BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020010
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O67550|EX53_AQUAE 5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3
SV=1
Length = 289
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 23/215 (10%)
Query: 84 FLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKA 141
F + PL P+ +G +L + F + P ++ VFD T+ R ++ YK
Sbjct: 17 FFALPPLSTSKGFPTNAIYG-FLRMLFSLIKKERPQYLVVVFDAPAKTK-REKIYADYKK 74
Query: 142 HRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQK 201
R K L I ++L +P++++ G+EADDVIA L + QK
Sbjct: 75 QRPKAPDPLKVQ-----------IPVIKEILKLAGIPLLELPGYEADDVIAYLAEKFSQK 123
Query: 202 GYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG 261
G++ + SPDKD QL+SE+V ++ P+ D +T + I ++ +P +VG
Sbjct: 124 GFKVKIYSPDKDLLQLVSENVLVINPMND----EVFTKERVIKKFGVEPQKIPDYLALVG 179
Query: 262 DDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
D VD VPGI+ G G KTA+ +LKK+GS+EN+L
Sbjct: 180 DKVDNVPGIE----GVGPKTAINILKKYGSVENIL 210
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPEL-------------SEQFPLLRELLRAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P ++E +EADD+I TL + Q+G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEP 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + +Y P + L+ ++GD D +PG VPG G KTA+KLL++ G++EN+L
Sbjct: 160 YTPEAVREKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLRQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
A++ + + +E L +H + + ++ A+RR
Sbjct: 216 --ASIDEIKGEKLKETLRQHREMALLSKKLAAIRR 248
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 15/198 (7%)
Query: 138 SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD----VLGKCNVPVVKIEGHEADDVIAT 193
++ R+ F + A + +R + +D VLG + V G EADD+IAT
Sbjct: 72 AFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIAT 131
Query: 194 LVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSE 253
L Q +GYR +V + D+D QL+S DV ++ P + + + +T + I +Y P
Sbjct: 132 LATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQY 191
Query: 254 LSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAAVR-TVGRDYAQE 311
L + GD D +PGI PG G KTA K + +GSL+ L+ N +VR VG E
Sbjct: 192 PDLAALRGDPSDNLPGI----PGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVG-----E 242
Query: 312 ALTKHADYLRRNYEVLAL 329
AL H + RN E+ L
Sbjct: 243 ALRTHLASVVRNRELTEL 260
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
+ A FD T R Q P YKA+R + ++ +VLG +
Sbjct: 68 IAAAFDVSRQT-FRLQRYPEYKANRSSTPDEFAGQIDITK-----------EVLGALGIT 115
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
V+ G EADD+IATL Q +GYR +V + D+D QL+S+DV ++ P + + + +T
Sbjct: 116 VLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFT 175
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-N 297
+ + +Y P + GD D +PGI PG G KTA K + ++GSL +L+ N
Sbjct: 176 PEAVVEKYGLTPRQYPDFAALRGDPSDNLPGI----PGVGEKTAAKWIAEYGSLRSLVDN 231
Query: 298 AAAVR-TVGRDYAQEALTKHADYLRRNYEVLALRR 331
AVR VG +AL + + RN E+ L R
Sbjct: 232 VDAVRGKVG-----DALRANLASVVRNRELTDLVR 261
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R Q+ P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHQIYPDYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIIQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGAHVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL++E++++ PL + + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMTENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL + ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FTSMLLKLLSDFKPKHVAVVFDS-GGKNFRHYIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLIVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFATKTAALGENVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+ S DKD QL+SE++++ PL R + T + ++ + ++GD D
Sbjct: 132 IISSDKDLLQLMSENIKIYDPL----RGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1
SV=2
Length = 876
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 22/202 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL--DVLGKCN 176
++ FD G T R + YK R++ +L S QF L ++L
Sbjct: 54 ILVAFDA-GKTTFRHETFQDYKGGRQQTPPEL-------------SEQFPLLRELLKAYR 99
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
+P +++ +EADD+I T+ + ++G+ V S D+D QL S V + + + +
Sbjct: 100 IPAYELDHYEADDIIGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIES 159
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
YT + + +Y P + L+ ++GD D +PG VPG G KTA+KLLK+ G++EN+L
Sbjct: 160 YTPETVVEKYGLTPEQIVDLKGLMGDKSDNIPG----VPGIGEKTAVKLLKQFGTVENVL 215
Query: 297 NAAAVRTVGRDYAQEALTKHAD 318
A++ + + +E L ++ D
Sbjct: 216 --ASIDEIKGEKLKENLRQYRD 235
