Query 020010
Match_columns 332
No_of_seqs 192 out of 1422
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exn_A 5'-exonuclease, 5'-nucl 100.0 2.6E-60 8.9E-65 452.4 19.4 235 79-331 18-263 (290)
2 3h7i_A Ribonuclease H, RNAse H 100.0 6.8E-49 2.3E-53 373.7 11.6 184 79-280 12-211 (305)
3 1bgx_T TAQ DNA polymerase; DNA 100.0 3E-51 1E-55 436.6 -7.5 230 78-331 10-250 (832)
4 1a76_A Flap endonuclease-1 pro 100.0 2.7E-42 9.2E-47 332.6 15.0 223 79-328 20-272 (326)
5 2izo_A FEN1, flap structure-sp 100.0 2.7E-42 9.3E-47 335.3 11.9 210 79-301 17-266 (346)
6 3q8k_A Flap endonuclease 1; he 100.0 1.2E-41 4E-46 330.7 14.4 209 78-301 25-264 (341)
7 1rxw_A Flap structure-specific 100.0 2.5E-41 8.6E-46 327.0 16.3 210 79-301 20-267 (336)
8 3ory_A Flap endonuclease 1; hy 100.0 2.7E-41 9.2E-46 330.7 10.6 212 77-301 32-283 (363)
9 1b43_A Protein (FEN-1); nuclea 100.0 3.6E-40 1.2E-44 319.4 13.9 208 79-301 20-269 (340)
10 1ul1_X Flap endonuclease-1; pr 100.0 7.8E-39 2.7E-43 314.6 12.8 209 79-301 26-264 (379)
11 3qe9_Y Exonuclease 1; exonucle 100.0 5.8E-34 2E-38 277.7 15.7 205 79-301 23-259 (352)
12 2a1j_A DNA repair endonuclease 96.5 0.0014 4.7E-08 48.2 2.7 25 275-299 10-34 (63)
13 1z00_B DNA repair endonuclease 95.9 0.0047 1.6E-07 48.1 3.3 25 275-299 24-48 (84)
14 1kft_A UVRC, excinuclease ABC 95.7 0.003 1E-07 47.7 1.4 29 267-299 26-54 (78)
15 1x2i_A HEF helicase/nuclease; 95.7 0.0064 2.2E-07 44.8 3.0 25 275-299 20-44 (75)
16 1z00_A DNA excision repair pro 95.5 0.0075 2.6E-07 46.6 3.0 25 275-299 25-49 (89)
17 2a1j_B DNA excision repair pro 95.2 0.0081 2.8E-07 46.7 2.2 24 275-298 38-61 (91)
18 2bgw_A XPF endonuclease; hydro 94.9 0.032 1.1E-06 49.8 5.7 111 169-298 73-191 (219)
19 2nrt_A Uvrabc system protein C 94.3 0.019 6.5E-07 52.3 2.5 25 275-299 174-198 (220)
20 3c65_A Uvrabc system protein C 92.0 0.028 9.6E-07 51.3 0.0 30 267-300 175-204 (226)
21 1cuk_A RUVA protein; DNA repai 91.6 0.15 5.2E-06 45.6 4.3 23 275-297 79-104 (203)
22 2y35_A LD22664P; hydrolase-DNA 91.3 5.2 0.00018 44.2 16.7 96 176-278 162-297 (1140)
23 3v32_B Ribonuclease ZC3H12A; r 90.7 0.45 1.6E-05 42.0 6.4 105 75-212 19-134 (185)
24 4gfj_A Topoisomerase V; helix- 88.7 0.21 7.3E-06 49.6 2.9 25 275-299 474-498 (685)
25 1ixr_A Holliday junction DNA h 88.6 0.19 6.4E-06 44.6 2.2 23 275-297 78-103 (191)
26 3fqd_A Protein DHP1, 5'-3' exo 88.2 20 0.0007 38.5 17.7 92 176-270 195-344 (899)
27 1s5l_U Photosystem II 12 kDa e 87.0 0.2 6.9E-06 42.2 1.4 41 275-319 69-111 (134)
28 3pie_A 5'->3' exoribonuclease 86.2 4.6 0.00016 44.6 11.7 91 181-278 172-300 (1155)
29 3v33_A Ribonuclease ZC3H12A; r 85.0 1.4 4.9E-05 40.0 6.0 103 77-212 21-134 (223)
30 2w9m_A Polymerase X; SAXS, DNA 83.6 1.5 5.1E-05 44.7 6.3 26 275-300 103-129 (578)
31 2ztd_A Holliday junction ATP-d 83.0 0.56 1.9E-05 42.2 2.5 17 275-291 94-110 (212)
32 3c1y_A DNA integrity scanning 81.4 1.3 4.4E-05 43.2 4.5 27 274-300 320-346 (377)
33 3b0x_A DNA polymerase beta fam 80.8 2.6 9E-05 42.8 6.8 26 275-300 99-126 (575)
34 1vq8_Y 50S ribosomal protein L 77.8 0.45 1.5E-05 43.7 0.0 24 275-298 21-45 (241)
35 3sgi_A DNA ligase; HET: DNA AM 76.7 0.51 1.7E-05 48.9 0.0 26 275-300 535-560 (615)
36 2owo_A DNA ligase; protein-DNA 76.5 1.1 3.8E-05 46.9 2.5 25 275-299 518-542 (671)
37 2bcq_A DNA polymerase lambda; 74.5 1.9 6.5E-05 41.1 3.4 26 275-300 102-128 (335)
38 1dgs_A DNA ligase; AMP complex 72.8 1.3 4.4E-05 46.3 1.8 24 275-298 513-536 (667)
39 2fmp_A DNA polymerase beta; nu 72.7 3.3 0.00011 39.4 4.6 24 275-298 104-128 (335)
40 2qip_A Protein of unknown func 72.4 3.3 0.00011 35.0 4.1 49 171-219 69-126 (165)
41 3ugs_B Undecaprenyl pyrophosph 71.3 13 0.00044 33.6 7.9 67 114-197 5-81 (225)
42 1jms_A Terminal deoxynucleotid 67.3 3.4 0.00012 40.1 3.4 23 275-297 127-150 (381)
43 3maj_A DNA processing chain A; 67.0 3.6 0.00012 40.1 3.5 26 275-300 32-57 (382)
44 2ihm_A POL MU, DNA polymerase 65.8 3.4 0.00012 39.8 3.1 22 275-296 108-130 (360)
45 4glx_A DNA ligase; inhibitor, 65.3 5.8 0.0002 40.8 4.8 24 275-298 518-541 (586)
46 2duy_A Competence protein come 61.5 4.2 0.00014 29.8 2.2 22 275-296 33-56 (75)
47 4h8e_A Undecaprenyl pyrophosph 61.4 17 0.00059 33.5 6.8 82 116-215 25-123 (256)
48 2i5h_A Hypothetical protein AF 59.5 15 0.0005 32.9 5.7 48 249-300 113-168 (205)
49 3eef_A N-carbamoylsarcosine am 59.4 7.1 0.00024 33.2 3.6 43 167-209 100-142 (182)
50 3arc_U Photosystem II 12 kDa e 57.8 2.5 8.6E-05 33.4 0.4 23 275-297 32-56 (97)
51 2edu_A Kinesin-like protein KI 57.5 4.8 0.00016 31.2 2.0 15 275-289 46-60 (98)
52 3hu5_A Isochorismatase family 57.3 7.9 0.00027 33.7 3.6 43 167-209 116-158 (204)
53 1im5_A 180AA long hypothetical 57.2 8.2 0.00028 32.7 3.6 43 167-209 110-152 (180)
54 2ziu_A MUS81 protein; helix-ha 56.0 8.3 0.00028 35.8 3.8 27 275-301 243-269 (311)
55 3hb7_A Isochorismatase hydrola 55.9 8.5 0.00029 33.5 3.6 43 167-209 110-152 (204)
56 1j2r_A Hypothetical isochorism 55.6 8.8 0.0003 32.9 3.6 43 167-209 122-164 (199)
57 1nf9_A Phenazine biosynthesis 54.6 9.3 0.00032 33.1 3.6 43 167-209 132-174 (207)
58 3irv_A Cysteine hydrolase; str 54.4 9.2 0.00031 34.1 3.6 43 167-209 129-171 (233)
59 3txy_A Isochorismatase family 52.9 10 0.00035 32.8 3.6 43 167-209 116-158 (199)
60 3oqp_A Putative isochorismatas 51.9 12 0.0004 33.0 3.8 43 167-209 99-141 (211)
61 3gbc_A Pyrazinamidase/nicotina 51.2 11 0.00039 32.2 3.6 43 167-209 115-157 (186)
62 2a67_A Isochorismatase family 51.2 9.1 0.00031 32.1 2.9 43 167-209 91-133 (167)
63 3tg2_A Vibriobactin-specific i 50.0 9.3 0.00032 34.0 2.9 43 167-209 128-170 (223)
64 3vdp_A Recombination protein R 50.0 6.4 0.00022 35.4 1.8 12 275-286 32-43 (212)
65 3lqy_A Putative isochorismatas 49.9 9.7 0.00033 32.6 2.9 43 167-209 103-145 (190)
66 3mcw_A Putative hydrolase; iso 49.8 9.7 0.00033 33.0 2.9 43 167-209 103-145 (198)
67 4h17_A Hydrolase, isochorismat 49.5 9.8 0.00033 33.0 2.9 43 167-209 113-155 (197)
68 3o94_A Nicotinamidase; hydrola 49.0 13 0.00044 32.9 3.6 43 167-209 133-175 (211)
69 2d2r_A Undecaprenyl pyrophosph 48.9 41 0.0014 30.7 7.1 82 116-215 16-114 (245)
70 2ztd_A Holliday junction ATP-d 48.5 8 0.00027 34.6 2.2 27 258-289 117-143 (212)
71 2wt9_A Nicotinamidase; hydrola 48.1 13 0.00045 33.0 3.6 43 167-209 157-199 (235)
72 3qas_B Undecaprenyl pyrophosph 46.1 36 0.0012 31.2 6.2 80 117-215 19-116 (253)
73 2vg3_A Undecaprenyl pyrophosph 46.0 41 0.0014 31.4 6.7 81 116-215 56-154 (284)
74 2fq1_A Isochorismatase; ENTB, 45.8 15 0.0005 33.6 3.6 43 167-209 135-177 (287)
75 1yzv_A Hypothetical protein; s 45.4 12 0.00039 32.9 2.7 43 167-209 100-142 (204)
76 1yac_A Ycacgp, YCAC gene produ 45.3 9.8 0.00034 33.3 2.2 44 166-209 94-137 (208)
77 3kl2_A Putative isochorismatas 45.1 12 0.00042 33.1 2.9 43 167-209 141-183 (226)
78 1vdd_A Recombination protein R 44.9 8.5 0.00029 35.0 1.8 12 275-286 18-29 (228)
79 3ot4_A Putative isochorismatas 44.7 14 0.00047 33.2 3.2 43 167-209 149-191 (236)
80 1nba_A N-carbamoylsarcosine am 43.0 15 0.00051 33.5 3.2 43 167-209 154-196 (264)
81 3r2j_A Alpha/beta-hydrolase-li 42.5 15 0.00051 32.7 3.0 43 167-209 147-189 (227)
82 3v8e_A Nicotinamidase; hydrola 42.1 19 0.00065 31.7 3.6 43 167-209 144-186 (216)
83 3zvk_A VAPC2, toxin of toxin-a 41.7 21 0.00071 28.0 3.5 34 186-226 97-131 (134)
84 2h1c_A Trafficking protein B; 40.5 7 0.00024 30.6 0.5 35 186-228 102-137 (139)
85 1v96_A Hypothetical protein PH 40.1 8 0.00027 31.1 0.8 29 186-219 96-125 (149)
86 1ixr_A Holliday junction DNA h 40.0 9 0.00031 33.6 1.1 22 264-289 106-127 (191)
87 1w8i_A Putative VAPC ribonucle 39.8 7.3 0.00025 32.0 0.5 26 186-216 101-126 (156)
88 2vg0_A Short-chain Z-isoprenyl 38.7 60 0.0021 29.1 6.4 66 116-199 3-80 (227)
89 3sgv_B Undecaprenyl pyrophosph 37.1 26 0.00088 32.2 3.8 82 116-215 18-116 (253)
90 1cuk_A RUVA protein; DNA repai 37.1 14 0.00049 32.6 2.0 22 264-289 107-128 (203)
91 3kbb_A Phosphorylated carbohyd 35.5 2.3 8E-05 35.6 -3.4 28 239-270 146-173 (216)
92 1x9g_A Putative MAR1; structur 35.1 24 0.00081 30.7 3.1 41 167-209 99-139 (200)
93 3n0u_A Probable N-glycosylase/ 34.0 18 0.00063 32.2 2.2 17 275-291 136-152 (219)
94 3fhg_A Mjogg, N-glycosylase/DN 31.2 23 0.00078 31.0 2.3 16 275-290 123-138 (207)
95 2csb_A Topoisomerase V, TOP61; 31.2 26 0.00089 33.0 2.7 26 273-298 415-440 (519)
96 3fhf_A Mjogg, N-glycosylase/DN 30.9 23 0.00079 31.5 2.3 17 275-291 131-147 (214)
97 2dla_A 397AA long hypothetical 30.5 22 0.00076 31.5 2.0 24 277-301 8-31 (222)
98 3b0x_A DNA polymerase beta fam 29.2 28 0.00097 35.1 2.9 35 246-289 113-148 (575)
99 1o4w_A PIN (PILT N-terminus) d 29.1 21 0.00072 29.1 1.6 40 183-229 97-137 (147)
100 1f75_A Undecaprenyl pyrophosph 28.9 43 0.0015 30.5 3.8 81 116-215 21-119 (249)
101 1pu6_A 3-methyladenine DNA gly 27.1 25 0.00086 31.0 1.9 14 275-288 127-140 (218)
102 1kea_A Possible G-T mismatches 25.0 29 0.00099 30.6 1.9 14 275-288 121-134 (221)
103 2h56_A DNA-3-methyladenine gly 24.2 31 0.001 30.8 1.9 18 275-292 144-162 (233)
104 1kg2_A A/G-specific adenine gl 24.1 31 0.0011 30.5 1.9 16 275-290 115-131 (225)
105 2abk_A Endonuclease III; DNA-r 23.6 32 0.0011 30.0 1.9 14 275-288 115-128 (211)
106 3tnd_A TRNA(FMet)-specific end 23.3 34 0.0012 26.6 1.8 29 186-219 96-125 (132)
107 1ci4_A Protein (barrier-TO-aut 22.4 47 0.0016 25.8 2.3 14 275-288 24-37 (89)
108 2zix_A Crossover junction endo 21.9 10 0.00036 35.2 -1.8 27 275-301 239-265 (307)
109 1b0a_A Protein (fold bifunctio 21.8 37 0.0013 31.7 2.0 26 258-288 239-274 (288)
110 3l07_A Bifunctional protein fo 21.7 38 0.0013 31.6 2.0 78 199-288 182-275 (285)
111 4e9f_A Methyl-CPG-binding doma 21.5 45 0.0015 28.2 2.3 21 262-286 101-121 (161)
112 1orn_A Endonuclease III; DNA r 21.3 38 0.0013 30.0 1.9 16 275-290 119-135 (226)
113 1vq8_Y 50S ribosomal protein L 21.1 20 0.00069 32.5 0.0 32 256-291 39-70 (241)
114 1qys_A TOP7; alpha-beta, novel 20.9 1.5E+02 0.0051 22.6 4.8 57 160-216 28-89 (106)
115 2yg9_A DNA-3-methyladenine gly 20.6 40 0.0014 29.9 1.9 17 275-291 152-169 (225)
116 1a4i_A Methylenetetrahydrofola 20.6 40 0.0014 31.7 1.9 26 258-288 251-286 (301)
117 2b34_A F35G2.2, MAR1 ribonucle 20.6 63 0.0021 27.8 3.1 40 168-209 94-133 (199)
118 4b21_A Probable DNA-3-methylad 20.3 41 0.0014 30.1 1.9 17 275-291 156-173 (232)
119 3s6i_A DNA-3-methyladenine gly 20.1 42 0.0014 29.9 1.9 18 275-292 145-163 (228)
No 1
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=2.6e-60 Score=452.37 Aligned_cols=235 Identities=22% Similarity=0.334 Sum_probs=207.1
Q ss_pred CCcEEEEeCcchhhhhc-----CchhhHHHHHHHHHHHHhcC--CCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhh
Q 020010 79 KKRVFFLDVNPLCYEGS-----RPSLQSFGRWLSLFFDQVSH--ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLT 151 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~-----~p~~~~~~~~l~~ll~~i~~--~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~ 151 (332)
++++++|||++++||++ .| ++.+|++++.+.+.. ++++++|||++ +++||+++||+||+||+++|+...
