVVFDAKGKT-FRDDMFAEYKANRPPMPDDL-------RPQV----QPIHDIVQAMGL 95
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
P++ IEG EADDVI TL Q ++ V+++ DKD QL++E V LV + + +
Sbjct: 96 PLLVIEGVEADDVIGTLARQATEQKRDVVISTGDKDMAQLVNEHVTLVNTMTE----TVL 151
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL- 296
+ A+Y P + ++GD VD +PG VPG G KTA L++ G L+ +
Sbjct: 152 DIPGVNAKYGFGPELMIDYLALMGDKVDNIPG----VPGVGEKTAQGLIQGMGGLDAIYA 207
Query: 297 NAAAVRTV---GRDYAQEALTKHADYLRRNYEVLALR 330
+ VRT+ G E L +H D +Y + ++
Sbjct: 208 DLEKVRTLSFRGAKTMPEKLIEHRDMAYLSYRLATIK 244
>gi|358446731|ref|ZP_09157273.1| DNA polymerase I [Corynebacterium casei UCMA 3821]
gi|356607314|emb|CCE55618.1| DNA polymerase I [Corynebacterium casei UCMA 3821]
Length = 876
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 20/228 (8%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP-VIAVFDGEGGTEHRRQLLPS 138
R F+ L V+ G + + +G ++S+ V P IAV G R + P
Sbjct: 16 RAFYALPVDKFSTSGGQHTNAVYG-FMSMMASLVGEEKPDSIAVAFDVGRKTFRTDMFPE 74
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YKA R +A + F +G+V I D+L K + + E EADD++ATL Q
Sbjct: 75 YKAQRE------SAPEEF-KGQV----TIIRDILDKAGITTLSRENFEADDILATLATQA 123
Query: 199 LQ-KGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
G+ ++ + D+D+ QL+++ ++ P+Q + + +T +Y P
Sbjct: 124 SDMAGFDTLIVTGDRDYLQLVNDSTTVLYPMQGVSKLHRFTPAAVEEKYGLTPEQYPDYA 183
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVRTV 304
+ GD D +PG VP G KTALK + ++ L+NLL NA A++ V
Sbjct: 184 ALRGDSSDNLPG----VPKVGEKTALKWILQYNDLDNLLDNADAIKGV 227
>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
Length = 939
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R + YKA+R T + RG+V I +VLG N+PV +EG+EADD+I
Sbjct: 99 RSERYADYKANR-------TTTPDDFRGQV----DLIKEVLGALNIPVFAVEGYEADDII 147
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP---LQDLDRWSFYTLKHYIAQYNC 248
ATL Q G++ ++ + D+D QL++E+V ++ P + DL R + + +Y
Sbjct: 148 ATLTTQAEADGFQVLITTGDRDAFQLVTENVTVLYPKRGVSDLGRIDPAEVDN---RYGL 204
Query: 249 DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDY 308
P + GD D +P I PG G KTA K +++ GSL L D
Sbjct: 205 TPEQYPDFAALRGDPSDNLPSI----PGVGEKTAAKWVREFGSLAELT----------DR 250
Query: 309 AQEALTKHADYLRRNYEVLALRR 331
E K D LR N + L R
Sbjct: 251 VDEVKGKAGDALRANLANVLLNR 273
>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 897
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G + R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKS-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++ Y+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
Length = 849
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD +G R+ YKA+R+ L + R ++L N
Sbjct: 50 DYVTVAFDKKGRA-VRKSEYEEYKANRKPMPDSLQVQIPYVR-----------EILAALN 97
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS- 235
+PV++ EG+EADDVI TLV + V+ + D+D QL+ ++V + + DR +
Sbjct: 98 IPVLECEGYEADDVIGTLVNRFKALDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTE 157
Query: 236 -FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
YT+++ +Y H + + +VGD D +PG++ G G KTA+KLL+++ +LEN
Sbjct: 158 DLYTVENVKEKYGVFAHQVVDYKALVGDASDNIPGVK----GIGDKTAIKLLEEYQTLEN 213
Query: 295 L 295
+
Sbjct: 214 I 214
>gi|359446945|ref|ZP_09236573.1| DNA polymerase I [Pseudoalteromonas sp. BSi20439]
gi|358039199|dbj|GAA72822.1| DNA polymerase I [Pseudoalteromonas sp. BSi20439]
Length = 911
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 29/222 (13%)
Query: 113 VSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+ DP ++ VFD +G T R + YKA+R L R ++ H I+
Sbjct: 50 IKQYDPSHMVVVFDAKGKT-FRNDMYSEYKANRPPMPDDL-------RTQIAPLHS-IIK 100
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
+G P++ IEG EADDVI T ++ +V++ DKD QL++E V L+ + D
Sbjct: 101 AMG---FPLISIEGVEADDVIGTFARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTD 157
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
S + ++ P + ++GD VD +PG++ G G KTA+K L+K+G
Sbjct: 158 ----SISDPDTVVEKFGVGPELIIDYLALMGDKVDNIPGVE----GCGPKTAVKWLQKYG 209
Query: 291 SLENLL-NAAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
SL+ ++ NAA ++ +G E L K D+L +YE+ ++
Sbjct: 210 SLQGVIDNAADIKGKIG-----EKLAKAIDHLPLSYELATIK 246
>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
gi|452205555|ref|YP_007485684.1| DNA polymerase I [Dehalococcoides mccartyi BTF08]
gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
gi|452112611|gb|AGG08342.1| DNA polymerase I [Dehalococcoides mccartyi BTF08]
Length = 903
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD +G T R ++ YKA R +L + ++GR Q I+D N+PV +
Sbjct: 60 FDKKGPT-FRHEMFKDYKAQRPPMPDELVS-------QLGRVRQ-IVDAF---NMPVYEQ 107
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM--PLQDLDRWSFYTLK 240
G EADDV+ TL + +G ++AS D D QL+S D++++ P S Y
Sbjct: 108 SGFEADDVLGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEA 167
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
A+Y P + ++GD D +PG VPG G KTA KL++++G +E++
Sbjct: 168 AVRAKYGLGPEHVADYKALMGDPSDNIPG----VPGIGPKTAQKLIEEYGGIEDI 218
>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum So ce56]
gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum So ce56]
Length = 900
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 87 VNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRK 145
++PL P+ ++G +++ V P + V G R +L P YKAHR
Sbjct: 33 ISPLSSPSGEPTHATYG-TVAMLTKLVDERKPAYLGVAMDSPGKTFRDELDPRYKAHRPP 91
Query: 146 FLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRA 205
L + SR R +++ +P+ EG EADD++A V + ++G R
Sbjct: 92 PPPDLGV--QMSRCR---------EIVEAYRIPIFIQEGLEADDLVAVAVARAKERGLRV 140
Query: 206 VVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVD 265
V+AS DKD QL+ D + VM L D R Y +A++ P L +VGD D
Sbjct: 141 VIASSDKDLMQLV--DGEQVM-LWDAMRDKVYGHPEVVAKFGVPPEQVRDLLALVGDTSD 197
Query: 266 GVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
VPG VPG G KTA +LL + GSL +
Sbjct: 198 NVPG----VPGVGLKTAAELLAQFGSLSAI 223
>gi|408377147|ref|ZP_11174750.1| DNA polymerase I [Agrobacterium albertimagni AOL15]
gi|407749106|gb|EKF60619.1| DNA polymerase I [Agrobacterium albertimagni AOL15]
Length = 991
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV T R+++ P YKA+R L I N+P
Sbjct: 64 LAVIFDYSSTTFRKEIYPLYKANRSAPPEDLIPQ-----------FGLIRHATRAFNLPC 112
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
++ EG EADD+IAT Q G + S DKD QL++ +V + ++D +
Sbjct: 113 IETEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLLTANVHMYDAMKD----KQIGI 168
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
I ++ P + L+ + GD D VPGI PG G KTA +LL++ G LE LL A
Sbjct: 169 PDVIEKWGVAPEKMIDLQAMTGDSTDNVPGI----PGIGPKTAAQLLEEFGDLETLLARA 224
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + +A+ R + +++ LR
Sbjct: 225 GEIKQVKR---RENIVANAELARLSRQLVELR 253
>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
Length = 903
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD +G T R ++ YKA R +L + ++GR Q I+D N+PV +
Sbjct: 60 FDKKGPT-FRHEMFKDYKAQRPPMPDELVS-------QLGRVRQ-IVDAF---NMPVYEQ 107
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM--PLQDLDRWSFYTLK 240
G EADDV+ TL + +G ++AS D D QL+S D++++ P S Y
Sbjct: 108 SGFEADDVLGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEA 167
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
A+Y P + ++GD D +PG VPG G KTA KL++++G +E++
Sbjct: 168 AVRAKYGLGPEHVADYKALMGDPSDNIPG----VPGIGPKTAQKLIEEYGGIEDI 218
>gi|334345323|ref|YP_004553875.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
gi|334101945|gb|AEG49369.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
Length = 928
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV +G R ++ +YKA+R L I D ++P
Sbjct: 59 LAVVLDKGSHTFRNEMYDAYKANRPPPPEDLVPQ-----------FPMIRDATRAFSLPC 107
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
++ G EADD+IA+ + +G+ + S DKD QLI V + +++ R + Y +
Sbjct: 108 IEEAGFEADDIIASYTKAAIAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVM 167
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
++ P + ++GD VD VPGI PG G KTA KL+ ++G LE L AA
Sbjct: 168 N----KFGVQPEQLGDVLALMGDSVDNVPGI----PGIGPKTAAKLITEYGGLEAALEAA 219
Query: 300 AVRTVGRDYAQEALTKHADYLRRNYEVLAL 329
++ + QE L HAD R + ++AL
Sbjct: 220 P--SMKKSKMQENLIAHADMARLSRRLVAL 247
>gi|410096891|ref|ZP_11291876.1| DNA polymerase I [Parabacteroides goldsteinii CL02T12C30]
gi|409225508|gb|EKN18427.1| DNA polymerase I [Parabacteroides goldsteinii CL02T12C30]
Length = 928
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 32/231 (13%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV-IAV-FDGE 126
++F +D L Y P + S G S F D + +P IAV FD +
Sbjct: 2 KLFLIDAYALIYRSYYAFLKNPRINSKGMNTSAIFGFINSLEDVLKRENPTHIAVAFDPK 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G T R + YKA R + + + +S I D++ N+P++++ E
Sbjct: 62 GPT-FRHEAYELYKAQREE-----------TPEVIRQSVPIIKDIIEAYNIPILEVPRFE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI T+ Q ++G+ + +PDKD+ QL+SE + + P D + +K + +Y
Sbjct: 110 ADDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGD-YEVMGVKEVLNKY 168
Query: 247 NCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + + L ++GD D +PG G G KTA KLL+++GS+ENLL
Sbjct: 169 SLTSVDQVIDLLGLMGDSSDNIPGCL----GVGEKTAQKLLEEYGSIENLL 215
>gi|395005950|ref|ZP_10389805.1| DNA polymerase I [Acidovorax sp. CF316]
gi|394316070|gb|EJE52815.1| DNA polymerase I [Acidovorax sp. CF316]
Length = 941
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
HAD +FD G T R ++ P YKA R L R ++ H+ ++ +LG
Sbjct: 56 HADYAACIFDASGPT-FRDEIYPEYKAQRAPMPDDL-------RAQIDPIHE-VVRMLGW 106
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
V+ I G EADDVI TL +G VV+S DKD QL+ E + ++ + R
Sbjct: 107 T---VLAIPGVEADDVIGTLAVTAASQGVDVVVSSGDKDLSQLVDEHITIIDTMNGKRR- 162
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ A++ PH + + +VGD VD VPG VP G KTA K L ++GSL
Sbjct: 163 ---DVAGVTAEFGVPPHLMVDYQTLVGDTVDNVPG----VPKVGPKTAAKWLMEYGSLAE 215
Query: 295 LL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L+ A ++ V A E L D+L +++ +R
Sbjct: 216 LVARAHEIKGV----AGENLRNTLDWLPTGRKLVTIR 248
>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
Length = 915
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R L P YKA+R L R ++ H+ I+ +G +P++
Sbjct: 62 VFDAKGKT-FRNDLYPEYKANRPPMPEDL-------RQQIEPIHE-IVKAMG---LPLLV 109
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV------MPLQDLDRWS 235
I+G EADDVI TL Q ++G ++++ DKD QL+S+ V L+ P+ D DR
Sbjct: 110 IDGVEADDVIGTLAKQACKEGRETLISTGDKDMAQLVSDHVTLINTMDKTNPITDRDR-- 167
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
I ++ P + +VGD VD +PG+ P KTA+K L+++GSL+ +
Sbjct: 168 ------VIEKFGVKPEQIIDYLALVGDKVDNIPGVDKCGP----KTAVKWLEQYGSLQGV 217
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ A +G E L + D L +YE+ ++
Sbjct: 218 IDHA--DEIGGKIG-ENLREAIDRLPLSYELATIK 249
>gi|422349819|ref|ZP_16430708.1| DNA polymerase I [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658028|gb|EKB30908.1| DNA polymerase I [Sutterella wadsworthensis 2_1_59BFAA]
Length = 947
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 30/215 (13%)
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVL 172
++ D + +FD +G R ++ P YK++R L R ++ H + D+
Sbjct: 47 LAKPDHAVIIFDAQG-KNFRHEMFPEYKSNRPPMPDDL-------RVQIEPLHGILKDL- 97
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
PVV + G EADDVIAT+ + G ++++A+ DKD QL+ +D+ L+ +
Sbjct: 98 ---GWPVVSVPGVEADDVIATIAEKARAAGMKSIIATGDKDMAQLVDDDIVLINTMN--- 151
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
FY + I +Y P + ++GD VD VPGI+ P KTA K + ++G L
Sbjct: 152 -VKFYDREGVIEKYGVPPERIVDYLSLMGDKVDNVPGIEKCGP----KTAAKWIAEYGDL 206
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVL 327
E + + +A E K +YLR L
Sbjct: 207 EGV----------KAHAGEVKGKAGEYLRAGLAFL 231
>gi|423223209|ref|ZP_17209678.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
gi|392639310|gb|EIY33135.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
Length = 952
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 32/234 (13%)
Query: 78 SKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI---------AVF 123
S ++F LD L Y P + S G S V+ + V+ F
Sbjct: 14 SDDKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAILGFVNTLEEVLKKENPTHIGVAF 73
Query: 124 DGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE 183
D G T R + YKA R + + + S I D++ +P++++