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+FD T R+ L +YKA+R +L I + N+P ++
Sbjct: 84 IFDYSAKT-FRKDLYDAYKANRSAPPEELIPQ-----------FGLIREATRAFNLPCIE 131
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
EG EADD+IAT Q G + S DKD QL+S +V + ++D +
Sbjct: 132 TEGFEADDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQ----IGIPD 187
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN-AAA 300
I ++ P + L+ + GD VD VPGI PG G KTA +LL+++G L+ LL A
Sbjct: 188 VIEKWGVPPEKMIDLQAMTGDSVDNVPGI----PGIGPKTAAQLLEEYGDLDTLLERATE 243
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ V R +E + + D R + +++ LR
Sbjct: 244 IKQVKR---RETILANIDMARLSRDLVRLR 270
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 31/216 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
V VFD + + R + +YKA R F RQL + ++D+LG
Sbjct: 63 VFVVFDAKAPS-FRHEAYEAYKAGRAPTPEDFPRQLALIKE------------LVDLLGF 109
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ ++ G+EADDV+ATL ++GY + + D+D QL+S+ V ++ P L
Sbjct: 110 TRL---EVPGYEADDVLATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLHPEGHL--- 163
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
T + +Y P + R +VGD D +PG++ G G KTALKLLK+ GSLEN
Sbjct: 164 --ITPEWLWQKYGLKPEQWVDFRALVGDPSDNLPGVK----GIGEKTALKLLKEWGSLEN 217
Query: 295 LLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
LL + V + +E + H + LR + E+ +R
Sbjct: 218 LLK--NLDRVKPENVREKIKAHLEDLRLSLELSRVR 251
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3
SV=1
Length = 880
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ FD G T R YK R+K +L+ F R ++L +
Sbjct: 56 MLVAFDA-GKTTFRHGTFKEYKGGRQKTPPELSEQMPFIR-----------ELLDAYQIS 103
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++E +EADD+I TL + G+ V S DKD QL ++ + + + + FYT
Sbjct: 104 RYELEQYEADDIIGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYT 163
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+H +Y P + ++ ++GD D +PG VPG G KTA+KLLK+ S+E LL +
Sbjct: 164 PEHVKEKYGLTPEQIIDMKGLMGDSSDNIPG----VPGVGEKTAIKLLKQFDSVEKLLES 219
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 23/212 (10%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P +G + S+ +S P V VFD GG R + P YKA+R
Sbjct: 25 PLTSPKGEPVGALYG-FASMLLKLLSDFKPKHVAVVFDS-GGKNFRHHIYPEYKANRPPP 82
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R DV N P+++ G+EADD+IAT + G V
Sbjct: 83 PEDLVVQLPLVR-----------DVASNLNFPILEKNGYEADDIIATFAAKTAALGEDVV 131
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
V S DKD QL+ E++++ PL + + T + ++ + ++GD D
Sbjct: 132 VISSDKDLLQLMGENIKIYDPL----KGKYITEDDVVKKFGTTSDKLREVMALIGDRSDN 187
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+PG VP G KTA L+ + GS+EN+ N+
Sbjct: 188 IPG----VPSIGPKTASSLITQFGSVENIFNS 215
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
VFD GG R ++ P YKA+R L A R DV N P+++
Sbjct: 59 VFDS-GGKNFRHEIYPEYKANRPPPPEDLIAQLPLVR-----------DVARNLNFPILE 106
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
G EADD+IAT + G VV S DKD QL++++V++ PL + + T +
Sbjct: 107 KNGFEADDIIATFAAKTASIGEEVVVISSDKDLLQLMNDNVKIYDPL----KAKYITEDN 162
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ ++ + ++GD D +PG VP G KTA L+ + G++EN+ N+
Sbjct: 163 VVEKFGVTSDKLREVMALIGDKSDNIPG----VPSIGPKTASSLITQFGTVENIFNS 215
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 43/234 (18%)
Query: 80 KRVFFLDVNPLCYEG----------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGT 129
KRV +D + L Y P +G SL V+ VFD + +
Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSRGEPVQMVYGFARSLLKALKEDGQAVVVVFDAKAPS 71
Query: 130 EHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIE-- 183
R + +YKA R F RQL +R ++D+LG +V++E
Sbjct: 72 -FRHEAYEAYKAGRAPTPEDFPRQLALVKR------------LVDLLG-----LVRLEAP 113
Query: 184 GHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYI 243
G+EADDV+ TL + ++G + + D+DF QL+SE V +++P + T K
Sbjct: 114 GYEADDVLGTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-----DGTLVTPKDVQ 168
Query: 244 AQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
+Y P + R + GD D +PG V G G KTAL+LL + GS+ENLL
Sbjct: 169 EKYGVPPERWVDFRALTGDRSDNIPG----VAGIGEKTALRLLAEWGSVENLLK 218
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 105 WLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVG 162
+ S+ +S P V VFD GG R ++ +YKA+R + L A R
Sbjct: 40 FTSMLLKLLSDFKPQYVAIVFDS-GGKNFRHKIYQNYKANRPLPPKDLIAQLPLVR---- 94
Query: 163 RSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDV 222
DV +++ G+EADD+IAT + + G ++ S DKD QL+S+++
Sbjct: 95 -------DVASNFKFAILEKNGYEADDIIATFATKTVSLGEEVIIISSDKDLLQLMSKNI 147