T Consensus 18 ~~~lllIDg~~llyRa~~~~~G~p---av~Gf~~~l~~ll~~~~p~~~vvvFD~~-~~tfR~~~~~~YKa~R~~~p~~~~ 93 (290)
T 1exn_A 18 RRNLMIVDGTNLGFRFKHNNSKKP---FASSYVSTIQSLAKSYSARTTIVLGDKG-KSVFRLEHLPEYKGNRDEKYAQRT 93 (290)
T ss_dssp -CEEEEEEHHHHHHHHHHHCSSSC---CHHHHHHHHHHHHHHTTEEEEEEECCBS-CCHHHHHHCTTTTHHHHHHHHTSC
T ss_pred CCCEEEEECcHHHHHHHhCCCCch---HHHHHHHHHHHHHHHcCCCeEEEEEcCC-CchhhhhCcHHHHcCCCCCCcccc
Confidence 56899999999999984 45 455666666655543 45589999985 789999999999999999863211
Q ss_pred hhhhcchhhHHHh-HHHHHHHHhc--CCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCcCccCCCCeEEEecC
Q 020010 152 ASQRFSRGRVGRS-HQFILDVLGK--CNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPL 228 (332)
Q Consensus 152 ~~~~~~~~~L~~q-l~~i~elL~~--~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~DKDl~QLv~~~v~v~~~~ 228 (332)
+..++|..| ++.++++|++ +|||++.++||||||+||+||+++.+.|..|+|+|+|||++||++++|+++++.
T Consensus 94 ----~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~ 169 (290)
T 1exn_A 94 ----EEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFT 169 (290)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEETT
T ss_pred ----ccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEECC
Confidence 112679999 9999999999 999999999999999999999999988999999999999999999999999875
Q ss_pred CCCCccEEeeHHHHHHHhCCCh-hHHHHhhhcccCCCCCCCCcccCCCCccHHHHHHHHHhcCCHHHHHHHhhhcccCch
Q 020010 229 QDLDRWSFYTLKHYIAQYNCDP-HSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRD 307 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~e~~Gv~P-~q~~d~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~ygsle~il~~~~~~~~~~~ 307 (332)
.++.++.+.+.++||++| +||+|+++|+||+||||||| ||||||||.+||++|||+|+|+++++. .+++
T Consensus 170 ----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGV----pGIG~KTA~kLL~~~gsle~i~~~~~~--~~~~ 239 (290)
T 1exn_A 170 ----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGV----EGIGAKRGYNIIREFGNVLDIIDQLPL--PGKQ 239 (290)
T ss_dssp ----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCC----TTCCHHHHHHHHHHHCSHHHHHHHCSC--SCCC
T ss_pred ----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCC----CcCCHhHHHHHHHHcCCHHHHHHHHHH--hccH
Confidence 457899999999999999 99999999999999999999 999999999999999999999999984 2133
Q ss_pred HHHHHHHHhHHHHHhhcccceecc
Q 020010 308 YAQEALTKHADYLRRNYEVLALRR 331 (332)
Q Consensus 308 ~~~~~L~~~~~~~~~s~~L~~L~~ 331 (332)
+++++|++++|++++||+|++|++
T Consensus 240 ~~~~~L~~~~~~~~ls~~L~~i~~ 263 (290)
T 1exn_A 240 KYIQNLNASEELLFRNLILVDLPT 263 (290)
T ss_dssp HHHHHHHTCHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhceeee
Confidence 689999999999999999999986
No 2
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=100.00 E-value=6.8e-49 Score=373.72 Aligned_cols=184 Identities=20% Similarity=0.183 Sum_probs=152.8
Q ss_pred CCcEEEEeCcchhhhhcC---------chhhHHHHHHHHHHHHhc-----CCCcEEEEEcCCCCchhhhhhchhHHhcch
Q 020010 79 KKRVFFLDVNPLCYEGSR---------PSLQSFGRWLSLFFDQVS-----HADPVIAVFDGEGGTEHRRQLLPSYKAHRR 144 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~~---------p~~~~~~~~l~~ll~~i~-----~~~pvivvFD~~~~~~fR~el~p~YKanR~ 144 (332)
+++++|||||+++||++. |+....++|++++.+.+. .+++++||||++.+++||+++||+|||||+
T Consensus 12 ~~~llLIDgssl~~ra~~~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~ 91 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRG 91 (305)
T ss_dssp SCCEEEEEHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHH
T ss_pred CCCEEEEeccHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCC
Confidence 457999999999999852 333323346666555442 467799999985458999999999999999
Q ss_pred hhhhhhhhhhhcchhhHHHhH-HHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCcCccCC-CCe
Q 020010 145 KFLRQLTASQRFSRGRVGRSH-QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLIS-EDV 222 (332)
Q Consensus 145 ~~p~p~~~~~~~~~~~L~~ql-~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~DKDl~QLv~-~~v 222 (332)
++|+++..+. +.+.+|+ +.++++++++|||++..+||||||+|||||+++.+.|.+|+|+|+|||++||++ ++|
T Consensus 92 ~~PeeL~~Q~----~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V 167 (305)
T 3h7i_A 92 KAREESTWDW----EGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNV 167 (305)
T ss_dssp HHHHHCSSCH----HHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSE
T ss_pred CCCHHHHHHH----HHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCe
Confidence 9974422111 2344555 799999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEecCCCCCccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCCCcccCCCCccHH
Q 020010 223 QLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280 (332)
Q Consensus 223 ~v~~~~~~~~~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~K 280 (332)
++|++.+. +.|.++||+ |+|++|+++|+||+||||||| ||||++
T Consensus 168 ~~~~~~~~---------~~V~ek~Gv-P~q~iD~~aL~GDsSDNIPGV----pGIG~~ 211 (305)
T 3h7i_A 168 KQWSPMHK---------KWVKIKSGS-AEIDCMTKILKGDKKDNVASV----KVRSDF 211 (305)
T ss_dssp EEEETTTT---------EEECSSCSC-HHHHHHHHHHHCBGGGTBCCT----TSCTTH
T ss_pred EEEecCCH---------HHHHHHhCC-HHHHhhHHheeCccccCCCCC----CcCCcc
Confidence 99998642 346788999 999999999999999999999 999997
No 3
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=3e-51 Score=436.64 Aligned_cols=230 Identities=28% Similarity=0.462 Sum_probs=204.0
Q ss_pred CCCcEEEEeCcchhhhhcC--ch--------hhHHHHHHHHHHHHhcCC-CcEEEEEcCCCCchhhhhhchhHHhcchhh
Q 020010 78 SKKRVFFLDVNPLCYEGSR--PS--------LQSFGRWLSLFFDQVSHA-DPVIAVFDGEGGTEHRRQLLPSYKAHRRKF 146 (332)
Q Consensus 78 ~~~~vllIDg~~l~yra~~--p~--------~~~~~~~l~~ll~~i~~~-~pvivvFD~~~~~~fR~el~p~YKanR~~~ 146 (332)
.++++++|||++|+||++. |. .+++.+|++++.+.++.. .++++|||+. +++||+++|++||+||+++
T Consensus 10 ~~~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~-~~tfR~~~~~~YKa~R~~~ 88 (832)
T 1bgx_T 10 PKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAK-APSFRHEAYGGYKAGRAPT 88 (832)
T ss_dssp CCTTSCCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCS-SSCSSSGGGGTTTSCCCCC
T ss_pred hCCCEEEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCC-CccccccchHHHHhccccC
Confidence 3467999999999999852 21 124557788777776542 5568899985 6799999999999999998
Q ss_pred hhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCcCccCCCCeEEEe
Q 020010 147 LRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVM 226 (332)
Q Consensus 147 p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~DKDl~QLv~~~v~v~~ 226 (332)
| ++|..|++.++++|+.+|||++.+|||||||+||+|++++...|..|+|+|+|||++||++++|.++.
T Consensus 89 p-----------e~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~ 157 (832)
T 1bgx_T 89 P-----------EDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLH 157 (832)
T ss_dssp C-----------TTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCC
T ss_pred h-----------HHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEe
Confidence 5 56788999999999999999999999999999999999988889999999999999999999998888
Q ss_pred cCCCCCccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCCCcccCCCCccHHHHHHHHHhcCCHHHHHHHhhhcccCc
Q 020010 227 PLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGR 306 (332)
Q Consensus 227 ~~~~~~~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~ygsle~il~~~~~~~~~~ 306 (332)
+ ++ +.|+.+.+.++||++|+||+|+++|+||+||||||| ||||+|||.+||++|||+|+|+++++. ..
T Consensus 158 ~-~g----~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGV----pGIG~KtA~kLl~~~gsle~i~~~~~~-~~-- 225 (832)
T 1bgx_T 158 P-EG----YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGV----KGIGEKTARKLLEEWGSLEALLKNLDR-LK-- 225 (832)
T ss_dssp S-SS----CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCC----CCSSSCTTTTTGGGTTSSCSSSSSCCC-CC--
T ss_pred C-CC----cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCC----CCcCchHHHHHHHHCCCHHHHHHHHHH-hC--
Confidence 7 43 568899999999999999999999999999999999 999999999999999999999999984 22
Q ss_pred hHHHHHHHHhHHHHHhhcccceecc
Q 020010 307 DYAQEALTKHADYLRRNYEVLALRR 331 (332)
Q Consensus 307 ~~~~~~L~~~~~~~~~s~~L~~L~~ 331 (332)
++++++|.+++|++++|++|++|++
T Consensus 226 ~~~~~~l~~~~~~a~ls~~L~~i~~ 250 (832)
T 1bgx_T 226 PAIREKILAHMDDLKLSWDLAKVRT 250 (832)
T ss_dssp TTTSHHHHSSCSSTTSGGGSSCCCS
T ss_pred hHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 3578999999999999999999975
No 4
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=2.7e-42 Score=332.56 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=180.3
Q ss_pred CCcEEEEeCcchhhhhc--Cc------h-------hhHHHHHHHHHHHH-hcCCCcEEEEEcCCCCchhhhhhchhHHhc
Q 020010 79 KKRVFFLDVNPLCYEGS--RP------S-------LQSFGRWLSLFFDQ-VSHADPVIAVFDGEGGTEHRRQLLPSYKAH 142 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~--~p------~-------~~~~~~~l~~ll~~-i~~~~pvivvFD~~~~~~fR~el~p~YKan 142 (332)
.+++++|||++|+||++ .+ . ..++.+++.++++. ....+| ++||||. +++||++++++||++
T Consensus 20 ~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~P-v~vFDG~-~~~~k~~~~~~yk~~ 97 (326)
T 1a76_A 20 KGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITP-IWVFDGE-PPKLKEKTRKVRREM 97 (326)
T ss_dssp TTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEE-EEEECCC-SSCCCCSSCCSSCSS
T ss_pred CCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCCeE-EEEEeCc-CcccchhhHHHHHHH
Confidence 46799999999999974 11 1 14577888888776 345677 8899996 689999999999999
Q ss_pred chhhhhhhhhh---------hhcch---hhHHHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcC
Q 020010 143 RRKFLRQLTAS---------QRFSR---GRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASP 210 (332)
Q Consensus 143 R~~~p~p~~~~---------~~~~~---~~L~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~ 210 (332)
|.++|+..... .++.. .-...|++.++++|+.+|||++.+|| ||||+||+|+++ |..+.|+|+
T Consensus 98 R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-EAD~~ia~La~~----g~~~~I~S~ 172 (326)
T 1a76_A 98 KEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPS-EGEAQASYMAKK----GDVWAVVSQ 172 (326)
T ss_dssp SCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT----TSSSEEECS
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCc-cHHHHHHHHHHC----CCEEEEecC
Confidence 99886432110 00000 00123899999999999999999999 999999999984 888999999
Q ss_pred CCCcCccCCCCeEEEecCCCCCccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCC-CcccCCCCccHHHHHHHHHhc
Q 020010 211 DKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVP-GIQHVVPGFGRKTALKLLKKH 289 (332)
Q Consensus 211 DKDl~QLv~~~v~v~~~~~~~~~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIP-GI~~~~~GIG~KTA~kLL~~y 289 (332)
|+|++|+++++|.+..+.++ +.++.|+.+.+.+++|++|+||+|+++|+| |||+| || ||||||||.+||++
T Consensus 173 D~Dll~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sD~~p~Gv----pGiG~ktA~kli~~- 244 (326)
T 1a76_A 173 DYDALLYGAPRVVRNLTTTK-EMPELIELNEVLEDLRISLDDLIDIAIFMG--TDYNPGGV----KGIGFKRAYELVRS- 244 (326)
T ss_dssp SSGGGGGTCSEEEESSSSCS-SCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CTTSTTTT----TTCCHHHHHHHHHH-
T ss_pred CcccceecCCEEEEeecCCC-CceEEEEHHHHHHHcCCCHHHHHHHHHHcC--CCCCCCCC----CCcCHHHHHHHHHc-
Confidence 99999999988755444333 357889999999999999999999999999 99999 99 99999999999999
Q ss_pred CCHHHHH-HHhhhcccCchHHHHHHHHhHHHHHhhcccce
Q 020010 290 GSLENLL-NAAAVRTVGRDYAQEALTKHADYLRRNYEVLA 328 (332)
Q Consensus 290 gsle~il-~~~~~~~~~~~~~~~~L~~~~~~~~~s~~L~~ 328 (332)
||+|+|+ ++++. . +++ .++++|++|++
T Consensus 245 gsle~i~~~~~~~--~--~~~--------~~~~l~~~l~~ 272 (326)
T 1a76_A 245 GVAKDVLKKEVEY--Y--DEI--------KRIFKEPKVTD 272 (326)
T ss_dssp TCHHHHHHHHSTT--H--HHH--------HHHHHSCCCCC
T ss_pred CCHHHHHHHHHhH--H--HHH--------HHHHhCCCCCC
Confidence 9999999 99873 1 111 28899999986
No 5
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-42 Score=335.27 Aligned_cols=210 Identities=19% Similarity=0.260 Sum_probs=141.5
Q ss_pred CCcEEEEeCcchhhhhc--Cc------h-------hhHHHHHHHHHHHHhcC-CCcEEEEEcCCCCchhhhhhchhHHhc
Q 020010 79 KKRVFFLDVNPLCYEGS--RP------S-------LQSFGRWLSLFFDQVSH-ADPVIAVFDGEGGTEHRRQLLPSYKAH 142 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~--~p------~-------~~~~~~~l~~ll~~i~~-~~pvivvFD~~~~~~fR~el~p~YKan 142 (332)
.+++++|||++|+||++ .+ . ..++.+|+.++++.+.. .+| ++||||. +++||++++++||++
T Consensus 17 ~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~P-v~vFDG~-~~~~r~~~~~~yk~~ 94 (346)
T 2izo_A 17 KGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIP-IYVFDGK-PPEQKSEELERRRKA 94 (346)
T ss_dssp TTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEE-EEEECC-----------------
T ss_pred CCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcE-EEEECCC-CcchhhhHHHHHHHH
Confidence 46799999999999974 22 1 14577888887777654 567 7899996 689999999999999
Q ss_pred chhhhhhhhhh---------hhcchh--hH-HHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcC
Q 020010 143 RRKFLRQLTAS---------QRFSRG--RV-GRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASP 210 (332)
Q Consensus 143 R~~~p~p~~~~---------~~~~~~--~L-~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~ 210 (332)
|.++|+..... .++.+. .+ ..|++.++++|+.+|||++.+|| ||||+||+|++ .|..+.|+|+
T Consensus 95 R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~-EADa~ia~La~----~g~~~~I~S~ 169 (346)
T 2izo_A 95 KEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPS-EGEAEAAYLNK----LGLSWAAASQ 169 (346)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH----TTSSSEEECS
T ss_pred HHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCC-cHHHHHHHHHh----CCCeEEEECC
Confidence 99886432100 000000 00 26899999999999999999999 99999999997 4888999999
Q ss_pred CCCcCccCCCCeEEEecCCCCC-----------ccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCC-CcccCCCCcc
Q 020010 211 DKDFKQLISEDVQLVMPLQDLD-----------RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVP-GIQHVVPGFG 278 (332)
Q Consensus 211 DKDl~QLv~~~v~v~~~~~~~~-----------~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIP-GI~~~~~GIG 278 (332)
|+|++||++++|.+.....+.. .++.|+.+.+.+++|++|+||+|+++|+| |||+| || ||||
T Consensus 170 D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~D~~p~Gv----~GIG 243 (346)
T 2izo_A 170 DYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGI----RGIG 243 (346)
T ss_dssp SSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CSSSTTCS----TTCC
T ss_pred CCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcC--CCCCCCCC----CCcC
Confidence 9999999999876554322110 35679999999999999999999999999 99999 99 9999
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhh
Q 020010 279 RKTALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 279 ~KTA~kLL~~ygsle~il~~~~~ 301 (332)
+|||.+||++|||+|+|+++++.
