BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020010
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 45/270 (16%)
Query: 77 KSKKRVFFLDVNPLCYEG-----------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDG 125
+ K RV +D + L Y P +G SL D VI VFD
Sbjct: 9 EPKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDA 68
Query: 126 EGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+ + R + YKA R F RQL + ++D+LG + +
Sbjct: 69 KAPS-FRHEAYGGYKAGRAPTPEDFPRQLALIKE------------LVDLLGLARL---E 112
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G+EADDV+A+L + ++GY + + DKD QL+S+ + ++ P L T
Sbjct: 113 VPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYL-----ITPAW 167
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAA 300
+Y P R + GD+ D +PG++ G G KTA KLL++ GSLE LL N
Sbjct: 168 LWEKYGLRPDQWADYRALTGDESDNLPGVK----GIGEKTARKLLEEWGSLEALLKNLDR 223
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ R E + H D L+ ++++ +R
Sbjct: 224 LKPAIR----EKILAHMDDLKLSWDLAKVR 249
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 45/270 (16%)
Query: 77 KSKKRVFFLDVNPLCYEG-----------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDG 125
+ K RV +D + L Y P +G SL D VI VFD
Sbjct: 9 EPKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDA 68
Query: 126 EGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+ + R + YKA R F RQL + ++D+LG + +
Sbjct: 69 KAPS-FRHEAYGGYKAGRAPTPEDFPRQLALIKE------------LVDLLGLARL---E 112
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G+EADDV+A+L + ++GY + + DKD QL+S+ + ++ P L T
Sbjct: 113 VPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYL-----ITPAW 167
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAA 300
+Y P R + GD+ D +PG++ G G KTA KLL++ GSLE LL N
Sbjct: 168 LWEKYGLRPDQWADYRALTGDESDNLPGVK----GIGEKTARKLLEEWGSLEALLKNLDR 223
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ R E + H D L+ ++++ +R
Sbjct: 224 LKPAIR----EKILAHMDDLKLSWDLAKVR 249
>pdb|1UT5|A Chain A, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease
pdb|1UT5|B Chain B, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease
pdb|1UT8|A Chain A, Divalent Metal Ions (zinc) Bound To T5 5'-exonuclease
pdb|1UT8|B Chain B, Divalent Metal Ions (zinc) Bound To T5 5'-exonuclease
Length = 291
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLG 173
S++ V +G + R + LP YK +R + Q T + + + +++ D
Sbjct: 57 SYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEE---KALDEQFFEYLKDAFE 113
Query: 174 KCNV--PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
C P I G EADD+ A +V + + S D D+ L+++ V
Sbjct: 114 LCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS-------- 165
Query: 232 DRWSFYTLKHY-----IAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
R+SF T + Y +N D + +SL+ I+GD D + G++ G G K +
Sbjct: 166 -RFSFTTRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVE----GIGAKRGYNI 220
Query: 286 LKKHGSLENLLN 297
+++ G++ ++++
Sbjct: 221 IREFGNVLDIID 232
>pdb|1EXN|A Chain A, T5 5'-Exonuclease
pdb|1EXN|B Chain B, T5 5'-Exonuclease
Length = 290
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLG 173
S++ V +G + R + LP YK +R + Q T + + + +++ D
Sbjct: 56 SYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEE---KALDEQFFEYLKDAFE 112
Query: 174 KCNV--PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
C P I G EADD A +V + + S D D+ L+++ V
Sbjct: 113 LCKTTFPTFTIRGVEADDXAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS-------- 164
Query: 232 DRWSFYTLKHY-----IAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
R+SF T + Y +N D + +SL+ I GD D + G++ G G K +
Sbjct: 165 -RFSFTTRREYHLRDXYEHHNVDDVEQFISLKAIXGDLGDNIRGVE----GIGAKRGYNI 219
Query: 286 LKKHGSLENLLN 297
+++ G++ ++++
Sbjct: 220 IREFGNVLDIID 231
>pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a
pdb|1XO1|B Chain B, T5 5'-Exonuclease Mutant K83a
Length = 291
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLG 173
S++ V +G + R + LP Y +R + Q T ++ + +++ D
Sbjct: 57 SYSARTTIVLGDKGKSVFRLEHLPEYAGNRDEKYAQRTEEEK---ALDEQFFEYLKDAFE 113
Query: 174 KCNV--PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
C P I G EADD+ A +V + + S D D+ L+++ V
Sbjct: 114 LCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS-------- 165
Query: 232 DRWSFYTLKHY-----IAQYNCDPHSE-LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKL 285
R+SF T + Y +N D + +SL+ I+GD D + G++ G G K +
Sbjct: 166 -RFSFTTRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVE----GIGAKRGYNI 220
Query: 286 LKKHGSLENLLN 297
+++ G++ ++++
Sbjct: 221 IREFGNVLDIID 232
>pdb|1TFR|A Chain A, Rnase H From Bacteriophage T4
pdb|3H8J|A Chain A, Native T4 Rnase H In The Absence Of Divalent Metal Ions
Length = 305