Query: 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
++ P+ + + T + + ++ P + ++GD D +PG VP G KTA
Sbjct: 148 KIYDPI----KCKYITEDNVVTKFGTTPDKLREVMALIGDRSDNIPG----VPSIGPKTA 199
Query: 283 LKLLKKHGSLENLLNA 298
L+ K GS+EN+ N+
Sbjct: 200 SSLITKFGSVENIFNS 215
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 27/210 (12%)
Query: 90 LCYEGSRPSLQSFGRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFL 147
L P+ +G L++ +S P + VFD +G T R ++ YK+HR
Sbjct: 28 LTNAAGEPTSAMYG-VLNMLKSLISQVQPTHIAVVFDAKGKT-FRDEMFEQYKSHRPPMP 85
Query: 148 RQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVV 207
L R ++ H D++ +P++ +EG EADDVI TL Q G + ++
Sbjct: 86 DDL-------RKQIQPLH----DMIRALGIPLLVVEGIEADDVIGTLALQASSLGKKVLI 134
Query: 208 ASPDKDFKQLISEDVQLVMPLQD--LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVD 265
++ DKD QL+ +++ L+ + + LDR K I +Y P + ++GD D
Sbjct: 135 STGDKDMAQLVDDNIMLINTMNNSLLDR------KGVIEKYGIPPELIIDYLALMGDSAD 188
Query: 266 GVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+PG V G G KTAL LL+ GS+ +
Sbjct: 189 NIPG----VAGVGEKTALGLLQGIGSMAEI 214
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 117 DPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCN 176
D V FD + G E R+ YKA+R+ L + R ++L N
Sbjct: 50 DYVAVAFD-KRGREARKSEYEEYKANRKPMPDNLQVQIPYVR-----------EILYAFN 97
Query: 177 VPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW-- 234
+P+++ EG+EADDVI +LV Q G V+ + D+D QL+ ++V + + D+
Sbjct: 98 IPIIEFEGYEADDVIGSLVNQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVE 157
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
YT+++ +Y + + +VGD D +PG++ G G K+A KLL+++ SLE
Sbjct: 158 DLYTVENVKEKYGVWANQVPDYKALVGDQSDNIPGVK----GIGEKSAQKLLEEYSSLEE 213
Query: 295 L 295
+
Sbjct: 214 I 214
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 122 VFDGEGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
VFD GG R ++ +YKA+R + QL I DV N
Sbjct: 59 VFDS-GGKNFRHKIYQNYKANRPTPPEDLIGQLP---------------LIRDVASHLNF 102
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFY 237
+++ G+EADD+IAT + + G ++ S DKD QL+S+++++ P+ + +
Sbjct: 103 AILEKNGYEADDIIATFATKTITLGKEVIIISSDKDLLQLMSKNIKIYDPI----KCKYI 158
Query: 238 TLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLN 297
T I ++ P + ++GD D +PG VP G KTA L+ + GS+EN+ N
Sbjct: 159 TEDDVIIKFGTTPDKLREVMALIGDRSDNIPG----VPSIGPKTASSLITQFGSVENIFN 214
Query: 298 A 298
+
Sbjct: 215 S 215
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1
SV=1
Length = 832
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 45/270 (16%)
Query: 77 KSKKRVFFLDVNPLCYEG-----------SRPSLQSFGRWLSLFFDQVSHADPVIAVFDG 125
+ K RV +D + L Y P +G SL D VI VFD
Sbjct: 9 EPKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDA 68
Query: 126 EGGTEHRRQLLPSYKAHR----RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVK 181
+ + R + YKA R F RQL + ++D+LG + +
Sbjct: 69 KAPS-FRHEAYGGYKAGRAPTPEDFPRQLALIKE------------LVDLLGLARL---E 112
Query: 182 IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKH 241
+ G+EADDV+A+L + ++GY + + DKD QL+S+ + ++ P L T
Sbjct: 113 VPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYL-----ITPAW 167
Query: 242 YIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL-NAAA 300
+Y P R + GD+ D +PG++ G G KTA KLL++ GSLE LL N
Sbjct: 168 LWEKYGLRPDQWADYRALTGDESDNLPGVK----GIGEKTARKLLEEWGSLEALLKNLDR 223
Query: 301 VRTVGRDYAQEALTKHADYLRRNYEVLALR 330
++ R E + H D L+ ++++ +R
Sbjct: 224 LKPAIR----EKILAHMDDLKLSWDLAKVR 249
>sp|Q8K9D0|EX53_BUCAP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=pol PE=3 SV=1
Length = 287
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 115 HADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGK 174
++ +I +FD R + YK++R +L Q + +L +
Sbjct: 55 NSKKIIIIFDS-SKKNFRNTIFKEYKSNRSAMPNKLYVQ-----------IQPLFKILEE 102
Query: 175 CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRW 234
+ + I G EADD+I +L ++ QKG + ++ S DKD QLI++++ ++ ++ +
Sbjct: 103 IGIKTLSILGIEADDIIGSLAYKLEQKGEQVLIVSHDKDMIQLITDNINVL----NISKN 158
Query: 235 SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLEN 294
S T + +Y P + L ++GD D +PG VP G KTAL LLKK +++N
Sbjct: 159 SILTPEKIQEKYGIYPKEFIDLLALMGDSSDNIPG----VPKIGIKTALFLLKKFSNIKN 214
Query: 295 LLN 297
+ N
Sbjct: 215 IYN 217
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIA--VFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P A VFD +G T R +L YK+HR
Sbjct: 27 PLTNSAGEPTGAMYGV-LNMLRSLIMQYKPTHAAVVFDAKGKT-FRDELFEHYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H + +P++ + G EADDVI TL + + G +