T Consensus 244 ~KtA~kLi~~~gsle~i~~~~~~ 266 (346)
T 2izo_A 244 PERALKIIKKYGKIEKAMEYGEI 266 (346)
T ss_dssp HHHHHHHHHHSSCC---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999884
No 6
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=1.2e-41 Score=330.71 Aligned_cols=209 Identities=20% Similarity=0.205 Sum_probs=170.1
Q ss_pred CCCcEEEEeCcchhhhhc--Cc-----h-------hhHHHHHHHHHHHHhc-CCCcEEEEEcCCCCchhhhhhchhHHhc
Q 020010 78 SKKRVFFLDVNPLCYEGS--RP-----S-------LQSFGRWLSLFFDQVS-HADPVIAVFDGEGGTEHRRQLLPSYKAH 142 (332)
Q Consensus 78 ~~~~vllIDg~~l~yra~--~p-----~-------~~~~~~~l~~ll~~i~-~~~pvivvFD~~~~~~fR~el~p~YKan 142 (332)
-.+++++|||++++||++ .+ . .+++.+|+.++++.+. ..+| ++||||. +++||++++++||++
T Consensus 25 l~gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~P-~~VFDg~-~~~~r~~~~~~yk~~ 102 (341)
T 3q8k_A 25 YFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKP-VYVFDGK-PPQLKSGELAKRSER 102 (341)
T ss_dssp GTTCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCEE-EEEECCC-CCGGGHHHHHHHHHH
T ss_pred hCCCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHHHCCCCc-eEEEeCC-CcccchhhhHHHHHH
Confidence 357899999999999984 22 1 2467888888888776 4677 4489996 799999999999999
Q ss_pred chhhhhhhhhhh-hcchhhH-----------HHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcC
Q 020010 143 RRKFLRQLTASQ-RFSRGRV-----------GRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASP 210 (332)
Q Consensus 143 R~~~p~p~~~~~-~~~~~~L-----------~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~ 210 (332)
|.+..+...... .-.++++ ..|++.++++|+++|||++.+|| ||||+||+|+++ |..++|+|+
T Consensus 103 R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~-EADd~ia~La~~----g~v~~i~s~ 177 (341)
T 3q8k_A 103 RAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVKA----GKVYAAATE 177 (341)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT----TSSSEEECS
T ss_pred HhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCc-cHHHHHHHHHhc----CCeEEEEcC
Confidence 986432210000 0012556 78999999999999999999999 999999999984 667778999
Q ss_pred CCCcCccCCCCeEEEecC----CCCCccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCCCcccCCCCccHHHHHHHH
Q 020010 211 DKDFKQLISEDVQLVMPL----QDLDRWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLL 286 (332)
Q Consensus 211 DKDl~QLv~~~v~v~~~~----~~~~~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL 286 (332)
|+|++|+++++| +..+ ++...+..++.+.+.+++|++|+||+|+++|+| ||++||| ||||||||.+||
T Consensus 178 D~D~l~~~~~~v--~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~D~~~gi----pGiG~KtA~kll 249 (341)
T 3q8k_A 178 DMDCLTFGSPVL--MRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESI----RGIGPKRAVDLI 249 (341)
T ss_dssp CTHHHHTTCSEE--EESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHC--CSSSCCC----TTCCHHHHHHHH
T ss_pred CccccccCCcEE--EEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcC--CCCCCCC----CCccHHHHHHHH
Confidence 999999999855 3322 122246789999999999999999999999999 7888889 999999999999
Q ss_pred HhcCCHHHHHHHhhh
Q 020010 287 KKHGSLENLLNAAAV 301 (332)
Q Consensus 287 ~~ygsle~il~~~~~ 301 (332)
++|||+|+|+++++.
T Consensus 250 ~~~gsle~i~~~~~~ 264 (341)
T 3q8k_A 250 QKHKSIEEIVRRLDP 264 (341)
T ss_dssp HHHCSHHHHHHHSCT
T ss_pred HHcCCHHHHHHHHHh
Confidence 999999999999974
No 7
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=2.5e-41 Score=326.99 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=169.1
Q ss_pred CCcEEEEeCcchhhhhc--Cc------h-------hhHHHHHHHHHHHHhcC-CCcEEEEEcCCCCchhhhhhchhHHhc
Q 020010 79 KKRVFFLDVNPLCYEGS--RP------S-------LQSFGRWLSLFFDQVSH-ADPVIAVFDGEGGTEHRRQLLPSYKAH 142 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~--~p------~-------~~~~~~~l~~ll~~i~~-~~pvivvFD~~~~~~fR~el~p~YKan 142 (332)
.+++++|||++|+||++ .+ . .+++.+|+.++++.++. .+| ++||||. +++||++++++||++
T Consensus 20 ~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i~P-v~vFDg~-~~~~R~~~~~~yk~~ 97 (336)
T 1rxw_A 20 SGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRP-VFVFDGE-PPEFKKAEIEERKKR 97 (336)
T ss_dssp TTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEE-EEEECCS-CCGGGHHHHHHHHHH
T ss_pred CCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCCEE-EEEEcCC-CCcccccchHHHHHH
Confidence 46799999999999975 22 1 14577888888777653 477 8899996 689999999999999
Q ss_pred chhhhhhhhhhhhcchhhHHH-----------hHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Q 020010 143 RRKFLRQLTASQRFSRGRVGR-----------SHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPD 211 (332)
Q Consensus 143 R~~~p~p~~~~~~~~~~~L~~-----------ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~D 211 (332)
|.++|+..........+++.. |++.++++|+++|||++.+|| |||+.||++++ .|..+.|+|+|
T Consensus 98 R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-eAEA~lA~la~----~g~~~~I~S~D 172 (336)
T 1rxw_A 98 RAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPS-EGEAQAAYMAA----KGDVEYTGSQD 172 (336)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSS-CHHHHHHHHHH----TTSSSEEECSS
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCc-hHHHHHHHHHH----cCCeeEEEcCC
Confidence 999874321100000023444 899999999999999999999 89999999884 68899999999
Q ss_pred CCcCccCCCCe----EEE----ecCCCC--C-ccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCCCcccCCCCccHH
Q 020010 212 KDFKQLISEDV----QLV----MPLQDL--D-RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRK 280 (332)
Q Consensus 212 KDl~QLv~~~v----~v~----~~~~~~--~-~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~K 280 (332)
+|++||++++| .++ .|.++. . .++.|+.+.+.+++|++|+||+|+++|+| ||||||| ||||+|
T Consensus 173 ~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sD~ipGv----~GiG~K 246 (336)
T 1rxw_A 173 YDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVG--TDYNEGV----KGVGVK 246 (336)
T ss_dssp SHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--BTTBCCC----TTCCHH
T ss_pred CCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcC--CCCCCCC----CCcCHH
Confidence 99999999987 333 222211 0 45689999999999999999999999999 9999999 999999
Q ss_pred HHHHHHHhcCCHHHHHHHhhh
Q 020010 281 TALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 281 TA~kLL~~ygsle~il~~~~~ 301 (332)
||.+||++|||+|+|+++++.
T Consensus 247 tA~kLl~~~gsle~i~~~~~~ 267 (336)
T 1rxw_A 247 KALNYIKTYGDIFRALKALKV 267 (336)
T ss_dssp HHHHHHHHHSSHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHhCCC
Confidence 999999999999999999873
No 8
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=2.7e-41 Score=330.66 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=170.4
Q ss_pred CCCCcEEEEeCcchhhhhc--C------ch-------hhHHHHHHHHHHHHhcC-CCcEEEEEcCCCCchhhhhhchhHH
Q 020010 77 KSKKRVFFLDVNPLCYEGS--R------PS-------LQSFGRWLSLFFDQVSH-ADPVIAVFDGEGGTEHRRQLLPSYK 140 (332)
Q Consensus 77 ~~~~~vllIDg~~l~yra~--~------p~-------~~~~~~~l~~ll~~i~~-~~pvivvFD~~~~~~fR~el~p~YK 140 (332)
.-.+++++|||++|+||++ . |. .+++.+|+.++++.+.. .+| ++||||. +++||++++++||
T Consensus 32 ~l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~i~P-v~VFDg~-~p~~K~~~~~~yK 109 (363)
T 3ory_A 32 ILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKP-VYVFDGK-PPELKAREIERRK 109 (363)
T ss_dssp GGTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEE-EEEECSS-CGGGCHHHHHHHH
T ss_pred HhCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcCCCc-EEEEcCC-CccchHHHHHHHH
Confidence 3457899999999999963 1 11 24677888888776653 678 5789996 7999999999999
Q ss_pred hcchhhhhhhhhhhhcc-hhhH-----------HHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEE
Q 020010 141 AHRRKFLRQLTASQRFS-RGRV-----------GRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVA 208 (332)
Q Consensus 141 anR~~~p~p~~~~~~~~-~~~L-----------~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~Iv 208 (332)
++|.++|+....+.... .++. ..|++.++++|+++|||++.+|| ||||+||+|++ .|..+.|+
T Consensus 110 ~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apg-EADaqiA~La~----~g~~~~I~ 184 (363)
T 3ory_A 110 AVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPA-EGEAQAAYIVK----KGDAYASA 184 (363)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH----TTSCSEEE
T ss_pred HhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCc-cHHHHHHHHHH----CCCeEEEE
Confidence 99999874422110000 0000 12589999999999999999999 99999999985 58899999
Q ss_pred cCCCCcCccCCCCeEEEecCCCC------C-----ccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCC-CcccCCCC
Q 020010 209 SPDKDFKQLISEDVQLVMPLQDL------D-----RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVP-GIQHVVPG 276 (332)
Q Consensus 209 S~DKDl~QLv~~~v~v~~~~~~~------~-----~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIP-GI~~~~~G 276 (332)
|+|+|++||++++|.......+. + ..+.|+.+.+.+++|++|+||+|+++|+| |||+| || ||
T Consensus 185 S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sDy~p~GV----pG 258 (363)
T 3ory_A 185 SQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLG--TDYNPDGF----EG 258 (363)
T ss_dssp CSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC--BTTBTTCS----TT
T ss_pred CCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhC--CCCCCCCC----CC
Confidence 99999999999876432221110 0 24689999999999999999999999999 99999 99 99
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHhhh
Q 020010 277 FGRKTALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 277 IG~KTA~kLL~~ygsle~il~~~~~ 301 (332)
||+|||.+||++|||+|+|+++++.
T Consensus 259 IG~KtA~kLl~~~gsle~il~~~~~ 283 (363)
T 3ory_A 259 IGPKKALQLVKAYGGIEKIPKPILK 283 (363)
T ss_dssp CCHHHHHHHHHHHTSSTTSCGGGCC
T ss_pred cCHHHHHHHHHHcCCHHHHHHhccc
Confidence 9999999999999999999999873
No 9
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=3.6e-40 Score=319.41 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=169.3
Q ss_pred CCcEEEEeCcchhhhhc--Cc------h-------hhHHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhch------
Q 020010 79 KKRVFFLDVNPLCYEGS--RP------S-------LQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLP------ 137 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~--~p------~-------~~~~~~~l~~ll~~i~~~~pvivvFD~~~~~~fR~el~p------ 137 (332)
.+++++|||++|+||++ .+ . ..++.+++.++++.++.....++||||. +++||++.++
T Consensus 20 ~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~-~~~~K~~~~~~R~~~r 98 (340)
T 1b43_A 20 YGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGE-PPEFKKKELEKRREAR 98 (340)
T ss_dssp TTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCS-CCCCSSCSSTTCCCCT
T ss_pred CCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCC-CchhhhhhHHHHHHHH
Confidence 46799999999999984 11 1 1456788888877776555568899996 6899999988
Q ss_pred ---------hHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEE
Q 020010 138 ---------SYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVA 208 (332)
Q Consensus 138 ---------~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~Iv 208 (332)
.||++|.++|+... .-...-...|++.++++|+++|||++.+| |||||+||+|+++ |..+.|+
T Consensus 99 ~~~~~~~~~~yk~g~~~~~~~~~---~~~~~vt~~~~~~~~~lL~~~gip~i~ap-~EADa~iA~La~~----g~~~~i~ 170 (340)
T 1b43_A 99 EEAEEKWREALEKGEIEEARKYA---QRATRVNEMLIEDAKKLLELMGIPIVQAP-SEGEAQAAYMAAK----GSVYASA 170 (340)
T ss_dssp THHHHHHHHHHHHSCHHHHHHHH---HTSGGGTHHHHHHHHHHHHHHTCCEEECS-SCHHHHHHHHHHH----TSSSEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH---HhcCCCCHHHHHHHHHHHHHcCCcEEEcC-hhHHHHHHHHHHc----CCEEEEE
Confidence 79999987752210 00000115789999999999999999999 7999999999985 6788899
Q ss_pred cCCCCcCccCCCCeEEEecCCCCC-----------ccEEeeHHHHHHHhCCChhHHHHhhhcccCCCCCCC-CcccCCCC
Q 020010 209 SPDKDFKQLISEDVQLVMPLQDLD-----------RWSFYTLKHYIAQYNCDPHSELSLRCIVGDDVDGVP-GIQHVVPG 276 (332)
Q Consensus 209 S~DKDl~QLv~~~v~v~~~~~~~~-----------~~~~~~~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIP-GI~~~~~G 276 (332)
|+|+|++|+++++|.+..+.++.. .++.|+.+.+.+++|++|+||+|+++|+| |||+| || ||
T Consensus 171 S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~Dy~p~gv----~G 244 (340)
T 1b43_A 171 SQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVG--TDYNPGGI----KG 244 (340)
T ss_dssp CSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CTTSTTCS----TT
T ss_pred ccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcC--CCCCCCCC----CC
Confidence 999999999999775543333211 34679999999999999999999999999 99999 99 99
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHhhh
Q 020010 277 FGRKTALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 277 IG~KTA~kLL~~ygsle~il~~~~~ 301 (332)
||+|||.+||++|||+|+++++.+.
T Consensus 245 iG~ktA~kli~~~gsle~il~~~~~ 269 (340)
T 1b43_A 245 IGLKKALEIVRHSKDPLAKFQKQSD 269 (340)
T ss_dssp CCHHHHHHHHHTCSSGGGGTGGGCS
T ss_pred ccHHHHHHHHHHcCCHHHHHcCCCC
Confidence 9999999999999999999999763
No 10
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=7.8e-39 Score=314.59 Aligned_cols=209 Identities=20% Similarity=0.215 Sum_probs=158.1
Q ss_pred CCcEEEEeCcchhhhhcC--ch------------hhHHHHHHHHHHHHhcC-CCcEEEEEcCCCCchhhhhhchhHHhcc
Q 020010 79 KKRVFFLDVNPLCYEGSR--PS------------LQSFGRWLSLFFDQVSH-ADPVIAVFDGEGGTEHRRQLLPSYKAHR 143 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~~--p~------------~~~~~~~l~~ll~~i~~-~~pvivvFD~~~~~~fR~el~p~YKanR 143 (332)
.+++++|||++|+||++. +. ..++.+|+.++++.+.. .+|+ +||||. +++||+++++.||++|
T Consensus 26 ~g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~-~VFDG~-~~~~K~~~~~~yk~~R 103 (379)
T 1ul1_X 26 FGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPV-YVFDGK-PPQLKSGELAKRSERR 103 (379)
T ss_dssp TTCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCEE-EEECCS-CCSCCCCCCCCC----
T ss_pred CCCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCeE-EEEeCC-CcccccchHHHHHhhh
Confidence 467999999999999842 11 13467788888887765 6784 499996 6899999999999999
Q ss_pred hhhhhhhhhhh-hcchhhH-----------HHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Q 020010 144 RKFLRQLTASQ-RFSRGRV-----------GRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPD 211 (332)
Q Consensus 144 ~~~p~p~~~~~-~~~~~~L-----------~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~D 211 (332)
.++++...... .-.++++ ..|++.++++|+.+|||++.+|| ||||+||+|+++ |..+.|+|+|
T Consensus 104 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apg-EADd~iA~La~~----g~~~~iiS~D 178 (379)
T 1ul1_X 104 AEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVKA----GKVYAAATED 178 (379)
T ss_dssp -------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHH----TSSSEEECSC
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCC-cHHHHHHHHHhc----CCeEEEEecC
Confidence 98754321000 0001344 57899999999999999999999 999999999985 5667899999
Q ss_pred CCcCccCCCCeEEEecCC--CCCccEEeeHHHHHHHhCCChhHHHHhhhccc-CCCCCCCCcccCCCCccHHHHHHHHHh
Q 020010 212 KDFKQLISEDVQLVMPLQ--DLDRWSFYTLKHYIAQYNCDPHSELSLRCIVG-DDVDGVPGIQHVVPGFGRKTALKLLKK 288 (332)
Q Consensus 212 KDl~QLv~~~v~v~~~~~--~~~~~~~~~~~~v~e~~Gv~P~q~~d~~aL~G-D~sDNIPGI~~~~~GIG~KTA~kLL~~ 288 (332)
+|++|+++++|.+..... +...+..|+.+.+.+++|++|+||+|+++|+| |.+| || ||||+|||.+||++
T Consensus 179 ~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d---~I----pGIG~KtA~kLl~~ 251 (379)
T 1ul1_X 179 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCE---SI----RGIGPKRAVDLIQK 251 (379)
T ss_dssp THHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSC---CC----TTCCHHHHHHHHHH
T ss_pred cCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCC---CC----CCcCHHHHHHHHHH
Confidence 999999999865544321 12346789999999999999999999999999 6665 55 88899999999999
Q ss_pred cCCHHHHHHHhhh
Q 020010 289 HGSLENLLNAAAV 301 (332)
Q Consensus 289 ygsle~il~~~~~ 301 (332)
|||+|+|+++++.