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ D RR YK +R K + T G SH+ I ++
Sbjct: 66 IVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDWE---GYFESSHKVIDELKAYMPYI 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
V+ I+ +EADD IA LV + +G++ ++ S D DF QL
Sbjct: 123 VMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFTQL 161
>pdb|3H8S|A Chain A, Structure Of D19n T4 Rnase H In The Presence Of Divalent
Mag
Length = 305
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ D RR YK +R K + T G SH+ I ++
Sbjct: 66 IVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDWE---GYFESSHKVIDELKAYMPYI 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
V+ I+ +EADD IA LV + +G++ ++ S D DF QL
Sbjct: 123 VMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFTQL 161
>pdb|2IHN|A Chain A, Co-Crystal Of Bacteriophage T4 Rnase H With A Fork Dna
Substrate
pdb|3H7I|A Chain A, Structure Of The Metal-Free D132n T4 Rnase H
pdb|3H8W|A Chain A, Structure Of D132n T4 Rnase H In The Presence Of Divalent
Ma
Length = 305
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ D RR YK +R K + T G SH+ I ++
Sbjct: 66 IVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDWE---GYFESSHKVIDELKAYMPYI 122
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
V+ I+ +EA+D IA LV + +G++ ++ S D DF QL
Sbjct: 123 VMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQL 161
>pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix
pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix
pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix
pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix
Length = 214
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 270 IQHVVPGFGRKTALKLLKKHGSLENLLNA-----AAVRTVGRDYAQE 311
I PG GR+TA ++L++ GSLE A + V +G A+E
Sbjct: 156 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEE 202
>pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna
pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna
Length = 219
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 270 IQHVVPGFGRKTALKLLKKHGSLENLLNA-----AAVRTVGRDYAQE 311
I PG GR+TA ++L++ GSLE A + V +G A+E
Sbjct: 163 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEE 209
>pdb|2GW6|A Chain A, Nmr Structure Of The Human Trna Endonuclease Sen15 Subunit
pdb|2GW6|B Chain B, Nmr Structure Of The Human Trna Endonuclease Sen15 Subunit
Length = 123
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 245 QYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299
+ NC EL L C+VG +++G G+Q VVP T + H + +L A+
Sbjct: 44 EVNCVGLPELQLICLVGTEIEG-EGLQTVVP-----TPITASLSHNRIREILKAS 92
>pdb|2LE1|A Chain A, Solution Nmr Structure Of Tfu_2981 From Thermobifida
Fusca, Northeast Structural Genomics Consortium Target
Tfr85a
Length = 151
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 200 QKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCI 259
+ R V PD F V V+P D + + A ++C P + L +
Sbjct: 70 ESARRLVYTMPDPPFPITNHRAVLEVVPRDDR-----HCTVVWTAMFDCSPETARELESV 124
Query: 260 VGDDVDGVPGIQHVVPGFGR 279
+GD V V G+ + +GR
Sbjct: 125 IGDGVFAV-GLNALAERYGR 143
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 116 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 164
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 143 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 191
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 115 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 163
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 113 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 161
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 121 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 169
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 111 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 159
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 108 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 156
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 115 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 163
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 115 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 163
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 194 LVGQVLQKG-YRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
++ +V++KG + P K+ K++I ED L + L D S+YT++
Sbjct: 109 MLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQ 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,619,665
Number of Sequences: 62578
Number of extensions: 385505
Number of successful extensions: 949
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 43
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)