Sbjct: 74 DPAGPT-FRHEAYEQYKAQREE-----------TPEAIRLSVPIIKDIIRAYRIPILEVA 121
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADDVI TL + Q+G + +PDKD+ QL+SE+V + P + + ++
Sbjct: 122 GYEADDVIGTLATEAGQQGITTYMMTPDKDYGQLVSENVFMYRP-KHTGGFEVMGIEQVK 180
Query: 244 AQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A+++ + + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 181 AKFDIQSTQQVIDMLGLMGDASDNIPG----CPGVGEKTAQKLISEFGSIENLL 230
>gi|359438125|ref|ZP_09228166.1| DNA polymerase I [Pseudoalteromonas sp. BSi20311]
gi|358027176|dbj|GAA64415.1| DNA polymerase I [Pseudoalteromonas sp. BSi20311]
Length = 911
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 29/222 (13%)
Query: 113 VSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+ DP ++ VFD +G T R + YKA+R L R ++ H I+
Sbjct: 50 IKQYDPSHMVVVFDAKGKT-FRNDMYSEYKANRPPMPDDL-------RTQIAPLHS-IIK 100
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
+G P++ IEG EADDVI T ++ +V++ DKD QL++E V L+ + D
Sbjct: 101 AMG---FPLISIEGVEADDVIGTFARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTD 157
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
S + ++ P + ++GD VD +PG++ G G KTA+K L+K+G
Sbjct: 158 ----SISDPDTVVEKFGVGPELIIDYLALMGDKVDNIPGVE----GCGPKTAVKWLQKYG 209
Query: 291 SLENLL-NAAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
SL+ ++ NAA ++ +G E L K D+L +YE+ ++
Sbjct: 210 SLQGVIDNAADIKGKIG-----EKLAKAIDHLPLSYELATIK 246
>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
Length = 833
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 45/267 (16%)
Query: 80 KRVFFLDVNPLCYEG----------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGT 129
KRV +D + L Y P +G SL V+ VFD + +
Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSRGEPVQMVYGFARSLLKALKEDGQAVVVVFDAKAPS 71
Query: 130 EHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE-- 183
R + +YKA R F RQL +R ++D+LG +V++E
Sbjct: 72 -FRHEAYEAYKAGRAPTPEDFPRQLALVKR------------LVDLLG-----LVRLEAP 113
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADDV+ TL + ++G + + D+DF QL+SE V +++P + T K
Sbjct: 114 GYEADDVLGTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-----DGTLVTPKDVQ 168
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y P + R + GD D +PG V G G KTAL+LL + GS+ENLL +
Sbjct: 169 EKYGVPPERWVDFRALTGDRSDNIPG----VAGIGEKTALRLLAEWGSVENLLK--NLDR 222
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALR 330
V D + + H + LR + ++ +R
Sbjct: 223 VKPDSVRRKIEAHLEDLRLSLDLARIR 249
>gi|452204056|ref|YP_007484189.1| DNA polymerase I [Dehalococcoides mccartyi DCMB5]
gi|452111115|gb|AGG06847.1| DNA polymerase I [Dehalococcoides mccartyi DCMB5]
Length = 903
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD +G T R ++ YKA R +L + ++GR Q I+D N+PV +
Sbjct: 60 FDKKGPT-FRHEMFKDYKAQRPPMPDELVS-------QLGRVRQ-IVDAF---NMPVYEQ 107
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM--PLQDLDRWSFYTLK 240
G EADDV+ TL + +G ++AS D D QL+S D++++ P S Y
Sbjct: 108 SGFEADDVLGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEA 167
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
A+Y P + ++GD D +PG VPG G KTA KL++++G +E++
Sbjct: 168 AVRAKYGLGPEHVADYKALMGDPSDNIPG----VPGIGPKTAQKLIEEYGGIEDI 218
>gi|373487712|ref|ZP_09578379.1| DNA polymerase I [Holophaga foetida DSM 6591]
gi|372008787|gb|EHP09412.1| DNA polymerase I [Holophaga foetida DSM 6591]
Length = 933
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQSFGRW----LSLFFDQVSHADPVIAVFDGEGGTEH 131
+++R++ LD + + P L++ + ++L + + AVFD T
Sbjct: 2 TEQRLYLLDTFAFIFRSYFANPRLKNGAAYTFTRIALQLLEKHQPTHIAAVFDTPAPT-F 60
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R ++ P YKA+R L R ++ I +++ N+P+V++ G EADDV+
Sbjct: 61 RHEIYPDYKANRPDMPEDL-------RPQI----PLIRELIQALNIPIVELPGFEADDVM 109
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
TL Q G AV+ SPDKD Q++ +D + L D ++ + P
Sbjct: 110 GTLAAQSAAAGLPAVIVSPDKDLLQMV-DDAAGITVLNTKDGEIWHDRAGVRERMGVWPE 168
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
+ I+GD D V G VPG G K A +LL+K+GSLE +L A A + E
Sbjct: 169 QVVDFLTILGDASDNVKG----VPGIGEKGAAQLLEKYGSLEAILAAKAELKPKQREGLE 224
Query: 312 ALTKHADYLRR 322
A D RR
Sbjct: 225 AAAPWLDLTRR 235
>gi|418420717|ref|ZP_12993895.1| DNA polymerase I [Mycobacterium abscessus subsp. bolletii BD]
gi|363998168|gb|EHM19375.1| DNA polymerase I [Mycobacterium abscessus subsp. bolletii BD]
Length = 902
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA R +A+ RG++ + + VL +
Sbjct: 66 VAAAFDVSRKT-FRSERYPEYKATR-------SATPDEFRGQIDITKE----VLQALGIT 113
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ EG EADD+IATL Q +G++ V + D+D QL++EDV ++ P + + + +T
Sbjct: 114 VLAEEGFEADDIIATLATQGQAEGFKVFVVTGDRDSLQLVNEDVTVLYPRKGVSDLTRFT 173
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ + +Y P + GD D +PGI PG G KTA K + ++GSL+ L+
Sbjct: 174 PEAVVEKYGLTPSQYPDFAALRGDPSDNLPGI----PGVGEKTASKWILEYGSLQELV-- 227
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
D A K D LR N + L R
Sbjct: 228 --------DKADTVRGKVGDSLRANLASVILNR 252
>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
Length = 833
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 45/267 (16%)
Query: 80 KRVFFLDVNPLCYEG----------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGT 129
KRV +D + L Y P +G SL V+ VFD + +
Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSRGEPVQMVYGFARSLLKALKEDGQAVVVVFDAKAPS 71
Query: 130 EHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE-- 183
R + +YKA R F RQL +R ++D+LG +V++E
Sbjct: 72 -FRHEAYEAYKAGRAPTPEDFPRQLALVKR------------LVDLLG-----LVRLEAP 113
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADDV+ TL + ++G + + D+DF QL+SE V +++P + T K
Sbjct: 114 GYEADDVLGTLAKKAEREGMEVCILTGDRDFFQLLSEKVSVLLP-----DGTLVTPKDVQ 168
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y P + R + GD D +PG V G G KTAL+LL + GS+ENLL +
Sbjct: 169 EKYGVPPERWVDFRALTGDRSDNIPG----VAGIGEKTALRLLAEWGSVENLLK--NLDR 222
Query: 304 VGRDYAQEALTKHADYLRRNYEVLALR 330
V D + + H + LR + ++ +R
Sbjct: 223 VKPDSLRRKIEAHLEDLRLSLDLARIR 249
>gi|417951299|ref|ZP_12594406.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
gi|342805251|gb|EGU40529.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
Length = 932
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVIFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q + G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLISIPGVEADDVIGTLASQASKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ GS+E
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGSIE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL + AA+ G + L + D +Y++ ++
Sbjct: 213 KLYQNLDDIAALGFRGSKTMAKKLIDNKDNAEMSYQLATIK 253
>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
Length = 853
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 22/217 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
+AD + VFD G R L P YK +R + L ++FS R + +
Sbjct: 52 NADYIAVVFD-TGSKNFRHTLYPQYKMNRPRLPEDLL--RQFSPLR---------EAVSA 99
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ EADDVIATL + + + V + DKD QL+ E VQ+ P+++
Sbjct: 100 LGIASEEVHNFEADDVIATLSTKYASEDVQVRVITADKDLLQLMGEHVQIFDPIKN---- 155
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ T ++ + ++ P L + + GD D +PG VP G KTA +L+ + GSL+N
Sbjct: 156 KYLTDEYVVDKFGVTPDKLLDVLALTGDASDNIPG----VPSIGVKTAARLINQFGSLDN 211
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L+ A V + +E L +HAD + ++++L+R
Sbjct: 212 VLSCA--EKVEQKKCREMLIQHADQALLSRDLVSLQR 246
>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
Length = 915
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 27/207 (13%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
A+ + VFD +G T R YKAHR L +V H+ ++ +LG
Sbjct: 54 AEHAVCVFDAKGPT-FRDDWYADYKAHRPSMPEPLAQ-------QVAPIHE-VVRLLGW- 103
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDR 233
PV+++ G EADD I TL + G+R VV++ DKD QL+ E V L+ M + LD
Sbjct: 104 --PVLEVPGIEADDAIGTLACVAKRAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDP 161
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+A++ P + +VGD VD +PG++ V P KTA+K + +HGSL+
Sbjct: 162 AGV------LAKFGVPPQRIVDYLTLVGDAVDNIPGVEKVGP----KTAVKWITEHGSLD 211
Query: 294 NLLNAAAVRTVGRDYAQEALTKHADYL 320
++ AAA T+ + A E L + D+L
Sbjct: 212 GVMAAAA--TI-KGVAGENLRRALDWL 235
>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
Length = 957
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL + P+ +G L++ ++ +P + VFD +G T R +L YK+HR
Sbjct: 27 PLTNKNGEPTGAMYG-VLNMLKSLIAQVEPSHIAVVFDAKGKT-FRDELFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R +V H I+ LG +P++ IEG EADDVI TL Q G +
Sbjct: 85 PDNL-------RAQVQPLHT-IIKALG---IPLISIEGVEADDVIGTLAVQAANDGKNVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+++ + L+ + + LDR + I +Y P + + GD
Sbjct: 134 ISTGDKDMAQLVNDHIMLINTMNNTLLDR------EGVIEKYGIPPELIIDYLALQGDVS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG++ G G KTAL LL+ GSL+ +
Sbjct: 188 DNIPGVK----GVGGKTALGLLQGIGSLKEI 214
>gi|336313795|ref|ZP_08568717.1| DNA polymerase I [Rheinheimera sp. A13L]
gi|335881734|gb|EGM79611.1| DNA polymerase I [Rheinheimera sp. A13L]
Length = 925
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 24/216 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ VFD +G T R ++ YKAHR L R ++ HQ I++ +G +P
Sbjct: 58 MVVVFDAKGPT-FRNEMYSEYKAHRPPMPDDL-------RSQIAPLHQ-IIEAMG---LP 105
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ I G EADDVI TL Q Q+G ++++ DKD QL+ + V L+ + D +
Sbjct: 106 LICISGVEADDVIGTLAVQASQQGRHVLISTGDKDMAQLVDQHVTLINTMTD----TILD 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
++ P + ++GD D +PG+ PG G KTAL LL+ GS+E L
Sbjct: 162 PAGVAEKFGVGPELIVDYLALMGDKSDNIPGL----PGVGEKTALALLQGIGSIEKLYQQ 217
Query: 299 ----AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
AA+ G +T+ + L +Y++ ++
Sbjct: 218 LDQIAALNFRGSKTIAAKMTEFKEQLILSYQLATIK 253
>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
Length = 932
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + +FD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVIFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q + G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLISIPGVEADDVIGTLASQASKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLE 293
+ I ++ P + ++GD VD +PG VPG G KTA LL+ GS+E
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGSIE 212
Query: 294 ----NLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
NL + AA+ G + L + D +Y++ ++
Sbjct: 213 KLYQNLDDIAALGFRGSKTMAKKLIDNKDNAEMSYQLATIK 253
>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
Length = 880
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E L
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKL 216
>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
Length = 864
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 22/217 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
+AD + VFD G R L P YK +R + L ++FS R + +
Sbjct: 63 NADYIAVVFD-TGSKNFRHTLYPQYKMNRPRLPEDLL--RQFSPLR---------EAVSA 110
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ EADDVIATL + + + V + DKD QL+ E VQ+ P+++
Sbjct: 111 LGIASEEVHNFEADDVIATLSTKYASEDVQVRVITADKDLLQLMGEHVQIFDPIKN---- 166
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ T ++ + ++ P L + + GD D +PG VP G KTA +L+ + GSL+N
Sbjct: 167 KYLTDEYVVDKFGVTPDKLLDVLALTGDASDNIPG----VPSIGVKTAARLINQFGSLDN 222
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L+ A V + +E L +HAD + ++++L+R
Sbjct: 223 VLSCA--EKVEQKKCREMLIQHADQALLSRDLVSLQR 257
>gi|404215365|ref|YP_006669560.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Gordonia sp. KTR9]
gi|403646164|gb|AFR49404.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
[Gordonia sp. KTR9]
Length = 926
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG V
Sbjct: 86 IAAAFDVSRKT-FRSEMYPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---VS 133
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL + + GY+ ++ + D+D QL+ ++ P + + + +T
Sbjct: 134 VLAIEGYEADDIIATLATRAREDGYKVLIVTGDRDSLQLVDSSTTVLYPRKGVSDLTRFT 193
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL L++
Sbjct: 194 PEEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLAALVD 248
>gi|375087314|ref|ZP_09733694.1| DNA polymerase I [Megamonas funiformis YIT 11815]
gi|374561404|gb|EHR32744.1| DNA polymerase I [Megamonas funiformis YIT 11815]