T Consensus 252 ~gsle~i~~~~~~ 264 (379)
T 1ul1_X 252 HKSIEEIVRRLDP 264 (379)
T ss_dssp SSSHHHHHTTCCC
T ss_pred cCCHHHHHHHHHh
Confidence 9999999999874
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=5.8e-34 Score=277.74 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=148.5
Q ss_pred CCcEEEEeCcchhhhhc----------CchhhHHHHHHHHHHHHh-c-CCCcEEEEEcCCCCchhhhhh-----------
Q 020010 79 KKRVFFLDVNPLCYEGS----------RPSLQSFGRWLSLFFDQV-S-HADPVIAVFDGEGGTEHRRQL----------- 135 (332)
Q Consensus 79 ~~~vllIDg~~l~yra~----------~p~~~~~~~~l~~ll~~i-~-~~~pvivvFD~~~~~~fR~el----------- 135 (332)
.++.+.|||++|+||+. .++ ..+.+++.+.++.+ . ..+| ++||||...+..|...
T Consensus 23 ~Gk~vaIDas~wL~~~~~~~~~~l~~G~~t-~~l~~~~~r~l~~L~~~gI~P-vfVFDG~~~p~Kk~~~~~Rr~~r~~~~ 100 (352)
T 3qe9_Y 23 KGQVVAVDTYCWLHKGAIACAEKLAKGEPT-DRYVGFCMKFVNMLLSHGIKP-ILVFDGCTLPSKKEVERSRRERRQANL 100 (352)
T ss_dssp TTSEEEEETHHHHHHHHHHTHHHHHTTCCC-CHHHHHHHHHHHHHHHTTCEE-EEEECCSCCTTTHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecHHHHHHhhhccchhhcCCCCc-HHHHHHHHHHHHHHHHcCCEE-EEEECCCCcHHHHHHHHHHHHHHHHHH
Confidence 46899999999999953 232 23556666555543 2 3566 7799996434444433
Q ss_pred ---chhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 020010 136 ---LPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVASPDK 212 (332)
Q Consensus 136 ---~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS~DK 212 (332)
...|+++|...... .+...-.-...+++.++++|+++|||++.+| |||||+||+|++ .|..+.|+|+|+
T Consensus 101 ~~~~~~~~~g~~~~a~~---~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap-~EADaqiA~La~----~g~~~~I~S~D~ 172 (352)
T 3qe9_Y 101 LKGKQLLREGKVSEARE---CFTRSINITHAMAHKVIKAARSQGVDCLVAP-YEADAQLAYLNK----AGIVQAIITEDS 172 (352)
T ss_dssp HHHHHHTTSSCCHHHHH---HHGGGCCCCHHHHHHHHHHHHHTTCEEEECS-SCHHHHHHHHHH----TTSCSEEECSCG
T ss_pred HHHHHHHHhCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCCcEEECC-cchHHHHHHHHH----CCCeEEEEeCCc
Confidence 23344443221100 0000000112567899999999999999987 799999999997 488899999999
Q ss_pred CcCccCCCCeEEEecCCCCCccEEeeHHHH--HHHhC--CChhHHHHhhhcccCCCCCCCCcccCCCCccHHHHHHHHHh
Q 020010 213 DFKQLISEDVQLVMPLQDLDRWSFYTLKHY--IAQYN--CDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKK 288 (332)
Q Consensus 213 Dl~QLv~~~v~v~~~~~~~~~~~~~~~~~v--~e~~G--v~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~ 288 (332)
|++||++++|. ++.... +....++.+.+ .+++| ++|+||+|+++|+| |||+||| ||||+|||.+||++
T Consensus 173 Dll~~~~~~v~-~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G--~D~~pgv----~GiG~ktA~kli~~ 244 (352)
T 3qe9_Y 173 ALLAFGCKKVI-LKMDQF-GNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSG--CDYLSSL----RGIGLAKACKVLRL 244 (352)
T ss_dssp GGGGGTCSEEE-ESCCTT-SEEEEEEGGGGTTCCTTCSSCCHHHHHHHHHHHC--CSSSCCC----TTCCHHHHHHHHHH
T ss_pred CcccccCCeEE-EeccCC-CCcEEEeHHHHHHHHHhCCCCCHHHHHHHHHhcC--CCCCCCC----CCeeHHHHHHHHHH
Confidence 99999998763 222221 22345777775 57889 99999999999999 9999999 99999999999999
Q ss_pred c--CCHHHHHHHhhh
Q 020010 289 H--GSLENLLNAAAV 301 (332)
Q Consensus 289 y--gsle~il~~~~~ 301 (332)
| ||+|+++++++.
T Consensus 245 ~~~~~l~~il~~~~~ 259 (352)
T 3qe9_Y 245 ANNPDIVKVIKKIGH 259 (352)
T ss_dssp CCCSCHHHHHTTHHH
T ss_pred hCCCCHHHHHHHHHh
Confidence 9 799999999874
No 12
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.47 E-value=0.0014 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
||||+|++.+||+.|||+++|.++-
T Consensus 10 pGIG~kr~~~LL~~Fgs~~~i~~As 34 (63)
T 2a1j_A 10 PGVNAKNCRSLMHHVKNIAELAALS 34 (63)
T ss_dssp TTCCHHHHHHHHHHCSSHHHHHTCC
T ss_pred CCCCHHHHHHHHHHcCCHHHHHHCC
Confidence 8999999999999999999998653
No 13
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.94 E-value=0.0047 Score=48.08 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
||||+|++.+||+.|||+++|.++-
T Consensus 24 pGIG~kr~~~LL~~FgSl~~i~~AS 48 (84)
T 1z00_B 24 PGVNAKNCRSLMHHVKNIAELAALS 48 (84)
T ss_dssp SSCCHHHHHHHHHHSSCHHHHHHSC
T ss_pred CCCCHHHHHHHHHHcCCHHHHHHCC
Confidence 8889999999999999999998764
No 14
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.72 E-value=0.003 Score=47.70 Aligned_cols=29 Identities=41% Similarity=0.524 Sum_probs=25.6
Q ss_pred CCCcccCCCCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 267 IPGI~~~~~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
+-+| ||||+++|.+|++.||++++++++-
T Consensus 26 L~~I----~gIG~~~A~~Ll~~fgsl~~l~~a~ 54 (78)
T 1kft_A 26 LETI----EGVGPKRRQMLLKYMGGLQGLRNAS 54 (78)
T ss_dssp GGGC----TTCSSSHHHHHHHHHSCHHHHHHCC
T ss_pred HhcC----CCCCHHHHHHHHHHcCCHHHHHHCC
Confidence 4467 9999999999999999999998763
No 15
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=95.67 E-value=0.0064 Score=44.85 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
||||+++|.+|++.|||+++++++-
T Consensus 20 ~giG~~~a~~Ll~~fgs~~~l~~a~ 44 (75)
T 1x2i_A 20 PHVSATLARRLLKHFGSVERVFTAS 44 (75)
T ss_dssp TTCCHHHHHHHHHHHCSHHHHHHCC
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCC
Confidence 9999999999999999999998753
No 16
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.53 E-value=0.0075 Score=46.59 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
||||+++|.+|++.|||+++++++-
T Consensus 25 pgIG~~~A~~Ll~~fgsl~~l~~a~ 49 (89)
T 1z00_A 25 KSVNKTDSQTLLTTFGSLEQLIAAS 49 (89)
T ss_dssp SSCCHHHHHHHHHHTCBHHHHHHCC
T ss_pred CCCCHHHHHHHHHHCCCHHHHHhCC
Confidence 9999999999999999999998753
No 17
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.20 E-value=0.0081 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.4
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHH
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNA 298 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~ 298 (332)
||||+++|.+|++.||++++++++
T Consensus 38 pgIG~~~A~~Ll~~fgs~~~l~~a 61 (91)
T 2a1j_B 38 KSVNKTDSQTLLTTFGSLEQLIAA 61 (91)
T ss_dssp TTCCHHHHHHHHHHHSSHHHHHSC
T ss_pred CCCCHHHHHHHHHHCCCHHHHHhC
Confidence 999999999999999999999865
No 18
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=94.93 E-value=0.032 Score=49.83 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHhcCCCcEEecCCch--------HHHHHHHHHHHHHhCCCeEEEEcCCCCcCccCCCCeEEEecCCCCCccEEeeHH
Q 020010 169 LDVLGKCNVPVVKIEGHE--------ADDVIATLVGQVLQKGYRAVVASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLK 240 (332)
Q Consensus 169 ~elL~~~gi~~i~~~g~E--------ADDvIAtLa~~~~~~g~~v~IvS~DKDl~QLv~~~v~v~~~~~~~~~~~~~~~~ 240 (332)
.++.+.+..+++.++|.. .+++.+.|+.-....|..++..++..|..+++..-.......... ... +.
T Consensus 73 ~~l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l~~l~~~~~~~~~~-ai~-~~-- 148 (219)
T 2bgw_A 73 SRLAEHYETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVIESLARLSTREGGQ-RIV-IH-- 148 (219)
T ss_dssp HHHHHHCSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHHHHHHHHHSCBCCT-TCC-CC--
T ss_pred HHHHHhcCCcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHHHHHHHhccccccc-ccc-cc--
Confidence 334444677877777653 789999998776677888888888888666653211100000000 000 00
Q ss_pred HHHHHhCCChhHHHHhhhcccCCCCCCCCcccCCCCccHHHHHHHHHhcCCHHHHHHH
Q 020010 241 HYIAQYNCDPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNA 298 (332)
Q Consensus 241 ~v~e~~Gv~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~ygsle~il~~ 298 (332)
-...+....+....+ +-|| ||||+++|..|++.|||+++++++
T Consensus 149 -----~~~~~~~~~~~~~~~------L~~i----~gVg~~~a~~Ll~~fgs~~~l~~a 191 (219)
T 2bgw_A 149 -----KKPRLSDVREWQLYI------LQSF----PGIGRRTAERILERFGSLERFFTA 191 (219)
T ss_dssp -----CCCCCCHHHHHHHHH------HHTS----TTCCHHHHHHHHHHHSSHHHHTTC
T ss_pred -----cccccccHHHHHHHH------HhcC----CCCCHHHHHHHHHHcCCHHHHHhC
Confidence 001122211111111 1256 999999999999999999999764
No 19
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=94.27 E-value=0.019 Score=52.28 Aligned_cols=25 Identities=44% Similarity=0.707 Sum_probs=22.9
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
||||+++|.+|++.|||+++|.++.
T Consensus 174 pGIG~k~ak~Ll~~FgSl~~i~~As 198 (220)
T 2nrt_A 174 PGIGPIRKKKLIEHFGSLENIRSAS 198 (220)
T ss_dssp TTCCHHHHHHHHHHHCSHHHHHTSC
T ss_pred CCcCHHHHHHHHHHcCCHHHHHhCC
Confidence 8889999999999999999987654
No 20
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.03 E-value=0.028 Score=51.34 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=0.0
Q ss_pred CCCcccCCCCccHHHHHHHHHhcCCHHHHHHHhh
Q 020010 267 VPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAA 300 (332)
Q Consensus 267 IPGI~~~~~GIG~KTA~kLL~~ygsle~il~~~~ 300 (332)
+-|| ||||+++|.+|++.|||+++|.++..
T Consensus 175 L~~I----pGIG~k~ak~Ll~~FGSl~~i~~As~ 204 (226)
T 3c65_A 175 LDDI----PGVGEKRKKALLNYFGSVKKMKEATV 204 (226)
T ss_dssp ----------------------------------
T ss_pred cccc----CCCCHHHHHHHHHHhCCHHHHHhCCH
Confidence 3567 99999999999999999999987643
No 21
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=91.56 E-value=0.15 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.1
Q ss_pred CCccHHHHHHHHHhcCC---HHHHHH
Q 020010 275 PGFGRKTALKLLKKHGS---LENLLN 297 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygs---le~il~ 297 (332)
+|||||+|.+||..||+ .++|.+
T Consensus 79 ~GIGpk~A~~iL~~f~~~~l~~aI~~ 104 (203)
T 1cuk_A 79 NGVGPKLALAILSGMSAQQFVNAVER 104 (203)
T ss_dssp SSCCHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHhhCChHHHHHHHHh
Confidence 89999999999999998 666654
No 22
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=91.26 E-value=5.2 Score=44.23 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=62.2
Q ss_pred CCcEE----ecCCchHHHHHHHHHHHHHhC-----CCeEEEEcCCCCcCcc----CCCCeEEEecCC--C---------C
Q 020010 176 NVPVV----KIEGHEADDVIATLVGQVLQK-----GYRAVVASPDKDFKQL----ISEDVQLVMPLQ--D---------L 231 (332)
Q Consensus 176 gi~~i----~~~g~EADDvIAtLa~~~~~~-----g~~v~IvS~DKDl~QL----v~~~v~v~~~~~--~---------~ 231 (332)
++.+| .+|| |++==|....+..... ....+|++.|.|+..| ..+++.++...- + .
T Consensus 162 ~~~Vi~S~~~vPG-EGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~ 240 (1140)
T 2y35_A 162 RCTVILSGQEAPG-EGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEE 240 (1140)
T ss_dssp SSEEEEECSSSCS-CHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGG
T ss_pred ceEEEEeCCCCCC-chHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccc
Confidence 55555 3588 9998777776654332 3578999999999876 246788775210 0 0
Q ss_pred CccEEeeHHHHHHH----h--------CCChh----HHHHhhhcccCCCCCCCCcccCCCCcc
Q 020010 232 DRWSFYTLKHYIAQ----Y--------NCDPH----SELSLRCIVGDDVDGVPGIQHVVPGFG 278 (332)
Q Consensus 232 ~~~~~~~~~~v~e~----~--------Gv~P~----q~~d~~aL~GD~sDNIPGI~~~~~GIG 278 (332)
..+..++...+.+- + ..+.+ -|+.++.|+| .|.+|.+ |++.
T Consensus 241 ~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~G--NDFLP~l----p~l~ 297 (1140)
T 2y35_A 241 TRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVG--NDFIPHL----PCLH 297 (1140)
T ss_dssp CEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHC--CTTSCCC----TTCC
T ss_pred cceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhC--CccCCCC----Cccc
Confidence 23555665444331 1 22334 4667899999 6999999 8865
No 23
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=90.69 E-value=0.45 Score=42.04 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=55.3
Q ss_pred ccCCCCcEEEEeCcchhhhhcCc---hhhHHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhh
Q 020010 75 KTKSKKRVFFLDVNPLCYEGSRP---SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLT 151 (332)
Q Consensus 75 ~~~~~~~vllIDg~~l~yra~~p---~~~~~~~~l~~ll~~i~~~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~ 151 (332)
.....-|.++|||++.+|..+.. +..++.-.+..+.+. ..+. ++||+ ++||++.. |...+ . .
T Consensus 19 ~~~~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~r--Gh~~-v~Vfv----P~~r~~~~------~~~~~-~-~ 83 (185)
T 3v32_B 19 KEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLER--GHTD-ITVFV----PSWRKEQP------RPDVP-I-T 83 (185)
T ss_dssp ----CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHT--TCCC-EEEEE----EGGGGSCC------CTTSC-E-E
T ss_pred cCCCCCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHc--CCCc-eEEEe----chHhhhcc------cccCC-C-C
Confidence 33445678899999999987632 334443333333222 2333 55677 35776421 22111 0 0
Q ss_pred hhhhcchhhHHHhHHHHHHHHhcCCCcEEecCCc--------hHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 020010 152 ASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH--------EADDVIATLVGQVLQKGYRAVVASPDK 212 (332)
Q Consensus 152 ~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g~--------EADDvIAtLa~~~~~~g~~v~IvS~DK 212 (332)
. .+.+.++ ...|+-++...+. .+|-.|..+|.+ ...+|||.|+
T Consensus 84 -----------d-~~~L~~L-~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~-----~~g~IVSND~ 134 (185)
T 3v32_B 84 -----------D-QHILREL-EKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYE-----SDGIVVSNDT 134 (185)
T ss_dssp -----------C-THHHHHH-HHTTCEEEECCCC-------CCHHHHHHHHHHH-----TTCEEECSCC
T ss_pred -----------C-HHHHHHH-HHCCCEEECCCcccCCCcccCccHHHHHHHHHH-----cCCEEEeCcc
Confidence 0 1223333 3358777766663 467778888875 3347999884
No 24
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=88.68 E-value=0.21 Score=49.63 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
|||||.+|..||++|||++.+..+-
T Consensus 474 aGIGp~tAeRLLEkFGSVe~Vm~At 498 (685)
T 4gfj_A 474 RGIDRERAERLLKKYGGYSKVREAG 498 (685)
T ss_dssp TTCCHHHHHHHHHHHTSHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhcCHHHHHhCC
Confidence 9999999999999999999998753
No 25
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.59 E-value=0.19 Score=44.61 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=19.7
Q ss_pred CCccHHHHHHHHHhcCC---HHHHHH
Q 020010 275 PGFGRKTALKLLKKHGS---LENLLN 297 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygs---le~il~ 297 (332)
+|||||+|.++|..||+ .++|.+
T Consensus 78 ~GIGpk~A~~iL~~f~~~~l~~aI~~ 103 (191)
T 1ixr_A 78 SGVGPKVALALLSALPPRLLARALLE 103 (191)
T ss_dssp SCCCHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhCChHHHHHHHHh
Confidence 89999999999999998 555553
No 26
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=88.20 E-value=20 Score=38.52 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=59.7
Q ss_pred CCcEE----ecCCchHHHHHHHHHHHHHhC-----CCeEEEEcCCCCcCcc----CCCCeEEEecC---C----------
Q 020010 176 NVPVV----KIEGHEADDVIATLVGQVLQK-----GYRAVVASPDKDFKQL----ISEDVQLVMPL---Q---------- 229 (332)
Q Consensus 176 gi~~i----~~~g~EADDvIAtLa~~~~~~-----g~~v~IvS~DKDl~QL----v~~~v~v~~~~---~---------- 229 (332)
++.+| .+|| |++==|....+..... ....+|++.|-||..| ..+++++++-. .