Sbjct: 85 PDDL-------RAQIEPLHAMV----KAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL++ ++ L+ + + + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVTPNITLINTMTN----TILGPEEVVNKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+PG VPG G KTA LL+ G L+ L
Sbjct: 190 IPG----VPGVGEKTAQALLQGLGGLDTL 214
>sp|A4SQK3|XNI_AERS4 Protein Xni OS=Aeromonas salmonicida (strain A449) GN=xni PE=3 SV=1
Length = 265
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 89/183 (48%), Gaps = 26/183 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
VIAVFDGE + R+++ P+YK R +L R G + + D +C V
Sbjct: 54 VIAVFDGEIHS-WRKEVYPAYKEGRTPMPVEL---------REGLNT--LQDAFWECGVD 101
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ + EADD+IATL + Q G RA + S DK F QLI +Q ++D +
Sbjct: 102 ALLSQTDEADDLIATLASGIAQHGARATIISTDKGFCQLICPQIQ----IRDYFNKRWLD 157
Query: 239 LKHYIAQYNCDPHSEL---SLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
QY P + +L I G ++ GVPGI G KTA +LL+++GSL L
Sbjct: 158 AAFVEQQYGVVPAQLVDFWALTGISGSNIKGVPGI-------GPKTATQLLQQYGSLSAL 210
Query: 296 LNA 298
L A
Sbjct: 211 LAA 213
>sp|A0KHE3|XNI_AERHH Protein Xni OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC
7966 / NCIB 9240) GN=xni PE=3 SV=2
Length = 267
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 26/183 (14%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
VIAVFDGE + R+++ P+YK R +L R G + + D +C V
Sbjct: 58 VIAVFDGEVHS-WRKEVYPAYKEGRTPMPTEL---------REGLNE--LQDAFWECGVD 105
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
+ + EADD+IATL + Q G RA + S DK F QLI +Q ++D +
Sbjct: 106 ALLSQTDEADDLIATLATGIAQHGARATIISTDKGFCQLICPQIQ----IRDYFNKRWLD 161
Query: 239 LKHYIAQYNCDPHSEL---SLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
QY P + +L I G ++ GVPGI G KTA +LL+++G L +L
Sbjct: 162 AAFVEQQYGVAPAQLVDFWALTGIGGSNIKGVPGI-------GPKTATQLLQQYGDLASL 214
Query: 296 LNA 298
L A
Sbjct: 215 LAA 217
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 28/233 (12%)
Query: 103 GRWLSLFFDQVSHADP--VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGR 160
G + +LFF + +P +I FD E T R+Q PSYKA R L +
Sbjct: 38 GFFKTLFF-IIKEKNPEHLIITFDSEVPT-FRKQKYPSYKATRDLPPDDLIP-------Q 88
Query: 161 VGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE 220
+G +I + L K +P+ ++EG+EADD++A+ + + Y + SPDKD Q +SE
Sbjct: 89 IG----WIKEGLLKAKIPIFEMEGYEADDLLASFAKKAAKNNYLTYIISPDKDLLQTMSE 144
Query: 221 DVQLVMPLQDLDRWSFYTL--KHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFG 278
V+++ ++ SF + ++ ++ + IVGD D +PGI+ G G
Sbjct: 145 YVKIL----KIENNSFIEMDNEYVTKKFGVNSFQIKDYLAIVGDRSDNIPGIK----GIG 196
Query: 279 RKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALRR 331
K A LL++ +L+ + + + + + + +E L K + +YE+++L
Sbjct: 197 AKGAANLLREFKTLDGIY--SNLEIINKKH-RELLIKEKENAFLSYELVSLEE 246
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
++D+LG + ++ G EADDV+ATL + ++GY + + D+D QL+SE + ++ P
Sbjct: 101 LVDLLGLVRL---EVPGFEADDVLATLAKRAEKEGYEVRILTADRDLYQLLSERIAILHP 157
Query: 228 LQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLK 287
L T +Y P + R + GD D +PG++ G G KTA +L++
Sbjct: 158 EGYL-----ITPAWLYEKYGLRPEQWVDYRALAGDPSDNIPGVK----GIGEKTAQRLIR 208
Query: 288 KHGSLENLLN 297
+ GSLENL
Sbjct: 209 EWGSLENLFQ 218
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 89 PLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIA--VFDGEGGTEHRRQLLPSYKAHRRKF 146
PL P+ +G L++ + P A VFD +G T R +L YK+HR
Sbjct: 27 PLTNSAGEPTGAMYGV-LNMLRSLIMQYQPTHAAVVFDAKGKT-FRDELFEHYKSHRPPM 84
Query: 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAV 206
L R ++ H + +P++ + G EADDVI TL + + G +
Sbjct: 85 PDDL-------RAQIEPLHAMV----KAMGLPLLAVSGVEADDVIGTLAREAEKVGRPVL 133
Query: 207 VASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDG 266
+++ DKD QL++ ++ L+ + + + + +Y P + ++GD D
Sbjct: 134 ISTGDKDMAQLVTPNITLINTMTN----TILGPDEVVNKYGVPPELIIDFLALMGDSSDN 189
Query: 267 VPGIQHVVPGFGRKTALKLLKKHGSLENL 295
+PG VPG G KTA LL+ G L+ L
Sbjct: 190 IPG----VPGVGEKTAQALLQGLGGLDTL 214
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 /
DSM 635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 81 RVFF-LDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSY 139
R FF L + L P+ FG + + ++ P A + G R L Y
Sbjct: 17 RAFFALRESGLRSSRGEPTYAVFG-FAQILLTALAEYRPDYAAVAFDVGRTFRDDLYAEY 75
Query: 140 KAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVL 199
KA R + + +F R I ++ N+P+ EG+EADDVI TL Q
Sbjct: 76 KAGRAETPEEFYP--QFER---------IKQLVQALNIPIYTAEGYEADDVIGTLARQAT 124
Query: 200 QKGYRAVVASPDKDFKQLISEDVQLVM--PLQDLDRWSFYTLKHYIAQYN-CDPHSELSL 256