Length = 882
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 33/263 (12%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLSLFFDQVSHADPVIAVFD 124
+KKR +D + L Y + P L S F L + D ++ FD
Sbjct: 7 NKKRFIIIDGSSLMYRAFFALPLLTSSSGIYTNAIMGFSNMLGKILTEYK-PDNIVVAFD 65
Query: 125 GEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG 184
T R Q+ YK R K +L + ++ +F L+ LG + ++ +
Sbjct: 66 KSRQT-FRTQMYAEYKGQREKTPDEL-------KSQIPLLREF-LEALG---IAFIEKDN 113
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
+EADD+I TL + + Y A++ + DKD QLI ++++++ + + + + +
Sbjct: 114 YEADDIIGTLATKAASQDYEALIVTGDKDALQLIRPNLKVMLTKRGIMDMQIFDEEAFKE 173
Query: 245 QY-NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRT 303
+Y +P + ++ ++GD D +PG VPG G KTALKLL ++ LENLLN +
Sbjct: 174 KYAGLEPIKLIDIKALMGDSSDNIPG----VPGIGEKTALKLLSQYQDLENLLN--NIDN 227
Query: 304 VGRDYAQEALTKHADYLRRNYEV 326
V +E L ++ + R +Y++
Sbjct: 228 VSGKKLKEKLQENQELARLSYKL 250
>gi|357058936|ref|ZP_09119782.1| hypothetical protein HMPREF9334_01499 [Selenomonas infelix ATCC
43532]
gi|355373282|gb|EHG20603.1| hypothetical protein HMPREF9334_01499 [Selenomonas infelix ATCC
43532]
Length = 876
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F L +++ VIA FD + T R L P YK R K +L A
Sbjct: 35 AVHGFAMMLVKLLKELAPTQIVIA-FD-KSRTTFRTALYPDYKGTRDKTPEELIAQI--- 89
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
+ ++ +P ++++ +EADD+I TL Q + G VV + D+D QL
Sbjct: 90 --------PLLKELAQSLGIPFLELDDYEADDIIGTLATQAAEGGTETVVVTGDRDALQL 141
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
I + + +V+ + + Y + +Y P + ++ ++GD D +PG VPG
Sbjct: 142 IRDGLTVVLTKKGISDTRAYDTAAFEEEYGFAPIRLIDMKGLMGDSSDNIPG----VPGV 197
Query: 278 GRKTALKLLKKHGSLENLLNAAA 300
G KTA KLL +G++EN+L+ AA
Sbjct: 198 GPKTATKLLLAYGTIENVLDHAA 220
>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
Length = 903
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD +G T R ++ YKA R +L + ++GR Q I+D N+PV +
Sbjct: 60 FDKKGPT-FRHEMFKDYKAQRPPMPDELVS-------QLGRVRQ-IVDAF---NMPVYEQ 107
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM--PLQDLDRWSFYTLK 240
G EADDV+ TL + +G ++AS D D QL+S D++++ P S Y
Sbjct: 108 SGFEADDVLGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEA 167
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
A+Y P + ++GD D +PG VPG G KTA KL++++G +E++
Sbjct: 168 AVRAKYGLGPEHVADYKALMGDPSDNIPG----VPGIGPKTAQKLIEEYGGIEDI 218
>gi|222475578|ref|YP_002563995.1| DNA polymerase I [Anaplasma marginale str. Florida]
gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
Length = 864
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 22/217 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
+AD + VFD G R L P YK +R + L ++FS R + +
Sbjct: 63 NADYIAVVFD-TGSKNFRHTLYPQYKMNRPRLPEDLL--RQFSPLR---------EAVSA 110
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ EADDVIATL + + + V + DKD QL+ E VQ+ P+++
Sbjct: 111 LGIASEEVHNFEADDVIATLSTKYASEDVQVRVITADKDLLQLMGEHVQIFDPIKN---- 166
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
+ T ++ + ++ P L + + GD D +PG VP G KTA +L+ + GSL+N
Sbjct: 167 KYLTDEYVVDKFGVTPDKLLDVLALTGDASDNIPG----VPSIGVKTAARLINQFGSLDN 222
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+L+ A V + +E L +HAD + ++++L+R
Sbjct: 223 VLSCA--EKVEQKKCREMLIQHADQALLSRDLVSLQR 257
>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
Length = 905
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 29/219 (13%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
AD VFD +G T R +L YKA+R +L A +L+ +
Sbjct: 49 QADYSACVFDAKGKT-FRDELYAEYKANRPPMPDELAAQI-----------APLLECINA 96
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLD 232
P++ +EG EADDVI TLV Q + R ++++ DKD QL++ V LV M + LD
Sbjct: 97 MGWPMLSVEGVEADDVIGTLVKQAEGENMRCIISTGDKDIAQLVNPQVTLVNTMTNEMLD 156
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
+ ++ P L +VGD VD +PG+ V P KTA+K L ++G+L
Sbjct: 157 EAGV------LGRFGVPPERMLDYLALVGDAVDNIPGVAKVGP----KTAVKWLNQYGTL 206
Query: 293 ENLL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+NLL +A + V + + AL +L R+ ++L+++
Sbjct: 207 DNLLVHAGEIGGVVGENLRNAL----GWLSRSRQLLSIK 241
>gi|60679700|ref|YP_209844.1| DNA polymerase I [Bacteroides fragilis NCTC 9343]
gi|375356484|ref|YP_005109255.1| putative DNA polymerase I [Bacteroides fragilis 638R]
gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
Length = 941
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 31/239 (12%)
Query: 73 LEKTKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI------- 120
L+ ++F LD L Y P + S G S V+ + V+
Sbjct: 4 LKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPTH 63
Query: 121 --AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
FD G T R + YKA R + + + S I D++ +P
Sbjct: 64 IGVAFDPPGPT-FRHEAFEQYKAQREE-----------TPEAIRLSVPIIKDIIKAYRIP 111
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++++ G+EADDVI TL + +G + +PDKD+ QL+++ V + P +
Sbjct: 112 ILEVAGYEADDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMG 171
Query: 239 LKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ A+++ P + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 172 VEQVKAKFDIQSPAQVIDMLGLMGDSSDNIPG----CPGVGEKTAQKLIAEFGSIENLL 226
>gi|430005988|emb|CCF21791.1| DNA polymerase I [Rhizobium sp.]
Length = 1001
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R + L I N+P ++
Sbjct: 79 IFDYSAKT-FRKDLYNAYKANRSEPPEDLIPQ-----------FGLIRQATRAFNLPCIE 126
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL++ +V + ++D +
Sbjct: 127 TEGFEADDIIATYARQAEAIGADVTIISSDKDLMQLVTPNVHMYDSMKDKQ----IGIPE 182
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAA 300
I ++ P + L+ +VGD VD VPGI PG G KTA +LL++ G L+ LL AA
Sbjct: 183 VIEKWGVPPEKMIDLQAMVGDSVDNVPGI----PGIGPKTAAQLLEEFGDLDTLLARAAE 238
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + +A+ R + ++ LR
Sbjct: 239 IKQVKR---RENIVANAELARLSRRLVELR 265
>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal),
partial [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 963
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 89 PLCYEGSRPSLQSFG--RWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L F Q S + I VFD G T R L YKAHR
Sbjct: 58 PLSNSKGEPTGAIYGVLNMLRRLFLQYSPQNMAI-VFDAPGET-FRSALFSEYKAHRPSM 115
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H +L +P++ +EG EADDVI TL + GY V
Sbjct: 116 PDDL-------RAQIAPLHH----ILSAMGLPLLVVEGVEADDVIGTLAKDAEKAGYEVV 164
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+S + L+ + D LD ++ P + L ++GD
Sbjct: 165 ISTGDKDMAQLVSPHITLINTMNDKTLDP------DGVCEKFGVPPDLIVDLLALMGDSA 218
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN----AAAVRTVGRDYAQEALTKHAD-- 318
D +PG VPG G KTA LL+ G L+ L + A + G E L KH +
Sbjct: 219 DNIPG----VPGIGEKTAQALLQGMGGLDKLFDHLDKIADLSFRGARTLAEKLIKHQEQA 274
Query: 319 YLRR 322
YL R
Sbjct: 275 YLSR 278
>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 529
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 105 WLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRS 164
+L++ ++H+D + D G R L P YKA+R LT R
Sbjct: 39 FLNMVLKYIAHSDYLTIALDA-GKKNFRHNLYPEYKANRVTPPEDLTPQFTILR------ 91
Query: 165 HQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVL-QKGYRAVVASPDKDFKQLISEDVQ 223
+ + N+ +IEG+EADD+IATL + + ++ VV S DKD QL++ ++
Sbjct: 92 -----EAVEAFNLSYEEIEGYEADDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNHNIL 146
Query: 224 LVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTAL 283
+ P++++ + K I ++ + H L L + GD D +PG VPG G KTA
Sbjct: 147 IFDPIKNI----YIDEKQVIEKFGVNSHKLLDLFSLTGDASDNIPG----VPGIGPKTAA 198
Query: 284 KLLKKHGSL 292
KLL + SL
Sbjct: 199 KLLDEFDSL 207
>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
Length = 908
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH + A FD T R++ P YK R +A+ RG++ + +
Sbjct: 68 EQPSH---IAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQIDITKE---- 112
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG + V+ G EADD+IATL Q +G+R +V + D+D QL+S+DV ++ P +
Sbjct: 113 VLGALGITVLAEAGFEADDIIATLATQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKG 172
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T + +Y P + GD D +PGI PG G KTA K + ++G
Sbjct: 173 VSELTRFTPEAVQEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYG 228
Query: 291 SLENLLN 297
SL+ L++
Sbjct: 229 SLQGLVD 235
>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
Length = 941
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 31/239 (12%)
Query: 73 LEKTKSKKRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVI------- 120
L+ ++F LD L Y P + S G S V+ + V+
Sbjct: 4 LKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPTH 63
Query: 121 --AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
FD G T R + YKA R + + + S I D++ +P
Sbjct: 64 IGVAFDPPGPT-FRHEAFEQYKAQREE-----------TPEAIRLSVPIIKDIIKAYRIP 111
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++++ G+EADDVI TL + +G + +PDKD+ QL+++ V + P +
Sbjct: 112 ILEVAGYEADDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMG 171
Query: 239 LKHYIAQYNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ A+++ P + + ++GD D +PG PG G KTA KL+ + GS+ENLL
Sbjct: 172 VEQVKAKFDIQSPAQVIDMLGLMGDSSDNIPG----CPGVGEKTAQKLIAEFGSIENLL 226
>gi|377567701|ref|ZP_09796908.1| DNA polymerase I [Gordonia terrae NBRC 100016]
gi|377535099|dbj|GAB42073.1| DNA polymerase I [Gordonia terrae NBRC 100016]
Length = 926
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + G+V + + +LD LG V
Sbjct: 86 IAAAFDVSRKT-FRSEMYPEYKAQRSKSPDEFN-------GQVDLTKE-VLDALG---VS 133
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG+EADD+IATL + + GY+ ++ + D+D QL+ ++ P + + + +T
Sbjct: 134 VLAIEGYEADDIIATLATRAREDGYKVLIVTGDRDSLQLVDASTTVLYPRKGVSDLTRFT 193
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ +Y P + GD D +PGI PG G KTA K ++++GSL L++
Sbjct: 194 PEEVEKKYGLTPTQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLAALVD 248
>gi|348590443|ref|YP_004874905.1| DNA polymerase I [Taylorella asinigenitalis MCE3]
gi|347974347|gb|AEP36882.1| DNA polymerase I [Taylorella asinigenitalis MCE3]
Length = 888
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 23/185 (12%)
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVL 172
++ D + VFD G T R L YKAHR L R ++ HQ I D L
Sbjct: 28 ITKPDFIACVFDAPGKT-FRHDLYKEYKAHRPAMPDDL-------RDQIESVHQAI-DAL 78
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD-L 231
G CN+ + G EADD+IATL + + V+A+ DKD QL++ +V+++ ++ L
Sbjct: 79 G-CNI--IMQSGVEADDIIATLADYATKNQIKTVIATGDKDIAQLVNSNVEIITGKEEIL 135
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
DR + +Y P + ++GD D +PG+ V P KTA K L+++G+
Sbjct: 136 DR------NGVLEKYGVYPEQIIDYLMLMGDSSDNIPGVDKVGP----KTASKWLQEYGT 185
Query: 292 LENLL 296
LENLL
Sbjct: 186 LENLL 190
>gi|336119737|ref|YP_004574514.1| DNA polymerase I [Microlunatus phosphovorus NM-1]
gi|334687526|dbj|BAK37111.1| DNA polymerase I [Microlunatus phosphovorus NM-1]
Length = 901
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R ++ YKA+R T+ F +G+V + +VL NVP V ++G+EADDVI
Sbjct: 70 RSEIYTEYKANRS------TSPDEF-KGQV----DLVKEVLDALNVPHVAVDGYEADDVI 118
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL Q Y ++ + D+D QL+S+ V ++ P + + + T +Y P
Sbjct: 119 ATLATQAEAADYDVLICTGDRDAFQLVSDRVTVLYPRRGVSDLARMTPAAVEERYFVPPT 178
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
L +VG+ D +PGI PG G KTA K L + L+NL+ A + A E
Sbjct: 179 RYPELAALVGESSDNLPGI----PGVGPKTAAKWLAAYDGLDNLITHAPEL---KGKAAE 231
Query: 312 ALTKHADYLRRNYEVLALRR 331
A + D +R N +V AL R
Sbjct: 232 AFKERIDAVRLNRQVNALVR 251
>gi|408829079|ref|ZP_11213969.1| DNA polymerase I [Streptomyces somaliensis DSM 40738]
Length = 902
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 21/201 (10%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R + P YKA+R +A+ +G+V + I ++L N P +EG+EADDVI
Sbjct: 79 RSEEFPEYKANR-------SATPDAFKGQV----ELIGELLDTMNAPRFAVEGYEADDVI 127
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
ATL + G+ +V + D+D QL+S+ V ++ P + + + +T + +Y P
Sbjct: 128 ATLATRAEADGFDVLVVTGDRDSFQLVSDRVTVLYPTKGVSELTRFTPEKVREKYGLSPS 187
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA-----VRTVGR 306
+ GD D +PGI PG G KTA K + + GS L+ AA V R
Sbjct: 188 QYPDFAALRGDPSDNLPGI----PGVGEKTAAKWINQFGSFGELVERAAEVKGKVGQALR 243