T Consensus 195 ~~~VIlSd~~vPG-EGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~ 273 (899)
T 3fqd_A 195 NVRFILSDASVPG-EGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEE 273 (899)
T ss_dssp TCEEEEECTTSCS-CHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTT
T ss_pred cceEEEeCCCCCC-ccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhh
Confidence 55565 3488 9998887777654332 2578999999999886 35677777411 0
Q ss_pred --C---------------CCccEEeeHHHHHH----HhCC-------Ch----hHHHHhhhcccCCCCCCCCc
Q 020010 230 --D---------------LDRWSFYTLKHYIA----QYNC-------DP----HSELSLRCIVGDDVDGVPGI 270 (332)
Q Consensus 230 --~---------------~~~~~~~~~~~v~e----~~Gv-------~P----~q~~d~~aL~GD~sDNIPGI 270 (332)
+ ..++..+...-+.| ++.+ +- +-|+.+|.|+| -|.+|.+
T Consensus 274 ~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvG--NDFLPhl 344 (899)
T 3fqd_A 274 RLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVG--NDFLPHL 344 (899)
T ss_dssp TTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGC--CSSSCCC
T ss_pred hccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhC--cccCCCC
Confidence 0 02344555544433 3333 22 36788999999 6999999
No 27
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=87.03 E-value=0.2 Score=42.17 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=29.1
Q ss_pred CCccHHHHHHHHHh--cCCHHHHHHHhhhcccCchHHHHHHHHhHHH
Q 020010 275 PGFGRKTALKLLKK--HGSLENLLNAAAVRTVGRDYAQEALTKHADY 319 (332)
Q Consensus 275 ~GIG~KTA~kLL~~--ygsle~il~~~~~~~~~~~~~~~~L~~~~~~ 319 (332)
|||||++|.++++. |.|+|++++-- ..| ++..+.|+++++.
T Consensus 69 pGiGp~~A~~II~~GpF~svedL~~V~---GIg-~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 69 RGLYPTLAKLIVKNAPYESVEDVLNIP---GLT-ERQKQILRENLEH 111 (134)
T ss_dssp TTCTHHHHHHHHHTCCCSSGGGGGGCT---TCC-HHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHhCC---CCC-HHHHHHHHHhhcc
Confidence 99999999999974 77898887532 233 3445567666654
No 28
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=86.21 E-value=4.6 Score=44.61 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=57.3
Q ss_pred ecCCchHHHHHHHHHHHHHhC-----CCeEEEEcCCCCcCccC----CCCeEEEecC------C------CCCccEEeeH
Q 020010 181 KIEGHEADDVIATLVGQVLQK-----GYRAVVASPDKDFKQLI----SEDVQLVMPL------Q------DLDRWSFYTL 239 (332)
Q Consensus 181 ~~~g~EADDvIAtLa~~~~~~-----g~~v~IvS~DKDl~QLv----~~~v~v~~~~------~------~~~~~~~~~~ 239 (332)
..|| |++==|....+..... ....+|++.|.||..|. .++++++.-. + ....+..++.
T Consensus 172 ~vPG-EGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~~~f~~l~i 250 (1155)
T 3pie_A 172 EVPG-EGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHL 250 (1155)
T ss_pred CCCC-ccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCcccccccccccCCeEEEEH
Confidence 3488 9998888777664322 34789999999998763 4567776421 1 0123455665
Q ss_pred HHHHHH----h---------CCChh----HHHHhhhcccCCCCCCCCcccCCCCcc
Q 020010 240 KHYIAQ----Y---------NCDPH----SELSLRCIVGDDVDGVPGIQHVVPGFG 278 (332)
Q Consensus 240 ~~v~e~----~---------Gv~P~----q~~d~~aL~GD~sDNIPGI~~~~~GIG 278 (332)
.-+.|- + ..+-+ -|+.+|.|+| -|.+|.+ |.+.
T Consensus 251 ~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vG--NDFLPhl----P~l~ 300 (1155)
T 3pie_A 251 SILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIG--NDFLPNL----PDLH 300 (1155)
T ss_pred HHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhC--cccCCCC----CccC
Confidence 444331 1 12223 4567899999 6999999 8654
No 29
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=84.97 E-value=1.4 Score=39.96 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCCCcEEEEeCcchhhhhcCc---hhhHHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhhhh
Q 020010 77 KSKKRVFFLDVNPLCYEGSRP---SLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTAS 153 (332)
Q Consensus 77 ~~~~~vllIDg~~l~yra~~p---~~~~~~~~l~~ll~~i~~~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~~~ 153 (332)
.+.-|.++|||++.+|..+.. +..++.-.+..+.+. .... ++||+ ++||++. .|...+ . .
T Consensus 21 ~~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~R--Gh~~-V~Vfv----P~~r~~~------~~~~~~-~-~-- 83 (223)
T 3v33_A 21 GSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLER--GHTD-ITVFV----PSWRKEQ------PRPDVP-I-T-- 83 (223)
T ss_dssp --CBCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHTT--TCCC-EEEEE----EGGGGSC------CCTTSC-E-E--
T ss_pred cccCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHc--CCCc-eEEEe----chhhhcc------ccccCC-C-C--
Confidence 344578899999999987632 333333333322211 2233 55676 3577653 122111 0 0
Q ss_pred hhcchhhHHHhHHHHHHHHhcCCCcEEecCCc--------hHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 020010 154 QRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH--------EADDVIATLVGQVLQKGYRAVVASPDK 212 (332)
Q Consensus 154 ~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g~--------EADDvIAtLa~~~~~~g~~v~IvS~DK 212 (332)
. .+.+.++ ...|+-++...+. .+|-.|..+|.+ ...+|||.|.
T Consensus 84 ---------d-~~~L~~L-~k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~-----~~g~IVSND~ 134 (223)
T 3v33_A 84 ---------D-QHILREL-EKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYE-----SDGIVVSNDT 134 (223)
T ss_dssp ---------S-THHHHHH-HHTTCEEEECEEEETTEEEECCHHHHHHHHHHH-----TTCEEECSCC
T ss_pred ---------c-HHHHHHH-HHCCCEEECCCCCcCCccccccchHHHHHHHHH-----cCCEEEeCcc
Confidence 0 0223332 3357766655542 266668888865 3447999884
No 30
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=83.64 E-value=1.5 Score=44.72 Aligned_cols=26 Identities=38% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHh-cCCHHHHHHHhh
Q 020010 275 PGFGRKTALKLLKK-HGSLENLLNAAA 300 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsle~il~~~~ 300 (332)
+|||||||.+|+.. +.|+|++.+++.
T Consensus 103 ~GVGpk~A~~i~~~G~~s~edL~~a~~ 129 (578)
T 2w9m_A 103 RGLGPKKIRSLWLAGIDSLERLREAAE 129 (578)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 99999999999987 569999998754
No 31
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=82.97 E-value=0.56 Score=42.23 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.9
Q ss_pred CCccHHHHHHHHHhcCC
Q 020010 275 PGFGRKTALKLLKKHGS 291 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygs 291 (332)
+|||||+|..+|..||.
T Consensus 94 ~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 94 SGVGPRLAMAALAVHDA 110 (212)
T ss_dssp TTCCHHHHHHHHHHSCH
T ss_pred CCcCHHHHHHHHHhCCH
Confidence 88899999999998874
No 32
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=81.36 E-value=1.3 Score=43.24 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHHHhcCCHHHHHHHhh
Q 020010 274 VPGFGRKTALKLLKKHGSLENLLNAAA 300 (332)
Q Consensus 274 ~~GIG~KTA~kLL~~ygsle~il~~~~ 300 (332)
.|+||++.|.+|+++|||+++|+++..
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~AS~ 346 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKASV 346 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTCCH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCCH
Confidence 499999999999999999999998743
No 33
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=80.76 E-value=2.6 Score=42.82 Aligned_cols=26 Identities=46% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHh--cCCHHHHHHHhh
Q 020010 275 PGFGRKTALKLLKK--HGSLENLLNAAA 300 (332)
Q Consensus 275 ~GIG~KTA~kLL~~--ygsle~il~~~~ 300 (332)
+|||||||.+++.. +.|++++..++.
T Consensus 99 ~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 99 PGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp TTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 89999999999997 468999988764
No 34
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=77.85 E-value=0.45 Score=43.66 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHh-cCCHHHHHHH
Q 020010 275 PGFGRKTALKLLKK-HGSLENLLNA 298 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsle~il~~ 298 (332)
||||||+|.+|++. |+|+++|..+
T Consensus 21 pGIGpk~a~~Ll~~gf~sve~L~~a 45 (241)
T 1vq8_Y 21 SGVGPSKAESLREAGFESVEDVRGA 45 (241)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 99999999999998 9999999643
No 35
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=76.72 E-value=0.51 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHhh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAAA 300 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~~ 300 (332)
||||+++|..|++.|||+++|.++..
T Consensus 535 p~VG~~~ak~La~~Fgsle~L~~As~ 560 (615)
T 3sgi_A 535 RHVGPTAARALATEFGSLDAIAAAST 560 (615)
T ss_dssp --------------------------
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCCH
Confidence 99999999999999999999987643
No 36
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=76.53 E-value=1.1 Score=46.85 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAA 299 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~ 299 (332)
||||+++|.+|++.|||+++|.++.
T Consensus 518 ~~VG~~~Ak~La~~Fgsl~~l~~As 542 (671)
T 2owo_A 518 REVGEATAAGLAAYFGTLEALEAAS 542 (671)
T ss_dssp TTCCHHHHHHHHHHHCSHHHHHTCC
T ss_pred cCccHHHHHHHHHHcCCHHHHHhCC
Confidence 9999999999999999999997653
No 37
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=74.51 E-value=1.9 Score=41.13 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCccHHHHHHHHHh-cCCHHHHHHHhh
Q 020010 275 PGFGRKTALKLLKK-HGSLENLLNAAA 300 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsle~il~~~~ 300 (332)
+|||||||.+|.++ +.|+|++.+++.
T Consensus 102 ~GiG~k~a~~l~~~Gi~tledL~~a~~ 128 (335)
T 2bcq_A 102 WGAGTKTAQMWYQQGFRSLEDIRSQAS 128 (335)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHHCC
T ss_pred CCcCHHHHHHHHHcCCCCHHHHHHHhc
Confidence 99999999999887 349999988754
No 38
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=72.80 E-value=1.3 Score=46.34 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=22.0
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHH
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNA 298 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~ 298 (332)
||||+++|.+|++.|||+++|.++
T Consensus 513 ~~VG~~~Ak~La~~Fgsl~~l~~A 536 (667)
T 1dgs_A 513 PGVGEVLARNLARRFGTMDRLLEA 536 (667)
T ss_dssp SSCCHHHHHHHHHTTSBHHHHTTC
T ss_pred CCccHHHHHHHHHHcCCHHHHHhC
Confidence 999999999999999999998654
No 39
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=72.65 E-value=3.3 Score=39.42 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred CCccHHHHHHHHHh-cCCHHHHHHH
Q 020010 275 PGFGRKTALKLLKK-HGSLENLLNA 298 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsle~il~~ 298 (332)
+|||||||.+|.++ +.|+|++.++
T Consensus 104 ~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 104 SGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 99999999999988 3399999985
No 40
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=72.43 E-value=3.3 Score=34.96 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=31.3
Q ss_pred HHhcCCCcEEecCC---------chHHHHHHHHHHHHHhCCCeEEEEcCCCCcCccCC
Q 020010 171 VLGKCNVPVVKIEG---------HEADDVIATLVGQVLQKGYRAVVASPDKDFKQLIS 219 (332)
Q Consensus 171 lL~~~gi~~i~~~g---------~EADDvIAtLa~~~~~~g~~v~IvS~DKDl~QLv~ 219 (332)
.|...|+.++..|- =.+|=-|+.-+......-+.++|+|+|.|+..++.
T Consensus 69 ~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~ 126 (165)
T 2qip_A 69 ILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVE 126 (165)
T ss_dssp HHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHH
T ss_pred HHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHH
Confidence 44455776543221 15665565555544445578999999999998864
No 41
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=71.35 E-value=13 Score=33.65 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=35.0
Q ss_pred cCCCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEec----------C
Q 020010 114 SHADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI----------E 183 (332)
Q Consensus 114 ~~~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~----------~ 183 (332)
.-|.||++++||.+ ---|+.-.|...+||... +.+++.+.+ +..+||+++.. |
T Consensus 5 ~~P~HVAiIMDGNr-RwAk~rgl~r~~GH~~G~------------~~~~~i~~~----c~~lGI~~lTlYaFStENw~Rp 67 (225)
T 3ugs_B 5 NELKHLAVVMDGNR-RWARAKGFLAKLGYSQGV------------KTMQKLMEV----CMEENISNLSLFAFSTENWKRP 67 (225)
T ss_dssp CCCCEEEEEECCCC---------------CHHH------------HHHHHHHHH----HHHTTCCEEEEEEEESGGGGSC
T ss_pred CCCCeEEEeccCcH-HHHHHCCCCHHHHHHHHH------------HHHHHHHHH----HHHcCCCEEEEEEEcccccCCC
Confidence 34788999999963 222445567788998876 234444444 44579997654 5
Q ss_pred CchHHHHHHHHHHH
Q 020010 184 GHEADDVIATLVGQ 197 (332)
Q Consensus 184 g~EADDvIAtLa~~ 197 (332)
.-|=+.++.-+...
T Consensus 68 ~~EV~~Lm~L~~~~ 81 (225)
T 3ugs_B 68 KDEIDFIFELLDRC 81 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777766544
No 42
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=67.28 E-value=3.4 Score=40.12 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCccHHHHHHHHHh-cCCHHHHHH
Q 020010 275 PGFGRKTALKLLKK-HGSLENLLN 297 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsle~il~ 297 (332)
+|||||||.+|.++ +.|+|++.+
T Consensus 127 ~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 127 FGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHh
Confidence 99999999999988 348999986
No 43
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=67.03 E-value=3.6 Score=40.10 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHhh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAAA 300 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~~ 300 (332)
||+|++++.+||+.|||.++++++..
T Consensus 32 ~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 32 ENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp TTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 89999999999999999999998753
No 44
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=65.78 E-value=3.4 Score=39.75 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.6
Q ss_pred CCccHHHHHHHHHh-cCCHHHHH
Q 020010 275 PGFGRKTALKLLKK-HGSLENLL 296 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsle~il 296 (332)
+|||||||.+|.++ +.|+|++.
T Consensus 108 ~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 108 FGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCHHHHH
Confidence 99999999999987 34899998
No 45
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=65.35 E-value=5.8 Score=40.75 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=19.5
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHH
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNA 298 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~ 298 (332)
|+||+++|..|.+.|+|++++.++
T Consensus 518 ~~vG~~~a~~La~~f~sl~~l~~a 541 (586)
T 4glx_A 518 REVGEATAAGLAAYFGTLEALEAA 541 (586)
T ss_dssp TTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred CchhHHHHHHHHHHcCCHHHHHcc
Confidence 788888888888888888888764
No 46
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=61.50 E-value=4.2 Score=29.77 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=17.6
Q ss_pred CCccHHHHHHHHHh--cCCHHHHH
Q 020010 275 PGFGRKTALKLLKK--HGSLENLL 296 (332)
Q Consensus 275 ~GIG~KTA~kLL~~--ygsle~il 296 (332)
||||+++|.++++. |.|++++.