++G ++ + D D QL+++ V++ + P + Y L+ +Y+ +P L
Sbjct: 125 ERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYDLEQVRKRYDGLEPDQLADL 184
Query: 257 RCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL---NAAAVR--TVGRDYAQE 311
R + GD D +PG++ G G K A+ LLK+ SL+ LL +AA R T+ R+ A+
Sbjct: 185 RGLKGDTSDNIPGVR----GIGEKGAIALLKQFRSLDALLEQIDAAPKRYQTLLREQAEA 240
Query: 312 A 312
A
Sbjct: 241 A 241
>sp|P57506|EX53_BUCAI 5'-3' exonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU431 PE=3 SV=1
Length = 286
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 110 FDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL 169
F + + +I +FD T R +L YK +R + L Q Q +
Sbjct: 50 FKKYKNLKKIIIIFDSSRKT-FRNKLFKEYKKNRSS-MPDLLVMQI----------QPLF 97
Query: 170 DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ 229
++L K + + I G EADDVI +L Q+ ++G + ++ S DKD QL++E++ +
Sbjct: 98 EILKKIGIKTLTIPGIEADDVIGSLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKN 157
Query: 230 DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKH 289
+ T + +Y P + ++GD D +PG VP G KTAL L+ K
Sbjct: 158 N----CIITSEIIQEKYGIKPKEFIDFLALMGDATDNIPG----VPKIGIKTALFLINKF 209
Query: 290 GSLENLLN 297
++EN+ N
Sbjct: 210 SNIENIYN 217
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 104/233 (44%), Gaps = 31/233 (13%)
Query: 77 KSKKRVFFLDVNPLCYEGSR-----PSLQSFGRWLSL---FFDQV----SHADP--VIAV 122
+ KK ++ LD L Y P + G +S FF + H P +AV
Sbjct: 2 QEKKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGFFRSLHTLLCHYRPRYFVAV 61
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD T R P+YKA R K +L A I ++L + V++
Sbjct: 62 FDSLTPT-FRHVQYPAYKAKRDKTSAELYAQI-----------PLIEEILCALGITVLRH 109
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
+G EADD+IATL +V + V+ S DKD QL+ + VQ V+ L +W+ +
Sbjct: 110 DGFEADDLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQ-VLRLDIDHKWTCCDAAYV 168
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
++ P L L ++GD D VPG++ G G KTA LL G+L+ +
Sbjct: 169 QQRWTVMPTQLLDLFSLMGDSSDNVPGVR----GIGPKTAAHLLHCFGTLDGI 217
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 17/198 (8%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F LS ++V + ++A FD G T R ++ YK R K +
Sbjct: 39 AIYGFQLMLSHLLERVEPSHILVA-FDA-GKTTFRTEMYADYKGGRAK-----------T 85
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
FI ++L + ++ +EADD+I TL Q G+ + S DKD QL
Sbjct: 86 PDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQL 145
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
E + + + + + +T + + + P + L+ ++GD D +PG+ V
Sbjct: 146 TDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQFIDLKALMGDKSDNIPGVTKV---- 201
Query: 278 GRKTALKLLKKHGSLENL 295
G KT +KLL +HGSLE +
Sbjct: 202 GEKTGIKLLLEHGSLEGI 219
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 98 SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFS 157
++ F LS ++V + ++A FD G T R ++ YK R K +
Sbjct: 39 AIYGFQLMLSHLLERVEPSHILVA-FDA-GKTTFRTEMYADYKGGRAK-----------T 85
Query: 158 RGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQL 217
FI ++L + + +EADD+I TL Q G+ + S DKD QL
Sbjct: 86 PDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQL 145
Query: 218 ISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGF 277
E + + + + + +T + + + P + L+ ++GD D +PG+ V
Sbjct: 146 TDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQFIDLKALMGDKSDNIPGVTKV---- 201
Query: 278 GRKTALKLLKKHGSLENL 295
G KT +KLL +HGSLE +
Sbjct: 202 GEKTGIKLLLEHGSLEGI 219
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 101 SFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRK----FLRQLTASQRF 156
+F LS +++ +IA FD G T R ++ YK R K F QL
Sbjct: 43 AFHTMLSSLMERIQPTHVLIA-FDA-GKTTFRTEMFADYKGGRSKTPDEFREQLP----- 95
Query: 157 SRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATL--VGQVLQKGYRAVVASPDKDF 214
FI +++ K + ++ +EADD+I TL + + + + + DKD
Sbjct: 96 ----------FIKEMIEKLGIRHYELANYEADDIIGTLDKMAEAPDVNFDVTIVTGDKDM 145
Query: 215 KQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVV 274
QL+ + ++ + + + + +T + + + P + L+ ++GD D PG+ V
Sbjct: 146 IQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLTPSQFIDLKALMGDSSDNYPGVTKV- 204
Query: 275 PGFGRKTALKLLKKHGSLENL 295
G KT LKLL++ GSLENL
Sbjct: 205 ---GEKTGLKLLQEFGSLENL 222
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=polA PE=3 SV=1
Length = 877
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 101 SFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRK----FLRQLTASQRF 156
+F LS +++ +IA FD G T R ++ YK R K F QL