Query: 307 DYAQEA-LTKHADYLRRNYEV 326
D+ + L +H L R+ E+
Sbjct: 244 DHLESVKLNRHLTELVRDVEL 264
>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 858
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 105 WLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRS 164
+L++ ++H+D + D G R L P YKA+R LT R
Sbjct: 39 FLNMVLKYIAHSDYLTIALDA-GKKNFRHNLYPEYKANRVTPPEDLTPQFTILR------ 91
Query: 165 HQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVL-QKGYRAVVASPDKDFKQLISEDVQ 223
+ + N+ +IEG+EADD+IATL + + ++ VV S DKD QL++ ++
Sbjct: 92 -----EAVEAFNLSYEEIEGYEADDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNHNIL 146
Query: 224 LVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTAL 283
+ P++++ + K I ++ + H L L + GD D +PG VPG G KTA
Sbjct: 147 IFDPIKNI----YIDEKQVIEKFGVNSHKLLDLFSLTGDASDNIPG----VPGIGPKTAA 198
Query: 284 KLLKKHGSL 292
KLL + SL
Sbjct: 199 KLLDEFDSL 207
>gi|404418666|ref|ZP_11000433.1| 5'-3' exonuclease [Staphylococcus arlettae CVD059]
gi|403489259|gb|EJY94837.1| 5'-3' exonuclease [Staphylococcus arlettae CVD059]
Length = 293
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 120 IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPV 179
+AV G R + YK +R +L F + I D G NV V
Sbjct: 58 VAVCWDMGQQTFRNDMFTGYKQNRPAPPEELIPQFDFVKE--------ISDQFGFVNVGV 109
Query: 180 VKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTL 239
+EADDVI TL Q + V + D+D Q I+++V++ + + + ++ YTL
Sbjct: 110 TN---YEADDVIGTL-AQHYSETDEVFVITGDRDILQCINQNVEIWLTKKGFNIYNRYTL 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+ +Y P + ++ +GD DG PG++ G G KTA+KL+++HGS+EN++NA
Sbjct: 166 DRFTDEYGLQPKQLIDVKAFMGDTADGYPGVK----GIGEKTAIKLIQQHGSVENVINAI 221
Query: 300 AVRTVGR 306
TVG+
Sbjct: 222 DQLTVGQ 228
>gi|363897207|ref|ZP_09323746.1| hypothetical protein HMPREF9624_00308 [Oribacterium sp. ACB7]
gi|361958704|gb|EHL12001.1| hypothetical protein HMPREF9624_00308 [Oribacterium sp. ACB7]
Length = 864
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 23/205 (11%)
Query: 97 PSLQSFGRWLSLFFDQVS--HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
P+ FG +L++FF ++ A+ V FD T R ++ YK R+ +L
Sbjct: 32 PTNGVFG-FLNIFFKELELEEAEHVAVAFDMPVPT-FRHKMFSDYKGTRKSMPEELK--- 86
Query: 155 RFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDF 214
+ + ++L NVP++ +EG+EADD++ T+ ++ ++G + S D+D
Sbjct: 87 --------QQVPILQELLTAMNVPILTMEGYEADDILGTVAKRMQEEGKEVTIVSGDRDL 138
Query: 215 KQLISEDVQLVMPLQ---DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQ 271
QL E +++ +P + + +++Y K ++ P + L+ ++GD D +PG
Sbjct: 139 LQLSDEHIKISLPKTAKGETNIYNYYP-KDVEEEWGVSPKEFIDLKALMGDSSDNIPG-- 195
Query: 272 HVVPGFGRKTALKLLKKHGSLENLL 296
VPG G KTA ++ K+ S+EN L
Sbjct: 196 --VPGMGEKTATWIIAKYHSIENAL 218
>gi|343927498|ref|ZP_08766969.1| DNA polymerase I [Gordonia alkanivorans NBRC 16433]
gi|343762572|dbj|GAA13895.1| DNA polymerase I [Gordonia alkanivorans NBRC 16433]
Length = 915
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 26/205 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R ++ P YKA R K + F+ G+V + + +LD LG V
Sbjct: 75 IAAAFDVSRKT-FRSEMFPEYKAQRSK------SPDEFN-GQVDLTKE-VLDALG---VT 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ IEG EADD+IATL Q ++ ++ ++ + D+D QL+ ++ P + + + +T
Sbjct: 123 VMAIEGFEADDIIATLATQAREQDFKVLIVTGDRDSLQLVDPSTTVLYPRKGVSDLTRFT 182
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +Y P + GD D +PGI PG G KTA K ++++GSL +L+
Sbjct: 183 PEEVEKKYGLTPAQYPDYAALRGDPSDNLPGI----PGVGEKTASKWIREYGSLASLV-- 236
Query: 299 AAVRTVGRDYAQEALTKHADYLRRN 323
D+ E K D LR N
Sbjct: 237 --------DHVDEVKGKVGDALRAN 253
>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
Length = 901
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 24/184 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R +L YKAHR +L Q + D++ +P
Sbjct: 56 IAVVFDAKGKT-FRHELFEQYKAHRPPMPEELACQI-----------QPLHDLIRALGLP 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSF 236
++ ++G EADDVI TL Q + +++S DKD QL++ V LV M L LD
Sbjct: 104 LLCMKGVEADDVIGTLARQATAQRLETLISSGDKDLAQLVNPHVNLVNTMNLSKLDPAGV 163
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
A++N P + +VGD VD +PGI PG G KTA KLL ++ SL+ ++
Sbjct: 164 K------AKFNVSPEQIVDYLALVGDTVDNIPGI----PGVGPKTAAKLLCQYHSLDQIM 213
Query: 297 NAAA 300
A+
Sbjct: 214 AYAS 217
>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 887
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 26/228 (11%)
Query: 105 WLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGR 163
+LS+F + ++ +P +AV R +L P YKA R + +G+V
Sbjct: 47 FLSMFVNILTSEEPTHLAVAFDVARETFRNELFPEYKAQRAPTPEEF-------KGQV-- 97
Query: 164 SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQ 223
+ + D+L V V+ G+EADDVIATL ++G + ++ + D+D QL+++DV
Sbjct: 98 --EILKDILHAMGVTTVEKPGYEADDVIATLATAATKQGMKTLIVTGDRDSFQLVNDDVT 155
Query: 224 LVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTAL 283
++ P + + + T +Y+ P + GD D +P I PG G KTA
Sbjct: 156 VLYPTRGVSTLNRMTPAAVEKKYDLTPTQYPDFAALRGDPSDNLPKI----PGVGEKTAT 211
Query: 284 KLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
K +KK+ +L NLL + E K D LR + +A+ R
Sbjct: 212 KWIKKYETLGNLLA----------HVDEIKGKVGDALRERVDQVAMNR 249
>gi|430746078|ref|YP_007205207.1| DNA polymerase I [Singulisphaera acidiphila DSM 18658]
gi|430017798|gb|AGA29512.1| DNA polymerase I [Singulisphaera acidiphila DSM 18658]
Length = 899
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 115/270 (42%), Gaps = 42/270 (15%)
Query: 77 KSKKRVFFLDVNPLCYE-----------GSRPSLQSFGRWLSLFFDQVS-----HADPVI 120
K + ++ LD L Y+ +P+ FG +F D V+ D +
Sbjct: 2 KPRPTLYILDAYSLIYQVFHAIPLMTGPAGQPTQAVFG----IFRDLVNLVRERKPDYLA 57
Query: 121 AVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
A FDG G R L P YKA R +L R V VPV+
Sbjct: 58 AAFDGAGRV-FRSDLFPEYKAQRSAMPEELVPQIPVIR-----------RVFDGFRVPVL 105
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
G EADDVIAT+ + ++G V+ + DKD +QL+++ V++ +L F +
Sbjct: 106 MEAGVEADDVIATVSRRAEEQGLDVVICTADKDARQLLNDHVRIF----NLRTQKFLDVA 161
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
+ P + L + GD D VPGI PG G KT KLL++ G LE LL A
Sbjct: 162 GLKGDWGIRPDQVVDLLALTGDTADNVPGI----PGIGLKTGAKLLEEFGDLETLL--AN 215
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
V V +E L + A+ R ++ LR
Sbjct: 216 VDKVSGAKRKENLREFAETARMARSLIVLR 245
>gi|335045699|ref|ZP_08538722.1| DNA-directed DNA polymerase [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759485|gb|EGL37042.1| DNA-directed DNA polymerase [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 864
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 97 PSLQSFGRWLSLFFDQVS--HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
P+ FG +L++FF ++ A+ V FD T R ++ YK R+ +L
Sbjct: 32 PTNGVFG-FLNIFFKELELEEAEHVAVAFDMPVPT-FRHKMFSDYKGTRKSMPEELK--- 86
Query: 155 RFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDF 214
+ + ++L NVP++ +EG+EADD++ T+ ++ ++G + S D+D
Sbjct: 87 --------QQVPILQELLTAMNVPILTMEGYEADDILGTVAKRMQEEGKEVTIVSGDRDL 138
Query: 215 KQLISEDVQLVMPLQ---DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQ 271
QL + +++ +P + + +++Y K A++ P + L+ ++GD D +PG
Sbjct: 139 LQLSDKHIKISLPKTAKGETNIYNYYP-KDVEAEWGVSPKEFIDLKALMGDSSDNIPG-- 195
Query: 272 HVVPGFGRKTALKLLKKHGSLENLL 296
VPG G KTA ++ K+ S+EN L
Sbjct: 196 --VPGMGEKTATWIIAKYHSIENAL 218
>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium gilvum Spyr1]
gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium gilvum Spyr1]
Length = 908
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH + A FD T R++ P YK R +A+ RG++ + +
Sbjct: 68 EQPSH---IAAAFDVSRQT-FRKEKYPEYKEGR-------SATPDEFRGQIDITKE---- 112
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VLG + V+ G EADD+IATL Q +G+R +V + D+D QL+S+DV ++ P +
Sbjct: 113 VLGALGITVLAEAGFEADDIIATLATQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKG 172
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T + +Y P + GD D +PGI PG G KTA K + ++G
Sbjct: 173 VSELTRFTPEAVQEKYGLTPAQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYG 228
Query: 291 SLENLLN 297
SL+ L++
Sbjct: 229 SLQGLVD 235
>gi|190889822|ref|YP_001976364.1| DNA polymerase I [Rhizobium etli CIAT 652]
gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium
etli CIAT 652]
Length = 997
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELVPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL++ +V + ++D +
Sbjct: 115 TEGFEADDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKD----KQIGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 171 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + + R + E++ LR
Sbjct: 227 IKQVKR---RETILANIEMARISRELVRLR 253
>gi|407983880|ref|ZP_11164517.1| DNA polymerase I family protein [Mycobacterium hassiacum DSM 44199]
gi|407374457|gb|EKF23436.1| DNA polymerase I family protein [Mycobacterium hassiacum DSM 44199]
Length = 914
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 74 EKTKSKKRVFFLDVNPLCYEG----------SRPSLQS---FGRWLSLFFDQVSHADP-- 118
E T K + LD N L + +R L + +G + ++ + + P
Sbjct: 20 ETTDGKPTLLLLDGNSLAFRAFYALPAENFKTRNGLTTNAVYG-FTAMLINLLRDEKPTH 78
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V A FD T R + P YKA R A+ RG++ + +VL +
Sbjct: 79 VAAAFDVSRQT-FRLERYPEYKAGR-------AATPDEFRGQI----EITKEVLAALGIT 126
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G+EADD+IATL Q +G+R +V + D+D QL+++++ ++ P + + + +T
Sbjct: 127 VLAEPGYEADDIIATLATQAEAQGFRVLVVTGDRDSLQLVTDNITVLYPRKGVSDLTRFT 186
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL+ L++
Sbjct: 187 PEAVVEKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEYGSLQALVD 241
>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
Length = 920
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
G R + P YKA R++ +T S FI D+L ++P++++EG EA
Sbjct: 62 GKTFRHEAFPPYKAQRQETPEDITLSV-----------PFIKDILRAFHIPILQVEGFEA 110
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DDVI TL + ++G + +PDKD+ QLI E+V + P + + +Y
Sbjct: 111 DDVIGTLATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHG-GGYDIIGEQEIAEKYG 169
Query: 248 CD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
P + L ++GD D PG PG G KTA+KL+ + GS++ L++
Sbjct: 170 ISTPAQVIDLLALMGDSADNFPG----CPGVGEKTAVKLINEFGSIDELIS 216
>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
gi|188023732|gb|EDU61772.1| DNA-directed DNA polymerase [Providencia stuartii ATCC 25827]
Length = 930
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYKPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + + +G +P++ + G EADDVI TL Q QKG +
Sbjct: 85 PDDL-------REQIAPLHEMV-EAMG---LPLLVVSGVEADDVIGTLARQASQKGIPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMTN----TILGPQEVEDKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VPG G KTAL LL+ GSL+ + ++
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLKEIYDS 217
>gi|410610880|ref|ZP_11321985.1| DNA polymerase I [Glaciecola psychrophila 170]
gi|410169591|dbj|GAC35874.1| DNA polymerase I [Glaciecola psychrophila 170]
Length = 916
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 25/213 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ VFD +G T R ++ YKA+R L R ++ H D++G +P
Sbjct: 63 IVVVFDAKGKT-FRNEMYAEYKANRPPMPDDL-------RTQIAPLH----DIIGAMGLP 110
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ I+G EADDVI TL Q G ++++ DKD QL++ V+L+ + +++
Sbjct: 111 LLVIDGVEADDVIGTLANQASNLGMETIISTGDKDMAQLVTAHVRLINTMTNVEMDEAGV 170
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
L+ + + P + ++GD VD +PG+ G KTA K L +HG+LE ++
Sbjct: 171 LEKFAVR----PDQIIDYLALMGDKVDNIPGVDKC----GPKTAAKWLAEHGTLEQVMAK 222
Query: 298 AAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
A++V+ ++ + AL+ +L +YE+ ++
Sbjct: 223 ASSVKGKVGEHLRNALS----HLPLSYELATIK 251
>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716484|ref|YP_005304820.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|379725167|ref|YP_005317353.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
gi|385793869|ref|YP_005830275.1| DNA polymerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|421754721|ref|ZP_16191687.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700075]
gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|377826616|gb|AFB79864.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