T Consensus 33 pGIG~~~A~~Il~~r~~~s~~eL~ 56 (75)
T 2duy_A 33 PGIGPVLARRIVEGRPYARVEDLL 56 (75)
T ss_dssp TTCCHHHHHHHHHTCCCSSGGGGG
T ss_pred CCCCHHHHHHHHHHcccCCHHHHH
Confidence 89999999999986 44666554
No 47
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=61.36 E-value=17 Score=33.46 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEec----------CCc
Q 020010 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI----------EGH 185 (332)
Q Consensus 116 ~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~----------~g~ 185 (332)
|.||++++||. +---|+.-.|...+||... +.+++.+.+|.+ +||+++.. |.-
T Consensus 25 P~HVAiIMDGN-~RwAk~rgl~r~~GH~~G~------------~~~~~iv~~c~~----lGI~~lTlYaFStENwkRp~~ 87 (256)
T 4h8e_A 25 PEHIAIIMDGN-GRWAKKRKMPRIKGHYEGM------------QTIKKITRIASD----IGVKYLTLYAFSTENWSRPES 87 (256)
T ss_dssp CSEEEEECCCH-HHHHHHTTCCHHHHHHHHH------------HHHHHHHHHHHH----HTCSEEEEEEEETTGGGSCHH
T ss_pred CCEEEEEcCCC-HHHHHHCCCCHHHHHHHHH------------HHHHHHHHHHHH----cCCCEEEEEEEchhhhCCCHH
Confidence 67799999985 2222444567788888876 334455555554 59987655 345
Q ss_pred hHHHHHHHHHHH-------HHhCCCeEEEEcCCCCcC
Q 020010 186 EADDVIATLVGQ-------VLQKGYRAVVASPDKDFK 215 (332)
Q Consensus 186 EADDvIAtLa~~-------~~~~g~~v~IvS~DKDl~ 215 (332)
|-+.++.-+... ..+.|.++-++ +|.|.+
T Consensus 88 EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~i-Gd~~~L 123 (256)
T 4h8e_A 88 EVNYIMNLPVNFLKTFLPELIEKNVKVETI-GFTDKL 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEEE-SCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCeEEEEe-cCcccC
Confidence 777776655432 33456666554 677754
No 48
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=59.51 E-value=15 Score=32.89 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=32.0
Q ss_pred ChhHHHHhhhcccC---CCCCCCCcccCCCCccHHHHHHHHH-----hcCCHHHHHHHhh
Q 020010 249 DPHSELSLRCIVGD---DVDGVPGIQHVVPGFGRKTALKLLK-----KHGSLENLLNAAA 300 (332)
Q Consensus 249 ~P~q~~d~~aL~GD---~sDNIPGI~~~~~GIG~KTA~kLL~-----~ygsle~il~~~~ 300 (332)
....|+++..-+|- +..-+-.+ ||||+++|.++|. .|.|+|++.+.+.
T Consensus 113 ~E~~fv~f~n~a~pITA~~~eL~~L----pGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~ 168 (205)
T 2i5h_A 113 DEKKYVDFFNKADSITTRMHQLELL----PGVGKKMMWAIIEERKKRPFESFEDIAQRVK 168 (205)
T ss_dssp THHHHHHHHC--CCBCSSSBGGGGS----TTCCHHHHHHHHHHHHHSCCCSHHHHHHHST
T ss_pred chhhhhhhccccCCccCCHHHHhcC----CCcCHHHHHHHHHHHhcCCCCCHHHHHHhcC
Confidence 45667776544432 12223345 9999999999996 3889999987654
No 49
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=59.41 E-value=7.1 Score=33.24 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 100 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 142 (182)
T 3eef_A 100 NLDMILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVE 142 (182)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhcCCCeEEEEEeccCHHHHHHHHHHHHCCCEEEEeh
Confidence 4667788899999999999999999999999999999998875
No 50
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=57.78 E-value=2.5 Score=33.41 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.9
Q ss_pred CCccHHHHHHHHHh--cCCHHHHHH
Q 020010 275 PGFGRKTALKLLKK--HGSLENLLN 297 (332)
Q Consensus 275 ~GIG~KTA~kLL~~--ygsle~il~ 297 (332)
||||+++|.+++.. |.|+|++++
T Consensus 32 pGIG~~~A~~IV~~GpF~s~edL~~ 56 (97)
T 3arc_U 32 RGLYPTLAKLIVKNAPYESVEDVLN 56 (97)
T ss_dssp TTCTTHHHHHHHHHCCCSSGGGGGG
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 99999999999974 667877763
No 51
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=57.53 E-value=4.8 Score=31.16 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=13.4
Q ss_pred CCccHHHHHHHHHhc
Q 020010 275 PGFGRKTALKLLKKH 289 (332)
Q Consensus 275 ~GIG~KTA~kLL~~y 289 (332)
||||+++|.++++.+
T Consensus 46 pGIG~~~A~~Il~~r 60 (98)
T 2edu_A 46 QRIGPKKAQLIVGWR 60 (98)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 52
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=57.28 E-value=7.9 Score=33.66 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 158 (204)
T 3hu5_A 116 ECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVT 158 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCEEEEeh
Confidence 4567788899999999999999999999999999999999886
No 53
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=57.16 E-value=8.2 Score=32.66 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++.+-|+.+...|++|+|++
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~~Gy~v~vv~ 152 (180)
T 1im5_A 110 DLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLR 152 (180)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhCCCCEEEEEEeecCHHHHHHHHHHHHCCCEEEEeh
Confidence 4567788889999999999999999999999999999998875
No 54
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=56.01 E-value=8.3 Score=35.79 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHhhh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~~~ 301 (332)
|||+++.|..++++|+|+..++++...
T Consensus 243 pGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 243 SGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 888999999999999999999998753
No 55
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=55.95 E-value=8.5 Score=33.48 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 152 (204)
T 3hb7_A 110 DLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLS 152 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEeecccHHHHHHHHHHHHCCCEEEEec
Confidence 4566788899999999999999999999999999999999875
No 56
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=55.62 E-value=8.8 Score=32.95 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 122 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 164 (199)
T 1j2r_A 122 DLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAE 164 (199)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHCCCCEEEEEeeeccHHHHHHHHHHHHCCCEEEEeh
Confidence 4566788889999999999999999999999999999998875
No 57
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=54.58 E-value=9.3 Score=33.12 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 132 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 174 (207)
T 1nf9_A 132 DLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVA 174 (207)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEEEeeecChHHHHHHHHHHHCCCEEEEeC
Confidence 4567788899999999999999888888899999999998875
No 58
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=54.40 E-value=9.2 Score=34.10 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 129 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 171 (233)
T 3irv_A 129 DLDTVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALS 171 (233)
T ss_dssp THHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEec
Confidence 4667788899999999999999999999999999999998875
No 59
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=52.94 E-value=10 Score=32.83 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-++.+...|++|+|++
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~G~~v~v~~ 158 (199)
T 3txy_A 116 DLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVS 158 (199)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCEEEEec
Confidence 4567788889999999999999999999999999999998875
No 60
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=51.92 E-value=12 Score=33.01 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-++.+...|++|+|++
T Consensus 99 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~ 141 (211)
T 3oqp_A 99 DLAGWLAARQIDTLTVTGYMTHNCDASTINHAVHSGLAVEFLH 141 (211)
T ss_dssp SHHHHHHTTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCeEEEec
Confidence 4567788899999999999999999999999999999999886
No 61
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=51.24 E-value=11 Score=32.20 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++.+-|+.+...|++|+|++
T Consensus 115 ~L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~ 157 (186)
T 3gbc_A 115 PLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLV 157 (186)
T ss_dssp BHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEh
Confidence 4567788899999999999999999999999999999998875
No 62
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=51.17 E-value=9.1 Score=32.11 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-++.+...|++|+|++
T Consensus 91 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~da~~~Gy~v~v~~ 133 (167)
T 2a67_A 91 NLNDLLTEQAVQTLEIAGVQTEFCVDTTIRMAHGLGYTCLMTP 133 (167)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEECT
T ss_pred cHHHHHHHCCCCEEEEEecccChHHHHHHHHHHHCCCEEEEec
Confidence 3556777889999999999999999999999999999999875
No 63
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=50.04 E-value=9.3 Score=33.99 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 128 ~L~~~L~~~gi~~lii~G~~t~~CV~~Ta~da~~~Gy~v~vv~ 170 (223)
T 3tg2_A 128 PLLDWLRETGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIG 170 (223)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHhcCcCceEEeecccChHHHHHHHHHHHCCCEEEEeC
Confidence 3556777889999999999999999999999999999999887
No 64
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=49.98 E-value=6.4 Score=35.40 Aligned_cols=12 Identities=58% Similarity=0.913 Sum_probs=10.8
Q ss_pred CCccHHHHHHHH
Q 020010 275 PGFGRKTALKLL 286 (332)
Q Consensus 275 ~GIG~KTA~kLL 286 (332)
||||+|||..+-
T Consensus 32 PGIG~KsA~RlA 43 (212)
T 3vdp_A 32 PGIGPKTAQRLA 43 (212)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999999874
No 65
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=49.93 E-value=9.7 Score=32.64 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=37.3
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 103 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 145 (190)
T 3lqy_A 103 DLKKVLDDAGIKKLVIVGAMTHMAIDAVTRAAEDLGYECAVAH 145 (190)
T ss_dssp SHHHHHHHC-CCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hHHHHHHhCCCCEEEEEecCcChHHHHHHHHHHHCCCEEEEec
Confidence 4566788899999999999999999999999999999998875
No 66
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=49.75 E-value=9.7 Score=32.97 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 103 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 145 (198)
T 3mcw_A 103 GLEALLRANGWLELVVAGVSTSNSVEATVRMAGNLGFAVCLAE 145 (198)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHcCCCCeEEEEEcCcChHHHHHHHHHHHCCCEEEEeC
Confidence 3556677789999999999999999999999999999999875
No 67
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=49.53 E-value=9.8 Score=33.01 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 113 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 155 (197)
T 4h17_A 113 KLHETLQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVE 155 (197)
T ss_dssp CHHHHHHHHTCSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHhcCCCEEEEEeeCcCHHHHHHHHHHHHCCCEEEEeC
Confidence 4556777789999999999999999999999999999999875
No 68
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=49.01 E-value=13 Score=32.87 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++.+-|+.+...|++|+|++
T Consensus 133 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~Gy~v~vv~ 175 (211)
T 3o94_A 133 DLDIRLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVK 175 (211)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHhCCCCeEEEEeeccChHHHHHHHHHHHCCCEEEEec
Confidence 4567788889999999999999999999999999999998875
No 69
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=48.93 E-value=41 Score=30.65 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCC----------c
Q 020010 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG----------H 185 (332)
Q Consensus 116 ~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g----------~ 185 (332)
|.||++++||. +---|+.-.|...+||... +.++ .+-+++..+||+++..-. .
T Consensus 16 P~HVAiImDGN-~RwAk~~gl~~~~GH~~G~------------~~l~----~iv~~c~~~GI~~lTlYaFSteNwkRp~~ 78 (245)
T 2d2r_A 16 LKHLAIIMDGN-GRWAKLKNKARAYGHKKGV------------KTLK----DITIWCANHKLECLTLYAFSTENWKRPKS 78 (245)
T ss_dssp CCEEEEECCCH-HHHHHTTTCCHHHHHHHHH------------HHHH----HHHHHHHTTTCSEEEEECC----------
T ss_pred CCEEEEEecCc-hHHHHHCCCChhhhHHHHH------------HHHH----HHHHHHHHcCCCEEEEEeccCcccCCCHH
Confidence 78899999984 2112333456677777665 2233 333455568999876644 3
Q ss_pred hHHHHHHHHHHH-------HHhCCCeEEEEcCCCCcC
Q 020010 186 EADDVIATLVGQ-------VLQKGYRAVVASPDKDFK 215 (332)
Q Consensus 186 EADDvIAtLa~~-------~~~~g~~v~IvS~DKDl~ 215 (332)
|=+.++..+... ..+.|.++.++ +|.+.+
T Consensus 79 EV~~Lm~l~~~~l~~~~~~l~~~~vrl~~i-G~~~~l 114 (245)
T 2d2r_A 79 EVDFLMKMLKKYLKDERSTYLDNNIRFRAI-GDLEGF 114 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCEEEEE-SCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCeEEEEe-cChhhC
Confidence 456665543332 23456666664 576654
No 70
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=48.54 E-value=8 Score=34.62 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=19.5
Q ss_pred hcccCCCCCCCCcccCCCCccHHHHHHHHHhc
Q 020010 258 CIVGDDVDGVPGIQHVVPGFGRKTALKLLKKH 289 (332)
Q Consensus 258 aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~y 289 (332)
++-+| ..-+-.| ||||+|||.+++.++
T Consensus 117 I~~~d-~~~L~~v----pGIG~KtA~rIi~el 143 (212)
T 2ztd_A 117 LADGN-VAALTRV----PGIGKRGAERMVLEL 143 (212)
T ss_dssp HHTTC-HHHHHTS----TTCCHHHHHHHHHHH
T ss_pred HHhCC-HHHHhhC----CCCCHHHHHHHHHHH
Confidence 34444 3445567 999999999999765
No 71
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=48.14 E-value=13 Score=32.99 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..||..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 157 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~ 199 (235)
T 2wt9_A 157 GLTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIE 199 (235)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEEeCccHHHHHHHHHHHhCCCEEEEec
Confidence 3566777889999999999999999999999999999998875
No 72
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=46.15 E-value=36 Score=31.21 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCCchh-hhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCCc----------
Q 020010 117 DPVIAVFDGEGGTEH-RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGH---------- 185 (332)
Q Consensus 117 ~pvivvFD~~~~~~f-R~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g~---------- 185 (332)
.||++++||. .-| |+.-.+...+||... +.+++.+. ++..+||+++..-.+
T Consensus 19 ~HVAiImDGN--~RwAk~~gl~r~~GH~~G~------------~~l~~iv~----~c~~~GI~~lTlYaFStENwkRp~~ 80 (253)
T 3qas_B 19 RHVAIIMDGN--GRWAKKQGKIRAFGHKAGA------------KSVRRAVS----FAANNGIEALTLYAFSSENWNRPAQ 80 (253)
T ss_dssp SEEEEECCCH--HHHHHHTTCCHHHHHHHHH------------HHHHHHHH----HHHHTTCSEEEEECCCC--------
T ss_pred CEEEEEecCC--HHHHHHcCCChhhhHHHHH------------HHHHHHHH----HHHHCCCCEEEEEEecCcccCCCHH
Confidence 8899999984 233 333466677777765 23444444 444579998766433
Q ss_pred hHHHHHHHH-------HHHHHhCCCeEEEEcCCCCcC
Q 020010 186 EADDVIATL-------VGQVLQKGYRAVVASPDKDFK 215 (332)
Q Consensus 186 EADDvIAtL-------a~~~~~~g~~v~IvS~DKDl~ 215 (332)
|=+.++.-+ .....+.|.++.++ +|.+.+
T Consensus 81 EV~~Lm~l~~~~l~~~~~~l~~~~vrlr~i-G~~~~l 116 (253)
T 3qas_B 81 EVSALMELFVWALDSEVKSLHRHNVRLRII-GDTSRF 116 (253)
T ss_dssp ---------CTHHHHHHHHHHHTTCEEEEE-SCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCeEEEEe-CChHhC
Confidence 444444322 12234457677665 677764
No 73
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=46.03 E-value=41 Score=31.35 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCchh-hhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCC----------
Q 020010 116 ADPVIAVFDGEGGTEH-RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG---------- 184 (332)
Q Consensus 116 ~~pvivvFD~~~~~~f-R~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g---------- 184 (332)
+.||++++||. .-| ++.-.+...+||... +.+++.+.+|.+ +||+++..-.