Sbjct: 43 AFHTMLSSLMERIEPTHVLIA-FDA-GKTTFRTEMFADYKGGRSKTPDEFREQLP----- 95
Query: 157 SRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATL--VGQVLQKGYRAVVASPDKDF 214
FI +++ K + ++ +EADD+I TL + + + + + DKD
Sbjct: 96 ----------FIKEMIEKLGIRHYELANYEADDIIGTLDKMAEAPNVNFDVTIVTGDKDM 145
Query: 215 KQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVV 274
QL+ + ++ + + + + +T + + + P + L+ ++GD D PG+ V
Sbjct: 146 IQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLTPAQFIDLKALMGDSSDNYPGVTKV- 204
Query: 275 PGFGRKTALKLLKKHGSLENL 295
G KT LKLL++ GSLENL
Sbjct: 205 ---GEKTGLKLLQEFGSLENL 222
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 21/208 (10%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
VI VFD T R + YK+ R + L G++ R + D LG P
Sbjct: 97 VIVVFDPPVKT-FRHEQYEGYKSGRAQTPEDLP-------GQINRIRALV-DALG---FP 144
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYT 238
++ G+EADDVIA+L KGY + + D+D QL+ E V+++ + +S
Sbjct: 145 RLEEPGYEADDVIASLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIA-----NDFSLIG 199
Query: 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+Y + R + GD D +PG + G G KTA KLL+++G+LE + A
Sbjct: 200 PAQVEEKYGVTVRQWVDYRALTGDASDNIPGAK----GIGPKTAAKLLQEYGTLEKVYEA 255
Query: 299 AAVRTVGRDYAQEALTKHADYLRRNYEV 326
A T+ D ++ L + ++ ++++
Sbjct: 256 AHAGTLKPDGTRKKLLDSEENVKFSHDL 283
>sp|Q98PK2|EX53_MYCPU 5'-3' exonuclease OS=Mycoplasma pulmonis (strain UAB CTIP) GN=polA
PE=3 SV=1
Length = 297
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 73 LEKTKSKKRVFFL-DVNPLCYEGSRPSLQ---SFGRWLSLFFDQV----SHADP--VIAV 122
+ K+ SK F L D N L + S + +F + LFF + + +P +
Sbjct: 1 MTKSGSKSEKFLLIDGNYLVHRSYYVSFKFKNNFRSTIYLFFQTIIKIIKNLNPENIFIA 60
Query: 123 FDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI 182
FD EGGT R L YK+ R K + I ++L N+
Sbjct: 61 FDEEGGT-WRHDLCKEYKSQRSKM-----------EDEFWNIFKAIREILDSINLNSGGF 108
Query: 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHY 242
GHEADDVIAT+ + + + + S DKD QLI ++V + D + + +++++
Sbjct: 109 RGHEADDVIATITSKFKDEN-QIYIFSRDKDLLQLIDKNVYIT---HDNELKNLISIENF 164
Query: 243 IAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298
+ +P + + I GD D + GI G G K A LL SLE + ++
Sbjct: 165 YQNFQLEPDQIVDFKAIAGDSSDNLKGI----AGIGEKGAKNLLNNFKSLEKIFDS 216
>sp|C5BHA5|XNI_EDWI9 Protein Xni OS=Edwardsiella ictaluri (strain 93-146) GN=xni PE=3
SV=1
Length = 253
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 113 VSHADP--VIAVFDGEGGTEH-RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFIL 169
V H P +AVFD + E R +LLP YKA R+ L +Q R + Q
Sbjct: 37 VGHTTPSHAVAVFDQDDRAESWRHRLLPGYKAGRQAMPDAL--AQEMESLRAAFTAQ--- 91
Query: 170 DVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQ 229
V G+EADD+ ATL +V Q G+R + S DK + QL+S +Q+ Q
Sbjct: 92 ------GVACWHSPGNEADDLAATLAYKVAQGGHRVTIVSTDKGYCQLLSPQIQIRDYFQ 145
Query: 230 DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKH 289
RW L ++ P + G +PGI G G KTA LLK+
Sbjct: 146 --KRW--LDLPFVQREFGVAPQQLTDFWGLAGIGSSKIPGIS----GIGAKTAAALLKEF 197
Query: 290 GSLENL 295
GSLE L
Sbjct: 198 GSLEAL 203
>sp|A7MR03|XNI_CROS8 Protein Xni OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=xni
PE=3 SV=1
Length = 251
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 112 QVSHADPVIAVFDGEGGTE-HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
Q +HA +AVFD E + R QLLP YKA R L R D
Sbjct: 41 QPTHA---VAVFDDEARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALR-----------D 86
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
+ VP +EG+EADD+ ATL +V G+ A + S DK + QL+ ++++ Q
Sbjct: 87 AFTRRGVPCWHVEGNEADDLAATLAVKVAAAGHEATIVSTDKGYCQLLRPEIRIRDYFQ- 145
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
RW +++ P + G +PG VPG G K+A +L+ G
Sbjct: 146 -KRW--LDAPFIESEFGVSPGQLADFWGLAGISSSKIPG----VPGIGPKSATQLINDFG 198
Query: 291 SLENL 295
+LE L
Sbjct: 199 TLEAL 203
>sp|Q7N8Q9|XNI_PHOLL Protein Xni OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=xni PE=3 SV=1
Length = 252
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 112 QVSHADPVIAVFDGEG-GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
Q SH +AVFD E R Q+LP YKA R L Q + R Q
Sbjct: 37 QHSHPTHAVAVFDEENRNHSWRHQILPDYKAGRSPMPDNL--QQEMPQIRASFEQQ---- 90
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
V +GHEADD+ ATL +V G+ + S DK + QL+S ++++ Q
Sbjct: 91 -----GVTCWHAKGHEADDLAATLAVKVTAAGHNVTIVSTDKGYCQLLSPNIRIRDYFQ- 144
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
RW + ++ P + G +PGIQ G G KTA LL++ G
Sbjct: 145 -KRW--LDMPFVQQEFGVLPEQLPDYWGLAGISSSKIPGIQ----GIGPKTAATLLQQAG 197
Query: 291 SLENLL 296
+L+NL