gi|377828161|gb|AFB78240.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|409090484|gb|EKM90500.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700075]
Length = 897
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++ Y+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|408415188|ref|YP_006625895.1| DNA polymerase I [Bordetella pertussis 18323]
gi|401777358|emb|CCJ62644.1| DNA polymerase I [Bordetella pertussis 18323]
Length = 904
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q A+ + VFD G T R L P YK+HR L A + I +
Sbjct: 47 QDHKAEYAVCVFDARGKT-FRDDLFPDYKSHRPPMPEDLAAQI-----------EPIHEA 94
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
+ P++ IEG EADD+I TL Q +G +V++ DKD QL+ V LV +
Sbjct: 95 VRALGWPLLAIEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSG- 153
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ +++ P + +VGD VD VPG+ V P KTA+K L +HGS
Sbjct: 154 ---EVLDVAGVNSKFGVPPERIVDYLMLVGDTVDNVPGVNKVGP----KTAVKWLAEHGS 206
Query: 292 LENLLNAA-AVRTVGRDYAQEAL 313
++ L+ AA +V+ V + +EA+
Sbjct: 207 IDALVAAADSVKGVAGNNLREAI 229
>gi|386743146|ref|YP_006216325.1| DNA polymerase I [Providencia stuartii MRSN 2154]
gi|384479839|gb|AFH93634.1| DNA polymerase I [Providencia stuartii MRSN 2154]
Length = 930
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P V VFD +G T R +L SYK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLRSLIMQYKPSHVAVVFDAKGKT-FRDELFESYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H+ + + +G +P++ + G EADDVI TL Q QKG +
Sbjct: 85 PDDL-------REQIAPLHEMV-EAMG---LPLLVVSGVEADDVIGTLARQASQKGIPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL+ ++ L+ + + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVEPNITLINTMTN----TILGPQEVEDKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VPG G KTAL LL+ GSL+ + ++
Sbjct: 190 IPG----VPGVGEKTALALLQGIGSLKEIYDS 217
>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
Length = 937
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD +G T R L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 IFDAKGKT-FRDDLYPAYKEHRAPMPDDL-------RAQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
IEG EADDVI TL + ++G R +V++ DKD QL+++ V LV M + LD
Sbjct: 108 IEGVEADDVIGTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQ-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L + GSL+N++ A
Sbjct: 166 ----AKFGVPPERIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLTEFGSLDNVIARA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L ++L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLEWLPKGRELLTVK 245
>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
gi|384203684|ref|YP_005589423.1| DNA polymerase I [Bordetella pertussis CS]
gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
Length = 904
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q A+ + VFD G T R L P YK+HR L A + I +
Sbjct: 47 QDHKAEYAVCVFDARGKT-FRDDLFPDYKSHRPPMPEDLAAQI-----------EPIHEA 94
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
+ P++ IEG EADD+I TL Q +G +V++ DKD QL+ V LV +
Sbjct: 95 VRALGWPLLAIEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSG- 153
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ +++ P + +VGD VD VPG+ V P KTA+K L +HGS
Sbjct: 154 ---EVLDVAGVNSKFGVPPERIVDYLMLVGDTVDNVPGVNKVGP----KTAVKWLAEHGS 206
Query: 292 LENLLNAA-AVRTVGRDYAQEAL 313
++ L+ AA +V+ V + +EA+
Sbjct: 207 IDALVAAADSVKGVAGNNLREAI 229
>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
gi|410419701|ref|YP_006900150.1| DNA polymerase I [Bordetella bronchiseptica MO149]
gi|427821368|ref|ZP_18988431.1| DNA polymerase I [Bordetella bronchiseptica D445]
gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
gi|408446996|emb|CCJ58668.1| DNA polymerase I [Bordetella bronchiseptica MO149]
gi|410572368|emb|CCN20643.1| DNA polymerase I [Bordetella bronchiseptica D445]
Length = 904
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q A+ + VFD G T R L P YK+HR L A + I +
Sbjct: 47 QDHKAEYAVCVFDARGKT-FRDDLFPDYKSHRPPMPEDLAAQI-----------EPIHEA 94
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
+ P++ IEG EADD+I TL Q +G +V++ DKD QL+ V LV +
Sbjct: 95 VRALGWPLLAIEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSG- 153
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ +++ P + +VGD VD VPG+ V P KTA+K L +HGS
Sbjct: 154 ---EVLDVAGVNSKFGVPPERIVDYLMLVGDTVDNVPGVNKVGP----KTAVKWLAEHGS 206
Query: 292 LENLLNAA-AVRTVGRDYAQEAL 313
++ L+ AA +V+ V + +EA+
Sbjct: 207 IDALVAAADSVKGVAGNNLREAI 229
>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
Length = 947
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 31/236 (13%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFF-------DQVSHADPV--IAVFDG 125
K++F LD L Y +RP S G S + + + + P FD
Sbjct: 3 KKLFLLDGMALVYRAHFALVARPIFTSKGVNTSALYGFTQTLLEIIKNQQPTHFAVAFDT 62
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
T R P YKA R + L+ + R V N+P++ +G+
Sbjct: 63 AAPTA-RHVEFPEYKAQREEMPEDLSKALPHVRRMVE-----------AFNIPLIICDGY 110
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ 245
EADD+I TLV + ++G+ + + +PDKDF QL+ ++ L P + + L + +
Sbjct: 111 EADDLIGTLVRKAEKEGFVSYMVTPDKDFGQLVDQNTFLYKPSRMGEGIEILGLPEILQK 170
Query: 246 YNCD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300
+ P + + + GD D +PG VPG G KTA KL+ ++GS+ENLL A
Sbjct: 171 WGVQRPEQVIDVLGLWGDVSDNIPG----VPGIGEKTAAKLIAQYGSVENLLAHTA 222
>gi|431806279|ref|YP_007233180.1| DNA polymerase I [Liberibacter crescens BT-1]
gi|430800254|gb|AGA64925.1| DNA polymerase I [Liberibacter crescens BT-1]
Length = 978
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 10/155 (6%)
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
++P ++IEG EADD+IA+ ++G + S DKD QL+S V L L++
Sbjct: 109 SLPSIEIEGFEADDIIASYTRAAEKEGAEITIVSSDKDLMQLVSPSVSLYDTLKN----K 164
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ + ++ P + L+ + GD +D +PGI PG G KTA LL+++G+L+N+
Sbjct: 165 RIGIDDVLKKWGVPPEKMICLQALTGDSIDNIPGI----PGIGPKTAALLLEEYGNLDNI 220
Query: 296 LNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
L A T+ ++AL +HA+ R + E++ LR
Sbjct: 221 LLQA--HTMKPSKRRDALIEHANMARLSRELVTLR 253
>gi|338810642|ref|ZP_08622884.1| DNA polymerase I [Acetonema longum DSM 6540]
gi|337277387|gb|EGO65782.1| DNA polymerase I [Acetonema longum DSM 6540]
Length = 872
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 16/181 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD T R + +YKAHR+ +L +++FS ++ ++
Sbjct: 52 DAVAVAFDKSRIT-FRNEFYQAYKAHRQATPSEL--AEQFS---------YVRRLVEAFG 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ V++ G+EADD+I T+ Q Q G+ ++ + DKD QL+ VQ+++ + +
Sbjct: 100 IKVLEEAGYEADDIIGTVACQAEQHGFDVLIVTGDKDALQLVKPGVQVMLTRKGITDLEV 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+ + + A+Y P + ++ ++GD D +PG V G G KTALKLL++ G +E +L
Sbjct: 160 FNPETFFAKYGITPKQFIDMKGLMGDPSDNIPG----VAGIGEKTALKLLQQFGDMEAVL 215
Query: 297 N 297
Sbjct: 216 Q 216
>gi|443491266|ref|YP_007369413.1| DNA polymerase I PolA [Mycobacterium liflandii 128FXT]
gi|442583763|gb|AGC62906.1| DNA polymerase I PolA [Mycobacterium liflandii 128FXT]
Length = 899
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VL + V+
Sbjct: 57 RDEAPTHIAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAP 116
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T + +
Sbjct: 117 GFEADDIIATLATQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVV 176
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + GD D +PGI PG G KTA K + ++GSL+ L++
Sbjct: 177 EKYGLTPVQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIVEYGSLQGLVD 226
>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
gi|421751048|ref|ZP_16188106.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
gi|421752904|ref|ZP_16189914.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
gi|421756636|ref|ZP_16193539.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700103]
gi|421758503|ref|ZP_16195349.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70102010]
gi|423051306|ref|YP_007009740.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
gi|424673771|ref|ZP_18110702.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70001275]
gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|409088923|gb|EKM88979.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
gi|409089034|gb|EKM89088.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
gi|409092195|gb|EKM92173.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70102010]
gi|409093375|gb|EKM93321.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700103]
gi|417435546|gb|EKT90436.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70001275]
gi|421952028|gb|AFX71277.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
Length = 897
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++ Y+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
Length = 948
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 82 VFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVS---------HADPVIAVFDGEG 127
++ LD L Y +RP + + GR S + S D + D G
Sbjct: 4 LYLLDAYALIYRAYYAFINRPLVDAQGRDTSALYGFASTLQDIIDKERPDYIAVAIDMPG 63
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
GT R + P YKA+R + + RFS +I +++ +P++ +EG+EA
Sbjct: 64 GT-FRHKEYPEYKANRPETPETI----RFSM-------PYIKELVQAYQIPLLGVEGYEA 111
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DD+I TL Q ++ GY + +PDKD+ QL+ Q+ P + + + A+Y
Sbjct: 112 DDLIGTLSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYG 171
Query: 248 CD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGR 306
P + +VGD D VPG PG G+ A +LL++ S+E++ A + V
Sbjct: 172 IRYPLQMIDYLGLVGDSSDNVPG----CPGIGKVAAQRLLEEFDSIEDIY--ARIDQVKP 225
Query: 307 DYAQEAL 313
YA++ L
Sbjct: 226 TYAKKLL 232
>gi|183982446|ref|YP_001850737.1| DNA polymerase I [Mycobacterium marinum M]
gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
Length = 899
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VL + V+
Sbjct: 57 RDEAPTHIAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAP 116
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T + +
Sbjct: 117 GFEADDIIATLATQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVV 176
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + GD D +PGI PG G KTA K + ++GSL+ L++
Sbjct: 177 EKYGLTPVQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIVEYGSLQGLVD 226
>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
Length = 897
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++ Y+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|433647755|ref|YP_007292757.1| DNA polymerase I [Mycobacterium smegmatis JS623]
gi|433297532|gb|AGB23352.1| DNA polymerase I [Mycobacterium smegmatis JS623]
Length = 897
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 31/222 (13%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+Q SH + A FD T R P YKA R +A+ RG++ + +
Sbjct: 58 EQPSH---IAAAFDVSRQT-FRVDKYPEYKAGR-------SATPDEFRGQIDITKE---- 102
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
VL + V+ G EADD+IATL Q GYR +V + D+D QL+S+DV ++ P +
Sbjct: 103 VLVALGITVLAEPGFEADDIIATLATQAEDDGYRVLVVTGDRDSLQLVSDDVTVLYPRKG 162
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + +T + + +Y P + GD D +PGI PG G KTA K + + G
Sbjct: 163 VSELTRFTPEAVLDKYGLTPQQYPDFAALRGDPSDNLPGI----PGVGEKTATKWIAEFG 218
Query: 291 SLENLL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
SL++L+ N AV+ K D LR N + L R
Sbjct: 219 SLQSLVDNVDAVK-----------GKVGDALRANLSSVVLNR 249
>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
Length = 872
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 33/259 (12%)
Query: 77 KSKKRVFFLDVNPLCYEG--SRP-SLQS---------FGRWLSLFFDQVSHADP--VIAV 122
+ KK +F LD + L + + P SLQ+ FG + + + DP +
Sbjct: 2 EDKKELFLLDGSSLLHRAFYALPESLQTSDGEYTNGVFG-FTKMLLRLIEEEDPDSLAVA 60
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD G T R + YKA+R++ + ++ + +VL +PVV++
Sbjct: 61 FDLAGPT-FRHEEYEEYKANRKE-----------TPDKLKPQFGLMKEVLEAFRIPVVEL 108
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
EG+EADD+I TL Q ++GY+ + + D+D QL++E ++ + + Y L+
Sbjct: 109 EGYEADDIIGTLARQAEEEGYQVTIVTGDRDALQLVTEQTKIRYTKRGITNIVDYDLEKV 168
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVR 302
+Y +P + + ++GD D +PG V G G+KT+ KLL + GSLE +L+ +
Sbjct: 169 EEEYELEPRKLIDKKGLMGDKSDNIPG----VDGIGKKTSTKLLHQFGSLEEVLD--NID 222