T Consensus 56 P~HVAIIMDGN--~RwAk~rgl~r~~GH~~G~------------~~l~~iv~~c~~----lGI~~LTlYaFStENwkRp~ 117 (284)
T 2vg3_A 56 PNHVAIVMDGN--GRWATQRGLARTEGHKMGE------------AVVIDIACGAIE----LGIKWLSLYAFSTENWKRSP 117 (284)
T ss_dssp CSEEEEECCCH--HHHHHHTTCCHHHHHHHHH------------HHHHHHHHHHHH----HTCCEEEEEEEETTGGGSCH
T ss_pred CCEEEEEecCC--hHHHHHcCCchhHHHHHHH------------HHHHHHHHHHHH----cCCCEEEEEeccCcccCCCH
Confidence 67899999984 223 333456777777765 334445555444 6998776533
Q ss_pred chHHHHHHHHHHH-------HHhCCCeEEEEcCCCCcC
Q 020010 185 HEADDVIATLVGQ-------VLQKGYRAVVASPDKDFK 215 (332)
Q Consensus 185 ~EADDvIAtLa~~-------~~~~g~~v~IvS~DKDl~ 215 (332)
.|=+.++..+... ..+.+.++.+ .+|.+.+
T Consensus 118 ~EV~~Lm~L~~~~l~~~~~~l~~~~vrvrv-iG~~~~l 154 (284)
T 2vg3_A 118 EEVRFLMGFNRDVVRRRRDTLKKLGVRIRW-VGSRPRL 154 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEEEEE-ESCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEE-eCChhhC
Confidence 3666776654332 2234545544 4677654
No 74
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=45.80 E-value=15 Score=33.58 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++.+-|+.+...|++|+|++
T Consensus 135 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 177 (287)
T 2fq1_A 135 PLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVA 177 (287)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEEeCcchHHHHHHHHHHHCCCEEEEec
Confidence 4567788899999999999999999999999999999998874
No 75
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=45.41 E-value=12 Score=32.87 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|..+...|++|+|++
T Consensus 100 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 142 (204)
T 1yzv_A 100 QVMPLVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAV 142 (204)
T ss_dssp TTHHHHSSTTEEEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEC
Confidence 5677888999999999999999999999999999999998875
No 76
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=45.31 E-value=9.8 Score=33.25 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 166 QFILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 166 ~~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
..+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 94 t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 137 (208)
T 1yac_A 94 EDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVT 137 (208)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSCCCCCHHHHHHHHHTTCEEEEET
T ss_pred chHHHHHHhcCCCEEEEEEeccchhHHHHHHHHHHCCCEEEEEC
Confidence 45667788899999999999999999999999999999999986
No 77
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=45.13 E-value=12 Score=33.07 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 141 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~ 183 (226)
T 3kl2_A 141 NLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLT 183 (226)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHhCCCCCcEEEeccCcchHHHHHHHHHHHCCCEEEEec
Confidence 4667788889999999999999999999999999999998875
No 78
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=44.93 E-value=8.5 Score=34.96 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=10.9
Q ss_pred CCccHHHHHHHH
Q 020010 275 PGFGRKTALKLL 286 (332)
Q Consensus 275 ~GIG~KTA~kLL 286 (332)
||||+|||..+-
T Consensus 18 PGIG~KSA~RlA 29 (228)
T 1vdd_A 18 PGIGPKSAQRLA 29 (228)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999999884
No 79
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=44.67 E-value=14 Score=33.21 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 149 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 191 (236)
T 3ot4_A 149 MLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGFRPLVLS 191 (236)
T ss_dssp SHHHHHHHTTCCEEEEEESCTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hHHHHHHHCCCCEEEEeCccCcHHHHHHHHHHHHCCCEEEEec
Confidence 4667788899999999999999999999999988999999875
No 80
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=42.99 E-value=15 Score=33.54 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..||..+..-|.++|=++-+-|+.+...|++|+|++
T Consensus 154 ~L~~~Lr~~gi~~lvI~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~ 196 (264)
T 1nba_A 154 NLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPR 196 (264)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEG
T ss_pred hHHHHHHhCCCCEEEEEecCcCCHHHHHHHHHHHCCCEEEEec
Confidence 3566788899999999999999999998999999999999885
No 81
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=42.46 E-value=15 Score=32.74 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..|+..+..-|.++|=++.+-|+.+...|++|+|++
T Consensus 147 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~ 189 (227)
T 3r2j_A 147 GLAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLE 189 (227)
T ss_dssp SHHHHHHHHTCCEEEEEESCTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEEEEeccchHHHHHHHHHHHCCCEEEEEh
Confidence 4566777789999999999999999999999999999998875
No 82
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=42.05 E-value=19 Score=31.65 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+..||..+..-|.++|=++.+-|+.+...|++|+|++
T Consensus 144 ~L~~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~ 186 (216)
T 3v8e_A 144 DMNKYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLL 186 (216)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEec
Confidence 3566778889999999999999999999999999999998875
No 83
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=41.71 E-value=21 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCC-CCcCccCCCCeEEEe
Q 020010 186 EADDVIATLVGQVLQKGYRAVVASPD-KDFKQLISEDVQLVM 226 (332)
Q Consensus 186 EADDvIAtLa~~~~~~g~~v~IvS~D-KDl~QLv~~~v~v~~ 226 (332)
-+|-+|+..|.. .|. .++|.| +|+..+.+ +.+.+
T Consensus 97 ~~D~lIaA~A~~---~~~--~lvT~d~~df~~~~g--l~~~n 131 (134)
T 3zvk_A 97 NNDLLIASHAIA---ENA--TLVTNNIKEFKRIPN--LILEN 131 (134)
T ss_dssp HHHHHHHHHHHH---HTC--EEEESSTTTSCSCTT--CEEEE
T ss_pred ccHHHHHHHHHH---CCC--EEEECCHHHhcCCCC--CeeeC
Confidence 578888887764 344 688999 99998754 45544
No 84
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=40.52 E-value=7 Score=30.57 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCC-CCcCccCCCCeEEEecC
Q 020010 186 EADDVIATLVGQVLQKGYRAVVASPD-KDFKQLISEDVQLVMPL 228 (332)
Q Consensus 186 EADDvIAtLa~~~~~~g~~v~IvS~D-KDl~QLv~~~v~v~~~~ 228 (332)
-+|-+|+..|.. .|. .++|.| +|+..+ .+.+.+|.
T Consensus 102 ~~D~liaA~A~~---~~~--~lvT~d~~df~~~---~l~~~~P~ 137 (139)
T 2h1c_A 102 AADGYIAATAKQ---HSL--TVATRDTGSFFAA---DVAVFNPW 137 (139)
T ss_dssp HHHHHHHHHHHH---HTC--EEECSCCHHHHHT---TCCEECTT
T ss_pred ccHHHHHHHHHH---cCC--eEEECCHHHHhhC---CCeeeCCC
Confidence 578888887764 343 689999 899877 36677664
No 85
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=40.12 E-value=8 Score=31.12 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCC-CCcCccCC
Q 020010 186 EADDVIATLVGQVLQKGYRAVVASPD-KDFKQLIS 219 (332)
Q Consensus 186 EADDvIAtLa~~~~~~g~~v~IvS~D-KDl~QLv~ 219 (332)
-+|.+|+..|.. .|. .++|.| ||+..+.+
T Consensus 96 ~~D~lIaA~A~~---~~~--~lvT~D~kdf~~i~~ 125 (149)
T 1v96_A 96 MEDIITATTAIY---TNS--LLVTDDPKRYEPIRR 125 (149)
T ss_dssp HHHHHHHHHHHH---HTC--EEEESCHHHHGGGGG
T ss_pred HhHHHHHHHHHH---cCC--EEEECCHHHHhhhhh
Confidence 489999988864 344 588999 69987644
No 86
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=40.01 E-value=9 Score=33.64 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.2
Q ss_pred CCCCCCcccCCCCccHHHHHHHHHhc
Q 020010 264 VDGVPGIQHVVPGFGRKTALKLLKKH 289 (332)
Q Consensus 264 sDNIPGI~~~~~GIG~KTA~kLL~~y 289 (332)
.+-+-.| ||||+|||.+++..+
T Consensus 106 ~~~L~~v----pGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 106 ARLLTSA----SGVGRRLAERIALEL 127 (191)
T ss_dssp HHHHTTS----TTCCHHHHHHHHHHH
T ss_pred HHHHHhC----CCCCHHHHHHHHHHH
Confidence 4556777 999999999998766
No 87
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=39.83 E-value=7.3 Score=31.95 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCCCCcCc
Q 020010 186 EADDVIATLVGQVLQKGYRAVVASPDKDFKQ 216 (332)
Q Consensus 186 EADDvIAtLa~~~~~~g~~v~IvS~DKDl~Q 216 (332)
=+|-+++..|.+ .|. .++|.|+|+.+
T Consensus 101 ~~Dali~A~A~~---~g~--~l~T~D~dF~~ 126 (156)
T 1w8i_A 101 YTDAISEVVAEE---LKL--KLISYDSRFSL 126 (156)
T ss_dssp HHHHHHHHHHHH---HTC--EEECSCTTCSS
T ss_pred HhHHHHHHHHHH---cCC--EEEEeCcccCc
Confidence 478888888875 343 79999999998
No 88
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=38.71 E-value=60 Score=29.08 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCCchh-hhhh-chhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEec----------C
Q 020010 116 ADPVIAVFDGEGGTEH-RRQL-LPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI----------E 183 (332)
Q Consensus 116 ~~pvivvFD~~~~~~f-R~el-~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~----------~ 183 (332)
|.|+++++||. .-| |+.- .|...+||... +.+++.+.+|.+ +||+++.. |
T Consensus 3 P~HvAiImDGN--~RwA~~~g~l~~~~GH~~G~------------~~l~~i~~~c~~----~GI~~lTlYaFSteN~kRp 64 (227)
T 2vg0_A 3 PRHIAVLCDGN--RRWARSAGYDDVSYGYRMGA------------AKIAEMLRWCHE----AGIELATVYLLSTENLQRD 64 (227)
T ss_dssp CSEEEEECCCH--HHHHHHTTCSCTHHHHHHHH------------HHHHHHHHHHHH----HTCSEEEEEEEETGGGGSC
T ss_pred CcEEEEEecCC--hHHHHHcCCCchhHHHHHHH------------HHHHHHHHHHHH----cCCCEEEEEeecccccCCC
Confidence 67899999984 223 3334 67777777765 334455555544 69987655 3
Q ss_pred CchHHHHHHHHHHHHH
Q 020010 184 GHEADDVIATLVGQVL 199 (332)
Q Consensus 184 g~EADDvIAtLa~~~~ 199 (332)
.-|=+.++.-+.....
T Consensus 65 ~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 65 PDELAALIEIITDVVE 80 (227)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777766655443
No 89
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=37.11 E-value=26 Score=32.22 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCchhhhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEec----------CCc
Q 020010 116 ADPVIAVFDGEGGTEHRRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKI----------EGH 185 (332)
Q Consensus 116 ~~pvivvFD~~~~~~fR~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~----------~g~ 185 (332)
|.||++++||. +---|+.-.|...+||... +.+++.+.+ +..+||+++.. |.-
T Consensus 18 P~HVAiIMDGN-rRwAk~rgl~r~~GH~~G~------------~~l~~i~~~----c~~lGI~~lTlYaFStENwkRp~~ 80 (253)
T 3sgv_B 18 CRHVAIIMDGN-GRWAKKQGKIRAFGHKAGA------------KSVRRAVSF----AANNGIEALTLYAFSSENWNRPAQ 80 (253)
T ss_dssp CSEEEEEECCH-HHHHHHTTCCHHHHHHHHH------------HHHHHHHHH----HHHTTCSEEEEECC----------
T ss_pred CCEEEEEecCc-HHHHHHCCCCHHHHHHHHH------------HHHHHHHHH----HHHcCCCEEEEEEEchhccCCCHH
Confidence 57799999995 2222455578888888876 234444444 44579998765 344
Q ss_pred hHHHHHHHHHHH-------HHhCCCeEEEEcCCCCcC
Q 020010 186 EADDVIATLVGQ-------VLQKGYRAVVASPDKDFK 215 (332)
Q Consensus 186 EADDvIAtLa~~-------~~~~g~~v~IvS~DKDl~ 215 (332)
|=+.++.-+... ..+.|.++-++ +|.|.+
T Consensus 81 EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~i-Gd~~~L 116 (253)
T 3sgv_B 81 EVSALMELFVWALDSEVKSLHRHNVRLRII-GDTSRF 116 (253)
T ss_dssp -CHHHHHHHHTTHHHHHHHHHHTTCEEEEE-SCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCeEEEEE-eehhhC
Confidence 666666554332 33456565554 666654
No 90
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=37.05 E-value=14 Score=32.62 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=17.7
Q ss_pred CCCCCCcccCCCCccHHHHHHHHHhc
Q 020010 264 VDGVPGIQHVVPGFGRKTALKLLKKH 289 (332)
Q Consensus 264 sDNIPGI~~~~~GIG~KTA~kLL~~y 289 (332)
.+-+-.| ||||+|||.+++.++
T Consensus 107 ~~~L~~v----pGIG~K~A~rI~~el 128 (203)
T 1cuk_A 107 VGALVKL----PGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHHTS----TTCCHHHHHHHHHHH
T ss_pred HHHHhhC----CCCCHHHHHHHHHHH
Confidence 4456677 999999999998755
No 91
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=35.46 E-value=2.3 Score=35.64 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChhHHHHhhhcccCCCCCCCCc
Q 020010 239 LKHYIAQYNCDPHSELSLRCIVGDDVDGVPGI 270 (332)
Q Consensus 239 ~~~v~e~~Gv~P~q~~d~~aL~GD~sDNIPGI 270 (332)
...+.+++|+.|++ ++.+||+.-+|.+.
T Consensus 146 ~~~a~~~lg~~p~e----~l~VgDs~~Di~aA 173 (216)
T 3kbb_A 146 YLLVLERLNVVPEK----VVVFEDSKSGVEAA 173 (216)
T ss_dssp HHHHHHHHTCCGGG----EEEEECSHHHHHHH
T ss_pred HHHHHHhhCCCccc----eEEEecCHHHHHHH
Confidence 35678899999986 67899986666544
No 92
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=35.11 E-value=24 Score=30.72 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 167 FILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 167 ~i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
.+.++|+ |+..+..-|.++|=++-+-|..+...|++|+|++
T Consensus 99 ~L~~~L~--gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~ 139 (200)
T 1x9g_A 99 QVEELLE--DVDNAVVFGIEGHACILQTVADLLDMNKRVFLPK 139 (200)
T ss_dssp HHHHTTT--TCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEG
T ss_pred hHHHHhC--CCCEEEEEEEecCcHHHHHHHHHHhCCCEEEEeC
Confidence 5566777 9999999999999999999999999999999885
No 93
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=34.01 E-value=18 Score=32.24 Aligned_cols=17 Identities=35% Similarity=0.605 Sum_probs=14.6
Q ss_pred CCccHHHHHHHHHhcCC
Q 020010 275 PGFGRKTALKLLKKHGS 291 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygs 291 (332)
||||+|||--+|..+|-
T Consensus 136 ~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 136 KGIGWKEASHFLRNTGV 152 (219)
T ss_dssp TTCCHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 99999999998876775
No 94
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=31.22 E-value=23 Score=31.03 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.3
Q ss_pred CCccHHHHHHHHHhcC
Q 020010 275 PGFGRKTALKLLKKHG 290 (332)
Q Consensus 275 ~GIG~KTA~kLL~~yg 290 (332)
||||+|||--+|.-.|
T Consensus 123 pGIG~kTA~~il~~~~ 138 (207)
T 3fhg_A 123 KGIGMQEASHFLRNVG 138 (207)
T ss_dssp TTCCHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHhC
Confidence 9999999999886534
No 95
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=31.21 E-value=26 Score=32.96 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=22.2
Q ss_pred CCCCccHHHHHHHHHhcCCHHHHHHH
Q 020010 273 VVPGFGRKTALKLLKKHGSLENLLNA 298 (332)
Q Consensus 273 ~~~GIG~KTA~kLL~~ygsle~il~~ 298 (332)
+-.|+|.|||..||..||+.|.+-+-
T Consensus 415 kkegvgrktaerllrafgnpervkql 440 (519)
T 2csb_A 415 KKEGVGRKTAERLLRAFGNPERVKQL 440 (519)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred hhcccchhHHHHHHHHhCCHHHHHHH
Confidence 34799999999999999999887543
No 96
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=30.90 E-value=23 Score=31.49 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHHhcCC
Q 020010 275 PGFGRKTALKLLKKHGS 291 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygs 291 (332)
||||+|||--+|...|-
T Consensus 131 pGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 131 KGIGYKEASHFLRNVGY 147 (214)
T ss_dssp TTCCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 99999999988765543
No 97
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=30.49 E-value=22 Score=31.54 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHhhh
Q 020010 277 FGRKTALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 277 IG~KTA~kLL~~ygsle~il~~~~~ 301 (332)
+| +.|.+||++|||+.++++++..
T Consensus 8 Fg-~~Ak~LlkeFG~in~fLe~IP~ 31 (222)
T 2dla_A 8 FS-EKAKELLKGFGSINDFMDAIPK 31 (222)
T ss_dssp TS-HHHHHHTTTTSSHHHHHHHGGG
T ss_pred hh-HHHHHHHHHhccHHHHHHHccc
Confidence 44 4789999999999999998763
No 98
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=29.15 E-value=28 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=22.4
Q ss_pred hCC-ChhHHHHhhhcccCCCCCCCCcccCCCCccHHHHHHHHHhc
Q 020010 246 YNC-DPHSELSLRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKH 289 (332)
Q Consensus 246 ~Gv-~P~q~~d~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~y 289 (332)
+|+ +++++.. .+..|| +..+ ||||+|||.+++...