Sbjct: 198 TLDNLF 203
>sp|Q9KAV6|EX53_BACHD 5'-3' exonuclease OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=BH2180 PE=3
SV=1
Length = 303
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
V +D + HRRQ YKA R + L ++ +L + V
Sbjct: 62 VAVAWDVKREDSHRRQAFAFYKASRGELPEALI-----------EQYETATSLLEEIGVA 110
Query: 179 VVKIEGHEADDVIATLVGQVL--QKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSF 236
V I +EADD I + +KG+ + S D+D QL+S+ ++ + D
Sbjct: 111 QVTIPPYEADDTIGAFACRWAKEEKGH-CFIYSNDRDLLQLLSKSTSQIISSKGKDL--I 167
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENL 295
YT +++ YN P + ++ ++GD D +PG PG G K+AL L++++G++E L
Sbjct: 168 YTEENFRNDYNISPAQWVDVKALLGDKSDNIPG----CPGVGEKSALPLIQQYGTIETL 222
>sp|Q9RJ79|EX53_STRCO 5'-3' exonuclease OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=SCO1622 PE=3 SV=1
Length = 301
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++A D + R +L+PSYKAHR R + I VL +
Sbjct: 50 LVACMDADWRPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIA 109
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE--DVQLVMPLQDLDRWSF 236
V + G+EADDVI T + + + D+D QL+ + V+++ P++ + +
Sbjct: 110 RVGVAGYEADDVIGTYTARATGP---VDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLNL 166
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+Y D L + GD DG+PG VPG G KTA KLL + G L +
Sbjct: 167 VDEAALREKYGVDGAGYADLALLRGDPSDGLPG----VPGIGEKTAAKLLAEFGDLAGIQ 222
Query: 297 NA 298
A
Sbjct: 223 AA 224
>sp|Q10699|EX53_MYCTU 5'-3' exonuclease OS=Mycobacterium tuberculosis GN=Rv2090 PE=3 SV=2
Length = 318
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 40/191 (20%)
Query: 130 EHRRQLLPSYKAHR------------RKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNV 177
+ R L+PSYKAHR + +LT I+++L +
Sbjct: 66 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQV-----------DMIMELLDAFGI 114
Query: 178 PVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISED---VQLVMPLQDLDRW 234
+ G EADDV+ TL + ++ +V S D+D Q++++D V+++ + L +
Sbjct: 115 AMAGAPGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKA 172
Query: 235 SFYTLKHYIAQYNCDPH------SELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
+ + +Y H +EL+L + GD DG+PG VPG G KTA LL +
Sbjct: 173 TLFGPAEVAERYGLPAHRAGAAYAELAL--LRGDPSDGLPG----VPGVGEKTAATLLAR 226
Query: 289 HGSLENLLNAA 299
HGSL+ ++ AA
Sbjct: 227 HGSLDQIMAAA 237
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=polA PE=3 SV=2
Length = 891
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 169 LDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228
L+ L K V++ G EADDVIA+L Y+ + S DKDF QL+S+ + L
Sbjct: 102 LEWLQKMGFVCVEVNGFEADDVIASLAT---LSPYKTRIYSKDKDFNQLLSDKIAL---- 154
Query: 229 QDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
D + + K + +Y P + IVGD D G++ G G K A +LL++
Sbjct: 155 --FDGKTEFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGVK----GIGSKNAKELLQR 208
Query: 289 HGSLE----------NLLNAAAVRTVGRDYAQEALTKHADYLRR 322
GSLE NLL+ R + D A L+K L R
Sbjct: 209 LGSLEKIYENLDLAKNLLSPKMYRALIHDKASAFLSKELATLER 252
>sp|Q6LN06|XNI_PHOPR Protein Xni OS=Photobacterium profundum GN=xni PE=3 SV=2
Length = 258
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 31/224 (13%)
Query: 110 FDQVSHADPVIAVFDGEGGTE-HRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFI 168
F + SH ++AVFD G R +LLP YK R+ +L A + I
Sbjct: 44 FSEPSH---IVAVFDHHGDDRGWRAKLLPHYKEGRKPMPPELQAGM-----------EII 89
Query: 169 LDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228
D + + +G EADD++ATL +V + + + S DK + QL+S +++
Sbjct: 90 QDAFMDLGIDSLLSDGDEADDLVATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYF 149
Query: 229 QDLDRW--SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLL 286
Q RW S + K +Y P + G +PGI PG G K AL+LL
Sbjct: 150 Q--QRWLDSPFVEK----EYGVKPEQLPDYWGLAGISSSKIPGI----PGIGPKAALELL 199
Query: 287 KKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+ L+ +L A + T Q+ +TKH + + +V +L+
Sbjct: 200 SLYPDLDTILQAEDLPT----KWQKKITKHRESAEASKKVASLK 239
>sp|Q89AD1|EX53_BUCBP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=pol PE=3 SV=1
Length = 302
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 119 VIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVP 178
++ +FD T R +L YK +R K L + ++P
Sbjct: 59 IVVIFDSPQKT-FRNELFIPYKKNRPKMPNDLKEQILPIHHIIKHIGI------PIISIP 111
Query: 179 VVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD--LDRWSF 236
V EADD+I TL ++ +K Y ++++ DKD QL++ + +++ + LD
Sbjct: 112 HV-----EADDIIGTLATKLYKKKYFILISTNDKDLAQLVNIHIHVLIGTSNIVLDE--- 163
Query: 237 YTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