Query: 303 TVGRDYAQEALTKHADYLR 321
V ++ L + AD R
Sbjct: 223 QVSGKKRKQTLKEQADRAR 241
>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
Length = 959
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD +G T R L P+YK HR L R ++ H+ + LG P++
Sbjct: 76 VFDAKGKT-FRDDLYPAYKEHRAPMPDDL-------RQQIEPIHEAV-RALG---WPILM 123
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
++G EADDVI TL + ++G R VV++ DKD QL+++ V LV M + LD
Sbjct: 124 VDGVEADDVIGTLAERATREGVRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGV--- 180
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+A++ P + ++GD VD VPG VP G KTA+K L ++GSL++++ A
Sbjct: 181 ---LAKFGVPPGKIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLGEYGSLDSVIARA 233
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L D+L + E+L ++
Sbjct: 234 GEIKGV----VGENLRNTLDWLPKGRELLTVK 261
>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
Length = 903
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 132 RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVI 191
R ++ P YKA+R K A + I +VLG + V EG+EADDVI
Sbjct: 71 RAKMYPEYKANRSKSPESFPAQV-----------ELIKEVLGALGIVVEAHEGYEADDVI 119
Query: 192 ATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPH 251
AT + ++GY+ ++ + D+D QL++ DV ++ P + + YT + +Y P
Sbjct: 120 ATYATKAQEQGYQVLIMTGDRDALQLVTPDVTVLYPNRGVSDLVRYTPEQVQEKYGLTPA 179
Query: 252 SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQE 311
+ GD D +P I PG G KTA ++ + SL+ LL A G+ +
Sbjct: 180 QYPDFAALRGDPSDNLPKI----PGVGEKTAASWVRAYNSLDELLERAD-EVPGK--TGQ 232
Query: 312 ALTKHADYLRRNYEVLALRR 331
AL +H D +R+N ++ L R
Sbjct: 233 ALREHLDQVRQNRQLTELVR 252
>gi|333897428|ref|YP_004471302.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
gi|333112693|gb|AEF17630.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
Length = 867
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D + FD + T R + +YK R+ +L + DV+ N
Sbjct: 51 DYIAIAFDKKAST-FRHKEYSAYKGTRQSMPEELI-----------EQVDILKDVINAFN 98
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+ ++IEG EADD+I T+ + G ++ + D+D QL+S +V++ + + + +
Sbjct: 99 IKTIEIEGFEADDIIGTVSKIASESGMDVLIVTGDRDALQLVSANVKVKICKKGITQMDE 158
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
Y K +Y P + L+ ++GD D +PG VP G KTA+KL+K+ GS+ENLL
Sbjct: 159 YDEKAVFEKYEVTPLQFIDLKGLMGDKSDNIPG----VPNIGEKTAIKLVKEFGSIENLL 214
>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
Length = 944
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 25/217 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD +G T R L P YKA R L R +V H+ ++ +LG
Sbjct: 58 ADYAACVFDAKGPT-FRDALYPQYKAQRSPMPDDL-------RSQVEPIHE-VVRLLG-- 106
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
V+ + G EADDVI TL ++G +++S DKD QL+ E++ ++ + D R
Sbjct: 107 -WKVLDVPGVEADDVIGTLACLASKQGIEVIISSGDKDLSQLVDENITVIDTMNDRRR-- 163
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
L A++ P + + +VGD VD VPG VP G KTA+K L ++GSL+ L
Sbjct: 164 --DLAGVEAEFGVPPRLMVDYQALVGDAVDNVPG----VPKVGPKTAVKWLLEYGSLDAL 217
Query: 296 L-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ A ++ V D + +L D+L + E+L +++
Sbjct: 218 VARAGEIKGVVGDNLRLSL----DWLPKGRELLTIKK 250
>gi|315122836|ref|YP_004063325.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313496238|gb|ADR52837.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 233
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 20/178 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R ++ P YKA+R + L R G +P ++
Sbjct: 64 IFDYPDKT-FRNEIYPDYKANRPQIPEMLLPQLPLVR--------LATQAFG---IPSIE 111
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
I+G EADD+IAT ++G+ + S DKD QL+S L D + +++
Sbjct: 112 IQGFEADDIIATYASIAEKRGFSVTIVSTDKDLMQLVSPTTCLY----DSIKEEKIDIEN 167
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
I ++ P + L+ + GD +D +PGI PG G KTA LL+++G+L+N+LN A
Sbjct: 168 VIKKWGVPPEKMVCLQALSGDSIDNIPGI----PGIGYKTAASLLQEYGNLDNILNNA 221
>gi|403668450|ref|ZP_10933720.1| DNA polymerase I [Kurthia sp. JC8E]
Length = 874
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 78 SKKRVFFLDVNPLCYEG--SRPSLQS-----------FGRWLS--LFFDQVSHADPVIAV 122
+K+++ LD N L Y + P L + F L L +Q +H ++
Sbjct: 2 TKEKLLLLDGNSLAYRAFFALPLLTNDQGIHTNAVYGFTTMLQKILAEEQPTH---ILVA 58
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD G T R YK R+K +L S++F ++ +L N+ ++
Sbjct: 59 FDA-GKTTFRHSTYSEYKGGRQKTPPEL--SEQFP---------YLRKLLDAYNMQRYEL 106
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
E +EADD+I TL + K + ++ S DKD QL S++ + + + + YT +H
Sbjct: 107 EMYEADDIIGTLSKEADAKNLQTIIVSGDKDLTQLASDNTTVYITRKGMTDIEKYTPQHV 166
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+Y+ P + ++ ++GD D +PG VPG G KTA+KLL + S+EN+
Sbjct: 167 FEKYSLTPLQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLTQFESVENVF 216
>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
Length = 920
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 128 GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEA 187
G R + P YKA R++ +T S FI D+L ++P++++EG EA
Sbjct: 62 GKTFRHEAFPPYKAQRQETPEDITFSV-----------PFIKDILRAFHIPILQVEGFEA 110
Query: 188 DDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYN 247
DDVI TL + ++G + +PDKD+ QLI E+V + P + + +Y
Sbjct: 111 DDVIGTLATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHG-GGYDIIGEQEIAEKYG 169
Query: 248 CD-PHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
P + L ++GD D PG PG G KTA+KL+ + GS++ L++
Sbjct: 170 ISTPAQVIDLLALMGDSADNFPG----CPGVGEKTAVKLINEFGSIDELIS 216
>gi|387121098|ref|YP_006286981.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875590|gb|AFI87149.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 933
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|404396629|ref|ZP_10988423.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|348610574|gb|EGY60262.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
Length = 937
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 29/212 (13%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD +G T R L P+YK HR L R ++ H+ + LG P++
Sbjct: 60 IFDAKGKT-FRDDLYPAYKEHRAPMPDDL-------RAQIEPIHEAV-RALG---WPILV 107
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
+EG EADDVI TL + ++G R +V++ DKD QL+++ V LV M + LD
Sbjct: 108 VEGVEADDVIGTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQ-- 165
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
A++ P + ++GD VD VPG VP G KTA+K L + GSL+N++ +A
Sbjct: 166 ----AKFGVPPERIVDYLSLIGDTVDNVPG----VPKVGPKTAVKWLTEFGSLDNVIAHA 217
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V E L ++L + E+L ++
Sbjct: 218 GEIKGV----VGENLRNTLEWLPKGRELLTVK 245
>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 897
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++ Y+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|421588531|ref|ZP_16033809.1| DNA polymerase I [Rhizobium sp. Pop5]
gi|403706740|gb|EJZ21922.1| DNA polymerase I [Rhizobium sp. Pop5]
Length = 999
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 67 IFDYSAKT-FRKDLYDAYKANRSAPPEELVPQ-----------FGLIREATRAFNLPCIE 114
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT + G V S DKD QL++ +V + ++D +
Sbjct: 115 TEGFEADDIIATYARKAEAIGADVTVVSSDKDLMQLVTSNVHMYDSMKDKQ----IGIPD 170
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 171 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 226
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D + + E++ LR
Sbjct: 227 IKQVKR---RETILANIDMAKLSRELVRLR 253
>gi|422939217|ref|YP_007012364.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
gi|407294368|gb|AFT93274.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
Length = 897
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V VFD +G R QL P YKAHR+ +L R ++ HQ I K
Sbjct: 53 VAVVFDAKGKN-FRHQLYPQYKAHRKDIDDEL-------RVQIQPLHQII----EKMGFA 100
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ +G EADDVI TL ++ ++ Y+ ++++ DKD QL+++++ L ++++
Sbjct: 101 VIIEDGVEADDVIGTLAQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTT----D 156
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y PH + ++GD D +PGI P G KTA+K L+ + +++ ++ N
Sbjct: 157 VAGVLEKYQISPHQMIDYLALMGDSSDNIPGI----PKVGPKTAVKWLQDYQNIDGIIAN 212
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
++ VG E L + D L+ +Y++ ++
Sbjct: 213 QQQIKGKVG-----ENLRNNIDLLKLSYQLATIK 241
>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
L2-32]
gi|154084003|gb|EDN83048.1| DNA-directed DNA polymerase [Bifidobacterium adolescentis L2-32]
Length = 895
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 99/223 (44%), Gaps = 34/223 (15%)
Query: 113 VSHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFI 168
H D + FD +GGT R Q+LP YK R + L QL Q+ +
Sbjct: 8 AEHPDHLAVAFDVKGGT-FRNQMLPQYKGTRDAAPEELLSQLPLIQQ------------M 54
Query: 169 LDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228
L LG V ++ G+E DDVI TL Q GYR +V S D+D QLI++++ ++ P
Sbjct: 55 LTALG---VTYIEKPGYEGDDVIGTLASMGDQAGYRTLVLSGDRDAFQLINDNITVLYPG 111
Query: 229 QDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
T +Y+ P L + G+ D +PG VPG G A K + +
Sbjct: 112 HHFKDLKHMTPDAVQEKYHVSPAQYPDLAALRGETADNIPG----VPGVGDGFAAKWINQ 167
Query: 289 HGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+G LE ++ ++A E K + LR N E + L R
Sbjct: 168 YGGLEQII----------EHADEISGKKGEALRENIEQVKLNR 200
>gi|415718180|ref|ZP_11467162.1| DNA polymerase I [Gardnerella vaginalis 1500E]
gi|388060009|gb|EIK82710.1| DNA polymerase I [Gardnerella vaginalis 1500E]
Length = 1024
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 27/219 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVL 172
D + FD +GGT R ++LP YK R ++ L QL I +L
Sbjct: 69 DRLAIAFDVKGGT-FRNKMLPQYKGTREAAPQELLSQLP---------------LIQQML 112
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
++ ++ G+E DDVI TL GYR +V S D+D QLI +++ ++ P Q
Sbjct: 113 RSLDITYIEKPGYEGDDVIGTLATMGADAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFK 172
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
+ +YN P L + G+ D +PG VPG G A K + + GSL
Sbjct: 173 DLKQMNAAAVLEKYNVTPKQYPDLAALRGETADNIPG----VPGVGDGYAAKWINQFGSL 228
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
E++++ A T + EAL ++ D +R N V AL R
Sbjct: 229 EDIISHAGEITGKKG---EALRENIDQVRLNRRVNALVR 264
>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
Length = 943
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 26/229 (11%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTAS 153
++ F L F +V H + + FD T R L YKA+R +RQ+ A
Sbjct: 62 AIHGFASALLKIF-EVWHPEYLAVTFDSREKT-FRHNLYEPYKANRPAPPEDLVRQIEA- 118
Query: 154 QRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKD 213
IL+++ ++P++K+ G+EADD+I + V + +K + +PDKD
Sbjct: 119 --------------ILELIDAFSIPLIKLPGYEADDLIGSAVKR-FEKQCSIYIVTPDKD 163
Query: 214 FKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHV 273
QL+ E V ++ P + + + +AQ+ +P + L + GD D +PG +
Sbjct: 164 LAQLVHEGVIMLKPSKKQNELEPFGPAEIMAQFGVEPERFIDLLTLTGDTSDNIPGAK-- 221
Query: 274 VPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRR 322
G G KTA LL K+G+L+N+ T + EA D +R+
Sbjct: 222 --GIGPKTAAALLLKYGTLDNIYRNIGELTPKTRASLEAFQPQLDLIRQ 268
>gi|416068114|ref|ZP_11582638.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348001358|gb|EGY42106.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 933
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
Length = 915
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 28/253 (11%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPV-IAVFDGEGGTEHRRQLLPS 138
R FF L V+ +P+ FG + S+ + + +P +AV G T R + +
Sbjct: 34 RAFFALPVDKFATSTGQPTNAVFG-FTSMLANLLRDEEPTHVAVAFDVGRTTFRTEQYEA 92
Query: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198
YK +R A+ RG+V I VL +VPV++ EADD++ATL Q
Sbjct: 93 YKGNR-------DATPEPFRGQVA----VIQRVLATMHVPVLEKPHFEADDILATLSRQA 141
Query: 199 LQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258
+G + +V + D+D QL+++DV ++ P++ + + T A+Y P L
Sbjct: 142 RAQGMQVLVCTGDRDAFQLVNDDVTVLYPVKGVSELARMTPAAVEAKYGVPPERYPDLAA 201
Query: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318
+VG+ D +PG VPG G KTA K + ++ LE +L +A K +
Sbjct: 202 LVGESSDNLPG----VPGVGPKTAAKWITQYDGLEGILA----------HADAVTGKAGE 247
Query: 319 YLRRNYEVLALRR 331
LR N E + L R
Sbjct: 248 SLRENLEQVRLNR 260
>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