T Consensus 113 lg~~~~~~l~~-a~~~~~----l~~~----~GiG~k~a~~i~~~l 148 (575)
T 3b0x_A 113 LGIDSLEKLKA-ALDRGD----LTRL----KGFGPKRAERIREGL 148 (575)
T ss_dssp SCCCSHHHHHH-HHHHTG----GGGS----TTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHH-HHHcCC----cccC----CCCCccHHHHHHHHH
Confidence 343 4555443 233354 6677 999999999996543
No 99
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=29.14 E-value=21 Score=29.10 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=29.3
Q ss_pred CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCcCccCCC-CeEEEecCC
Q 020010 183 EGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQLISE-DVQLVMPLQ 229 (332)
Q Consensus 183 ~g~EADDvIAtLa~~~~~~g~~v~IvS~DKDl~QLv~~-~v~v~~~~~ 229 (332)
.| . |+.|+.+|.. .| .+++|.|+||...... +|.+..+.+
T Consensus 97 ~~-~-D~~Ila~A~~---~~--~~LvT~D~~l~~~a~~~Gv~vi~~~~ 137 (147)
T 1o4w_A 97 SE-G-DPSLIEAAEK---YG--CILITNDKELKRKAKQRGIPVGYLKE 137 (147)
T ss_dssp SC-S-HHHHHHHHHH---HT--CEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred CC-c-hHHHHHHHHH---hC--CEEEECCHHHHHHHHHCCCeEEEecC
Confidence 46 5 9999999875 23 6899999999876543 566666543
No 100
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=28.89 E-value=43 Score=30.53 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCchh-hhhhchhHHhcchhhhhhhhhhhhcchhhHHHhHHHHHHHHhcCCCcEEecCC----------
Q 020010 116 ADPVIAVFDGEGGTEH-RRQLLPSYKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEG---------- 184 (332)
Q Consensus 116 ~~pvivvFD~~~~~~f-R~el~p~YKanR~~~p~p~~~~~~~~~~~L~~ql~~i~elL~~~gi~~i~~~g---------- 184 (332)
|.||++++||. .-| ++.-.|...+||... +.+++.+.+|.+ +||+++..-.
T Consensus 21 P~HVAiImDGN--~RwA~~~gl~~~~GH~~G~------------~~l~~iv~~c~~----~GI~~lTlYaFSteNwkRp~ 82 (249)
T 1f75_A 21 PKHIAIIMDGN--GRWAKQKKMPRIKGHYEGM------------QTVRKITRYASD----LGVKYLTLYAFSTENWSRPK 82 (249)
T ss_dssp CSEEEEEECCH--HHHHHHTTCCHHHHHHHHH------------HHHHHHHHHHHH----HTCCEEEEEEC---------
T ss_pred CCEEEEEecCC--cHHHHHCCCChhhhHHHHH------------HHHHHHHHHHHH----cCCCEEEEEEecccccCCCH
Confidence 67899999984 233 333466777777765 334455555544 6999876533
Q ss_pred chHHHHHHHHH-------HHHHhCCCeEEEEcCCCCcC
Q 020010 185 HEADDVIATLV-------GQVLQKGYRAVVASPDKDFK 215 (332)
Q Consensus 185 ~EADDvIAtLa-------~~~~~~g~~v~IvS~DKDl~ 215 (332)
.|=+.++.-+. ....+.|.++.++ +|.|.+
T Consensus 83 ~EV~~Lm~l~~~~l~~~~~~l~~~~vr~~~i-G~~~~l 119 (249)
T 1f75_A 83 DEVNYLMKLPGDFLNTFLPELIEKNVKVETI-GFIDDL 119 (249)
T ss_dssp ---CGGGTHHHHHHHHHHHHHHHTTCEEEEE-SCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEEe-CChhhC
Confidence 24444433222 1233456666554 576654
No 101
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=27.11 E-value=25 Score=31.05 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.2
Q ss_pred CCccHHHHHHHHHh
Q 020010 275 PGFGRKTALKLLKK 288 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ 288 (332)
||||+|||--++--
T Consensus 127 pGIG~kTA~~il~~ 140 (218)
T 1pu6_A 127 KGIGKESADAILCY 140 (218)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999888764
No 102
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=24.98 E-value=29 Score=30.62 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=12.1
Q ss_pred CCccHHHHHHHHHh
Q 020010 275 PGFGRKTALKLLKK 288 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ 288 (332)
||||+|||.-++--
T Consensus 121 pGIG~~TA~~il~~ 134 (221)
T 1kea_A 121 PGVGKYTCAAVMCL 134 (221)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999888754
No 103
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=24.15 E-value=31 Score=30.80 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.0
Q ss_pred CCccHHHHHHHHHh-cCCH
Q 020010 275 PGFGRKTALKLLKK-HGSL 292 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygsl 292 (332)
||||+|||--++-- +|-.
T Consensus 144 pGIG~kTA~~ill~alg~p 162 (233)
T 2h56_A 144 KGIGQWTAEMFMMFSLGRL 162 (233)
T ss_dssp TTCCHHHHHHHHHHTTCCS
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 99999999888653 5643
No 104
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=24.05 E-value=31 Score=30.48 Aligned_cols=16 Identities=50% Similarity=0.736 Sum_probs=12.7
Q ss_pred CCccHHHHHHHHHh-cC
Q 020010 275 PGFGRKTALKLLKK-HG 290 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-yg 290 (332)
||||+|||.-++.- ||
T Consensus 115 pGIG~~TA~~il~~a~~ 131 (225)
T 1kg2_A 115 PGVGRSTAGAILSLSLG 131 (225)
T ss_dssp TTCCHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCC
Confidence 99999999887653 44
No 105
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=23.56 E-value=32 Score=30.01 Aligned_cols=14 Identities=57% Similarity=0.850 Sum_probs=11.8
Q ss_pred CCccHHHHHHHHHh
Q 020010 275 PGFGRKTALKLLKK 288 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ 288 (332)
||||+|||--++--
T Consensus 115 ~GIG~~tA~~il~~ 128 (211)
T 2abk_A 115 PGVGRKTANVVLNT 128 (211)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH
Confidence 99999999887653
No 106
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=23.26 E-value=34 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCC-CCcCccCC
Q 020010 186 EADDVIATLVGQVLQKGYRAVVASPD-KDFKQLIS 219 (332)
Q Consensus 186 EADDvIAtLa~~~~~~g~~v~IvS~D-KDl~QLv~ 219 (332)
-+|-+|+..|.. .|. .++|.| +||..+.+
T Consensus 96 ~~D~lIaA~A~~---~~~--~lvT~d~~dF~~~~g 125 (132)
T 3tnd_A 96 PFDQMIAGHARS---RGL--IIVTNNTREFERVGG 125 (132)
T ss_dssp HHHHHHHHHHHH---TTC--EEEESCCHHHHTSTT
T ss_pred chHHHHHHHHHH---cCC--EEEECCHHHhCCCCC
Confidence 578888887764 454 688999 99987744
No 107
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=22.36 E-value=47 Score=25.82 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=11.3
Q ss_pred CCccHHHHHHHHHh
Q 020010 275 PGFGRKTALKLLKK 288 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ 288 (332)
|||||+.+.+|-.+
T Consensus 24 pGIG~~~~~~L~~~ 37 (89)
T 1ci4_A 24 AGIGEVLGKKLEER 37 (89)
T ss_dssp TTCCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHc
Confidence 89999988877664
No 108
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=21.94 E-value=10 Score=35.16 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHhhh
Q 020010 275 PGFGRKTALKLLKKHGSLENLLNAAAV 301 (332)
Q Consensus 275 ~GIG~KTA~kLL~~ygsle~il~~~~~ 301 (332)
||||+++|..+++.|+|+..++++...
T Consensus 239 ~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 239 RGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp TTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 899999999999999999999988773
No 109
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=21.85 E-value=37 Score=31.68 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=19.8
Q ss_pred hcccCCCC---------CCCCcccCCC-CccHHHHHHHHHh
Q 020010 258 CIVGDDVD---------GVPGIQHVVP-GFGRKTALKLLKK 288 (332)
Q Consensus 258 aL~GD~sD---------NIPGI~~~~~-GIG~KTA~kLL~~ 288 (332)
-|+|| .| .|..| | |+||.|.+-|++.
T Consensus 239 ~l~GD-Vdf~~v~~~a~~iTPV----PGGVGpmT~a~Ll~N 274 (288)
T 1b0a_A 239 KVVGD-VVFEDAAKRASYITPV----PGGVGPMTVATLIEN 274 (288)
T ss_dssp CEECS-BCHHHHHHHCSEECCS----SSSSHHHHHHHHHHH
T ss_pred CccCC-cCHHHHhhhccEecCC----CCCccHHHHHHHHHH
Confidence 37887 34 46667 7 6999999999865
No 110
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=21.69 E-value=38 Score=31.58 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=40.1
Q ss_pred HhCCCeEEEEcC-CCCcCccCCCCeEEEecCCCCCccEEeeHHHHHHH-----hCCChhHHHHhhhcccCCCC-------
Q 020010 199 LQKGYRAVVASP-DKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQ-----YNCDPHSELSLRCIVGDDVD------- 265 (332)
Q Consensus 199 ~~~g~~v~IvS~-DKDl~QLv~~~v~v~~~~~~~~~~~~~~~~~v~e~-----~Gv~P~q~~d~~aL~GD~sD------- 265 (332)
...|..|+|+.. -+|+...+..---++.... ....++.+++.+- .|+++.. --|+|| .|
T Consensus 182 ~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg---~p~~I~~~~vk~GavVIDvgi~~~~----g~l~GD-Vdf~~v~~~ 253 (285)
T 3l07_A 182 LNAKATVTTCHRFTTDLKSHTTKADILIVAVG---KPNFITADMVKEGAVVIDVGINHVD----GKIVGD-VDFAAVKDK 253 (285)
T ss_dssp HHTTCEEEEECTTCSSHHHHHTTCSEEEECCC---CTTCBCGGGSCTTCEEEECCCEEET----TEEECS-BCHHHHTTT
T ss_pred HHCCCeEEEEeCCchhHHHhcccCCEEEECCC---CCCCCCHHHcCCCcEEEEecccCcC----CceecC-ccHHHHHhh
Confidence 346888887753 4455544433212222111 0112344433221 2444322 148888 44
Q ss_pred --CCCCcccCCC-CccHHHHHHHHHh
Q 020010 266 --GVPGIQHVVP-GFGRKTALKLLKK 288 (332)
Q Consensus 266 --NIPGI~~~~~-GIG~KTA~kLL~~ 288 (332)
.|-.| | |+||.|..-|++.
T Consensus 254 a~~iTPV----PGGVGpmT~a~Ll~n 275 (285)
T 3l07_A 254 VAAITPV----PGGVGPMTITELLYN 275 (285)
T ss_dssp CSEECCS----SSSSHHHHHHHHHHH
T ss_pred heEeCCC----CCcChHHHHHHHHHH
Confidence 35556 7 5999999999865
No 111
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=21.51 E-value=45 Score=28.24 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=15.0
Q ss_pred CCCCCCCCcccCCCCccHHHHHHHH
Q 020010 262 DDVDGVPGIQHVVPGFGRKTALKLL 286 (332)
Q Consensus 262 D~sDNIPGI~~~~~GIG~KTA~kLL 286 (332)
++-+.+-.+ ||||++||-..+
T Consensus 101 ~~~~~L~~L----pGVG~yTAdav~ 121 (161)
T 4e9f_A 101 KQWKYPIEL----HGIGKYGNDSYR 121 (161)
T ss_dssp SCCSSGGGS----TTCCHHHHHHHH
T ss_pred CChhhhhcC----CCchHHHHHHHH
Confidence 344555567 999999997654
No 112
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=21.27 E-value=38 Score=30.03 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=12.9
Q ss_pred CCccHHHHHHHHHh-cC
Q 020010 275 PGFGRKTALKLLKK-HG 290 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-yg 290 (332)
||||++||--++.- ||
T Consensus 119 pGIG~~TA~~il~~a~g 135 (226)
T 1orn_A 119 PGVGRKTANVVVSVAFG 135 (226)
T ss_dssp TTCCHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHCC
Confidence 99999999888753 44
No 113
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=21.11 E-value=20 Score=32.54 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=0.0
Q ss_pred hhhcccCCCCCCCCcccCCCCccHHHHHHHHHhcCC
Q 020010 256 LRCIVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGS 291 (332)
Q Consensus 256 ~~aL~GD~sDNIPGI~~~~~GIG~KTA~kLL~~ygs 291 (332)
+..|..-+.+-+-.| ||||+|||.+++.....
T Consensus 39 ve~L~~a~~~eL~~v----~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 39 VEDVRGADQSALADV----SGIGNALAARIKADVGG 70 (241)
T ss_dssp ------------------------------------
T ss_pred HHHHHhCCHHHHHhc----cCCCHHHHHHHHHHHHH
Confidence 344555456677788 99999999999776543
No 114
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=20.93 E-value=1.5e+02 Score=22.58 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=42.4
Q ss_pred hHHHhHHHHHHHHhcCCCcEEe-----cCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCcCc
Q 020010 160 RVGRSHQFILDVLGKCNVPVVK-----IEGHEADDVIATLVGQVLQKGYRAVVASPDKDFKQ 216 (332)
Q Consensus 160 ~L~~ql~~i~elL~~~gi~~i~-----~~g~EADDvIAtLa~~~~~~g~~v~IvS~DKDl~Q 216 (332)
+|...+..+.++++.-|..-+. ...-||+-..|.|.+-+++-|++.+=++-|.|...
T Consensus 28 elqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndinvtfdgdtvt 89 (106)
T 1qys_A 28 ELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDINVTFDGDTVT 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcceeEEEcCCeEE
Confidence 4555667777777666655432 23469999999999999999999998898887643
No 115
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=20.64 E-value=40 Score=29.91 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=13.1
Q ss_pred CCccHHHHHHHHHh-cCC
Q 020010 275 PGFGRKTALKLLKK-HGS 291 (332)
Q Consensus 275 ~GIG~KTA~kLL~~-ygs 291 (332)
||||+|||--++-- +|-
T Consensus 152 ~GIG~~TA~~ill~~lg~ 169 (225)
T 2yg9_A 152 PGIGRWTAEMFLLFALAR 169 (225)
T ss_dssp TTCCHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 99999999887643 453
No 116
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=20.62 E-value=40 Score=31.68 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=19.5
Q ss_pred hcccCCCC---------CCCCcccCCC-CccHHHHHHHHHh
Q 020010 258 CIVGDDVD---------GVPGIQHVVP-GFGRKTALKLLKK 288 (332)
Q Consensus 258 aL~GD~sD---------NIPGI~~~~~-GIG~KTA~kLL~~ 288 (332)
-|+|| .| .|..| | |+||.|.+-|++.
T Consensus 251 klvGD-Vdf~~v~~~a~~iTPV----PGGVGpmTiamLl~N 286 (301)
T 1a4i_A 251 KVVGD-VAYDEAKERASFITPV----PGGVGPMTVAMLMQS 286 (301)
T ss_dssp CCBCS-BCHHHHTTTCSEECCS----SSSHHHHHHHHHHHH
T ss_pred eeecc-ccHHHhhhhceEeCCC----CCCccHHHHHHHHHH
Confidence 38888 34 45556 7 7999999999865
No 117
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans}
Probab=20.61 E-value=63 Score=27.78 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=35.1
Q ss_pred HHHHHhcCCCcEEecCCchHHHHHHHHHHHHHhCCCeEEEEc
Q 020010 168 ILDVLGKCNVPVVKIEGHEADDVIATLVGQVLQKGYRAVVAS 209 (332)
Q Consensus 168 i~elL~~~gi~~i~~~g~EADDvIAtLa~~~~~~g~~v~IvS 209 (332)
+.++|+. +..+..-|.++|=++-+-++.+...|++|+|++
T Consensus 94 L~~~L~~--i~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~ 133 (199)
T 2b34_A 94 TEDTLKK--VQNVILVGIEAHVCVLQTTYDLLERGLNVHVVV 133 (199)
T ss_dssp GHHHHTT--CSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcC--CCEEEEEEEecCHHHHHHHHHHHHCCCEEEEeC
Confidence 5667776 888899999999999999999999999998875
No 118
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=20.28 E-value=41 Score=30.09 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=13.3
Q ss_pred CCccHHHHHHHHH-hcCC
Q 020010 275 PGFGRKTALKLLK-KHGS 291 (332)
Q Consensus 275 ~GIG~KTA~kLL~-~ygs 291 (332)
||||++||--++- -+|-
T Consensus 156 ~GIG~~TA~~ill~alg~ 173 (232)
T 4b21_A 156 KGVKRWTIEMYSIFTLGR 173 (232)
T ss_dssp TTCCHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHhCCC
Confidence 9999999988754 4554
No 119
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=20.06 E-value=42 Score=29.88 Aligned_cols=18 Identities=33% Similarity=0.252 Sum_probs=14.1
Q ss_pred CCccHHHHHHHHH-hcCCH
Q 020010 275 PGFGRKTALKLLK-KHGSL 292 (332)
Q Consensus 275 ~GIG~KTA~kLL~-~ygsl 292 (332)
||||++||--++- -+|-.
T Consensus 145 ~GIG~~TA~~ill~~lg~p 163 (228)
T 3s6i_A 145 KGIGRWTVEMLLIFSLNRD 163 (228)
T ss_dssp TTCCHHHHHHHHHHTSCCS
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 9999999988764 46643
Done!