+Y P L ++GD+ D +PG VP G+KTAL LLK GSLEN+
Sbjct: 164 ---SKVKKKYGIIPKLIPDLLGLMGDNSDNIPG----VPTVGKKTALILLKTFGSLENIY 216
Query: 297 N 297
N
Sbjct: 217 N 217
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 169 LDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228
L+ L K V++ G EADDVIA+L Y+ + S DKDF QL+S+ + L
Sbjct: 102 LEWLQKMGFTCVEVGGFEADDVIASLAT---LSPYKTRIYSKDKDFNQLLSDKIAL---- 154
Query: 229 QDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288
D + + K + +Y P + IVGD D G++ G G K A +LL++
Sbjct: 155 --FDGKTEFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGVK----GIGSKNAKELLQR 208
Query: 289 HGSLE----------NLLNAAAVRTVGRDYAQEALTKHADYLRR 322
GSLE NLL+ + + +D L+K L R
Sbjct: 209 LGSLEKIYENLDLAKNLLSPKMYQALIQDKGSAFLSKELATLER 252
>sp|Q6D8F6|XNI_ERWCT Protein Xni OS=Erwinia carotovora subsp. atroseptica (strain SCRI
1043 / ATCC BAA-672) GN=xni PE=3 SV=1
Length = 260
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 112 QVSHADPVIAVFDGEG-GTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILD 170
Q +HA +AVFD E T R QLLP YKA R L Q + I
Sbjct: 41 QPTHA---VAVFDDEDRDTSWRHQLLPDYKAGRTPMPDNL--KQELPQ---------IKT 86
Query: 171 VLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQD 230
V G+EADD+ ATL ++ G++A + S DK + QL++ +Q+ Q
Sbjct: 87 AFAAVGVESWHSPGNEADDLAATLATKLSSAGHQATIISTDKGYCQLLAPHIQIRDYFQ- 145
Query: 231 LDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHG 290
RW L +++ P + G +PG V G G K+A +LL++ G
Sbjct: 146 -KRW--LDLPFIEQEFSVSPQQLTDYWGLAGISSSKIPG----VAGIGPKSAAQLLQQAG 198
Query: 291 SLENL 295
+LE L
Sbjct: 199 NLEAL 203
>sp|Q12L39|XNI_SHEDO Protein Xni OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=xni PE=3 SV=1
Length = 252
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 27/215 (12%)
Query: 112 QVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDV 171
Q SH VI V+DG+ + R++L YK R+ L + VG I +
Sbjct: 45 QPSH---VIVVWDGDEES-WRKKLYSDYKKGRKPMPEALKIA------LVG-----IRNT 89
Query: 172 LGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDL 231
L + + ++ E EADDVIATL ++++ A++ S DK F QL+ +++Q+ + L
Sbjct: 90 LSEAGIHSLEAES-EADDVIATLATKMVENSGAAIIVSTDKGFSQLVKKNIQIWDHFKQL 148
Query: 232 DRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291
F + + + + + L + GD + +PGI G G K+A LL K +
Sbjct: 149 ----FLDISAHEKKLAVEQYQFLDFIALAGDSGNKIPGI----AGIGPKSAADLLNKFRT 200
Query: 292 LENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEV 326
L N+ N ++ +G AQ+ L + + R +Y++
Sbjct: 201 LANIYN--SLDNLGAKQAQK-LAEGREMARISYKL 232
>sp|B1KQX1|XNI_SHEWM Protein Xni OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=xni
PE=3 SV=1
Length = 252
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 37/228 (16%)
Query: 108 LFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQF 167
L + Q SH V V+DG+ T R+ L YK R+ L S ++H
Sbjct: 41 LKYHQPSH---VAIVWDGDA-TSWRKTLYEDYKKGRKPMPEALAKSLP-----ALKTH-- 89
Query: 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMP 227
L + NV + E EADDVIATL +++ +A++ S DK F QL +++
Sbjct: 90 ----LSELNVNSIDAEA-EADDVIATLATKLVNNQGKAIIVSTDKGFTQLTHTNIE---- 140
Query: 228 LQDLDRW-----SFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTA 282
RW ++ T++ + + + + GD + +PG VPG G K+A
Sbjct: 141 -----RWDHFNQAYITIEQREEKLGVERTQFIDYLALAGDSGNKIPG----VPGIGPKSA 191
Query: 283 LKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHADYLRRNYEVLALR 330
+LLK SL NL ++ VG A++ L + R +Y+++ L+
Sbjct: 192 SELLKIFRSLSNLY--GSLEQVGAKQAKK-LEEGKQMARLSYKLVQLQ 236
>sp|P54161|EX53_BACSU 5'-3' exonuclease OS=Bacillus subtilis (strain 168) GN=ypcP PE=1
SV=1
Length = 296
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 127 GGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHE 186
G +R L YKA+R +L ++ LG N+ G+E
Sbjct: 66 GSKTYRNDLFQDYKANRSAPPVELIPQFDLAKEAAAE--------LGIMNIGFA---GYE 114
Query: 187 ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQY 246
ADD I TL + V + D+D QL+++ V + + + + + YT + + +
Sbjct: 115 ADDCIGTL-ADLFANEADITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEET 173
Query: 247 NCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLL 296
P + + ++ ++GD D PG++ G G KTA KL++++ +++ LL
Sbjct: 174 GVMPKALIDIKALMGDSSDNYPGVK----GIGEKTAYKLIREYETIDRLL 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,801,097
Number of Sequences: 539616
Number of extensions: 5244302
Number of successful extensions: 13853
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 13529
Number of HSP's gapped (non-prelim): 189
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)