Length = 899
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 133 RQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSH---------QFILDVLGKCNVPVVKIE 183
R P++ A RQ S+R+ + RS +VL + V+
Sbjct: 57 RDEAPTHIAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAP 116
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T + +
Sbjct: 117 GFEADDIIATLATQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVV 176
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + GD D +PGI PG G KTA K + ++GSL+ L++
Sbjct: 177 EKYGLTPVQYPDFAALRGDPSDNLPGI----PGVGEKTASKWIVEYGSLQGLVD 226
>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
Length = 936
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 25/206 (12%)
Query: 98 SLQSFGRWLSLFFDQVSHADPV--IAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQR 155
++ F L + + S AD +AV +G R + YKA+R +L
Sbjct: 41 AVSGFVNMLQRYVENNSGADAATHVAVIFDKGSHTFRNDMYDQYKANREAMPEELRPQIP 100
Query: 156 FSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFK 215
+R D N+ ++EG EADD+IATL Q + G R + S DKD
Sbjct: 101 LTR-----------DATRAFNIACEEVEGFEADDIIATLAHQARRAGGRVTIVSSDKDLM 149
Query: 216 QLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHV 273
QL+ + V+++ P+++ +DR + ++ P + ++ + GD VD VPG
Sbjct: 150 QLVGDGVEMLDPMKNKRIDRDGVFE------KFGVFPDRVVDVQALAGDSVDNVPG---- 199
Query: 274 VPGFGRKTALKLLKKHGSLENLLNAA 299
PG G KTA L+ + G LE+LL A
Sbjct: 200 APGIGIKTAALLINEFGDLESLLERA 225
>gi|451817711|ref|YP_007453912.1| DNA polymerase I [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451783690|gb|AGF54658.1| DNA polymerase I [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 867
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 34/232 (14%)
Query: 80 KRVFFLDVNPL---CYEGSRPSLQSFG-------RWLSLFF---DQVSHADPVIAVFDGE 126
K++ LD N L + P S G ++++ F D++ + D +IA FD +
Sbjct: 2 KKLLILDSNSLMNRAFYALPPLTNSDGINTNAIYGFINMLFKIKDEI-NPDSIIATFDLK 60
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF--ILDVLGKCNVPVVKIEG 184
T R + YKA R K +L + QF I D+ + + +IEG
Sbjct: 61 APT-FRHKEYAEYKAGRNKMPPEL-------------AEQFPIIKDLFKLMGIKIFEIEG 106
Query: 185 HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIA 244
EADD+I T+ + + DKD QL S+ ++++ + + + Y K +I
Sbjct: 107 FEADDLIGTVSKFAENNATEVAIVTGDKDALQLASDSTKVIITKKGVSETAVYDSKTFID 166
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
++ P + ++ ++GD D +PG VPG G KTA KL+K++GS+E ++
Sbjct: 167 EFEVTPTQFIDVKGLMGDKSDNIPG----VPGVGEKTAFKLIKEYGSVEEVM 214
>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
Length = 1032
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 23/203 (11%)
Query: 129 TEH--RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
+EH R QL P YKAHR L +F+ I + + ++P ++ G E
Sbjct: 92 SEHTFRNQLYPDYKAHRPPAPDDLIP--QFA---------LIREAVRAFDLPCLEQSGFE 140
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD+IAT V + ++G A + S DKD QL+++ V + ++D + I ++
Sbjct: 141 ADDLIATYVREACERGATATIVSSDKDLMQLVTDCVTMYDTMKD----RRIGIAEVIEKF 196
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGR 306
P + ++ + GD VD VPG VPG G KTA +L+ ++G L+ LL A + +
Sbjct: 197 GVPPEKVVEVQALAGDSVDNVPG----VPGIGIKTAAQLINEYGDLDTLLARAG--EIKQ 250
Query: 307 DYAQEALTKHADYLRRNYEVLAL 329
+EAL ++A+ R + +++ L
Sbjct: 251 PKRREALIENAEKARISRQLVLL 273
>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
Length = 918
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 24/216 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ VFD +G T R + YKA R L R ++ H+ I+ +G +P
Sbjct: 58 IAVVFDAKGKT-FRNDMYGEYKAQRPPMPDDL-------RNQIEPLHR-IIHAMG---LP 105
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ I G EADDVI T+ Q ++G ++++ DKD QL++E V L+ + D +
Sbjct: 106 LISISGVEADDVIGTIALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTD----TIMG 161
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-- 296
+ +Y P + ++GD D +PG+ PG G KTAL +L GS+EN+L
Sbjct: 162 PEEVKTKYGVGPDRIIDFLALMGDKSDNIPGL----PGVGEKTALAMLLGMGSVENILAD 217
Query: 297 --NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ V G + ++AD L+ +YE+ ++
Sbjct: 218 PQSVVEVGFRGSKTMPAKIIENADMLKLSYELATIK 253
>gi|429732469|ref|ZP_19267079.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
gi|429155977|gb|EKX98619.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 933
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|415728162|ref|ZP_11471735.1| DNA polymerase I [Gardnerella vaginalis 6119V5]
gi|388065300|gb|EIK87791.1| DNA polymerase I [Gardnerella vaginalis 6119V5]
Length = 1024
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 27/219 (12%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVL 172
D + FD +GGT R ++LP YK R ++ L QL I +L
Sbjct: 69 DRLAIAFDVKGGT-FRNKMLPQYKGTREAAPQELLSQLP---------------LIQQML 112
Query: 173 GKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLD 232
++ ++ G+E DDVI TL GYR +V S D+D QLI +++ ++ P Q
Sbjct: 113 RSLDITYIEKPGYEGDDVIGTLATMGADAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFK 172
Query: 233 RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL 292
+ +YN P L + G+ D +PG VPG G A K + + GSL
Sbjct: 173 DLKQMNAAAVLEKYNVTPKQYPDLAALRGETADNIPG----VPGVGDGYAAKWINQFGSL 228
Query: 293 ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
E++++ A T + EAL ++ D +R N V AL R
Sbjct: 229 EDIISHAGEITGKKG---EALRENIDQVRLNRRVNALVR 264
>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
Length = 881
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 30/254 (11%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLP 137
R FF L V+ G + + +G +LS+ + +S P V FD T R ++ P
Sbjct: 16 RAFFALPVDNFSTTGGQTTNAVYG-FLSMLSNILSEEKPTHVAVAFDVARET-FRNEIFP 73
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQ 197
YKA R K + RG+V I VL + + ++ + +EADD+IATL Q
Sbjct: 74 EYKAQREKTPEEF-------RGQV----PLIQQVLKEMGIVTLEKDNYEADDIIATLATQ 122
Query: 198 VLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLR 257
+G+ ++ + D+D QL+++ ++ P++ + +T +Y P
Sbjct: 123 AKPEGFETLIVTGDRDSFQLVNDTTTVLYPMRGVTTLHRFTPAAIEKKYGLTPTQYPDFA 182
Query: 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHA 317
+ GD D +PGI PG G KTA K + ++G+L NL+ D+A E K
Sbjct: 183 ALRGDPSDNLPGI----PGVGEKTATKWIVQYGTLANLI----------DHADEIRGKVG 228
Query: 318 DYLRRNYEVLALRR 331
D R + L R
Sbjct: 229 DNFRERVANVQLNR 242
>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
Length = 930
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ I ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVIEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLADNKDNAVLSYELATIK 253
>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
Length = 930
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNAAGEPTSAMYG-VLNMLKSLISQVQPTHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGIEADDVIGTLALQASRLGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDR------EGVIEKYGIPPELIIDYLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAEI 214
>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|444345405|ref|ZP_21153423.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|443542932|gb|ELT53212.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 933
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|398803654|ref|ZP_10562672.1| DNA polymerase I [Polaromonas sp. CF318]
gi|398095907|gb|EJL86238.1| DNA polymerase I [Polaromonas sp. CF318]
Length = 943
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 25/217 (11%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
AD VFD +G T R L P YKA R L R +V H+ ++ +LG
Sbjct: 58 ADFAACVFDAKGPT-FRDALYPEYKAQRSPMPDDL-------RSQVEPIHE-VVRLLG-- 106
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS 235
V+ + G EADDVI TL +G +++S DKD QL+ E++ ++ + D R
Sbjct: 107 -WKVLDVPGVEADDVIGTLACLASSQGIEVIISSGDKDLSQLVDENITVIDTMNDRRR-- 163
Query: 236 FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+ A++ P + + +VGD VD VPG VP G KTA+K L ++GSL+ L
Sbjct: 164 --DVAGVEAEFGVPPRLMIDYQALVGDAVDNVPG----VPKVGPKTAVKWLLEYGSLDAL 217
Query: 296 L-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
+ A ++ V E L + D+L + E+L +++
Sbjct: 218 VARAGEIKGV----VGENLRQSLDWLPKGRELLTIKK 250
>gi|338730077|ref|YP_004659469.1| DNA polymerase I [Thermotoga thermarum DSM 5069]
gi|335364428|gb|AEH50373.1| DNA polymerase I [Thermotoga thermarum DSM 5069]
Length = 893
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 32/235 (13%)
Query: 68 FCGNGLEKTKSKKRVFFLDVNPLCYEGSRPSLQSFG--RWLSLFF-DQVSHADPVIAVFD 124
F G GL R ++ L P+ ++G R + F + V D V V D
Sbjct: 7 FDGTGL-----TYRAYYALDQSLSTSTGIPTNATYGVMRMMIKFLKENVKIGDCVAFVMD 61
Query: 125 GEGGTEHRRQLLPSYKAHRR----KFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVV 180
+ T +R ++L +YKA R+ ++Q+ QR ++ LG V V+
Sbjct: 62 KKTKT-YRHEILATYKAQRKPAPDAMIQQIPYIQR------------AVEALG---VKVL 105
Query: 181 KIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240
EG EADDVIATL + ++ S DKD QL+ + +++ P + + + K
Sbjct: 106 AYEGCEADDVIATLAKKGRDIFDEVIIVSGDKDVLQLVDDKIKVFRPTKGISELELFDAK 165
Query: 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
++ +P + L ++GD VD VPG++ G G KTA++L+ K+GS+EN+
Sbjct: 166 KVKERFGVEPSQIVDLLALIGDSVDNVPGVK----GIGEKTAVELVTKYGSIENI 216
>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
Length = 830
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 32/254 (12%)
Query: 81 RVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYK 140
R FF + L P +G SL D VI VFD + + R Q +YK
Sbjct: 22 RTFF-ALKGLTTSRGEPVQAVYGFAKSLLKALREDGDVVIVVFDAKAPS-FRHQTYEAYK 79
Query: 141 AHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVG 196
A R F RQL + ++D+LG + +++ G EADDV+ATL
Sbjct: 80 AGRAPTPEDFPRQLALIKE------------MVDLLG---LERLEVPGFEADDVLATLAK 124
Query: 197 QVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSL 256
+ ++GY + + D+D QL+SE + ++ P L T + +Y P +
Sbjct: 125 KAEKEGYEVRILTADRDLYQLLSERISILHPEGYL-----ITPEWLWEKYGLKPSQWVDY 179
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKH 316
R + GD D +PG++ G G KTA KL+++ GSLENLL + V +E + H
Sbjct: 180 RALAGDPSDNIPGVK----GIGEKTAAKLIREWGSLENLLK--HLEQVKPASVREKILSH 233
Query: 317 ADYLRRNYEVLALR 330
+ L+ + E+ +R
Sbjct: 234 MEDLKLSLELSRVR 247
>gi|415770541|ref|ZP_11484884.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348656714|gb|EGY74321.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 933
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|444334877|ref|ZP_21150292.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|443549787|gb|ELT58415.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 933
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|424034473|ref|ZP_17773878.1| DNA polymerase I [Vibrio cholerae HENC-01]
gi|408873076|gb|EKM12283.1| DNA polymerase I [Vibrio cholerae HENC-01]
Length = 930
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ + ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVVEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLVDNKDNAMLSYELATIK 253
>gi|424035698|ref|ZP_17774881.1| DNA polymerase I [Vibrio cholerae HENC-02]
gi|408897485|gb|EKM33248.1| DNA polymerase I [Vibrio cholerae HENC-02]
Length = 930
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ + ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVVEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLVDNKDNAMLSYELATIK 253
>gi|424048318|ref|ZP_17785872.1| DNA polymerase I [Vibrio cholerae HENC-03]
gi|408882953|gb|EKM21748.1| DNA polymerase I [Vibrio cholerae HENC-03]
Length = 930
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ + ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVVEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLVDNKDNAMLSYELATIK 253
>gi|315125371|ref|YP_004067374.1| DNA polymerase I [Pseudoalteromonas sp. SM9913]
gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas sp. SM9913]
Length = 911
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 29/222 (13%)
Query: 113 VSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
+ DP ++ VFD +G T R + YKA+R L R ++ H I+
Sbjct: 50 IKQYDPSHMVVVFDAKGKT-FRNDMYSEYKANRPPMPDDL-------RTQIAPLHS-IIK 100
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
+G P++ IEG EADDVI T ++ +V++ DKD QL++E V L+ + D
Sbjct: 101 AMG---FPLISIEGVEADDVIGTFARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTD 157
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
S + + ++ P + ++GD VD +PG++ G G KTA+K L+K+G
Sbjct: 158 ----SISDPETVVEKFGVGPELIIDYLALMGDKVDNIPGVE----GCGPKTAVKWLQKYG 209
Query: 291 SLENLL-NAAAVR-TVGRDYAQEALTKHADYLRRNYEVLALR 330
SL+ ++ NA+ ++ +G E L K D+L +YE+ ++
Sbjct: 210 SLQGVIDNASDIKGKIG-----EKLAKAIDHLPLSYELATIK 246
>gi|409435645|ref|ZP_11262853.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Rhizobium mesoamericanum STM3625]
gi|408752403|emb|CCM74000.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Rhizobium mesoamericanum STM3625]
Length = 956
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I N+P ++
Sbjct: 24 IFDYSAKT-FRKDLYDAYKANRSTPPEELIPQ-----------FGLIRHATRAFNLPCIE 71
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL++ +V + ++D +
Sbjct: 72 TEGFEADDIIATYARQAEALGADVTIVSSDKDLMQLVTPNVHMYDSMKD----KQIGIPD 127
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAV 301
I ++ P + L+ + GD VD VPGI PG G KTA +LL ++G L+ LL A
Sbjct: 128 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLAEYGDLDALLERAT- 182
Query: 302 RTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ ++ ++ + ++AD R + E++ LR
Sbjct: 183 -EIKQEKRRQTIIENADKARLSRELVRLR 210
>gi|388602773|ref|ZP_10161169.1| DNA polymerase I [Vibrio campbellii DS40M4]
Length = 930
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ + ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVVEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLVDNKDNAMLSYELATIK 253
>gi|416108059|ref|ZP_11590897.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348004683|gb|EGY45181.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 431
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNSAGEPTGAMYGV-LNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAQI 214
>gi|339445483|ref|YP_004711487.1| hypothetical protein EGYY_19930 [Eggerthella sp. YY7918]
gi|338905235|dbj|BAK45086.1| hypothetical protein EGYY_19930 [Eggerthella sp. YY7918]
Length = 875
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 96 RPSLQSFGRWLSLF-FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQ 154
RP+ FG L F +++ D +I FD G R + + YKA R L
Sbjct: 31 RPTNAVFGFLAMLLKFIDIANPDALICAFDA-GRPAFRMEAIKQYKAQRPPMDDDLKVQ- 88
Query: 155 RFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDF 214
I ++L NVPVV+I+G E DDV+ T+ + GY ++ + DKD
Sbjct: 89 ----------FPIIEELLEAMNVPVVRIKGWEGDDVLGTIAARDEALGYETLLVTGDKDA 138
Query: 215 KQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVV 274
QL + ++V + + + Y + + +Y P + GD D +PG V
Sbjct: 139 YQLATSKTRIVTTKKGITDVAIYGPEEVLDRYGVTPAQVPDFLGLKGDSSDNIPG----V 194
Query: 275 PGFGRKTALKLLKKHGSLENL 295
PG G K A KLL+++GSLE L
Sbjct: 195 PGIGEKGAAKLLQQYGSLEGL 215
>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
Length = 834
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 31/207 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKA-LSFRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDCVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLR 321
LL + V + +E + H + LR
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLR 242
>gi|416054127|ref|ZP_11579105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348003777|gb|EGY44333.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 977
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 71 PLTNSAGEPTGAMYG-VLNMLKSLISQVQPSHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 128
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ ++G EADDVI TL Q + G + +
Sbjct: 129 PDDL-------RKQIQPLH----DMIRALGIPLLVVDGVEADDVIGTLASQASKNGQKVL 177
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR I +Y P + ++GD
Sbjct: 178 ISTGDKDMAQLVDDNIMLINTMNNSLLDRAGV------IEKYGIPPELIIDYLALMGDSS 231
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 232 DNIPG----VAGVGEKTALGLLQGIGSMAQI 258
>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
Length = 935
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNAAGEPTSAMYG-VLNMLKSLISQVQPTHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGIEADDVIGTLALQASSLGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDR------EGVIEKYGIPPELIIDYLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
D +PG V G G KTAL LL+ GS+ +
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSMAEI 214
>gi|417844401|ref|ZP_12490445.1| DNA polymerase I [Haemophilus haemolyticus M21639]
gi|341956854|gb|EGT83270.1| DNA polymerase I [Haemophilus haemolyticus M21639]
Length = 935
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 27/208 (12%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 27 PLTNAAGEPTGAMYG-VLNMLKSLISQVQPTHIAVVFDAKGKT-FRDEMFEQYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H D++ +P++ +EG EADDVI TL Q + G + +
Sbjct: 85 PDDL-------RKQIQPLH----DMIRALGIPLLVVEGIEADDVIGTLALQASRLGKKVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDV 264
+++ DKD QL+ +++ L+ + + LDR + I +Y P + ++GD
Sbjct: 134 ISTGDKDMAQLVDDNIMLINTMNNSLLDR------EGVIEKYGIPPELIIDYLALMGDSA 187
Query: 265 DGVPGIQHVVPGFGRKTALKLLKKHGSL 292
D +PG V G G KTAL LL+ GS+
Sbjct: 188 DNIPG----VAGVGEKTALGLLQGIGSM 211
>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
Length = 920
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 99/231 (42%), Gaps = 33/231 (14%)
Query: 81 RVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQVSHADPVIA---------VFDGE 126
++F LD L Y P + S G S V+ + V+ FD
Sbjct: 3 KLFLLDAYALIYRSYYAFIRSPRINSKGLNTSAIMGFVNTLNEVLTKENPTHIGVAFDL- 61
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G R P YKA R + + + S I D+L N+P++++EG E
Sbjct: 62 -GKTFRHDAFPEYKAQREE-----------TPEDIKLSVPIIKDILRAFNIPILQVEGFE 109
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADDVI TL + G + +PDKD+ QLI E V + P + K A+Y
Sbjct: 110 ADDVIGTLAKKAGATGVDTYMLTPDKDYGQLIGEHVFMYRPRHG-GGYEVLGEKEVEAKY 168
Query: 247 N-CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + L ++GD D PG PG G KTA KL+ ++GS+E LL
Sbjct: 169 GITSPLQVIDLLALMGDSADNFPG----CPGVGEKTAAKLISEYGSIEELL 215
>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
Length = 904
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD GGT R + P YKAHR L A + I + PV+
Sbjct: 57 VFDARGGT-FRDDIYPEYKAHRPSMPEDLAAQV-----------EPIHAAIRALGWPVLA 104
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLV--MPLQDLDRWSFYTL 239
+EG EADDVIATL + + G +V++ DKD QL++ V LV M + LD
Sbjct: 105 VEGVEADDVIATLARRATEAGLHTIVSTGDKDLAQLVNPQVTLVNTMTGEVLDETGV--- 161
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NA 298
+ ++ + +VGD VD VPG+ V P KTA+K L + GS+E+L+ NA
Sbjct: 162 ---VNKFGVPADRIVDYLMLVGDTVDNVPGVTKVGP----KTAVKWLSEFGSIEHLIQNA 214
Query: 299 AAVRTVGRDYAQEAL 313
++ V + +EA+
Sbjct: 215 DGIKGVAGNNLREAI 229
>gi|389573843|ref|ZP_10163914.1| DNA polymerase I [Bacillus sp. M 2-6]
gi|388426413|gb|EIL84227.1| DNA polymerase I [Bacillus sp. M 2-6]
Length = 879
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R + YK R+K +L+ F R ++L V
Sbjct: 56 MLVAFDA-GKTTFRHETFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQVK 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ +EADD+I TL + + G+ + S DKD QL ++ + + + + +YT
Sbjct: 104 RYELPQYEADDIIGTLAVEAEKDGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ ++ENLL+
Sbjct: 164 PAHIEEKYGLRPDQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFETVENLLD 218
>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
Length = 935
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH + VFD +G T R + YKA R L R ++ H+ I+
Sbjct: 68 QPSH---IAVVFDAKGKT-FRNDMYSEYKAQRPPMPDDL-------RSQIEPLHR-IIRA 115
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
LG +P++ I G EADDVI T+ Q + ++++ DKD QL+ E+V L+ + D
Sbjct: 116 LG---LPLISISGVEADDVIGTIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTD- 171
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
+ + ++ P + L ++GD D +PG+ PG G KTAL +L GS
Sbjct: 172 ---TIMGPEEVAIKFGVGPDRIIDLLALMGDKADNIPGL----PGVGEKTALAMLTGAGS 224
Query: 292 LENLL----NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ NLL A + G + ++AD L+ +YE+ ++
Sbjct: 225 VSNLLAEPEKVAELGFRGSKTMAAKIIENADMLKLSYELATIK 267
>gi|444424781|ref|ZP_21220233.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241904|gb|ELU53422.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 930
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ + ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVVEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLVDNKDNAMLSYELATIK 253
>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
Length = 950
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 25/222 (11%)
Query: 111 DQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
D +HA +FD T R ++ P+YK +R L +R D
Sbjct: 58 DAPTHA---AVIFDYSSKT-FRNEIYPAYKENRPPAPEDLRPQFPLTR-----------D 102
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
N+ ++IEG+EADD+IATL Q + G R + S DKD QL+ + V ++ +++
Sbjct: 103 ATRAFNLACLEIEGYEADDIIATLARQAREAGGRVTIISSDKDLMQLVGDGVVMLDAMKN 162
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
+ + A++ P+ + ++ + GD VD VPG PG G KTA +L+ +G
Sbjct: 163 I----VIGPEEVEAKFGVRPNRVIDVQALAGDSVDNVPG----APGIGIKTAAQLIADYG 214
Query: 291 SLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRRY 332
LE LL A + + +E L AD +R + ++ L +
Sbjct: 215 DLETLLERAG--EIKQPKRRETLVNFADQIRISKRLVTLEDH 254
>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
Length = 930
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKC 175
+D + VFD +G T R + P YKA+R L R ++ H +V+
Sbjct: 55 SDRIAVVFDAKGKT-FRDDMYPEYKANRPPMPDDL-------RCQIEPLH----NVIRAM 102
Query: 176 NVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDR 233
+P++ I G EADDVI TL Q Q+G ++++ DKD QL+ ++V L+ + + +DR
Sbjct: 103 GLPLICIPGVEADDVIGTLAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDR 162
Query: 234 WSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSL- 292
+ + ++ P + ++GD VD +PG VPG G KTA LL+ G L
Sbjct: 163 ------EGVVEKFGIPPELIIDYLALMGDKVDNIPG----VPGVGDKTATALLQGIGGLT 212
Query: 293 ---ENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
ENL + AA+ G + L + D +YE+ ++
Sbjct: 213 KLYENLDDIAALGFRGSKTMAKKLVDNKDNAMLSYELATIK 253
>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 849
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD G R+ YKA+R+ L + R +++ N
Sbjct: 50 DYVAVAFDKRGRA-ARKSEYEEYKANRKPMPDSLQIQIPYVR-----------EIISALN 97
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWS- 235
+P+++ EG+EADDVI TLV ++ + V+ + D+D QL+ ++V + + D+ +
Sbjct: 98 IPILEYEGYEADDVIGTLVNRLKNQNLEIVIITGDRDTLQLLDKNVIVKIVTTRFDKTTE 157
Query: 236 -FYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
YT+++ +Y H + + +VGD D +PG++ G G KTA+KLL+++ +LEN
Sbjct: 158 DLYTVENVKEKYGVFAHQVVDYKALVGDASDNIPGVK----GIGGKTAIKLLEEYQTLEN 213
Query: 295 L 295
+
Sbjct: 214 I 214
>gi|334366159|ref|ZP_08515100.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
Length = 958
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 41/238 (17%)
Query: 80 KRVFFLDVNPLCYEG-----SRPSLQSFGRWLSLFFDQV---------SHADPVIAVFDG 125
K++F +D L ++ RP G S+ F V D + FD
Sbjct: 2 KKLFLVDAYALIFKYYYAFLGRPMRNRAGMNTSVVFGFVKFLRDIQKRERPDLLGVAFDP 61
Query: 126 EGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH 185
+GG+ RR++ P YKA+R + + S ++ VL +P++++EG+
Sbjct: 62 KGGS-FRREVFPEYKANRAETPEDILLSV-----------PYVKRVLEAMCIPILEVEGY 109
Query: 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM------PLQDLDRWSFYTL 239
EADDVI TL + ++ GY + +PDKD+ QL+ ++ ++ ++ +DR S
Sbjct: 110 EADDVIGTLSQKGVEAGYEVFMVTPDKDYGQLVRDNCKIYKQKGADGSIEIVDRDSIRE- 168
Query: 240 KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
K+ I DP + + GD D +PG VPG G K+A KL+++ G++EN+L+
Sbjct: 169 KYGID----DPVLVRDILALWGDASDNIPG----VPGIGEKSACKLVQEWGTVENILD 218
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,190,118,943
Number of Sequences: 23463169
Number of extensions: 214192015
Number of successful extensions: 500761
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4402
Number of HSP's successfully gapped in prelim test: 1412
Number of HSP's that attempted gapping in prelim test: 486270
Number of HSP's gapped (non-prelim): 6179
length of query: 332
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 189
effective length of database: 9,003,962,200
effective search space: 1701748855800
effective search space used: 1701748855800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)